Citrus Sinensis ID: 012413
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | 2.2.26 [Sep-21-2011] | |||||||
| O22193 | 826 | U-box domain-containing p | no | no | 0.609 | 0.342 | 0.5 | 1e-68 | |
| Q5XEZ8 | 707 | U-box domain-containing p | no | no | 0.622 | 0.408 | 0.498 | 8e-67 | |
| Q8GWV5 | 760 | U-box domain-containing p | no | no | 0.596 | 0.364 | 0.478 | 1e-58 | |
| Q5VRH9 | 611 | U-box domain-containing p | no | no | 0.592 | 0.450 | 0.458 | 8e-58 | |
| Q9C9A6 | 628 | U-box domain-containing p | no | no | 0.579 | 0.428 | 0.461 | 1e-55 | |
| Q9SNC6 | 660 | U-box domain-containing p | no | no | 0.584 | 0.410 | 0.456 | 2e-55 | |
| Q8GUG9 | 612 | U-box domain-containing p | no | no | 0.601 | 0.455 | 0.435 | 1e-54 | |
| Q8VZ40 | 632 | U-box domain-containing p | no | no | 0.607 | 0.446 | 0.446 | 6e-53 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.551 | 0.391 | 0.418 | 5e-48 | |
| Q0IMG9 | 694 | E3 ubiquitin-protein liga | no | no | 0.551 | 0.368 | 0.461 | 6e-48 |
| >sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 261 bits (666), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 142/284 (50%), Positives = 196/284 (69%), Gaps = 1/284 (0%)
Query: 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDP 233
+++ VK ++ L+SSS+ +R A A+LRLLAK+ DNR++IG SGA+ LV LL +D
Sbjct: 538 EVETQVKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDS 597
Query: 234 WTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN 293
TQE++VTALLNLS+++NNK I +AGAI+ L++VL+ G+ +K+N+A L SL++IEEN
Sbjct: 598 ATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEEN 657
Query: 294 KSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAG 353
K IG GAI PLV LL G+ RGKKDA T L+ L ++NK V +GAVR L+ ++
Sbjct: 658 KIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLM-D 716
Query: 354 QGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413
GM +KA+ VL+ LA I EGR AI +E GI LVE +E GS +GKE A LLQL
Sbjct: 717 PAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTN 776
Query: 414 SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457
S + ++++EG +PPLVALSQ+G+ RA+ KA+ LL Y R R
Sbjct: 777 SGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQRH 820
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 145/291 (49%), Positives = 194/291 (66%), Gaps = 2/291 (0%)
Query: 168 ESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPL 227
E+ S ++ VK ID L+SSS+ +R A A++R+LA+N +DNR++I A+P+LV L
Sbjct: 412 ETGSSSSIETEVKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSL 471
Query: 228 LKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGT-ETSKQNAACALMS 286
L +D Q +VT LLNLS+++NNK+LI +GAI L++VLKTG E +K N+A L S
Sbjct: 472 LYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFS 531
Query: 287 LALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRP 346
L++IEE K+ IG GAI PLV LL GS GKKDA T L+ L +NK + + AGAVR
Sbjct: 532 LSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRY 591
Query: 347 LVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLT 406
LV ++ GM EKA+VVL+ LA + EG+ AI EE GI LVE +E GS +GKE A
Sbjct: 592 LVELM-DPAFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSARGKENATAA 650
Query: 407 LLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457
LLQLC S K ++REG IPPLVAL+++G+ R K KA+ LL Y + RQ
Sbjct: 651 LLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQ 701
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 228 bits (580), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/280 (47%), Positives = 186/280 (66%), Gaps = 3/280 (1%)
Query: 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237
T+K+ ++ L+S S +K +AAA++R L N +NRV IG GA+ L+ LL + TQE
Sbjct: 474 TIKL-VEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQE 532
Query: 238 HSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSI 297
H+VTALLNLS+ E NK +I GAI+ LV+VL TG + +K+N+A +L SL++++ N+ I
Sbjct: 533 HAVTALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERI 592
Query: 298 G-ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGE 356
G + AI LV+LL G+ RGKKDA + L+ L NK R V A AV+ LV +L E
Sbjct: 593 GQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLE 652
Query: 357 GMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416
M +KA+ +L+ L+ + EGR+AIV E GI LVE ++ GS +GKE A LLQLC S K
Sbjct: 653 -MVDKAVALLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPK 711
Query: 417 NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456
L+++EG IPPLVALSQ+G+ RAK KA+ LL + R R
Sbjct: 712 FCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQR 751
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 127/277 (45%), Positives = 181/277 (65%), Gaps = 2/277 (0%)
Query: 183 IDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTA 242
++ L+S + +R+AA ++RLLAK +NR+ I E+GA+P LV LL SDP TQEH+VTA
Sbjct: 329 MNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTA 388
Query: 243 LLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGA 302
LLNLS+HENNK I ++ AI +V VLKTG+ +++NAA L SL++++ENK +IGA GA
Sbjct: 389 LLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGA 448
Query: 303 IPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKA 362
IPPL++LL GS RGKKDA T ++ LC + NK RAV AG V L+ L GM ++A
Sbjct: 449 IPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEA 508
Query: 363 MVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLV 422
+ +LS+LAG EG+ I I LVE I+ GS + +E A L LC+ + + L
Sbjct: 509 LSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTE-QTLAA 567
Query: 423 REGGI-PPLVALSQTGSVRAKHKAETLLGYLREPRQE 458
+ G+ L LS+TG+ RAK KA ++L + + ++
Sbjct: 568 KAAGVEDALKELSETGTDRAKRKASSILELMHQANED 604
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Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/271 (46%), Positives = 175/271 (64%), Gaps = 2/271 (0%)
Query: 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS-DPWTQEHSVTALL 244
L S S+ +R+A +++R L+K +DNR+LI E+GA+P LV LL D TQE++VT +L
Sbjct: 350 LSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCIL 409
Query: 245 NLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIP 304
NLS++E+NK LI AGA+ S+V VL+ G+ +++NAA L SL+L +ENK IGA GAI
Sbjct: 410 NLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIM 469
Query: 305 PLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLA-GQGEGMAEKAM 363
LV LL YGS RGKKDA T L+ LC + NK RAV AG V+PLV ML E MA++A+
Sbjct: 470 ALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEAL 529
Query: 364 VVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR 423
+LS+LA + AI+ N I L++ ++ + +E A LL LC + + R
Sbjct: 530 TILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGR 589
Query: 424 EGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454
G + PL+ LS+ G+ RAK KA +LL LR+
Sbjct: 590 LGAVVPLMELSRDGTERAKRKANSLLELLRK 620
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 173/274 (63%), Gaps = 3/274 (1%)
Query: 194 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNK 253
+RSAA ++RLLAK +DNRV I E+GA+P LV LL D QEHSVTALLNLS+ ENNK
Sbjct: 369 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNK 428
Query: 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG 313
I +AGAI +V VLK G+ +++NAA L SL++I+ENK +IGA GAIPPLV LL G
Sbjct: 429 GAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEG 488
Query: 314 SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373
+ RGKKDA T L+ LC + NK +A+ AG + L +L G GM ++A+ +L++L+
Sbjct: 489 TQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHP 548
Query: 374 EGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVAL 433
EG+ I + + +LVE I GS + +E A L+ LC+ ++ + G + PL+ L
Sbjct: 549 EGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDL 608
Query: 434 SQTGSVRAKHKAETLL---GYLREPRQEGPSSSP 464
+ G+ R K KA LL L E ++E S P
Sbjct: 609 AGNGTDRGKRKAAQLLERISRLAEQQKETAVSQP 642
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/280 (43%), Positives = 174/280 (62%), Gaps = 1/280 (0%)
Query: 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEH 238
++ + L S S +R+A +++R L+K +DNR+LI E+GA+P LV LL D TQE+
Sbjct: 333 IRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQEN 392
Query: 239 SVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG 298
++T +LNLS++ENNK LI AGA+ S+V VL+ GT +++NAA L SL+L +ENK IG
Sbjct: 393 AITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIG 452
Query: 299 ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEG- 357
GAIP LV LL G+ RGKKDA T L+ LC NK RAV AG V LV ML+
Sbjct: 453 GSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHR 512
Query: 358 MAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKN 417
M ++A+ +LS+LA + + AIV+ N + AL+ ++ + +E A LL LC +
Sbjct: 513 MVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEK 572
Query: 418 RGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457
+ R G + PL+ LS+ G+ R K KA +LL LR+ Q
Sbjct: 573 LITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLRKACQ 612
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (530), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 126/282 (44%), Positives = 176/282 (62%)
Query: 183 IDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTA 242
++ L + + +R+AA +LRLLAK DNRV I E+GA+P LV LL DP TQEHSVTA
Sbjct: 351 LEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTA 410
Query: 243 LLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGA 302
LLNLS++E NK I +AGAI +V VLK G+ +++NAA L SL++I+ENK +IGA GA
Sbjct: 411 LLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGA 470
Query: 303 IPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKA 362
I L+SLL G+ RGKKDA T ++ LC + NK RAV G V PL +L G GM ++A
Sbjct: 471 IQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEA 530
Query: 363 MVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLV 422
+ +L++L+ EG+ AI E I LVE I GS + +E A L LC +++ +
Sbjct: 531 LAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAAAILWYLCIGNIERLNVAR 590
Query: 423 REGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPSSSP 464
G L L++ G+ RAK KA +LL +++ ++ P
Sbjct: 591 EVGADVALKELTENGTDRAKRKAASLLELIQQTEGVAVTTVP 632
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Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (488), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 167/258 (64%), Gaps = 2/258 (0%)
Query: 194 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS-DPWTQEHSVTALLNLSL-HEN 251
+RSAA ++RLLAK + NRV I SGA+P LV LL S D TQEH+VT++LNLS+ EN
Sbjct: 372 RRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQEHAVTSILNLSICQEN 431
Query: 252 NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLI 311
++ ++GA+ +V+VL+ G+ +++NAA L SL++I+ENK +IGA GAIPPLV+LL
Sbjct: 432 KGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIGAAGAIPPLVTLLS 491
Query: 312 YGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371
GS RGKKDA T L+ LC + NK +AV AG V L+ +L GM ++++ +L++L+
Sbjct: 492 EGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDESLSILAILSS 551
Query: 372 IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLV 431
+G+ + + + LV+ I GS + KE + L+ LC+ + ++ + G + L+
Sbjct: 552 HPDGKSEVGAADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIMDLLI 611
Query: 432 ALSQTGSVRAKHKAETLL 449
+++ G+ R K KA LL
Sbjct: 612 EMAENGTDRGKRKAAQLL 629
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 192 bits (487), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 119/258 (46%), Positives = 166/258 (64%), Gaps = 2/258 (0%)
Query: 194 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNK 253
+RSAAA+LRLLAK ++NR+ I E+GA+P L+ LL SD TQEH+VTALLNLS+HE+NK
Sbjct: 384 QRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNK 443
Query: 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG 313
I ++GA+ S+V+VLK G+ +++NAA L SL++I+E K +IG GAIP LV LL G
Sbjct: 444 ASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEG 503
Query: 314 SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373
S RGKKDA L+ LC + NK RA+ AG V ++G++ + ++AM +LS+L+
Sbjct: 504 SQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHP 563
Query: 374 EGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLL-VREGGI-PPLV 431
EG+ AI + LVE I G+ + +E A +L LC+ L +E GI PL
Sbjct: 564 EGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLR 623
Query: 432 ALSQTGSVRAKHKAETLL 449
L+ G+ R K KA LL
Sbjct: 624 ELALNGTDRGKRKAVQLL 641
|
E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | ||||||
| 255574637 | 467 | ubiquitin-protein ligase, putative [Rici | 0.991 | 0.985 | 0.800 | 0.0 | |
| 449434030 | 459 | PREDICTED: U-box domain-containing prote | 0.987 | 0.997 | 0.789 | 0.0 | |
| 359497760 | 452 | PREDICTED: U-box domain-containing prote | 0.974 | 1.0 | 0.778 | 0.0 | |
| 356532626 | 458 | PREDICTED: U-box domain-containing prote | 0.982 | 0.995 | 0.771 | 0.0 | |
| 356555746 | 457 | PREDICTED: U-box domain-containing prote | 0.976 | 0.991 | 0.765 | 0.0 | |
| 357447947 | 460 | U-box domain-containing protein [Medicag | 0.982 | 0.991 | 0.757 | 0.0 | |
| 297800492 | 472 | predicted protein [Arabidopsis lyrata su | 1.0 | 0.983 | 0.733 | 0.0 | |
| 240255941 | 472 | armadillo/beta-catenin-like repeat-conta | 0.997 | 0.980 | 0.733 | 0.0 | |
| 26452478 | 472 | unknown protein [Arabidopsis thaliana] | 0.997 | 0.980 | 0.729 | 0.0 | |
| 224139496 | 474 | predicted protein [Populus trichocarpa] | 0.980 | 0.959 | 0.702 | 1e-173 |
| >gi|255574637|ref|XP_002528228.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223532345|gb|EEF34143.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/471 (80%), Positives = 412/471 (87%), Gaps = 11/471 (2%)
Query: 1 MVSLEDSQSTSNRFPLRQ---NLYTPPSASSTKIHRSIGRSMRTIRSNLYQTDNS---CS 54
MVSLEDS S +NRFPL + N Y P S S+T+I+R +GRSMRTIRSN YQ DNS CS
Sbjct: 1 MVSLEDSHSNANRFPLTRTNNNFYNPSSVSNTRINRHVGRSMRTIRSNFYQNDNSGSCCS 60
Query: 55 FVSVPDN-SGYLSENLTESVIDMRLGELASKTNDAKSVKSTISEDDYLNVSQAFSDFSVC 113
F + DN S Y+SENLT+SVIDMRLGELAS+ + + + S++D+L++SQAFSDFS C
Sbjct: 61 FTTAADNDSTYVSENLTDSVIDMRLGELASRNSKTEKSAKSSSDEDFLDISQAFSDFSAC 120
Query: 114 SSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPE 173
SSDISGELQRLA LPSPEN + N + EPEPEPCLGFLQRENFSTEI+ESISPE
Sbjct: 121 SSDISGELQRLACLPSPENAPKAENSESA----EPEPEPCLGFLQRENFSTEIMESISPE 176
Query: 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDP 233
DLQP VKIC+D LQS SVA+KRSAAAKLRLLAKNRSDNR LIGESGA+PAL+PLL+CSDP
Sbjct: 177 DLQPAVKICVDSLQSPSVAVKRSAAAKLRLLAKNRSDNRALIGESGAIPALIPLLRCSDP 236
Query: 234 WTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN 293
WTQEH+VTALLNLSLHE NK LITN GAIKSLVYVLKTGT TSKQNAACAL+SLAL+EEN
Sbjct: 237 WTQEHAVTALLNLSLHEENKGLITNNGAIKSLVYVLKTGTGTSKQNAACALLSLALVEEN 296
Query: 294 KSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAG 353
KSSIGACGAIPPLVSLLI GSSRGKKDALTTLYKLCS+KQNKERAVSAGAV+PLVGM+A
Sbjct: 297 KSSIGACGAIPPLVSLLISGSSRGKKDALTTLYKLCSIKQNKERAVSAGAVKPLVGMVAE 356
Query: 354 QGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413
QG GMAEKAMVVLS LA I EGREAIVEE GIAALVEAIEDGSVKGKEFAVLTLLQLCA+
Sbjct: 357 QGTGMAEKAMVVLSSLAAIEEGREAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCAD 416
Query: 414 SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPSSSP 464
SV+NRGLLVREGGIPPLVALSQTG+VRAKHKAETLLGYLREPRQE SSSP
Sbjct: 417 SVRNRGLLVREGGIPPLVALSQTGTVRAKHKAETLLGYLREPRQEASSSSP 467
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434030|ref|XP_004134799.1| PREDICTED: U-box domain-containing protein 4-like [Cucumis sativus] gi|449524460|ref|XP_004169241.1| PREDICTED: U-box domain-containing protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/465 (78%), Positives = 411/465 (88%), Gaps = 7/465 (1%)
Query: 1 MVSLEDSQSTSNRFPLRQNLYTPPSASSTKIHRSIGRSMRTIRSNLYQTDNSCSFV-SVP 59
MVSLEDS STSNRFPL +N Y+P S +S+KI R+IGRSMRTIRSN +Q DNSC+F SV
Sbjct: 1 MVSLEDSHSTSNRFPLTRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60
Query: 60 DNSGYLSENLTESVIDMRLGELASKTNDAKSVKSTISEDDYLNVSQAFSDFSVCSSDISG 119
SG +SENLT+SVID+RLGELAS++ S +S+ E D+L +S AFSDFS CSSDISG
Sbjct: 61 AKSGCVSENLTDSVIDLRLGELASRS-PKWSKQSSEQEQDFLELSHAFSDFSACSSDISG 119
Query: 120 ELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTV 179
ELQRLASLPS + ++ E+ +PEPEPCLGFLQRENFSTEIIESISPEDLQPTV
Sbjct: 120 ELQRLASLPSMAVVPQREGEDG-----DPEPEPCLGFLQRENFSTEIIESISPEDLQPTV 174
Query: 180 KICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHS 239
KICIDGLQSSS+A+KRSAAAKLRLLAKNRSDNRVLIGESGAVPAL+PLL+ +DPWTQEH+
Sbjct: 175 KICIDGLQSSSIAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHA 234
Query: 240 VTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA 299
VTALLNLSLHE+NK +ITNAGA+KSLVY LKTGTETSKQNAACALMSLAL+EENK+SIG
Sbjct: 235 VTALLNLSLHESNKVIITNAGAVKSLVYALKTGTETSKQNAACALMSLALLEENKTSIGV 294
Query: 300 CGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMA 359
CGAIPPLVSLL+ GS+RGKKDALTTLYKLCS+K NKERAV+AGAV+PLV ++A QG G+A
Sbjct: 295 CGAIPPLVSLLLNGSNRGKKDALTTLYKLCSIKPNKERAVTAGAVKPLVALVAEQGTGLA 354
Query: 360 EKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRG 419
EKAMVVLS LAGI EG++AIVEE GIAALVEAIEDGS+KGKEFAVLTLLQLC ESV+NRG
Sbjct: 355 EKAMVVLSSLAGIQEGKDAIVEEGGIAALVEAIEDGSLKGKEFAVLTLLQLCVESVRNRG 414
Query: 420 LLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPSSSP 464
LLV EGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ SSSP
Sbjct: 415 LLVSEGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQVASSSSP 459
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497760|ref|XP_003635632.1| PREDICTED: U-box domain-containing protein 4-like [Vitis vinifera] gi|147866196|emb|CAN79837.1| hypothetical protein VITISV_007520 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/464 (77%), Positives = 405/464 (87%), Gaps = 12/464 (2%)
Query: 1 MVSLEDSQSTSNRFPLRQNLYTPPSASSTKIHRSIGRSMRTIRSNLYQTDNSCSFVSVPD 60
MVSLE+S S SN + LY S SS KI RS+GRSMRTIRSNLYQTD SCSF D
Sbjct: 1 MVSLEESHSNSNVLASSRTLYNTSSTSSIKIQRSLGRSMRTIRSNLYQTDRSCSFA---D 57
Query: 61 NSGYLSENLTESVIDMRLGELASKTNDAKSVKSTISEDDYLNVSQAFSDFSVCSSDISGE 120
S +SENLT+SVIDMRLGELAS++N KS +S +++YL++S AFSDFS CSSDISGE
Sbjct: 58 KSSCVSENLTDSVIDMRLGELASRSN--KSAQSPSQDEEYLDLSHAFSDFSACSSDISGE 115
Query: 121 LQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVK 180
LQRLASLP E++ + NE++ +PEPEPCLGFLQRENFSTEIIESISPEDLQPTVK
Sbjct: 116 LQRLASLPPSEDVAK--NESS-----DPEPEPCLGFLQRENFSTEIIESISPEDLQPTVK 168
Query: 181 ICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSV 240
+C+DGLQS SVA+KRSAAAKLRLLAKNR+DNR LIGESGAVPAL+PLL+C+DPWTQEH+V
Sbjct: 169 MCVDGLQSPSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPALIPLLRCTDPWTQEHAV 228
Query: 241 TALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGAC 300
TALLNLSLHE NKTLITNAGAIKSLVYVLKTGTETSKQNAACAL++L+LI++NK SIGAC
Sbjct: 229 TALLNLSLHEENKTLITNAGAIKSLVYVLKTGTETSKQNAACALLNLSLIDDNKISIGAC 288
Query: 301 GAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAE 360
GAIPPLVSLL+ GS+RGKKDALTTLYKLCS+KQNKERAVSAGAV+ LV ++A QG G+AE
Sbjct: 289 GAIPPLVSLLLNGSNRGKKDALTTLYKLCSMKQNKERAVSAGAVKLLVELVAEQGTGLAE 348
Query: 361 KAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGL 420
KAMV+LS LA I EGR AIVEE GI ALVEAIEDGSVKGKEFAVLTLL LCA+SV+NRGL
Sbjct: 349 KAMVILSSLAAIPEGRTAIVEEGGIPALVEAIEDGSVKGKEFAVLTLLLLCADSVRNRGL 408
Query: 421 LVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPSSSP 464
LVREGGIPPLVALSQTG+ RAKHKAETLLGYLREPRQE +SSP
Sbjct: 409 LVREGGIPPLVALSQTGTARAKHKAETLLGYLREPRQEASTSSP 452
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532626|ref|XP_003534872.1| PREDICTED: U-box domain-containing protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/463 (77%), Positives = 404/463 (87%), Gaps = 7/463 (1%)
Query: 1 MVSLEDSQSTSNRFPLRQNLYTPPSASSTKIHRSIGRSMRTIRSNLYQTDNSCSFVSVPD 60
MVSLE+S+S S+RFPL ++ Y S+ S+K R IGRSMRTIRS+ +Q DNS S S +
Sbjct: 1 MVSLEESRSNSSRFPLARS-YQYHSSVSSKTQRHIGRSMRTIRSSFFQDDNSSSCCSFTE 59
Query: 61 NSGYLSENLTESVIDMRLGELASKTNDAKSVKSTISEDDYLNVSQAFSDFSVCSSDISGE 120
S LSENLT+SV+D+RLGELA + ++KSVKS+ +E+D L++SQAFSDFS CSSDISGE
Sbjct: 60 KSTCLSENLTDSVVDLRLGELALR--NSKSVKSSPAEEDLLDLSQAFSDFSACSSDISGE 117
Query: 121 LQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVK 180
LQRLA+LPSP+ + +N ELE EP C+GFLQRENFSTEIIESISPEDLQPTVK
Sbjct: 118 LQRLATLPSPKK--SDVSGDNEAPELEIEP--CMGFLQRENFSTEIIESISPEDLQPTVK 173
Query: 181 ICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSV 240
+CIDGLQS SVA+KRSAAAKLRLLAKNR+DNRVLI ESGAVP LVPLL+CSDPWTQEH+V
Sbjct: 174 MCIDGLQSQSVAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLVPLLRCSDPWTQEHAV 233
Query: 241 TALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGAC 300
TALLNLSLHE+NK LITNAGA+KSL+YVLKTGTETSKQNAACAL+SLAL+EENK SIGA
Sbjct: 234 TALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKGSIGAS 293
Query: 301 GAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAE 360
GAIPPLVSLL+ GSSRGKKDALTTLYKLCS++QNKERAVSAGAV+PLV ++A QG GMAE
Sbjct: 294 GAIPPLVSLLLNGSSRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEQGNGMAE 353
Query: 361 KAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGL 420
KAMVVL+ LAGI EG++AIVEE GIAALVEAIEDGSVKGKEFAVLTLLQLC +SV NRG
Sbjct: 354 KAMVVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSVINRGF 413
Query: 421 LVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPSSS 463
LVREGGIPPLVALSQTGS RAKHKAETLL YLREPRQE S+S
Sbjct: 414 LVREGGIPPLVALSQTGSARAKHKAETLLRYLREPRQEAASTS 456
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555746|ref|XP_003546191.1| PREDICTED: U-box domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/465 (76%), Positives = 403/465 (86%), Gaps = 12/465 (2%)
Query: 1 MVSLEDSQSTSNRFPLRQNLYTPPSASSTKIHRSIGRSMRTIRSNLYQTDNS--CSFVSV 58
MVSLE+S+S S+RFPL ++ Y S+ S+K R IGRSMRTIRSN +Q DNS CSF
Sbjct: 1 MVSLEESRSNSSRFPLARS-YQYHSSVSSKTQRQIGRSMRTIRSNFFQDDNSSSCSFT-- 57
Query: 59 PDNSGYLSENLTESVIDMRLGELASKTNDAKSVKSTISEDDYLNVSQAFSDFSVCSSDIS 118
+ S LSENLT+SV+D+RLGELA + ++KSVK + +E++ L++SQAFSDFS CSSDIS
Sbjct: 58 -EKSTCLSENLTDSVVDLRLGELALR--NSKSVKYSPTEEELLDLSQAFSDFSACSSDIS 114
Query: 119 GELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPT 178
GELQRLA+LPSP ++ + + EPE EPC+GFLQRENFSTEIIESISPEDLQPT
Sbjct: 115 GELQRLATLPSP----KKSDFSGENEAPEPEIEPCMGFLQRENFSTEIIESISPEDLQPT 170
Query: 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEH 238
VK+CIDGLQS SVA+KRSAAAKLRLLAKNR+DNRVLI ESGAVP L PLL+CSDPWTQEH
Sbjct: 171 VKMCIDGLQSQSVAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLAPLLRCSDPWTQEH 230
Query: 239 SVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG 298
+VTALLNLSLHE+NK LITNAGA+KSLVYVLKTGTETSKQNAACAL+SLAL+EENKSSIG
Sbjct: 231 AVTALLNLSLHEDNKMLITNAGAVKSLVYVLKTGTETSKQNAACALLSLALVEENKSSIG 290
Query: 299 ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGM 358
A GAIPPLVSLL+ GSSRGKKDALTTLYKLCS++QNKER VSAGAV+PLV ++A QG GM
Sbjct: 291 ASGAIPPLVSLLLNGSSRGKKDALTTLYKLCSVRQNKERTVSAGAVKPLVELVAEQGSGM 350
Query: 359 AEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNR 418
AEKAMVVL+ LAGI EG+ AIVEE GIAALVEAIEDGSVKGKEFAVLTLLQLC +SV+NR
Sbjct: 351 AEKAMVVLNSLAGIQEGKNAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSVRNR 410
Query: 419 GLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPSSS 463
G LVREGGIPPLVALSQTGSVRAKHKAETLL YLRE RQE S+S
Sbjct: 411 GFLVREGGIPPLVALSQTGSVRAKHKAETLLRYLRESRQEAASTS 455
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447947|ref|XP_003594249.1| U-box domain-containing protein [Medicago truncatula] gi|355483297|gb|AES64500.1| U-box domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/466 (75%), Positives = 397/466 (85%), Gaps = 10/466 (2%)
Query: 1 MVSLEDSQSTSNRFPLRQNLYTPPSASSTKIHRSIGRSMRTIRSNLYQTDNS-CSFVSVP 59
MVSLEDS+S SNRFPL + Y S+ S+K R+IGRSMRT RS+++ DNS C+F
Sbjct: 1 MVSLEDSRSNSNRFPLPKT-YQYHSSISSKSQRNIGRSMRTRRSSIFDEDNSSCTFT--- 56
Query: 60 DNSGYLSENLTESVIDMRLGELASKTNDAKSVKSTISEDDYLNVSQAFSDF--SVCSSDI 117
+ S +SENLT+SV+D+RLGELASK + KS KS+ SE D L++SQAFS++ S CSSDI
Sbjct: 57 ERSTCVSENLTDSVVDLRLGELASKNH--KSGKSSTSEQDLLDLSQAFSEYAYSACSSDI 114
Query: 118 SGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQP 177
SGELQRLA+LPSPE EPEPC+GFLQRENFSTEIIESISPEDLQP
Sbjct: 115 SGELQRLATLPSPE-CDGGSGVGGDGVVEVVEPEPCMGFLQRENFSTEIIESISPEDLQP 173
Query: 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237
TVK+C+DGLQSSSVA+KRSAAAKLRLLAKNR+DNRVLIGESGAVP LVPLL+CSDPWTQE
Sbjct: 174 TVKLCVDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVPLLVPLLRCSDPWTQE 233
Query: 238 HSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSI 297
H+VTALLNLSLHE+NK LI NAGA+KSL+YVLKTGTETSKQNAACAL+SLAL+EENKSSI
Sbjct: 234 HAVTALLNLSLHEDNKKLIFNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSI 293
Query: 298 GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEG 357
GA GAIPPLVSLL+ GS+RGKKDALTTLYKLCS+KQNKERAVSAG V+PLV ++A QG G
Sbjct: 294 GASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGVVKPLVELVAEQGNG 353
Query: 358 MAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKN 417
M EKAMVVL+ LAG EG+EAIVEE GIAALVEAIEDGSVKGKEFAVLTLLQLCAESV N
Sbjct: 354 MMEKAMVVLNSLAGFDEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVTN 413
Query: 418 RGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPSSS 463
RGLLVREGGIPPLVALSQ G+ RAKHKAETLL YLRE RQE +S+
Sbjct: 414 RGLLVREGGIPPLVALSQNGTPRAKHKAETLLRYLRESRQEASTST 459
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297800492|ref|XP_002868130.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313966|gb|EFH44389.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/472 (73%), Positives = 402/472 (85%), Gaps = 8/472 (1%)
Query: 1 MVSLED--SQSTSNRFPLRQNLYTPPSASSTKIHRSIGRSMRTIRSNLYQT-DNSCSFV- 56
MVS+E+ S S SNRFPL + Y S S+ ++HR GRSMRT+RSN YQ+ D SCSFV
Sbjct: 1 MVSVEEPLSHSNSNRFPLTTDFYGSSSPSAARLHRQAGRSMRTVRSNFYQSGDQSCSFVG 60
Query: 57 SVPDNSGYLSENLTESVIDMRLGELASKTNDAKSVKST-ISEDDYLNVSQAFSDFSVCSS 115
S+ D S Y SE L++SVIDMRLGELA K +++ + ++ + E+ +L++SQAFSDFS CSS
Sbjct: 61 SIGDKSEYASEFLSDSVIDMRLGELALKNSNSLNSNASSMKEEAFLDISQAFSDFSACSS 120
Query: 116 DISGELQRLASLPSPENILRQPN-ENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174
DISGELQRLA LPSP++ + +N + E E EPCLGFLQRENFSTEIIE ISPED
Sbjct: 121 DISGELQRLACLPSPDSERNESGGDNEAAQDPELEREPCLGFLQRENFSTEIIECISPED 180
Query: 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPW 234
LQPTVK+CIDGL+S+SVAIKRSAAAKLRLLAKNR+DNRVLIGESGA+ AL+PLL+C+DPW
Sbjct: 181 LQPTVKLCIDGLRSTSVAIKRSAAAKLRLLAKNRADNRVLIGESGAIQALIPLLRCNDPW 240
Query: 235 TQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENK 294
TQEH+VTALLNLSLH+ NK +I GAIKSLV+VLKTGTETSKQNAACAL+SLAL+EENK
Sbjct: 241 TQEHAVTALLNLSLHDQNKAVIAAGGAIKSLVWVLKTGTETSKQNAACALLSLALLEENK 300
Query: 295 SSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQ 354
SIGACGAIPPLVSLL+ GS RGKKDALTTLYKLC+L+QNKERAV+AGAV+PLV ++A +
Sbjct: 301 GSIGACGAIPPLVSLLLNGSCRGKKDALTTLYKLCTLQQNKERAVTAGAVKPLVDLVAEE 360
Query: 355 GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414
G GMAEKAMVVLS LA I EG+EAIVEE GIAALVEAIEDGSVKGKEFA+LTLLQLC++S
Sbjct: 361 GTGMAEKAMVVLSSLAAIDEGKEAIVEEGGIAALVEAIEDGSVKGKEFAILTLLQLCSDS 420
Query: 415 VKNRGLLVREGGIPPLVALSQTG--SVRAKHKAETLLGYLREPRQEGPSSSP 464
V+NRGLLVREG IPPLV LSQ+G SVRAK KAE LLGYLREPR+EG SSSP
Sbjct: 421 VRNRGLLVREGAIPPLVGLSQSGSVSVRAKRKAERLLGYLREPRKEGSSSSP 472
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240255941|ref|NP_567501.4| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|332658360|gb|AEE83760.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/473 (73%), Positives = 402/473 (84%), Gaps = 10/473 (2%)
Query: 1 MVSLED--SQSTSNRFPLRQNLYTPPSASSTKIHRSIGRSMRTIRSNLYQT-DNSCSFV- 56
MVS+E+ S S S RFPL + Y S S+ ++HR GRSMRT+RSN YQ+ D SCSFV
Sbjct: 1 MVSVEEPLSHSNSTRFPLTTDFYGSSSPSAARLHRQAGRSMRTVRSNFYQSGDQSCSFVG 60
Query: 57 SVPDNSGYLSENLTESVIDMRLGELASKTNDAKSVKST-ISEDDYLNVSQAFSDFSVCSS 115
S+ D S Y SE L++SVIDMRLGELA K +++ + ++ + E+ +L++SQAFSDFS CSS
Sbjct: 61 SIGDKSEYASEFLSDSVIDMRLGELALKNSNSLNSNASSMKEEAFLDISQAFSDFSACSS 120
Query: 116 DISGELQRLASLPSPENILRQPNENNCQAELEPE--PEPCLGFLQRENFSTEIIESISPE 173
DISGELQRLA LPSPE + +N +AE +PE EPCLGFLQRENFSTEIIE ISPE
Sbjct: 121 DISGELQRLACLPSPEADRNESGGDN-EAEHDPELEREPCLGFLQRENFSTEIIECISPE 179
Query: 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDP 233
DLQPTVK+CIDGL+SSSVAIKRSAAAKLRLLAKNR+DNRVLIGESGA+ AL+PLL+C+DP
Sbjct: 180 DLQPTVKLCIDGLRSSSVAIKRSAAAKLRLLAKNRADNRVLIGESGAIQALIPLLRCNDP 239
Query: 234 WTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN 293
WTQEH+VTALLNLSLH+ NK +I GAIKSLV+VLKTGTETSKQNAACAL+SLAL+EEN
Sbjct: 240 WTQEHAVTALLNLSLHDQNKAVIAAGGAIKSLVWVLKTGTETSKQNAACALLSLALLEEN 299
Query: 294 KSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAG 353
K SIGACGAIPPLVSLL+ GS RGKKDALTTLYKLC+L+QNKERAV+AGAV+PLV ++A
Sbjct: 300 KGSIGACGAIPPLVSLLLNGSCRGKKDALTTLYKLCTLQQNKERAVTAGAVKPLVDLVAE 359
Query: 354 QGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413
+G GMAEKAMVVLS LA I +G+EAIVEE GIAALVEAIEDGSVKGKEFA+LTLLQLC++
Sbjct: 360 EGTGMAEKAMVVLSSLAAIDDGKEAIVEEGGIAALVEAIEDGSVKGKEFAILTLLQLCSD 419
Query: 414 SVKNRGLLVREGGIPPLVALSQTG--SVRAKHKAETLLGYLREPRQEGPSSSP 464
SV+NRGLLVREG IPPLV LSQ+G SVRAK KAE LLGYLREPR+E SSSP
Sbjct: 420 SVRNRGLLVREGAIPPLVGLSQSGSVSVRAKRKAERLLGYLREPRKEASSSSP 472
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|26452478|dbj|BAC43324.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/473 (72%), Positives = 400/473 (84%), Gaps = 10/473 (2%)
Query: 1 MVSLED--SQSTSNRFPLRQNLYTPPSASSTKIHRSIGRSMRTIRSNLYQT-DNSCSFV- 56
MVS+E+ S S S RFPL + Y S S+ ++HR GRSMRT+RSN YQ+ D SCSFV
Sbjct: 1 MVSVEEPLSHSNSTRFPLTTDFYGSSSPSAARLHRQAGRSMRTVRSNFYQSGDQSCSFVG 60
Query: 57 SVPDNSGYLSENLTESVIDMRLGELASKTNDAKSVKST-ISEDDYLNVSQAFSDFSVCSS 115
S+ D S Y SE L++SVIDMRLGELA K +++ + ++ + E+ +L++SQAFSDFS CSS
Sbjct: 61 SIGDKSEYASEFLSDSVIDMRLGELALKNSNSLNSNASSMKEEAFLDISQAFSDFSACSS 120
Query: 116 DISGELQRLASLPSPENILRQPNENNCQAELEPE--PEPCLGFLQRENFSTEIIESISPE 173
DISGELQRLA LPSPE + +N +AE +PE EPCLGFLQRENFSTEIIE ISPE
Sbjct: 121 DISGELQRLACLPSPEADRNESGGDN-EAEHDPELEREPCLGFLQRENFSTEIIECISPE 179
Query: 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDP 233
DLQPTVK+CIDGL+SSSVAIKRSAAAKLRLLAKNR+DNRVLIGESGA+ AL+PLL+C+DP
Sbjct: 180 DLQPTVKLCIDGLRSSSVAIKRSAAAKLRLLAKNRADNRVLIGESGAIQALIPLLRCNDP 239
Query: 234 WTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN 293
WTQE +VTALLNLSLH+ NK +I GAIKSLV+VLKTGTETSKQNAACAL+SLAL+EEN
Sbjct: 240 WTQERAVTALLNLSLHDQNKAVIAAGGAIKSLVWVLKTGTETSKQNAACALLSLALLEEN 299
Query: 294 KSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAG 353
K SIGACGAIPPLVSLL+ GS RGKKDALT LYKLC+L+QNKERAV+AGAV+PLV ++A
Sbjct: 300 KGSIGACGAIPPLVSLLLNGSCRGKKDALTALYKLCTLQQNKERAVTAGAVKPLVDLVAE 359
Query: 354 QGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413
+G GMAEKAMVVLS LA I +G+EAIVEE GIAALVEAIEDGSVKGKEFA+LTLLQLC++
Sbjct: 360 EGTGMAEKAMVVLSSLAAIDDGKEAIVEEGGIAALVEAIEDGSVKGKEFAILTLLQLCSD 419
Query: 414 SVKNRGLLVREGGIPPLVALSQTG--SVRAKHKAETLLGYLREPRQEGPSSSP 464
SV+NRGLLVREG IPPLV LSQ+G SVRAK KAE LLGYLREPR+E SSSP
Sbjct: 420 SVRNRGLLVREGAIPPLVGLSQSGSVSVRAKRKAERLLGYLREPRKEASSSSP 472
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139496|ref|XP_002323140.1| predicted protein [Populus trichocarpa] gi|222867770|gb|EEF04901.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust.
Identities = 337/480 (70%), Positives = 387/480 (80%), Gaps = 25/480 (5%)
Query: 1 MVSLEDSQS---TSNRFPLRQNLYTPPSASSTKIHRSIGRSMRTIRSNLYQTDNSCSFVS 57
MVSLEDS S TS+RFPL T +SS IHR +GRSMRT+RS L+QTD+S F +
Sbjct: 1 MVSLEDSHSQHSTSSRFPL-----TSSPSSSKIIHRHVGRSMRTVRSTLFQTDSS--FSN 53
Query: 58 VPDNSGYLSENLTESVIDMRLGELAS----KTNDAKSVKSTISE---------DDYLNVS 104
++ ++SENLTESVIDMRLGELA+ +N+ ++K+ S +++L++S
Sbjct: 54 SAASTPFVSENLTESVIDMRLGELAATLSIHSNNISNIKNKTSSSSASPAKSAEEFLDIS 113
Query: 105 QAFSDFSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFST 164
+AFSDFS CSSDISGELQRLA LPS + R E EPC GFLQRE+FST
Sbjct: 114 EAFSDFSGCSSDISGELQRLACLPSSP-LHRDGELERKNPSTEIVAEPCHGFLQRESFST 172
Query: 165 EIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPAL 224
EIIESISPEDLQPTVKIC+DGLQS S+ ++RSAA KLR LAKNR+DNR LIGESGA+ AL
Sbjct: 173 EIIESISPEDLQPTVKICVDGLQSPSILVRRSAAEKLRFLAKNRADNRALIGESGAISAL 232
Query: 225 VPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACAL 284
+PLLK SDPW QEH+VTALLNLSL+E NK IT +GAIKSLVYVLKTGTE +KQNAACAL
Sbjct: 233 IPLLKQSDPWAQEHAVTALLNLSLYEENKKKITKSGAIKSLVYVLKTGTENAKQNAACAL 292
Query: 285 MSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAV 344
+SLALIE NKSSIGACGAIPPLVSLLI GS+RGKKDALTTLYK+CS+KQNKERAV AGAV
Sbjct: 293 LSLALIEVNKSSIGACGAIPPLVSLLINGSNRGKKDALTTLYKICSIKQNKERAVIAGAV 352
Query: 345 RPLVGMLAGQGEG-MAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFA 403
+PLVGM+ G G MAEKAMVVLS LA I EGR+AIVEE GIAALVEAIEDGSVKGKEFA
Sbjct: 353 KPLVGMVVEAGAGMMAEKAMVVLSSLAAIQEGRDAIVEEGGIAALVEAIEDGSVKGKEFA 412
Query: 404 VLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPSSS 463
V+TLLQLC++SV+NRGLLVREG IPPLVALSQ GS+R+K+KAE LLGYLREPRQE SSS
Sbjct: 413 VVTLLQLCSDSVRNRGLLVREGAIPPLVALSQNGSIRSKNKAERLLGYLREPRQEAASSS 472
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | ||||||
| TAIR|locus:2130699 | 472 | AT4G16490 "AT4G16490" [Arabido | 0.997 | 0.980 | 0.704 | 1.3e-164 | |
| TAIR|locus:2096687 | 355 | AT3G01400 [Arabidopsis thalian | 0.633 | 0.828 | 0.481 | 4.2e-63 | |
| TAIR|locus:2045334 | 829 | PUB4 "plant U-box 4" [Arabidop | 0.784 | 0.439 | 0.410 | 2.2e-59 | |
| TAIR|locus:2178818 | 357 | AT5G58680 "AT5G58680" [Arabido | 0.644 | 0.837 | 0.438 | 2.5e-58 | |
| TAIR|locus:2158252 | 707 | AT5G67340 [Arabidopsis thalian | 0.622 | 0.408 | 0.474 | 4e-58 | |
| TAIR|locus:2102455 | 760 | AT3G54790 [Arabidopsis thalian | 0.596 | 0.364 | 0.453 | 1.6e-55 | |
| UNIPROTKB|Q5VRH9 | 611 | PUB12 "U-box domain-containing | 0.534 | 0.405 | 0.468 | 2.9e-54 | |
| TAIR|locus:2082682 | 632 | PUB14 "plant U-box 14" [Arabid | 0.528 | 0.387 | 0.469 | 5.1e-51 | |
| TAIR|locus:2013990 | 628 | AT1G71020 [Arabidopsis thalian | 0.594 | 0.439 | 0.431 | 1.3e-50 | |
| TAIR|locus:2075140 | 660 | PUB13 "plant U-box 13" [Arabid | 0.551 | 0.387 | 0.447 | 2.5e-49 |
| TAIR|locus:2130699 AT4G16490 "AT4G16490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1602 (569.0 bits), Expect = 1.3e-164, P = 1.3e-164
Identities = 333/473 (70%), Positives = 384/473 (81%)
Query: 1 MVSLED--SQSTSNRFPLRQNLYTPPSASSTKIHRSIGRSMRTIRSNLYQT-DNSCSFV- 56
MVS+E+ S S S RFPL + Y S S+ ++HR GRSMRT+RSN YQ+ D SCSFV
Sbjct: 1 MVSVEEPLSHSNSTRFPLTTDFYGSSSPSAARLHRQAGRSMRTVRSNFYQSGDQSCSFVG 60
Query: 57 SVPDNSGYLSENLTESVIDMRLGELASK-TNDAKSVKSTISEDDYLNVSQAFSDFSVCSS 115
S+ D S Y SE L++SVIDMRLGELA K +N S S++ E+ +L++SQAFSDFS CSS
Sbjct: 61 SIGDKSEYASEFLSDSVIDMRLGELALKNSNSLNSNASSMKEEAFLDISQAFSDFSACSS 120
Query: 116 DISGELQRLASLPSPENILRQPNENNCQAELEPE--PEPCLGFLQRENFSTEIIESISPE 173
DISGELQRLA LPSPE + +N +AE +PE EPCLGFLQRENFSTEIIE ISPE
Sbjct: 121 DISGELQRLACLPSPEADRNESGGDN-EAEHDPELEREPCLGFLQRENFSTEIIECISPE 179
Query: 174 DLQPTVKICIDGLQSSSVXXXXXXXXXXXXXXXXXSDNRVLIGESGAVPALVPLLKCSDP 233
DLQPTVK+CIDGL+SSSV +DNRVLIGESGA+ AL+PLL+C+DP
Sbjct: 180 DLQPTVKLCIDGLRSSSVAIKRSAAAKLRLLAKNRADNRVLIGESGAIQALIPLLRCNDP 239
Query: 234 WTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN 293
WTQEH+VTALLNLSLH+ NK +I GAIKSLV+VLKTGTETSKQNAACAL+SLAL+EEN
Sbjct: 240 WTQEHAVTALLNLSLHDQNKAVIAAGGAIKSLVWVLKTGTETSKQNAACALLSLALLEEN 299
Query: 294 KSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAG 353
K SIGACGAIPPLVSLL+ GS RGKKDALTTLYKLC+L+QNKERAV+AGAV+PLV ++A
Sbjct: 300 KGSIGACGAIPPLVSLLLNGSCRGKKDALTTLYKLCTLQQNKERAVTAGAVKPLVDLVAE 359
Query: 354 QGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413
+G GMAEKAMVVLS LA I +G+EAIVEE GIAALVEAIEDGSVKGKEFA+LTLLQLC++
Sbjct: 360 EGTGMAEKAMVVLSSLAAIDDGKEAIVEEGGIAALVEAIEDGSVKGKEFAILTLLQLCSD 419
Query: 414 SVKNRGLLVREGGIPPLVALSQTGSV--RAKHKAETLLGYLREPRQEGPSSSP 464
SV+NRGLLVREG IPPLV LSQ+GSV RAK KAE LLGYLREPR+E SSSP
Sbjct: 420 SVRNRGLLVREGAIPPLVGLSQSGSVSVRAKRKAERLLGYLREPRKEASSSSP 472
|
|
| TAIR|locus:2096687 AT3G01400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 142/295 (48%), Positives = 187/295 (63%)
Query: 163 STEIIESISPEDLQPTVKICIDGLQSS-SVXXXXXXXXXXXXXXXXXSDNRVLIGESGAV 221
S ++ S + E+ + + L SS S+ +NR+ I ++GA+
Sbjct: 48 SRRLLLSCASENSDDLINHLVSHLDSSYSIDEQKQAAMEIRLLSKNKPENRIKIAKAGAI 107
Query: 222 PALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAA 281
L+ L+ SD QE+ VTA+LNLSL + NK I ++GAIK LV LK GT T+K+NAA
Sbjct: 108 KPLISLISSSDLQLQEYGVTAILNLSLCDENKESIASSGAIKPLVRALKMGTPTAKENAA 167
Query: 282 CALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSA 341
CAL+ L+ IEENK +IG GAIP LV+LL G R KKDA T LY LCS K+NK RAV +
Sbjct: 168 CALLRLSQIEENKVAIGRSGAIPLLVNLLETGGFRAKKDASTALYSLCSAKENKIRAVQS 227
Query: 342 GAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKE 401
G ++PLV ++A G M +K+ V+SLL + E + AIVEE G+ LVE +E G+ + KE
Sbjct: 228 GIMKPLVELMADFGSNMVDKSAFVMSLLMSVPESKPAIVEEGGVPVLVEIVEVGTQRQKE 287
Query: 402 FAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456
AV LLQLC ESV R ++ REG IPPLVALSQ G+ RAK KAE L+ LR+PR
Sbjct: 288 MAVSILLQLCEESVVYRTMVAREGAIPPLVALSQAGTSRAKQKAEALIELLRQPR 342
|
|
| TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 156/380 (41%), Positives = 219/380 (57%)
Query: 90 SVKSTISEDDYLNV-----SQAFSDFSVCSSDISGELQR--LASLPSP--ENILRQ--PN 138
S ST+S +++ S+ + + SSD SGE++ LA+ S L P
Sbjct: 446 SATSTVSNEEFPRADANENSEESAHATPYSSDASGEIRSGPLAATTSAATRRDLSDFSPK 505
Query: 139 --ENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSSSVXXXXX 196
+ + + P LG S E +S + Q VK ++ L+SSS+
Sbjct: 506 FMDRRTRGQFWRRPSERLGSRIVSAPSNETRRDLSEVETQ--VKKLVEELKSSSLDTQRQ 563
Query: 197 XXXXXXXXXXXXSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256
DNR++IG SGA+ LV LL +D TQE++VTALLNLS+++NNK I
Sbjct: 564 ATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAI 623
Query: 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSR 316
+AGAI+ L++VL+ G+ +K+N+A L SL++IEENK IG GAI PLV LL G+ R
Sbjct: 624 ADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPR 683
Query: 317 GKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGR 376
GKKDA T L+ L ++NK V +GAVR L+ ++ GM +KA+ VL+ LA I EGR
Sbjct: 684 GKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLM-DPAAGMVDKAVAVLANLATIPEGR 742
Query: 377 EAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT 436
AI +E GI LVE +E GS +GKE A LLQL S + ++++EG +PPLVALSQ+
Sbjct: 743 NAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQS 802
Query: 437 GSVRAKHKAETLLGYLREPR 456
G+ RA+ KA+ LL Y R R
Sbjct: 803 GTPRAREKAQALLSYFRNQR 822
|
|
| TAIR|locus:2178818 AT5G58680 "AT5G58680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 132/301 (43%), Positives = 188/301 (62%)
Query: 160 ENFSTEIIESISPEDLQPTVKICIDGLQSSS-VXXXXXXXXXXXXXXXXXSDNRVLIGES 218
E+ ++ S + ++ ++ I L+SSS + +NR+ + ++
Sbjct: 43 ESRQRKLFLSCAVDNSDDVIRNLITHLESSSSIEEQKQAAMEIRLLSKNKPENRIKLAKA 102
Query: 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQ 278
GA+ LV L+ SD QE+ VTA+LNLSL + NK +I ++GA+K LV L+ GT T+K+
Sbjct: 103 GAIKPLVSLISSSDLQLQEYGVTAVLNLSLCDENKEMIVSSGAVKPLVNALRLGTPTTKE 162
Query: 279 NAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERA 338
NAACAL+ L+ +EENK +IG GAIP LV+LL G R KKDA T LY LCS +NK RA
Sbjct: 163 NAACALLRLSQVEENKITIGRSGAIPLLVNLLENGGFRAKKDASTALYSLCSTNENKTRA 222
Query: 339 VSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVK 398
V +G ++PLV ++ M +K+ V++LL E + A+VEE G+ LVE +E G+ +
Sbjct: 223 VESGIMKPLVELMIDFESDMVDKSAFVMNLLMSAPESKPAVVEEGGVPVLVEIVEAGTQR 282
Query: 399 GKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVR-AKHKAETLLGYLREPRQ 457
KE +V LLQLC ESV R ++ REG +PPLVALSQ + R AK KAE L+ LR+PRQ
Sbjct: 283 QKEISVSILLQLCEESVVYRTMVAREGAVPPLVALSQGSASRGAKVKAEALIELLRQPRQ 342
Query: 458 E 458
+
Sbjct: 343 Q 343
|
|
| TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 138/291 (47%), Positives = 182/291 (62%)
Query: 168 ESISPEDLQPTVKICIDGLQSSSVXXXXXXXXXXXXXXXXXSDNRVLIGESGAVPALVPL 227
E+ S ++ VK ID L+SSS+ +DNR++I A+P+LV L
Sbjct: 412 ETGSSSSIETEVKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSL 471
Query: 228 LKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTG-TETSKQNAACALMS 286
L +D Q +VT LLNLS+++NNK+LI +GAI L++VLKTG E +K N+A L S
Sbjct: 472 LYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFS 531
Query: 287 LALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRP 346
L++IEE K+ IG GAI PLV LL GS GKKDA T L+ L +NK + + AGAVR
Sbjct: 532 LSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRY 591
Query: 347 LVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLT 406
LV ++ GM EKA+VVL+ LA + EG+ AI EE GI LVE +E GS +GKE A
Sbjct: 592 LVELM-DPAFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSARGKENATAA 650
Query: 407 LLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457
LLQLC S K ++REG IPPLVAL+++G+ R K KA+ LL Y + RQ
Sbjct: 651 LLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQ 701
|
|
| TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 127/280 (45%), Positives = 174/280 (62%)
Query: 178 TVKICIDGLQSSSVXXXXXXXXXXXXXXXXXSDNRVLIGESGAVPALVPLLKCSDPWTQE 237
T+K+ ++ L+S S +NRV IG GA+ L+ LL + TQE
Sbjct: 474 TIKL-VEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQE 532
Query: 238 HSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSI 297
H+VTALLNLS+ E NK +I GAI+ LV+VL TG + +K+N+A +L SL++++ N+ I
Sbjct: 533 HAVTALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERI 592
Query: 298 GACGA-IPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGE 356
G A I LV+LL G+ RGKKDA + L+ L NK R V A AV+ LV +L E
Sbjct: 593 GQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLE 652
Query: 357 GMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416
M +KA+ +L+ L+ + EGR+AIV E GI LVE ++ GS +GKE A LLQLC S K
Sbjct: 653 -MVDKAVALLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPK 711
Query: 417 NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456
L+++EG IPPLVALSQ+G+ RAK KA+ LL + R R
Sbjct: 712 FCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQR 751
|
|
| UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 539 (194.8 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 117/250 (46%), Positives = 162/250 (64%)
Query: 210 DNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVL 269
+NR+ I E+GA+P LV LL SDP TQEH+VTALLNLS+HENNK I ++ AI +V VL
Sbjct: 356 NNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVL 415
Query: 270 KTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLC 329
KTG+ +++NAA L SL++++ENK +IGA GAIPPL++LL GS RGKKDA T ++ LC
Sbjct: 416 KTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIFNLC 475
Query: 330 SLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALV 389
+ NK RAV AG V L+ L GM ++A+ +LS+LAG EG+ I I LV
Sbjct: 476 IYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSEPIPPLV 535
Query: 390 EAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPP-LVALSQTGSVRAKHKAETL 448
E I+ GS + +E A L LC+ + L + G+ L LS+TG+ RAK KA ++
Sbjct: 536 EVIKTGSPRNRENAAAILWLLCSADTEQT-LAAKAAGVEDALKELSETGTDRAKRKASSI 594
Query: 449 LGYLREPRQE 458
L + + ++
Sbjct: 595 LELMHQANED 604
|
|
| TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 115/245 (46%), Positives = 156/245 (63%)
Query: 210 DNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVL 269
DNRV I E+GA+P LV LL DP TQEHSVTALLNLS++E NK I +AGAI +V VL
Sbjct: 378 DNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVL 437
Query: 270 KTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLC 329
K G+ +++NAA L SL++I+ENK +IGA GAI L+SLL G+ RGKKDA T ++ LC
Sbjct: 438 KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLC 497
Query: 330 SLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALV 389
+ NK RAV G V PL +L G GM ++A+ +L++L+ EG+ AI E I LV
Sbjct: 498 IYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAIAEAESIPVLV 557
Query: 390 EAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLL 449
E I GS + +E A L LC +++ + G L L++ G+ RAK KA +LL
Sbjct: 558 EIIRTGSPRNRENAAAILWYLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLL 617
Query: 450 GYLRE 454
+++
Sbjct: 618 ELIQQ 622
|
|
| TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 120/278 (43%), Positives = 167/278 (60%)
Query: 179 VKICIDGLQSSSVXXXXXXXXXXXXXXXXXSDNRVLIGESGAVPALVPLLKCS-DPWTQE 237
++ + L S S+ +DNR+LI E+GA+P LV LL D TQE
Sbjct: 343 IRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQE 402
Query: 238 HSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSI 297
++VT +LNLS++E+NK LI AGA+ S+V VL+ G+ +++NAA L SL+L +ENK I
Sbjct: 403 NAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIII 462
Query: 298 GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLA-GQGE 356
GA GAI LV LL YGS RGKKDA T L+ LC + NK RAV AG V+PLV ML E
Sbjct: 463 GASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSE 522
Query: 357 GMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416
MA++A+ +LS+LA + AI+ N I L++ ++ + +E A LL LC +
Sbjct: 523 RMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTE 582
Query: 417 NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454
+ R G + PL+ LS+ G+ RAK KA +LL LR+
Sbjct: 583 KLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLRK 620
|
|
| TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 116/259 (44%), Positives = 161/259 (62%)
Query: 209 SDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYV 268
+DNRV I E+GA+P LV LL D QEHSVTALLNLS+ ENNK I +AGAI +V V
Sbjct: 384 ADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQV 443
Query: 269 LKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKL 328
LK G+ +++NAA L SL++I+ENK +IGA GAIPPLV LL G+ RGKKDA T L+ L
Sbjct: 444 LKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNL 503
Query: 329 CSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAAL 388
C + NK +A+ AG + L +L G GM ++A+ +L++L+ EG+ I + + +L
Sbjct: 504 CIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSL 563
Query: 389 VEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETL 448
VE I GS + +E A L+ LC+ ++ + G + PL+ L+ G+ R K KA L
Sbjct: 564 VEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQL 623
Query: 449 L---GYLREPRQEGPSSSP 464
L L E ++E S P
Sbjct: 624 LERISRLAEQQKETAVSQP 642
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | Al_scaffold_0007_2581 | annotation not avaliable (472 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 464 | |||
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-12 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-09 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 2e-09 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 3e-09 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 5e-09 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 6e-09 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-08 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-08 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 7e-07 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 9e-07 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-06 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 3e-06 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-05 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 1e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-05 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 2e-05 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 3e-05 | |
| pfam05804 | 708 | pfam05804, KAP, Kinesin-associated protein (KAP) | 6e-05 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 4e-04 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 0.002 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 0.002 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-12
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLN 245
L SS ++R AA L L+ +DN + E+G +PALV LLK D + ++ AL N
Sbjct: 16 LSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRN 75
Query: 246 LSL-HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACAL 284
L+ E+NK ++ AG + LV +L + E ++NA AL
Sbjct: 76 LAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 66/275 (24%), Positives = 118/275 (42%), Gaps = 45/275 (16%)
Query: 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQ 236
P V++ L++ S K +A L L + D R + +GAVPAL+ LLK P Q
Sbjct: 492 PLVQL----LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQ 547
Query: 237 EHS------------------VTALLNLSLHENNKTLITNAG------------------ 260
E + +TALL L E+ ++ G
Sbjct: 548 EIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAA 607
Query: 261 --AIKSLVYVLKTGTETSKQNAACALMSL-ALIEENKSSIGACGAIPPLVSLLIYGSSRG 317
A+++L+ +L + E +++ AA L + + ++ S+ I P + LL +
Sbjct: 608 NDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAV 667
Query: 318 KKDALTTLYKL-CSLKQNKERAVSA-GAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEG 375
+ L L S+K+N++ + +A A++PL+ + +AE+A+ L+ L E
Sbjct: 668 ATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV 727
Query: 376 REAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQL 410
+ E+ I L + +G+++GK A L QL
Sbjct: 728 AAEALAEDIILPLTRVLREGTLEGKRNAARALAQL 762
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 72/285 (25%), Positives = 123/285 (43%), Gaps = 22/285 (7%)
Query: 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEH 238
V++ I L SS + A A L +L +++ I +G +P LV LL+ +E
Sbjct: 448 VQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKED 507
Query: 239 SVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSI 297
S T L NL H E+ + + +AGA+ +L+++LK G ++ AA L L+ ++
Sbjct: 508 SATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTL--TKLVRTADAAT 565
Query: 298 GACGAIPPLVSLLIYGSSRGKKDALTTL-YKLCSLKQN---KERAVSAGAVRPLVGMLAG 353
I L +LL+ K L L + L +E + + A+R L+ +L+
Sbjct: 566 -----ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS 620
Query: 354 QGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413
E EKA S+LA I R+ + E ++ + AV T
Sbjct: 621 SKEETQEKAA---SVLADIFSSRQDLCESLATDEIINPCIK-LLTNNTEAVATQSARALA 676
Query: 414 SV-----KNRGL-LVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
++ +NR + E I PL+ L+++ S+ +A L L
Sbjct: 677 ALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANL 721
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 10/151 (6%)
Query: 224 LVPLLKCSDPWTQEHSVTALLNLSLHENN--KTLITNAGAIKSLVYVLKTGTETSKQNAA 281
LV L+ + QE + AL +L + + L G ++ L+ +L +E +Q A
Sbjct: 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREG-VQLLISLLGLSSE-QQQEYA 466
Query: 282 CALMSL--ALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAV 339
AL+++ ++E+K +I A G IPPLV LL GS + K+D+ T L+ LC ++ V
Sbjct: 467 VALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACV 526
Query: 340 -SAGAVRPLVGMLAG---QGEGMAEKAMVVL 366
SAGAV L+ +L +G+ +A K + L
Sbjct: 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKL 557
|
Length = 2102 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-09
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLAL-IEENKSSIGACGAIPPLVSLLIYG 313
+ AG + +LV +L + E ++ AA AL +L+ +N ++ G +P LV LL
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 314 SSRGKKDALTTLYKLCSLKQNKERAV-SAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA 370
K AL L L + ++ + V AG V LV +L E + + A LS LA
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 6e-09
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 201 LRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALL-------NLSLHENNK 253
L LA+ N++ + E+GA+ AL L + E + + LL L HE
Sbjct: 1172 LTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRILFSSPELRRHE--- 1228
Query: 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG 313
+ GA+ LV VL+ G+ +++ +AA AL L E + S A A+ PLV +L G
Sbjct: 1229 ---SAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPLVEMLNTG 1285
Query: 314 SSRGKKDALTTLYKLCS 330
S + A+ L KL S
Sbjct: 1286 SESEQHAAIGALIKLSS 1302
|
Length = 2102 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-08
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 214 LIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHEN-NKTLITNAGAIKSLVYVLKTG 272
+ ++G +PALV LL SD Q + AL NLS N N + AG + +LV +LK+
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 273 TETSKQNAACALMSLALIEENKSSI-GACGAIPPLVSLL 310
E + A AL +LA E+ I G +P LV+LL
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL 100
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 73/274 (26%), Positives = 124/274 (45%), Gaps = 13/274 (4%)
Query: 172 PEDLQPTVKICIDGLQ--SSSVAIKRSAAAKLRLLAKNRSDNRVLIGE-SGAVPALVPLL 228
P+ +V CI+ L+ SSS K A+L LAK R + R IG S A+P LV LL
Sbjct: 8 PDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLL 67
Query: 229 KCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACAL--MS 286
+ + ++ L L E+ + + G I L+ +LK+G+ +++ AA A+ +S
Sbjct: 68 RSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVS 127
Query: 287 LALIEENKSS--IGACGAIPPLVSLLIYGSSRGKK-DALTT--LYKLCSLKQNKERA-VS 340
+ ++ S G +P L L G+ + K + L T L LC A +
Sbjct: 128 SGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLE 187
Query: 341 AGAVRPLVGMLA-GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDG-SVK 398
AG V LV +L+ G + A A ++ L+ +++ + L++ + G V
Sbjct: 188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVS 247
Query: 399 GKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVA 432
+ A L L ++S + + + GGIP L+
Sbjct: 248 VRAEAAGALEALSSQSKEAKQAIADAGGIPALIN 281
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 81/325 (24%), Positives = 133/325 (40%), Gaps = 51/325 (15%)
Query: 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL-KCSDPWTQE 237
V I + L S + + +AA+ L L + + ++GAV L+ LL + ++ +
Sbjct: 191 VDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA 250
Query: 238 HSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQ---------NAACALMSL 287
+ AL LS + K I +AG I +L+ ++ Q NA AL ++
Sbjct: 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANI 310
Query: 288 -----ALIEENKSSIGACGAIPPLV--------SLLIYGSSRGKKDA---------LTTL 325
ALI + + P+ +L+++ SS A L L
Sbjct: 311 CGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKL 370
Query: 326 YK--------------LCSLKQNKERAVS---AGAVRPLVGMLAGQGEGMAEKAMVVLSL 368
K L SL N + A A + LVG++ + E+ + LS
Sbjct: 371 LKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSS 430
Query: 369 LAGIAEGR-EAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGI 427
L G EA+ G+ L+ + S + +E+AV L L E +++ + GGI
Sbjct: 431 LCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGI 490
Query: 428 PPLVALSQTGSVRAKHKAETLLGYL 452
PPLV L +TGS +AK + T+L L
Sbjct: 491 PPLVQLLETGSQKAKEDSATVLWNL 515
|
Length = 2102 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-07
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 300 CGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ-NKERAVSAGAVRPLVGMLAGQGEGM 358
G +P LVSLL +++A L L + N + V AG + LV +L + E +
Sbjct: 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65
Query: 359 AEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412
+ A+ L LA G + + ++E G+ LV ++ + ++ A L L +
Sbjct: 66 VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLN 245
L+S + ++A LR LA DN++++ E+G VP LV LL S+ Q+++ AL N
Sbjct: 58 LKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSN 117
Query: 246 LS 247
L+
Sbjct: 118 LA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 4/155 (2%)
Query: 220 AVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI---TNAGAIKSLVYVLKTG-TET 275
AV LV +L Q ++ AL+ LS +K L A+++L +L + +
Sbjct: 1274 AVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLE 1333
Query: 276 SKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK 335
K++AA L +S+ A I PL+SLL+ SS ++ + L +L +Q
Sbjct: 1334 LKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLA 1393
Query: 336 ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA 370
E + GAV PLVG++ G + E A+ L L
Sbjct: 1394 ELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLG 1428
|
Length = 2102 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 336 ERAVSAGAVRPLVGMLAGQGEG-MAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED 394
E + AG + LV +L+ E E A + +L AG + +A+VE G+ ALV+ ++
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 395 GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLL 449
+ + A+ L L A N+ +++ GG+P LV L + + + A L
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 209 SDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLS 247
+N+ + E+GAVP LV LL D QE + AL NL+
Sbjct: 2 PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 377 EAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT 436
EA+++ G+ ALV + + A L L A + N +V GG+P LV L ++
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 437 GSVRAKHKAETLLGYL 452
A L L
Sbjct: 61 EDEEVVKAALWALRNL 76
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 2/149 (1%)
Query: 306 LVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSA-GAVRPLVGMLAGQGEGMAEKAMV 364
LV L+ ++ +++ + L LC K A+ V+ L+ +L E E A+
Sbjct: 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVA 468
Query: 365 VLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR 423
+L++L + E + AI GI LV+ +E GS K KE + L LC S R +
Sbjct: 469 LLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVES 528
Query: 424 EGGIPPLVALSQTGSVRAKHKAETLLGYL 452
G +P L+ L + G + + A L L
Sbjct: 529 AGAVPALLWLLKNGGPKGQEIAAKTLTKL 557
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 61/246 (24%), Positives = 99/246 (40%), Gaps = 24/246 (9%)
Query: 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE------HS 239
L SS + AA+ L + +R D L + P +K T+ +
Sbjct: 618 LSSSKEETQEKAASVLADIFSSRQD---LCESLATDEIINPCIKLLTNNTEAVATQSARA 674
Query: 240 VTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA 299
+ AL S+ EN K AIK L+ + K+ + + A CAL +L E + A
Sbjct: 675 LAALSR-SIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALA 733
Query: 300 CGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN----KERAVSAGAVRPLVGMLAGQG 355
I PL +L G+ GK++A L +L K+ G V LV +L
Sbjct: 734 EDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTD 793
Query: 356 EGMAE--KAMVVLSLLAGIAEGRE------AIVEE--NGIAALVEAIEDGSVKGKEFAVL 405
+ +A+ L+LLA G A++ E + + LV + +G ++ A+
Sbjct: 794 LDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIE 853
Query: 406 TLLQLC 411
L +LC
Sbjct: 854 ILSRLC 859
|
Length = 2102 |
| >gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 3/142 (2%)
Query: 210 DNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVL 269
+N+ + E+G + L+ L C ++ L NLS + + N G + LV +L
Sbjct: 318 ENKNEMEENGIIEKLLKLFPCQHEDLLNITLRLLFNLSFDTGLRPKMVNGGLLPKLVSLL 377
Query: 270 KTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGS-SRGKKDALTTLYKL 328
+ A C L L+ ++ KS IP L+ +++ G+ R + + L
Sbjct: 378 --DNDNHHGIALCVLYHLSCDDKAKSMFAYTDCIPMLMKMVLEGTGERVDLELIALCINL 435
Query: 329 CSLKQNKERAVSAGAVRPLVGM 350
K+N + + L+
Sbjct: 436 ALNKRNAQLICEGQGLDLLMER 457
|
This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 68/242 (28%), Positives = 106/242 (43%), Gaps = 25/242 (10%)
Query: 220 AVPALVPLLK-----CSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTE 274
A+P LV LLK P +T L S + NK + AGA+ +L L G +
Sbjct: 1147 AIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGS--DVNKLAMAEAGALDALTKYLSLGPQ 1204
Query: 275 TSKQNAACALM----SLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330
S + AA L+ S + ++S+ GA + LV++L GS + A L +L S
Sbjct: 1205 DSTEEAASELLRILFSSPELRRHESAFGA---VNQLVAVLRLGSRSARYSAARALQELFS 1261
Query: 331 LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL-SLLAGIAEGREAI--VEENGIAA 387
+ ++ ++ AV+PLV ML E A+ L L +G AI VE N +
Sbjct: 1262 AEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALEN 1321
Query: 388 LVEAIE-DGSVKGKEFAVLTLLQLCA---ESVKNRGLLVREGGIPPLVALSQTGSVRAKH 443
L + + D S++ KE A +LC + + R I PL++L + S A+
Sbjct: 1322 LCKILSSDSSLELKEDAA----ELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQE 1377
Query: 444 KA 445
Sbjct: 1378 AG 1379
|
Length = 2102 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 291 EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330
ENK ++ GA+PPLV LL +++A L L +
Sbjct: 2 PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 208 RSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLS 247
+N+ + ++G +PALV LLK D + + AL NLS
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.98 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.98 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.97 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.97 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.96 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.96 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.95 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.86 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.84 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.82 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.8 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.75 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.74 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.68 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.67 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.65 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.64 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.63 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.61 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.6 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.53 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.52 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.49 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.45 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.4 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.4 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.38 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.34 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 99.28 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 99.18 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.17 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 99.16 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 99.14 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 99.11 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.07 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.06 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.05 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 99.02 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 99.02 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.96 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.95 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.92 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 98.91 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.89 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.86 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.84 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.81 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.81 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.76 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 98.76 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.75 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.68 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.67 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.65 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.4 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.39 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 98.36 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.33 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 98.31 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.3 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 98.29 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 98.28 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 98.25 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.23 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.22 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 98.2 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.15 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 98.14 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.13 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 98.1 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.09 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 98.09 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.09 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 98.06 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.06 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.05 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.05 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 98.03 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 98.02 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 98.02 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.01 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 98.01 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.0 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 97.99 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 97.97 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.93 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 97.91 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.85 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.85 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 97.83 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.81 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.76 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 97.68 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 97.62 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 97.6 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.59 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.57 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.52 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.52 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.51 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 97.51 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.51 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.49 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.49 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.49 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 97.48 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.39 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 97.39 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.36 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.34 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.32 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 97.31 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.27 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.25 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.21 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 97.21 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 97.11 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.1 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 97.08 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 97.06 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.05 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 96.98 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 96.98 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 96.97 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.97 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 96.96 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 96.94 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.94 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 96.94 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 96.92 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 96.89 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.85 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 96.75 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 96.72 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 96.71 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 96.67 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 96.64 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.63 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 96.63 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 96.55 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.52 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 96.49 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 96.48 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.48 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.47 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 96.45 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.42 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 96.35 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 96.35 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 96.32 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 96.32 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 96.3 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 96.24 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.23 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 96.21 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 96.06 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.01 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 95.94 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 95.86 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 95.82 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 95.75 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 95.72 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 95.7 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 95.55 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 95.47 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 95.31 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 95.21 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 95.18 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 95.18 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 95.0 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 94.94 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 94.91 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 94.9 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 94.84 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.83 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.83 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 94.73 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 94.64 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 94.59 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 94.38 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 94.35 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 94.35 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 94.33 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 94.3 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 94.26 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 94.15 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 94.14 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 94.14 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 94.08 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 94.07 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 94.05 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 94.01 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 93.94 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 93.74 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 93.59 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 93.51 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 93.5 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 93.41 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 93.21 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 93.05 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 92.74 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 92.7 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 92.67 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 92.65 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 92.36 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 92.3 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 92.19 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 92.19 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 92.02 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 91.79 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 91.76 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 91.37 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 91.35 | |
| KOG1566 | 342 | consensus Conserved protein Mo25 [Function unknown | 91.34 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 91.32 | |
| KOG4464 | 532 | consensus Signaling protein RIC-8/synembryn (regul | 91.26 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 91.2 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 90.91 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 90.36 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 90.31 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 90.25 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 90.07 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 89.45 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 89.42 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 89.3 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 88.73 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 88.7 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 88.45 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 87.98 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 87.88 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 87.63 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 87.44 | |
| PF06685 | 249 | DUF1186: Protein of unknown function (DUF1186); In | 86.98 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 86.9 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 86.72 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 85.78 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 85.49 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 85.17 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 84.98 | |
| PF14726 | 98 | RTTN_N: Rotatin, an armadillo repeat protein, cent | 84.55 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 84.43 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 84.09 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 84.01 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 83.87 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 83.67 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 83.32 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 83.22 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 83.18 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 83.03 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 82.94 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 82.76 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 82.74 | |
| KOG1566 | 342 | consensus Conserved protein Mo25 [Function unknown | 82.62 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 82.46 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 81.62 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 81.29 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 80.34 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=299.25 Aligned_cols=282 Identities=24% Similarity=0.303 Sum_probs=253.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH-H
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT-L 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~-~ 255 (464)
+.++.|+++|.+++..+|+.|+++|++++..+++++..+.+.|+||+|+++|+++++.+++.|+|+|+||+.++++.+ .
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 478999999999999999999999999999989999999999999999999999999999999999999999765544 4
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc--------------------------------------hhhh
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN--------------------------------------KSSI 297 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~--------------------------------------~~~i 297 (464)
+.+.|++|+|+++|++++...+..|+|+|.+|+.+.+. +...
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~ 605 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGS 605 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhh
Confidence 55789999999999999999999999999999643111 0111
Q ss_pred hccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCHh
Q 012413 298 GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA--GIAE 374 (464)
Q Consensus 298 ~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa--~~~~ 374 (464)
...|+++.|+++|.+++..+++.|+++|.+++.. ++.++.++..|++++|+.+|.+.+.+++.+++++|.+++ ..+.
T Consensus 606 ~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~ 685 (2102)
T PLN03200 606 AANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKEN 685 (2102)
T ss_pred hccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHH
Confidence 2468999999999999999999999999999994 567888999999999999999999999999999999999 3455
Q ss_pred hHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 375 GREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
++..+++.|+|++|+++|++.+.+++..|+.+|.+|+.+.+ .+..+.++|++++|+++|++++++.|+.|+|+|..|+.
T Consensus 686 q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 686 RKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred HHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 67788999999999999999999999999999999998764 56777789999999999999999999999999999998
Q ss_pred CCCCC
Q 012413 455 PRQEG 459 (464)
Q Consensus 455 ~~~~~ 459 (464)
+++.+
T Consensus 765 ~~~~~ 769 (2102)
T PLN03200 765 HFPVD 769 (2102)
T ss_pred CCChh
Confidence 88754
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-30 Score=296.43 Aligned_cols=352 Identities=21% Similarity=0.228 Sum_probs=286.8
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCC--Cchh-h-hhcCcccCcccccCCCchhhhhhhcccCchhh-----
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLP--SPEN-I-LRQPNENNCQAELEPEPEPCLGFLQRENFSTE----- 165 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~--~~~~-~-~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~----- 165 (464)
.+..++||..+|++ .+.+|.+++.+|..++..+ +... . ....| .+|.+ +..++..+..+.
T Consensus 97 ~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~G-------aVp~L---v~lL~~gsk~d~~L~~~ 166 (2102)
T PLN03200 97 LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEG-------VVPSL---WDQLQPGNKQDKVVEGL 166 (2102)
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcC-------ChHHH---HHHHhCCchhhHHHHHH
Confidence 47899999999998 8889999999999999876 2221 1 22233 45555 555554322111
Q ss_pred ---HhhhcC---CCCc-----hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCH
Q 012413 166 ---IIESIS---PEDL-----QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDP 233 (464)
Q Consensus 166 ---i~~~~~---~~~~-----~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~ 233 (464)
++..+. ++.+ .+.|+.++..|+++++.++..|+++|.+++.+.++.+..+++.|+||.|+++|++ +++
T Consensus 167 Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~ 246 (2102)
T PLN03200 167 LTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEV 246 (2102)
T ss_pred HHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCCh
Confidence 111110 0100 3588899999999999999999999999998888899999999999999999986 567
Q ss_pred HHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccCC---------HHHHHHHHHHHHHhcccc-c----------
Q 012413 234 WTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGT---------ETSKQNAACALMSLALIE-E---------- 292 (464)
Q Consensus 234 ~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~~---------~~v~~~a~~aL~~Ls~~~-~---------- 292 (464)
.+|+.|+|+|.+|+.+ ++.++.+++.|+||.|++++..++ ..++++|.|+|.||+.+. .
T Consensus 247 ~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~ 326 (2102)
T PLN03200 247 SVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSE 326 (2102)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhc
Confidence 9999999999999996 689999999999999999998654 346999999999988730 0
Q ss_pred -ch--------------------------------------------------------------------hhhhccCCh
Q 012413 293 -NK--------------------------------------------------------------------SSIGACGAI 303 (464)
Q Consensus 293 -~~--------------------------------------------------------------------~~i~~~g~i 303 (464)
.+ ..+.+.+++
T Consensus 327 s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~dai 406 (2102)
T PLN03200 327 SPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAK 406 (2102)
T ss_pred ccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccch
Confidence 00 001122445
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHh
Q 012413 304 PPLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVE 381 (464)
Q Consensus 304 ~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~ 381 (464)
+.|+.||...+.+++..++++|++|+.+ .+.++.+++.|++|.|+.+|.+++..+++.|+++|++|+ ++++++..+++
T Consensus 407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie 486 (2102)
T PLN03200 407 KVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA 486 (2102)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5556666666678899999999999985 578889999999999999999999999999999999999 56788999999
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
.|+++.|+++|.+++..+++.|+|+|+||+.+++..+..+.++|++++|+++|+++++++++.|+|+|.+|...+.
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d 562 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD 562 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999877777778889999999999999999999999999999976543
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-30 Score=263.19 Aligned_cols=342 Identities=22% Similarity=0.246 Sum_probs=287.9
Q ss_pred HHHhhhhhcccchhhhHHHHHHhhcCCC--chhhhhcCcccCcccccCCCchhhhhhhcccCc-----------------
Q 012413 102 NVSQAFSDFSVCSSDISGELQRLASLPS--PENILRQPNENNCQAELEPEPEPCLGFLQRENF----------------- 162 (464)
Q Consensus 102 ~L~~ll~~~~~~r~~a~~~l~~la~~~~--~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~----------------- 162 (464)
-+..++++.+.-+..+..++.++.+... +++.+...| .+|.+ |.+|...++
T Consensus 71 ~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G-------~v~~l---V~~l~~~~~~~lq~eAAWaLTnIAsg 140 (514)
T KOG0166|consen 71 MLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSG-------VVPRL---VEFLSRDDNPTLQFEAAWALTNIASG 140 (514)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcC-------cHHHH---HHHHccCCChhHHHHHHHHHHHHhcC
Confidence 3444566655557788899999887654 445555555 67766 888865442
Q ss_pred hhhHhhhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCH-HHHHHHHH
Q 012413 163 STEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDP-WTQEHSVT 241 (464)
Q Consensus 163 s~~i~~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~-~v~~~A~~ 241 (464)
..+-...+++ .++|+.++.+|.+++.+|++.|+|+|++++.+++.+|..+.+.|++++|+.++..+++ .+.+.+.|
T Consensus 141 tse~T~~vv~---agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW 217 (514)
T KOG0166|consen 141 TSEQTKVVVD---AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATW 217 (514)
T ss_pred chhhcccccc---CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHH
Confidence 1111111111 3688889999999999999999999999999999999999999999999999998776 78999999
Q ss_pred HHHHhcCCCchHHHH-HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCChhhHH
Q 012413 242 ALLNLSLHENNKTLI-TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKK 319 (464)
Q Consensus 242 aL~~La~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~ 319 (464)
+|.||+.+.+....+ .-..++|.|..++.+.|+++...|||+|.+|+.++ +.-+.+++.|++|.|+++|.+.+..++.
T Consensus 218 ~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~ 297 (514)
T KOG0166|consen 218 TLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVT 297 (514)
T ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccccc
Confidence 999999976433332 33679999999999999999999999999999874 6778888999999999999999999999
Q ss_pred HHHHHHHHHhcCcchH-HHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCC
Q 012413 320 DALTTLYKLCSLKQNK-ERAVSAGAVRPLVGMLA-GQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGS 396 (464)
Q Consensus 320 ~A~~aL~nL~~~~~~~-~~iv~~g~v~~Lv~lL~-~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~ 396 (464)
.|+++++|++...+.+ +.+++.|++|.|..++. ++...++.+|+|+|.|++ ++.+..++++++|.+|.|+.+|+..+
T Consensus 298 PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e 377 (514)
T KOG0166|consen 298 PALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE 377 (514)
T ss_pred HHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc
Confidence 9999999999966554 56678999999999998 555668999999999999 78889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 397 VKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 397 ~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
.++|..|+|+++|++... +++-..+++.|+|++|.++|.-.+.++...+..+|.+|-+.+
T Consensus 378 f~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 378 FDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred hHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999864 555667999999999999998889999999999999887644
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=265.45 Aligned_cols=281 Identities=20% Similarity=0.246 Sum_probs=256.4
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHH
Q 012413 177 PTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKT 254 (464)
Q Consensus 177 ~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~ 254 (464)
+.|+.+|++|. ..++.++..|+|+|.+++.++.+.-+.+++.|++|.++.+|.+++.++++.|+|+|+|++.+ +..|.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 58888999997 56699999999999999999999999999999999999999999999999999999999996 68899
Q ss_pred HHHhcCcHHHHHHHHccCCH-HHHHHHHHHHHHhcccccchhhh-hccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 255 LITNAGAIKSLVYVLKTGTE-TSKQNAACALMSLALIEENKSSI-GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~~Ls~~~~~~~~i-~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
.+.+.|++++|+.++...+. ....++.|+|.|||.+..-...+ .-..++|.|..++.+.|+++...|+|+|..|+.++
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998876 78899999999999885322222 22567999999999999999999999999999854
Q ss_pred -chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 012413 333 -QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIE-DGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 333 -~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~ 409 (464)
+.-+.+++.|++|.|+.+|......++..|+.+++|++ +++...+.++..|+++.|..++. +....++..|+|+|.|
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN 348 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN 348 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 66677789999999999999999999999999999999 67778888999999999999999 6677799999999999
Q ss_pred HhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 410 LCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 410 L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
++.++.++.+++.++|.+|.|+.+|++++-++|+.|+||+.+++..+.
T Consensus 349 ItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 349 ITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred hhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999999999999999999999999986554
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=239.07 Aligned_cols=276 Identities=24% Similarity=0.302 Sum_probs=257.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLIT 257 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~ 257 (464)
.+..|+..+..+..++|..++.++.+++.- +.++..+...|++.+|..+-++.+..+|.++..+|.|+....++|+.++
T Consensus 127 Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV 205 (550)
T KOG4224|consen 127 GLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLV 205 (550)
T ss_pred ChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhh
Confidence 455566677788889999999999999988 8888999999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccC--ChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH
Q 012413 258 NAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACG--AIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 258 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g--~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
.+|++|.|+.++++++.++|++++.++.+++.+..+|..+.+.+ .+|.|++++.++++.++-.|..+|+||+...+.+
T Consensus 206 ~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 206 HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh
Confidence 99999999999999999999999999999999999999999877 9999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcC
Q 012413 336 ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDG-SVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 336 ~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~L~~~~ 414 (464)
..++++|++|.++++|+++..........|+.|++-++-+..-|+++|.+.+|+.+|.-+ ++++|-.|..+|++|+...
T Consensus 286 ~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS 365 (550)
T ss_pred hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence 999999999999999999988888889999999999999999999999999999999965 5669999999999999989
Q ss_pred HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 415 ~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
+.++..+.+.|+|+.|++++.++...+|..-..++..|+=
T Consensus 366 e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 366 EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 9999999999999999999999988888877766666653
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=234.58 Aligned_cols=311 Identities=24% Similarity=0.288 Sum_probs=276.8
Q ss_pred HhhhhhcccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCCchHHHHHHH
Q 012413 104 SQAFSDFSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICI 183 (464)
Q Consensus 104 ~~ll~~~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~~~v~~Lv 183 (464)
.|...|...+|.++++.+-.+++..+....+.. .+.+..+.
T Consensus 133 ~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~---------------------------------------sGaL~plt 173 (550)
T KOG4224|consen 133 LQMMTDGVEVQCNAVGCITNLATFDSNKVKIAR---------------------------------------SGALEPLT 173 (550)
T ss_pred HHhcCCCcEEEeeehhhhhhhhccccchhhhhh---------------------------------------ccchhhhH
Confidence 445556666777888888777666444333321 23444556
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcC--c
Q 012413 184 DGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAG--A 261 (464)
Q Consensus 184 ~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g--~ 261 (464)
++-++.+..+|+.+..+|.+++.. .++|+.++..|++|.|+.++++.++++|..++.++++++-+...|+.+++.| .
T Consensus 174 rLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~l 252 (550)
T KOG4224|consen 174 RLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKL 252 (550)
T ss_pred hhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccch
Confidence 666788899999999999999876 8889999999999999999999999999999999999999999999999888 9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHc
Q 012413 262 IKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSA 341 (464)
Q Consensus 262 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~ 341 (464)
||.|+.++.++++.++.+|..+|.+|+.+.+.+..|+++|++|.++++|+++..........++.|++.++-|-..++++
T Consensus 253 v~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~da 332 (550)
T KOG4224|consen 253 VPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADA 332 (550)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecc
Confidence 99999999999999999999999999999999999999999999999999998888888899999999999999999999
Q ss_pred CCHHHHHHhhcCCC-HHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHH
Q 012413 342 GAVRPLVGMLAGQG-EGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRG 419 (464)
Q Consensus 342 g~v~~Lv~lL~~~~-~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~ 419 (464)
|.+.+||.+|+..+ ++++-+|...|+||+. ...++..|.+.|+|+.|.+++.+....+|...-.|+..|+-. +..+.
T Consensus 333 gfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~-d~~k~ 411 (550)
T KOG4224|consen 333 GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN-DNDKE 411 (550)
T ss_pred cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc-cccHH
Confidence 99999999998665 5589999999999996 677899999999999999999999999999999999999854 56788
Q ss_pred HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 420 LLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 420 ~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.+.+.|.++.|+.+..+.+.+++.+|+.||.+++..
T Consensus 412 ~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 412 ALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 899999999999999999999999999999999864
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=231.40 Aligned_cols=356 Identities=19% Similarity=0.180 Sum_probs=285.5
Q ss_pred cccCCcchhHHH---HHHh-hhhhcccchhhhHHHHHHhhcC--CCchhhhhcCcccCcccccCCCchhhhhhhcccC-c
Q 012413 90 SVKSTISEDDYL---NVSQ-AFSDFSVCSSDISGELQRLASL--PSPENILRQPNENNCQAELEPEPEPCLGFLQREN-F 162 (464)
Q Consensus 90 ~~~~~~~e~~~~---~L~~-ll~~~~~~r~~a~~~l~~la~~--~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~-~ 162 (464)
|.+-||.+.... .|.+ +|+|+-.-+-.++-.++++.+. ..++..++.+| .+|-+ |+|+.... +
T Consensus 60 ss~i~meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaG-------vVpRf---vefm~~~q~~ 129 (526)
T COG5064 60 SSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAG-------VVPRF---VEFMDEIQRD 129 (526)
T ss_pred hccCchhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhcc-------ccHHH---HHHHHhcchh
Confidence 344456555433 3433 4444322233455556665554 34666777666 77777 77774322 1
Q ss_pred hhh-----HhhhcCCCCc--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc
Q 012413 163 STE-----IIESISPEDL--------QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK 229 (464)
Q Consensus 163 s~~-----i~~~~~~~~~--------~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~ 229 (464)
-.+ .+-.+..+.. .++|+.++++|.+++.+|++.++|+|++++.+++.+|..+.++|++++|+.+|.
T Consensus 130 mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ 209 (526)
T COG5064 130 MLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL 209 (526)
T ss_pred HHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH
Confidence 111 1111111110 368999999999999999999999999999999999999999999999999998
Q ss_pred CCCH--HHHHHHHHHHHHhcCC--C-chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCCh
Q 012413 230 CSDP--WTQEHSVTALLNLSLH--E-NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAI 303 (464)
Q Consensus 230 ~~~~--~v~~~A~~aL~~La~~--~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i 303 (464)
+..+ .+.+++.|.|.||+.. | ..-..+ ..++|.|.+++.+.|+++..-|||++.+|+..+ +.-+.+.+.|..
T Consensus 210 ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~ 287 (526)
T COG5064 210 SSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIP 287 (526)
T ss_pred hccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCc
Confidence 8554 7899999999999984 3 222333 237999999999999999999999999999886 566788899999
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHhcCcchH-HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHh
Q 012413 304 PPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVE 381 (464)
Q Consensus 304 ~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~-~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~ 381 (464)
+.|+++|.+++..++.-|++.++|+....+.+ +.++..|+++.+..+|.++...++.+|||.+.|++ ++.+..+++++
T Consensus 288 ~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid 367 (526)
T COG5064 288 GRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVID 367 (526)
T ss_pred HHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHh
Confidence 99999999999999999999999999966544 55678999999999999999999999999999998 78899999999
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc---CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE---SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
.+.+|+|+++|...+-.++..|+|++.|...+ .|+.-..+++.|.|.+|.++|.-.+..+-+.+..++.++-+-+.
T Consensus 368 ~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge 446 (526)
T COG5064 368 ANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGE 446 (526)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence 99999999999999999999999999999876 46667788999999999999998888888888888888876543
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=226.80 Aligned_cols=279 Identities=19% Similarity=0.221 Sum_probs=249.2
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHH
Q 012413 177 PTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKT 254 (464)
Q Consensus 177 ~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~ 254 (464)
+.|+.+++.+. ....-.+..|+|+|.+++.+.......++++|+||.++++|.+.+.++++.+.|+|+|++.+ +..|.
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 57888899994 45566788999999999999777777888999999999999999999999999999999996 58889
Q ss_pred HHHhcCcHHHHHHHHccCC--HHHHHHHHHHHHHhccccc---chhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHh
Q 012413 255 LITNAGAIKSLVYVLKTGT--ETSKQNAACALMSLALIEE---NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLC 329 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~--~~v~~~a~~aL~~Ls~~~~---~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~ 329 (464)
.+...|++.+|+.+|.+.- ..+..++.|+|.||+.... .-..+ ..++|.|.+|+.+.++++.-.|+|++..|+
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 9999999999999998764 4788999999999997621 11111 236899999999999999999999999999
Q ss_pred cCc-chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 012413 330 SLK-QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTL 407 (464)
Q Consensus 330 ~~~-~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 407 (464)
..+ +..+.+++.|..+.|+++|.+++..++..|+..++|+. +++...+.+++.|+++.+..+|.++...+|..|+|++
T Consensus 272 Dg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTi 351 (526)
T COG5064 272 DGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI 351 (526)
T ss_pred cCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheee
Confidence 965 66777889999999999999999999999999999999 6666777889999999999999999999999999999
Q ss_pred HHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 408 LQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 408 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
.|++..+.++.+.+.+++.+|+|+.+|.+-+-.+++.|+||+.+....+-
T Consensus 352 SNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 352 SNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred cccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999876543
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-19 Score=191.06 Aligned_cols=282 Identities=19% Similarity=0.204 Sum_probs=239.5
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
.+.|+.|+++|++.+.++...++..|..|+.. .+++..+.+.|+|++|+.++.+++.+++..++.+|.||+.+++.|..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 46788889999999999999999999999998 67899999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcch
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
+++.|.+|.|+.+|.+++ .+..++.+|.+||.++++|..+...+++|.+++++.. ++..+...++.++.||+.++.+
T Consensus 368 mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn 445 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN 445 (708)
T ss_pred HHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence 999999999999998654 5567999999999999999999999999999998766 4667777888888888888888
Q ss_pred HHHHHHcCCHHHHHHhhc-------------------------------------C-CCHHHHHHHHHHHHHHh------
Q 012413 335 KERAVSAGAVRPLVGMLA-------------------------------------G-QGEGMAEKAMVVLSLLA------ 370 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~-------------------------------------~-~~~~v~~~A~~aL~nLa------ 370 (464)
.+.+.+.|+++.|+.... . ++.+...+++++|+||.
T Consensus 446 aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~ 525 (708)
T PF05804_consen 446 AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDW 525 (708)
T ss_pred HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCH
Confidence 888777777776655321 1 12334555666677664
Q ss_pred --------------------------------------CCHhhHHHHHhcCcHHHHHHHHhc--CCHHHHHHHHHHHHHH
Q 012413 371 --------------------------------------GIAEGREAIVEENGIAALVEAIED--GSVKGKEFAVLTLLQL 410 (464)
Q Consensus 371 --------------------------------------~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L 410 (464)
..+..+..+.+.|.++.|+++++. +++++....+++++++
T Consensus 526 ~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~l 605 (708)
T PF05804_consen 526 AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQL 605 (708)
T ss_pred HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 233567777789999999999985 5789999999999999
Q ss_pred hhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCCC
Q 012413 411 CAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGP 460 (464)
Q Consensus 411 ~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~~ 460 (464)
..+.+.....+.+.+++..|++++++.++.+|+.|-.+|--++++..+|.
T Consensus 606 l~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 606 LFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred HcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 99866555555668999999999999999999999999999999877653
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=166.48 Aligned_cols=273 Identities=18% Similarity=0.212 Sum_probs=239.8
Q ss_pred HHHHhc--CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchH----
Q 012413 181 ICIDGL--QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNK---- 253 (464)
Q Consensus 181 ~Lv~~L--~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~---- 253 (464)
.+++.| +.++.++-...++++..-+..++.+|+.+++.++.+.+.+.|.+ ...++.+.+++++..|..+++.|
T Consensus 149 vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg 228 (461)
T KOG4199|consen 149 VVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFG 228 (461)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecc
Confidence 334554 45778899999999988888889999999999999999977665 45579999999999998877654
Q ss_pred ------HHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC-Chh---hHHHHH
Q 012413 254 ------TLITNAGAIKSLVYVLKTG-TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG-SSR---GKKDAL 322 (464)
Q Consensus 254 ------~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~-~~~---v~~~A~ 322 (464)
..|+..|++..|++.|+.. ++.+....+.+|..|+...+.+..|.+.|++..|+.++.+. ... ..+.++
T Consensus 229 ~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~l 308 (461)
T KOG4199|consen 229 QAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCL 308 (461)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHH
Confidence 4566788899999999875 78999999999999999999999999999999999999984 333 457889
Q ss_pred HHHHHHhcCcchHHHHHHcCCHHHHHHhhc--CCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcC--CH
Q 012413 323 TTLYKLCSLKQNKERAVSAGAVRPLVGMLA--GQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDG--SV 397 (464)
Q Consensus 323 ~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~--~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~--~~ 397 (464)
..|..|+.++.++..+++.|+.+.++.++. ..++.+.+.++.++.-|+ ..+++...+++.|+-...++.|+.. ..
T Consensus 309 slLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a 388 (461)
T KOG4199|consen 309 SLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAA 388 (461)
T ss_pred HHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHH
Confidence 999999999999999999999999999984 557889999999999999 7899999999999999999999954 57
Q ss_pred HHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 398 KGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 398 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.+|.+|++.+.||..++..++..+...| ++.|+...+..++.++..|+.||+.|.=
T Consensus 389 ~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 389 QVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 8999999999999999988888877766 9999999999999999999999998863
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-18 Score=183.17 Aligned_cols=257 Identities=23% Similarity=0.222 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT 271 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~ 271 (464)
.+...|+..|.|++.+ +.....+.+.|+|+.|+++|++++.++...++.+|.+|+...+++..+.+.|+|+.|++++.+
T Consensus 264 qLlrv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence 3444778889999998 677788889999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhh
Q 012413 272 GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGML 351 (464)
Q Consensus 272 ~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL 351 (464)
++.+++..++++|.|||.+++.|..++..|.+|.|+.+|.++ ..+..++.+|++|+..++++..+...+++|.++.++
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~L 420 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQML 420 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999864 456679999999999999999999999999999986
Q ss_pred cC-CCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHH
Q 012413 352 AG-QGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPL 430 (464)
Q Consensus 352 ~~-~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 430 (464)
-. +++.+...++..+.||+.++.+.+.+.+.|+++.|++......+. .....+.|++.+++..+..+. +.+..|
T Consensus 421 l~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L 495 (708)
T PF05804_consen 421 LENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV--DFIGDL 495 (708)
T ss_pred HhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--HHHHHH
Confidence 54 556677788999999999999999999989999999988764432 344699999998866666665 478899
Q ss_pred HHhhhcC-CHHHHHHHHHHHHHhhcCC
Q 012413 431 VALSQTG-SVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 431 v~lL~s~-~~~v~~~A~~aL~~L~~~~ 456 (464)
++++..+ +++..-.+.++|.+|.-.+
T Consensus 496 ~~~v~~~~~ee~~vE~LGiLaNL~~~~ 522 (708)
T PF05804_consen 496 AKIVSSGDSEEFVVECLGILANLTIPD 522 (708)
T ss_pred HHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence 9998775 5688889999999987543
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=190.22 Aligned_cols=266 Identities=23% Similarity=0.246 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCC------------CHHHHHHHHHHHHHhcCC-CchHHHHHh-c
Q 012413 194 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS------------DPWTQEHSVTALLNLSLH-ENNKTLITN-A 259 (464)
Q Consensus 194 r~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~------------~~~v~~~A~~aL~~La~~-~~~~~~i~~-~ 259 (464)
...|+.+|-.++.+ ++.|..+-+.|++..+-.||.-+ .-.+|+.|..+|.||... ..+|..++. .
T Consensus 315 lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r 393 (2195)
T KOG2122|consen 315 LCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR 393 (2195)
T ss_pred hHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence 34677777888887 89999999999999999887532 246899999999999996 578888775 8
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhcccc--cchhhhhccCChHHHHHHh-hcCChhhHHHHHHHHHHHhc-CcchH
Q 012413 260 GAIKSLVYVLKTGTETSKQNAACALMSLALIE--ENKSSIGACGAIPPLVSLL-IYGSSRGKKDALTTLYKLCS-LKQNK 335 (464)
Q Consensus 260 g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~Li~lL-~~~~~~v~~~A~~aL~nL~~-~~~~~ 335 (464)
|.+..+|.-|.+..+++....+.+|.||++.. ..+..+.+.|-+..|+.+- ........+..+.+||||+. ..+|+
T Consensus 394 gfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK 473 (2195)
T KOG2122|consen 394 GFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK 473 (2195)
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence 99999999999999999999999999999983 3467777899999998875 44567889999999999999 56899
Q ss_pred HHHHH-cCCHHHHHHhhcCCC----HHHHHHHHHHHHHHhC----CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHH
Q 012413 336 ERAVS-AGAVRPLVGMLAGQG----EGMAEKAMVVLSLLAG----IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLT 406 (464)
Q Consensus 336 ~~iv~-~g~v~~Lv~lL~~~~----~~v~~~A~~aL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 406 (464)
..|-+ .|++..||.+|..+. ..+.+.|.++|.|+.. .+.+|+.+.+..++..|+++|++.+-.+..+++++
T Consensus 474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGT 553 (2195)
T KOG2122|consen 474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGT 553 (2195)
T ss_pred hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhh
Confidence 99976 889999999997653 4678899999999864 57889999999999999999999999999999999
Q ss_pred HHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCCC
Q 012413 407 LLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGP 460 (464)
Q Consensus 407 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~~ 460 (464)
||||...+++.++.+|+.|+++.|.+++++.+..+-+.++.+|+||..+|+-..
T Consensus 554 LWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAkq 607 (2195)
T KOG2122|consen 554 LWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAKQ 607 (2195)
T ss_pred hhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchhh
Confidence 999999999999999999999999999999999999999999999999985433
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=146.76 Aligned_cols=270 Identities=16% Similarity=0.198 Sum_probs=231.7
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcC-CCchHHHHHhcCc
Q 012413 185 GLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSL-HENNKTLITNAGA 261 (464)
Q Consensus 185 ~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~ 261 (464)
+-.+++..+...++.+|..+....|.. .+..+...++.+|.. ++.++.......+..-+. |+.+|+.+++.++
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~i 190 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKI 190 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence 345678888899999999998886654 467888999998865 677787777777777665 7899999999999
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHhcccccc----------hhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHh
Q 012413 262 IKSLVYVLKT-GTETSKQNAACALMSLALIEEN----------KSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLC 329 (464)
Q Consensus 262 i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~----------~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~ 329 (464)
.+.+...|.. +...+....+|+++.|..+++. ...|...|+...|++.+.-. ++.+...++.+|..|+
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 9999976655 4456889999999999876554 45667778899999999886 8999999999999999
Q ss_pred cCcchHHHHHHcCCHHHHHHhhcCCC-H---HHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHh--cCCHHHHHHH
Q 012413 330 SLKQNKERAVSAGAVRPLVGMLAGQG-E---GMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIE--DGSVKGKEFA 403 (464)
Q Consensus 330 ~~~~~~~~iv~~g~v~~Lv~lL~~~~-~---~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A 403 (464)
..++.+..+.+.||+..|+.++.+.+ . .....++..|..|++++..+..|++.||.+.++.++. ..++.+.+.+
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999998754 2 3457788999999999999999999999999999987 4689999999
Q ss_pred HHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHHhhcCCCC
Q 012413 404 VLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG--SVRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 404 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~~L~~~~~~ 458 (464)
+.++.-||-..|++...+++.|+-...+..++.. ...++++|+|+++++.-..++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~ 407 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE 407 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999875 359999999999999876554
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-17 Score=170.85 Aligned_cols=280 Identities=21% Similarity=0.238 Sum_probs=229.3
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC---Cch
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH---ENN 252 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~---~~~ 252 (464)
.+.++.-+.+|.+.++.++..|+..|..++..+.+.+..+.+.|+|+.|+.+|++...+++..||++|-||... .++
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 46777778999999999999999999999999999999999999999999999999999999999999999884 258
Q ss_pred HHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC--------------Chhh
Q 012413 253 KTLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG--------------SSRG 317 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~--------------~~~v 317 (464)
+-.|.+.++|+.++.+|+. .|.++++.+..+|+||+.++..|..++... +..|...+-.+ +..+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHhhcccccccCCCCccccccccee
Confidence 8899999999999999987 799999999999999999977777665543 55555544321 2567
Q ss_pred HHHHHHHHHHHhc-CcchHHHHHH-cCCHHHHHHhhc------CCCHHHHHHHHHHHHHHhCCHh---------------
Q 012413 318 KKDALTTLYKLCS-LKQNKERAVS-AGAVRPLVGMLA------GQGEGMAEKAMVVLSLLAGIAE--------------- 374 (464)
Q Consensus 318 ~~~A~~aL~nL~~-~~~~~~~iv~-~g~v~~Lv~lL~------~~~~~v~~~A~~aL~nLa~~~~--------------- 374 (464)
..+++++|.|++. ..+.+++|.+ .|.|..|+..++ ..+....++++.+|.||...-+
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 8899999999999 7789999987 889999999886 3456679999999999973110
Q ss_pred -----------------hHHH----------------------HHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcC
Q 012413 375 -----------------GREA----------------------IVEENGIAALVEAIE-DGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 375 -----------------~~~~----------------------i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~ 414 (464)
-... +....+|..-+.+|. +.++.+.+.++.+|-||+...
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~ 550 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL 550 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence 0001 111224555455565 467889999999999999864
Q ss_pred H----HhHH-HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 415 V----KNRG-LLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 415 ~----~~~~-~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
. ..+. .+..+.++++|+++|+.++++|...++.+|++++.+.
T Consensus 551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 2 2333 3478899999999999999999999999999998754
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-16 Score=153.66 Aligned_cols=256 Identities=16% Similarity=0.086 Sum_probs=203.8
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCC
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~ 174 (464)
..-.+++|..+|.| +..+|..++.+|+.+ +
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~-------------~------------------------------------ 51 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLR-------------G------------------------------------ 51 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhc-------------C------------------------------------
Confidence 34456778888887 788888888888765 1
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHhcCCCchH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPL-LKCSDPWTQEHSVTALLNLSLHENNK 253 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~l-L~~~~~~v~~~A~~aL~~La~~~~~~ 253 (464)
-..+++.+..+++++++.+|..|+++|+.+...... ...+++.|..+ ++++++.|+..|+.+|+++.......
T Consensus 52 ~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~ 125 (280)
T PRK09687 52 GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY 125 (280)
T ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc
Confidence 023455556778899999999999999988653211 12467888877 67799999999999999996532211
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
...+++.+...+.+++..+|..++++|..+ .+..+++.|+.+|.++++.+|..|+.+|+.+....+
T Consensus 126 ----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 126 ----SPKIVEQSQITAFDKSTNVRFAVAFALSVI----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred ----chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 122566788888999999999999999875 345579999999999999999999999999833222
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
.+++.|+.+|.+.+..|+..|+++|+.+.. ..+++.|++.+.+++ ++..|+.+|++++..
T Consensus 192 --------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 192 --------DIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK 251 (280)
T ss_pred --------HHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH
Confidence 377889999999999999999999997654 468999999999866 677899999999852
Q ss_pred CHHhHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHH
Q 012413 414 SVKNRGLLVREGGIPPLVALSQ-TGSVRAKHKAETLLGY 451 (464)
Q Consensus 414 ~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~~ 451 (464)
.+++.|..++. .++++++.+|.++|..
T Consensus 252 -----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -----------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred -----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 37899999997 7799999999999875
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-15 Score=142.86 Aligned_cols=227 Identities=19% Similarity=0.205 Sum_probs=192.3
Q ss_pred HHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc
Q 012413 215 IGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN 293 (464)
Q Consensus 215 i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~ 293 (464)
+.+.+-++.|+.+|+. .+|.+++.|..++++.+..+.++..+.+.|+++.+..+|.++++.++..|+++|.|++...++
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 3567888999999996 799999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhccCChHHHHHHhhcC--ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 294 KSSIGACGAIPPLVSLLIYG--SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 294 ~~~i~~~g~i~~Li~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
+..+.. .++.+.+...+. +..++..++++|.||+..++.+..+.. .++.++.+|..++..++.+++.+|.||+.
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 887743 578877766554 789999999999999988877777654 79999999999999999999999999999
Q ss_pred CHhhHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCH-H-------------hHHHHHHcC-ChHHHHHhhh
Q 012413 372 IAEGREAIVEENGIAALVEAIEDG-SVKGKEFAVLTLLQLCAESV-K-------------NRGLLVREG-GIPPLVALSQ 435 (464)
Q Consensus 372 ~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~L~~~~~-~-------------~~~~i~~~g-~i~~Lv~lL~ 435 (464)
++.....++.+.+...++.++... +.++...++..+.||..+-. + .-..+.+.+ ..+.|..+..
T Consensus 164 np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~ 243 (254)
T PF04826_consen 164 NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALAN 243 (254)
T ss_pred CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHc
Confidence 999999999999999999999864 78889999999999965311 1 012233333 5566777777
Q ss_pred cCCHHHHHHH
Q 012413 436 TGSVRAKHKA 445 (464)
Q Consensus 436 s~~~~v~~~A 445 (464)
+++++||.+.
T Consensus 244 h~d~ev~~~v 253 (254)
T PF04826_consen 244 HPDPEVKEQV 253 (254)
T ss_pred CCCHHHhhhc
Confidence 7777887753
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-14 Score=151.24 Aligned_cols=282 Identities=17% Similarity=0.175 Sum_probs=228.9
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
....+.+..+|.++++.||..+++.|+++..++....+.+.+.+.++.++.+|.+++..+...|+.+|.+++.++...+.
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 45677788999999999999999999999999888788888999999999999999999999999999999999888888
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
+.+.+.++.|..++...+..+|..+..++.+++.. ++....+.+.|.++.+++.|.++|.-++.+++.+|..|+..+.+
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG 235 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence 88989999999999998999999999999999987 56777888899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHH------HHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 012413 335 KERAVSAGAVRPLVGMLAGQGEGM------AEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLL 408 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~~~v------~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 408 (464)
.+.+.+.|+++.|+.++.+...+. .-..+...++++...+..-.-.-...+..|.+++.+.+...+..|..+++
T Consensus 236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg 315 (503)
T PF10508_consen 236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLG 315 (503)
T ss_pred HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 999999999999999996543222 22334566667753111111111335556667777889999999999999
Q ss_pred HHhhcCHHhHHHH-HHc-CC----hHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCC
Q 012413 409 QLCAESVKNRGLL-VRE-GG----IPPLVALSQTGSVRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 409 ~L~~~~~~~~~~i-~~~-g~----i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~ 458 (464)
.|+.. .+.+..+ ... +. +...-....++..++|.++..+|..+-..+..
T Consensus 316 ~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 316 QIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD 370 (503)
T ss_pred HHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC
Confidence 99954 4555555 332 33 44444444556779999999999999654443
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-15 Score=144.03 Aligned_cols=229 Identities=12% Similarity=0.038 Sum_probs=186.2
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
...++.|+..|.+.+..+|..|+++|..+. +..+++.+..+++++++.+|..|+++|+.|......
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 346777889999999999999999996554 346788899999999999999999999998753322
Q ss_pred HHhcCcHHHHHHH-HccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 256 ITNAGAIKSLVYV-LKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 256 i~~~g~i~~Lv~l-L~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
...+++.|..+ ++++++.||..|+.+|+++...... ....+++.+..++.+++..||..++.+|+.+.
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----- 156 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----- 156 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----
Confidence 22467888877 6788999999999999998543211 12234667778888999999999999998753
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 335 KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
...+++.|+.+|.+++..++..|+.+|+.+.... ..+++.|+..+.+.+..+|..|+++|+.+..
T Consensus 157 -----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-- 221 (280)
T PRK09687 157 -----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-- 221 (280)
T ss_pred -----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC--
Confidence 2338899999999999999999999999984211 2578889999999999999999999999764
Q ss_pred HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 415 ~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
..+++.|++.+++++ ++..|+.+|+.+...
T Consensus 222 ---------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 222 ---------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK 251 (280)
T ss_pred ---------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH
Confidence 247999999999876 678899999998763
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-13 Score=141.84 Aligned_cols=322 Identities=17% Similarity=0.154 Sum_probs=246.8
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCC
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~ 174 (464)
..+..+.|...|.+ ++.||..+..++++++..++...... ..
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~-----------------------------------~~-- 117 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLL-----------------------------------VD-- 117 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHh-----------------------------------cC--
Confidence 56777788888888 88888888888888765543321111 11
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNK 253 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~ 253 (464)
...++.++.+|.+++..|...|+.+|..++.+.+.. +.+.+.+.+..|..++...+..+|..+..++.+++.. ++..
T Consensus 118 -~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 118 -NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred -ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 246667789999999999999999999999985544 5577888899999999988889999999999999875 6788
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC--Ch---h-hHHHHHHHHHH
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG--SS---R-GKKDALTTLYK 327 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~--~~---~-v~~~A~~aL~n 327 (464)
..+.+.|.++.++..|+++|.-++.+++..|..|+..+.+...+.+.|+++.|.+++.+. ++ . ..-......++
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 888889999999999999999999999999999999989999999999999999999864 33 1 11233466777
Q ss_pred HhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHH-HhcC-----cHHHHHHHHhcCCHHHHH
Q 012413 328 LCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAI-VEEN-----GIAALVEAIEDGSVKGKE 401 (464)
Q Consensus 328 L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i-~~~g-----~i~~Lv~lL~~~~~~v~~ 401 (464)
++...+..-.-.-...+..|..++.+.+...+.-|+.+++.|+...+++..+ ...| ++..+-....+...++|.
T Consensus 276 la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~ 355 (503)
T PF10508_consen 276 LARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKL 355 (503)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHH
Confidence 7774221111111224456677778888999999999999999999999999 5443 355555555567889999
Q ss_pred HHHHHHHHHhhcCHH---h------HHHHH--HcCChH-HHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 402 FAVLTLLQLCAESVK---N------RGLLV--REGGIP-PLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 402 ~A~~aL~~L~~~~~~---~------~~~i~--~~g~i~-~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
.++.+|.++....+. . +..+. ..+-.. .++.+++.+=+++|..+-..|..++.++
T Consensus 356 r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 356 RALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 999999999433221 1 11111 234444 7788888888999999999999998875
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.6e-14 Score=134.96 Aligned_cols=222 Identities=19% Similarity=0.179 Sum_probs=184.7
Q ss_pred hHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 176 QPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
...++.|+..|+. .+|.+++.++.++.+.+.. +.++..+.+.|+++.+..+|.++++.++..|+++|.|++.+.+++.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 4577888999984 6899999999999998877 7899999999999999999999999999999999999999998888
Q ss_pred HHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 255 LITNAGAIKSLVYVLKTG--TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
.+-. .++.+++.+.+. +..++..++.+|.+|+...+.+..+. +.++.++.+|..++..++..++++|.||+.++
T Consensus 90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 7754 688888766554 78999999999999998877776664 47999999999999999999999999999999
Q ss_pred chHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhCCH--h-------------hHHHHHhcC-cHHHHHHHHhcC
Q 012413 333 QNKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLAGIA--E-------------GREAIVEEN-GIAALVEAIEDG 395 (464)
Q Consensus 333 ~~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~--~-------------~~~~i~~~g-~i~~Lv~lL~~~ 395 (464)
.....++.++++..++.++... ..++...++....||..+- + ....+.+.+ ..+.|..+..++
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~ 245 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHP 245 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCC
Confidence 9999999999999999999876 5778999999999996321 1 111222222 455666666667
Q ss_pred CHHHHHH
Q 012413 396 SVKGKEF 402 (464)
Q Consensus 396 ~~~v~~~ 402 (464)
+++||..
T Consensus 246 d~ev~~~ 252 (254)
T PF04826_consen 246 DPEVKEQ 252 (254)
T ss_pred CHHHhhh
Confidence 7777654
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-13 Score=145.04 Aligned_cols=278 Identities=24% Similarity=0.255 Sum_probs=218.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCch--hHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCch
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSD--NRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENN 252 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~--~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~ 252 (464)
.+.|+.||.+|.+.+.+|+..|+.+|+||...+.. ++-.+.+.++|+.++.+|+. .|.++++....+|.||+.++..
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l 353 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL 353 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH
Confidence 46788889999999999999999999999988776 88899999999999999997 7778888777777777655333
Q ss_pred H-------------------------------------------------------HHHHh-cCcHHHHHHHHcc-----
Q 012413 253 K-------------------------------------------------------TLITN-AGAIKSLVYVLKT----- 271 (464)
Q Consensus 253 ~-------------------------------------------------------~~i~~-~g~i~~Lv~lL~~----- 271 (464)
+ +.+.+ .|.|..|+..++.
T Consensus 354 K~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 354 KMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 3 23333 5667888777763
Q ss_pred -CCHHHHHHHHHHHHHhccccc------c--------------------------hhh-h--------------------
Q 012413 272 -GTETSKQNAACALMSLALIEE------N--------------------------KSS-I-------------------- 297 (464)
Q Consensus 272 -~~~~v~~~a~~aL~~Ls~~~~------~--------------------------~~~-i-------------------- 297 (464)
.+....+++...|.||+..-+ . +.. .
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence 366778899999999985311 0 000 0
Q ss_pred -hccCChHHHHHHhh-cCChhhHHHHHHHHHHHhcCc-----chHHHH-HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 012413 298 -GACGAIPPLVSLLI-YGSSRGKKDALTTLYKLCSLK-----QNKERA-VSAGAVRPLVGMLAGQGEGMAEKAMVVLSLL 369 (464)
Q Consensus 298 -~~~g~i~~Li~lL~-~~~~~v~~~A~~aL~nL~~~~-----~~~~~i-v~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nL 369 (464)
...-+|..-+.+|. +.+..+.++++++|-||+... ..+..+ ..+.+.+.|+++|..++..+...++.+|.||
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 00012222233343 347789999999999998843 234444 6788999999999999999999999999999
Q ss_pred hCCHhhHHHHHhcCcHHHHHHHHhcC------CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC-CHHHH
Q 012413 370 AGIAEGREAIVEENGIAALVEAIEDG------SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG-SVRAK 442 (464)
Q Consensus 370 a~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~ 442 (464)
+.+..++..|. .++++.|++.|... +++....++.+|+++...+..+...+.+.++++.|+.+.++. ++.+-
T Consensus 594 s~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~ 672 (717)
T KOG1048|consen 594 SRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEF 672 (717)
T ss_pred ccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHH
Confidence 99999998888 78999999999853 478889999999999999999999999999999999999986 45788
Q ss_pred HHHHHHHHHhhc
Q 012413 443 HKAETLLGYLRE 454 (464)
Q Consensus 443 ~~A~~aL~~L~~ 454 (464)
+.|...|..|=.
T Consensus 673 kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 673 KAASSVLDVLWQ 684 (717)
T ss_pred HHHHHHHHHHHH
Confidence 877777665543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.9e-14 Score=157.29 Aligned_cols=272 Identities=17% Similarity=0.148 Sum_probs=206.8
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCC--
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISP-- 172 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~-- 172 (464)
++..++.|.+.|+| ++.||+.|++.|+++.. ++ .+|.| +..|.+.+ .+++.....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~----------------~~~~L---~~aL~D~d--~~VR~~Aa~aL 676 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-PG----------------FGPAL---VAALGDGA--AAVRRAAAEGL 676 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-hh----------------HHHHH---HHHHcCCC--HHHHHHHHHHH
Confidence 45577899999988 99999999999998720 00 22222 45554433 222221111
Q ss_pred ---CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 012413 173 ---EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH 249 (464)
Q Consensus 173 ---~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~ 249 (464)
....+..+.|...|+++++.||..|+.+|..+.. +....|+..|+++++.+|..|+.+|..+.
T Consensus 677 ~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-- 742 (897)
T PRK13800 677 RELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALGDPDHRVRIEAVRALVSVD-- 742 (897)
T ss_pred HHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhcCCCHHHHHHHHHHHhccc--
Confidence 0011233566788889999999999999977642 23456788999999999999999998752
Q ss_pred CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHh
Q 012413 250 ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLC 329 (464)
Q Consensus 250 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~ 329 (464)
..+.|..++.+++..+|..++.+|..+... +...++.|..++.++++.+|..|+.+|+++.
T Consensus 743 -----------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 743 -----------DVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred -----------CcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 245678899999999999999999997432 2234789999999999999999999999874
Q ss_pred cCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012413 330 SLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 330 ~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 409 (464)
..+. .++.++..|.+++..++..|+.+|+.+.. ...++.|+.+|.+++..||..|+++|+.
T Consensus 804 ~~~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 804 CPPD---------DVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred Ccch---------hHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 4321 34668889999999999999999997764 4567999999999999999999999999
Q ss_pred HhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 012413 410 LCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGY 451 (464)
Q Consensus 410 L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~ 451 (464)
+. .++ ...+.|..++.+++++||..|.++|..
T Consensus 865 ~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 865 WP-GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred cC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 73 122 246788899999999999999999974
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=129.39 Aligned_cols=281 Identities=13% Similarity=0.115 Sum_probs=225.3
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC----CC---HHHHHHHHHHHHHhcC
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC----SD---PWTQEHSVTALLNLSL 248 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~----~~---~~v~~~A~~aL~~La~ 248 (464)
...++.|.+...+++.++-++++++|+|++.++.++|..+.+.|+-..++..|+. ++ .+....++..|.|...
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 5688888889999999999999999999999999999999999997777777764 22 4667788888999877
Q ss_pred C-CchHHHHHhcCcHHHHHHHHccC----------------------------------------------CHHHHHHHH
Q 012413 249 H-ENNKTLITNAGAIKSLVYVLKTG----------------------------------------------TETSKQNAA 281 (464)
Q Consensus 249 ~-~~~~~~i~~~g~i~~Lv~lL~~~----------------------------------------------~~~v~~~a~ 281 (464)
+ .+.+..+.+.|+++.|...+.-+ .++......
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 5 67888999999998776555321 122333445
Q ss_pred HHHHHhcccccchhhhhccCChHHHHHHhhcC-Ch-------hhHHHHHHHHHHHhcCcchHHHHHHcC-CHHHHHHhhc
Q 012413 282 CALMSLALIEENKSSIGACGAIPPLVSLLIYG-SS-------RGKKDALTTLYKLCSLKQNKERAVSAG-AVRPLVGMLA 352 (464)
Q Consensus 282 ~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~-~~-------~v~~~A~~aL~nL~~~~~~~~~iv~~g-~v~~Lv~lL~ 352 (464)
..|...+.++..+-.+.+.|.+..++++++.- +- ...+.++....-|...++..+.+...+ .++.++..+.
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 55566666666677777888888888888762 21 123344444444555566666777666 7889999999
Q ss_pred CCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc-----CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCCh
Q 012413 353 GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED-----GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGI 427 (464)
Q Consensus 353 ~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i 427 (464)
+.+.+....+.-+++|++..+.++..+++.|.+..|+.++.. ++.++++.++.+|+|+.- ...++..+...|+.
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~aGvt 404 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAPAGVT 404 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccccchH
Confidence 999999999999999999999999999999999999999963 567889999999999985 45688899999999
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 428 PPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 428 ~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
+.++..++...|.|..+-.+.|+++.+...
T Consensus 405 eaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 405 EAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 999999999999999999999999987543
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=150.40 Aligned_cols=270 Identities=19% Similarity=0.156 Sum_probs=224.8
Q ss_pred cCCCchhhhhhhcccCchhhHhhhcCCCCchHHHHHHHHhcC---------CCCHHHHHHHHHHHHHHhccCchhHHHHH
Q 012413 146 LEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQ---------SSSVAIKRSAAAKLRLLAKNRSDNRVLIG 216 (464)
Q Consensus 146 ~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~~~v~~Lv~~L~---------s~~~~vr~~A~~~L~~La~~~~~~r~~i~ 216 (464)
..+.|.+-+-.|-...|.+|-+..+.+-+...+|..|+..-. .....+|..|..+|.||..++..++..+-
T Consensus 311 ~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 311 DEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred cchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 334443444445557788888888876555666666665432 12345899999999999999888877766
Q ss_pred h-cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC--CchHHHHHhcCcHHHHHHH-HccCCHHHHHHHHHHHHHhccc-c
Q 012413 217 E-SGAVPALVPLLKCSDPWTQEHSVTALLNLSLH--ENNKTLITNAGAIKSLVYV-LKTGTETSKQNAACALMSLALI-E 291 (464)
Q Consensus 217 ~-~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~aL~~Ls~~-~ 291 (464)
. .|++..++..|.+...++....+.+|.||++. ...++.+.+.|.+..|+.+ |+...+......+.+||||+.| .
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 4 79999999999999889999999999999996 4567778889999999875 4555667888999999999999 6
Q ss_pred cchhhhhc-cCChHHHHHHhhcC----ChhhHHHHHHHHHHHhc----CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHH
Q 012413 292 ENKSSIGA-CGAIPPLVSLLIYG----SSRGKKDALTTLYKLCS----LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKA 362 (464)
Q Consensus 292 ~~~~~i~~-~g~i~~Li~lL~~~----~~~v~~~A~~aL~nL~~----~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A 362 (464)
+||..|.+ .|++..|+.+|.-. ...+.+.+-++|.|++. ....++.+.+...+..|++.|+++.-.++.++
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa 550 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA 550 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence 99999988 89999999999754 45677888999998866 45678888899999999999999999999999
Q ss_pred HHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH
Q 012413 363 MVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV 415 (464)
Q Consensus 363 ~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~ 415 (464)
|++|+||. ..+..++.+.+.|+|+.|..++++.+..+-.-++.+|.||..+.+
T Consensus 551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 99999998 789999999999999999999999999999999999999998764
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-12 Score=142.08 Aligned_cols=229 Identities=17% Similarity=0.104 Sum_probs=153.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
.+.++.|+..|.++++.||..|+..|..+.. .++++.|+.+|+++++.+|..|+.+|..+....
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----
Confidence 4677788888888999999999888876642 357788888888888888888888887764211
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-------------cch----hhhhccCChHHHHHHhhcCChhhH
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-------------ENK----SSIGACGAIPPLVSLLIYGSSRGK 318 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-------------~~~----~~i~~~g~i~~Li~lL~~~~~~v~ 318 (464)
...+.|...|+++++.+|..++.+|..+.... ..| ..+...+..+.|..++.++++.||
T Consensus 684 ----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR 759 (897)
T PRK13800 684 ----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVR 759 (897)
T ss_pred ----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHH
Confidence 11234445555555555555555554432100 000 000001122345555555666666
Q ss_pred HHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHH
Q 012413 319 KDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVK 398 (464)
Q Consensus 319 ~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 398 (464)
..++.+|+.+.... .+.++.|..+++++++.++..|+.+|+.+... ...+..++..+.+++..
T Consensus 760 ~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~ 822 (897)
T PRK13800 760 IAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQ 822 (897)
T ss_pred HHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChH
Confidence 66666665543311 12367788888888888888888888877542 12346688888888899
Q ss_pred HHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 399 GKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 399 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
+|..|+.+|+.+... ..++.|+.+|.+++..||..|+++|..+
T Consensus 823 VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 823 VRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 999999999887642 3579999999999999999999999987
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-12 Score=108.04 Aligned_cols=118 Identities=26% Similarity=0.385 Sum_probs=111.2
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH
Q 012413 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV 415 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~ 415 (464)
.+++.|+++.|+.++.+.+..++..++++|++++.. ++....+.+.|+++.+++++.++++.++..|+++|++|+...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999999999999999999999965 8889999999999999999999999999999999999999888
Q ss_pred HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 416 KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 416 ~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.....+.+.|+++.|++++.+.+.++++.+.++|.+|++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888889999999999999999999999999999999874
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6e-11 Score=118.75 Aligned_cols=281 Identities=16% Similarity=0.190 Sum_probs=210.9
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
...|..||+.|...+.+.-......|..++-- .+++..+.+.|.|..|+.++...+++++...+..|.|++.+...+.+
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 35889999999999988888888999888877 66777788899999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHH------------------------------------------HHhcccccc
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACAL------------------------------------------MSLALIEEN 293 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL------------------------------------------~~Ls~~~~~ 293 (464)
++..|.+|.|+.+|.++... .-|...| .|||.+..+
T Consensus 382 Mv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 99999999999999875320 1111122 244444444
Q ss_pred hhhhhccCChHHHHH------------Hh-------------------------hc-CChhhHHHHHHHHHHHhcCcchH
Q 012413 294 KSSIGACGAIPPLVS------------LL-------------------------IY-GSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 294 ~~~i~~~g~i~~Li~------------lL-------------------------~~-~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
.+.+.+..++..|.+ ++ .. ++...-..++++|+||...+-.-
T Consensus 460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw 539 (791)
T KOG1222|consen 460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW 539 (791)
T ss_pred ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence 444444333333222 11 11 12223334556666666655333
Q ss_pred HHHH-HcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc--CCHHHHHHHHHHHHHH
Q 012413 336 ERAV-SAGAVRPLVGMLAGQ--GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED--GSVKGKEFAVLTLLQL 410 (464)
Q Consensus 336 ~~iv-~~g~v~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L 410 (464)
.+++ ....||.+-..|... ..+++-....+++.++........+..+|.|+.|+++|+. .+++.......+..++
T Consensus 540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~ 619 (791)
T KOG1222|consen 540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQF 619 (791)
T ss_pred HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 4443 477888888888654 3456777888888888888888888889999999999995 5777888888889999
Q ss_pred hhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCC
Q 012413 411 CAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 411 ~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~ 459 (464)
..+....+..+.+...-..|++++++.+.++|+-+--+|--++++.++|
T Consensus 620 l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EW 668 (791)
T KOG1222|consen 620 LKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEW 668 (791)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHH
Confidence 8884444445556677789999999999999999999999999988776
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-12 Score=105.65 Aligned_cols=116 Identities=25% Similarity=0.341 Sum_probs=107.7
Q ss_pred hhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-H
Q 012413 296 SIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-A 373 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~ 373 (464)
.+.+.|+++.|+++|.+.+..++..++++|++++.. ++....+++.|+++.++.+|.++++.++..++++|++|+.. +
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356889999999999999999999999999999996 78888999999999999999999999999999999999965 4
Q ss_pred hhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 374 EGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 374 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
.....+...|+++.|++++.+.+..++..|+++|++|+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 66777888999999999999999999999999999987
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-10 Score=119.49 Aligned_cols=278 Identities=13% Similarity=0.053 Sum_probs=211.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
....++..|..++..+...|+..|..+...+..........-.+..|...|++ .+.+.+..|+.+|..|...++.|..+
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f 181 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF 181 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence 34555678888999999999999988876544322211111133455666665 35788889999999999999999999
Q ss_pred HhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCc-
Q 012413 257 TNAGAIKSLVYVLKTG--TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLK- 332 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~- 332 (464)
.+.++++.|+.+|+.. +..++.+++.+++-|+..++........+.|+.|+++++.. -..+.+-++.+|.||...+
T Consensus 182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 9999999999999763 56899999999999999988777777789999999999875 6779999999999998843
Q ss_pred ------chHHHHHHcCCHHHHHHhhcC--CCHHHHHHHH-------HHHHHHhCCH------------------------
Q 012413 333 ------QNKERAVSAGAVRPLVGMLAG--QGEGMAEKAM-------VVLSLLAGIA------------------------ 373 (464)
Q Consensus 333 ------~~~~~iv~~g~v~~Lv~lL~~--~~~~v~~~A~-------~aL~nLa~~~------------------------ 373 (464)
.....+++.|..+.+-.+-.. .++++.+..- .-+..++.++
T Consensus 262 ~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 262 DREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred ccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence 234556777665544444432 2344422211 1122222211
Q ss_pred hhHHHHHhcC--cHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 012413 374 EGREAIVEEN--GIAALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLG 450 (464)
Q Consensus 374 ~~~~~i~~~g--~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 450 (464)
++...+-+.+ .+..|+++|. +.++.+..-|+.=||.++.+.|..+..+.+.|+=..+++++.+++++||..|..++.
T Consensus 342 EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 342 ENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4555565544 6899999995 567888899999999999999999999999999999999999999999999999998
Q ss_pred HhhcC
Q 012413 451 YLREP 455 (464)
Q Consensus 451 ~L~~~ 455 (464)
.|.-+
T Consensus 422 klm~~ 426 (429)
T cd00256 422 KLMVH 426 (429)
T ss_pred HHHHh
Confidence 87543
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=114.72 Aligned_cols=276 Identities=15% Similarity=0.080 Sum_probs=221.5
Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CC-------HHHHHHHHHHHHHhc
Q 012413 177 PTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SD-------PWTQEHSVTALLNLS 247 (464)
Q Consensus 177 ~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~-------~~v~~~A~~aL~~La 247 (464)
..+..+++.+.+ -.++.++-+...|...+.+ +..+-.+.+.|.+.-++.+++. .+ -..-..++....-|.
T Consensus 223 sl~~~l~~ll~~~v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll 301 (604)
T KOG4500|consen 223 SLVFMLLQLLPSMVREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL 301 (604)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh
Confidence 455566666654 4677778888888888877 5556677789999999999876 22 123345555555566
Q ss_pred CCCchHHHHHhcC-cHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-----CChhhHHHH
Q 012413 248 LHENNKTLITNAG-AIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-----GSSRGKKDA 321 (464)
Q Consensus 248 ~~~~~~~~i~~~g-~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-----~~~~v~~~A 321 (464)
..++.-+.+...+ .+..++..+.+.|..++..+..+++|++..++++..+++.|.+..|+++|.. ++.+++.++
T Consensus 302 tGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ 381 (604)
T KOG4500|consen 302 TGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHAC 381 (604)
T ss_pred cCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHH
Confidence 6777777777766 8899999999999999999999999999999999999999999999999975 467788899
Q ss_pred HHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHh-hHHHHHh-cCcHHHHHHHHhcCCHH-
Q 012413 322 LTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE-GREAIVE-ENGIAALVEAIEDGSVK- 398 (464)
Q Consensus 322 ~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~- 398 (464)
+.+|+||.....++..+..+|+++.++..++...++++..-.+.|+.+....+ ....+.. ...+..|++-.++++..
T Consensus 382 lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aG 461 (604)
T KOG4500|consen 382 LSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAG 461 (604)
T ss_pred HHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccch
Confidence 99999999999999999999999999999999999999999999999985544 4555554 44788888888877644
Q ss_pred HHHHHHHHHHHHhhcCH--HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 399 GKEFAVLTLLQLCAESV--KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 399 v~~~A~~aL~~L~~~~~--~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
+--..-+.|..+..++. +-...+.+.|+|+.++.++...+-..+..|.-||..+.
T Consensus 462 v~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 462 VAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred hhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 77777888888887743 33345667899999999999998888888877776554
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-10 Score=119.72 Aligned_cols=258 Identities=17% Similarity=0.123 Sum_probs=216.0
Q ss_pred hHHHHHHHHhcCCC-CHHHHHHHHHHH-HHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcC-CCc
Q 012413 176 QPTVKICIDGLQSS-SVAIKRSAAAKL-RLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSL-HEN 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~-~~~vr~~A~~~L-~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~-~~~ 251 (464)
..-++.|+..|+.. ++..+..|+.-| ..|...+++.-..+.-...||.|+.+|++ .++++...||+||.+|+. -|.
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 35778888888865 888898988888 45566666655555556789999999998 679999999999999998 488
Q ss_pred hHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 252 NKTLITNAGAIKSLVYVLK-TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
....+++.++||.|+.-|. -...++-++++.+|-.|+... -..+..+|++...+..|.=-+..+++.|+.+..|.|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999987554 578899999999999998642 2357889999999999988888999999999999999
Q ss_pred --CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC----CHhhHHHHHhcCcHHHHHHHHhcC----CHHHH
Q 012413 331 --LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG----IAEGREAIVEENGIAALVEAIEDG----SVKGK 400 (464)
Q Consensus 331 --~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~----~~~v~ 400 (464)
.++....+++ ++|.|..+|...+....+.++.++..++. .++.-+.+...|.|....+++.-. +..+.
T Consensus 324 si~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 4555556666 89999999999999999999999999984 355677888899999999999854 44567
Q ss_pred HHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC
Q 012413 401 EFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG 437 (464)
Q Consensus 401 ~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~ 437 (464)
...++.|..+++.++-....+...++...|..+|...
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 7788899999999999999999999999999998763
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=109.41 Aligned_cols=230 Identities=22% Similarity=0.181 Sum_probs=169.1
Q ss_pred CChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCC-chHHHHHh------cCcHHHHHHHHccCCHHHHHHHHHHHHHhcc
Q 012413 219 GAVPALVPLLKC--SDPWTQEHSVTALLNLSLHE-NNKTLITN------AGAIKSLVYVLKTGTETSKQNAACALMSLAL 289 (464)
Q Consensus 219 g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~-~~~~~i~~------~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~ 289 (464)
+....++.+|+. +++++.+..+..+..+..+. ...+.+.. .....++++++..+|..++..|+..|..|..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 335556666654 68899999999999998754 44444443 2257888999999999999999999999987
Q ss_pred cccchhhhhccCChHHHHHHhhc----CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhh-----cC--CCHHH
Q 012413 290 IEENKSSIGACGAIPPLVSLLIY----GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGML-----AG--QGEGM 358 (464)
Q Consensus 290 ~~~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL-----~~--~~~~v 358 (464)
....+..-...+.++.+++.+.+ .+...+..++.+|.+|.+.++.+..+.+.|+++.++.++ .+ .+..+
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 75443333335667888888876 355677899999999999999999999999999999999 22 23566
Q ss_pred HHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcCHH-hHHHHHHcCChHHHHHhhhc
Q 012413 359 AEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED-GSVKGKEFAVLTLLQLCAESVK-NRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 359 ~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~~~~-~~~~i~~~g~i~~Lv~lL~s 436 (464)
+.+++.+++.|+.+++..+.+...+.|+.|+++++. ..+++.+-++.++.|+....+. ....|+..|+++.|..+...
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 999999999999999999999999999999999995 5789999999999999987654 66778888877777666655
Q ss_pred --CCHHHHHHHHHH
Q 012413 437 --GSVRAKHKAETL 448 (464)
Q Consensus 437 --~~~~v~~~A~~a 448 (464)
+|+++.+.-...
T Consensus 295 k~~Dedl~edl~~L 308 (312)
T PF03224_consen 295 KWSDEDLTEDLEFL 308 (312)
T ss_dssp --SSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 478887764443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-09 Score=114.63 Aligned_cols=372 Identities=16% Similarity=0.143 Sum_probs=225.1
Q ss_pred HHhhhhhhhhccCCcccc------cCCcchhHHHHHHhhhhh--cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccc
Q 012413 74 IDMRLGELASKTNDAKSV------KSTISEDDYLNVSQAFSD--FSVCSSDISGELQRLASLPSPENILRQPNENNCQAE 145 (464)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~------~~~~~e~~~~~L~~ll~~--~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~ 145 (464)
.-+.|+.|-++||+-.+. .-...+.....|..++.. ++.+|+-++-.++|+++. ..+.+-... ..+
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~--~w~~l~~e~----~~s 79 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTK--HWSRLSAEV----QQS 79 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHH--HhhcCCHHH----HHH
Confidence 345566666666332220 112233366677777775 899999888888888764 111111000 000
Q ss_pred cCCCchhhhhhhcccC----------chhhHhhhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHH-H
Q 012413 146 LEPEPEPCLGFLQREN----------FSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRV-L 214 (464)
Q Consensus 146 ~~p~l~~lv~~L~~~~----------~s~~i~~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~-~ 214 (464)
+. ..++..++.+. --.++.....++.|+.+++.|+++.+++++..|+.|+.+|..+...-...-. .
T Consensus 80 ik---s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~ 156 (1075)
T KOG2171|consen 80 IK---SSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH 156 (1075)
T ss_pred HH---HHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh
Confidence 11 11122333222 1234444455567899999999999999999999999999988754221100 1
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHh------------------------cCcHHHHHHHH
Q 012413 215 IGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITN------------------------AGAIKSLVYVL 269 (464)
Q Consensus 215 i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~------------------------~g~i~~Lv~lL 269 (464)
+ ....+.+.+.+.+++..||..|+.+++.++.. ++++..... .+++..|+.++
T Consensus 157 ~--~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~ 234 (1075)
T KOG2171|consen 157 L--DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL 234 (1075)
T ss_pred H--HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence 1 02344455666665555999999999998763 223222111 11222333322
Q ss_pred cc------------------------CCHHHHHHHHHHHHHhccccc--chh----------------------------
Q 012413 270 KT------------------------GTETSKQNAACALMSLALIEE--NKS---------------------------- 295 (464)
Q Consensus 270 ~~------------------------~~~~v~~~a~~aL~~Ls~~~~--~~~---------------------------- 295 (464)
.. -+..+|..|+..|..++.... .|.
T Consensus 235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~ 314 (1075)
T KOG2171|consen 235 ESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE 314 (1075)
T ss_pred hhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence 21 245667777777766654310 000
Q ss_pred ----------------hhhc-----cC---ChH----HHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHH
Q 012413 296 ----------------SIGA-----CG---AIP----PLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRP 346 (464)
Q Consensus 296 ----------------~i~~-----~g---~i~----~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~ 346 (464)
..++ .| .+| .+-.+|.+.+..-|.+++.+|+.++.. .+.....+ ..+++.
T Consensus 315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~ 393 (1075)
T KOG2171|consen 315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPI 393 (1075)
T ss_pred cccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHH
Confidence 0000 01 223 333455667777788888888877663 23222222 237888
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHc
Q 012413 347 LVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDG-SVKGKEFAVLTLLQLCAESVKNRGLLVRE 424 (464)
Q Consensus 347 Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~ 424 (464)
++..|+++++.||..|+.+++.++ .....-+.-..+-.++.|+..+.+. +++++..|+.+|-|+....+.....=.=.
T Consensus 394 Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd 473 (1075)
T KOG2171|consen 394 VLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD 473 (1075)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 899999999999999999999999 4455555555567788999999864 67999999999999987654322211113
Q ss_pred CChH-HHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 425 GGIP-PLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 425 g~i~-~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
+.++ .|..+++++.+.+++.++.+|+..++.-+
T Consensus 474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 4555 45556677889999999999999886433
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.9e-09 Score=103.62 Aligned_cols=278 Identities=12% Similarity=0.053 Sum_probs=210.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
.....+..|..++..+...+.+++..++..........-..=....|...+.+ .+++....|+.+|..+...++.|..+
T Consensus 115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~ 194 (442)
T KOG2759|consen 115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF 194 (442)
T ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee
Confidence 35666888999999998888899988876533221110000112334445555 77888899999999999999999999
Q ss_pred HhcCcHHHHHHHHcc--CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCc-
Q 012413 257 TNAGAIKSLVYVLKT--GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLK- 332 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~- 332 (464)
+.++++..++..+.+ .+..++.+.+.+++-|+.++...+.+...+.|+.|.+++++. -..|.+-.+.++.|+....
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 999999999999943 478999999999999999988888887789999999999986 6779999999999999855
Q ss_pred ------chHHHHHHcCCHHHHHHhhcC--CCHHHHHHHH-------HHHHHHhCCH------------------------
Q 012413 333 ------QNKERAVSAGAVRPLVGMLAG--QGEGMAEKAM-------VVLSLLAGIA------------------------ 373 (464)
Q Consensus 333 ------~~~~~iv~~g~v~~Lv~lL~~--~~~~v~~~A~-------~aL~nLa~~~------------------------ 373 (464)
+....++..++.+.+-.+-.. .++++....- .-.-.|+.++
T Consensus 275 ~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~ 354 (442)
T KOG2759|consen 275 DRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWR 354 (442)
T ss_pred hhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHH
Confidence 344566777666665555432 2344432221 1122223221
Q ss_pred hhHHHHHhcC--cHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 012413 374 EGREAIVEEN--GIAALVEAIEDG-SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLG 450 (464)
Q Consensus 374 ~~~~~i~~~g--~i~~Lv~lL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 450 (464)
++...+-+.. .+..|+.+|..+ ++.+-.-|+.=++....+-|+.+..+.+-||=+.+++++.+++++||..|..|+.
T Consensus 355 eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ 434 (442)
T KOG2759|consen 355 ENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQ 434 (442)
T ss_pred HhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHH
Confidence 4455555433 789999999854 5888999999999999999999999999999999999999999999999999998
Q ss_pred HhhcC
Q 012413 451 YLREP 455 (464)
Q Consensus 451 ~L~~~ 455 (464)
.|--+
T Consensus 435 ~lm~~ 439 (442)
T KOG2759|consen 435 KLMVH 439 (442)
T ss_pred HHHhh
Confidence 77543
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.2e-09 Score=107.45 Aligned_cols=213 Identities=18% Similarity=0.073 Sum_probs=156.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
..+..|+..|.+.++.|+..++.+|+.+ ...++.+.|+.+|++.++.++..++.+++..
T Consensus 86 ~~~~~L~~~L~d~~~~vr~aaa~ALg~i-----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r---------- 144 (410)
T TIGR02270 86 LDLRSVLAVLQAGPEGLCAGIQAALGWL-----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAH---------- 144 (410)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcC-----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhh----------
Confidence 3478888888888888888888888533 3446778888888888888888888777652
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHH
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKE 336 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 336 (464)
.....+.|..+|++.++.++..|+.+|+.+ ....+++.|...+.+.++.||..|+.++..+..
T Consensus 145 -~~~~~~~L~~~L~d~d~~Vra~A~raLG~l----------~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~------ 207 (410)
T TIGR02270 145 -RHDPGPALEAALTHEDALVRAAALRALGEL----------PRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS------ 207 (410)
T ss_pred -ccChHHHHHHHhcCCCHHHHHHHHHHHHhh----------ccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC------
Confidence 223466788888888888888888888886 445667888888888888888888888866532
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
.+++..+..+....+......++.++... .. ...++.|..+++++. ++..++.+|+.+...
T Consensus 208 ----~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~---------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p--- 268 (410)
T TIGR02270 208 ----RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GG---------PDAQAWLRELLQAAA--TRREALRAVGLVGDV--- 268 (410)
T ss_pred ----HhHHHHHHHHHhccCccHHHHHHHHHHhC-Cc---------hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc---
Confidence 22455566555555555555445555433 11 257888888888754 899999999998753
Q ss_pred hHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 417 NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 417 ~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
..++.|+..+.+.. +++.|.++++.|+.-+
T Consensus 269 --------~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 269 --------EAAPWCLEAMREPP--WARLAGEAFSLITGMD 298 (410)
T ss_pred --------chHHHHHHHhcCcH--HHHHHHHHHHHhhCCC
Confidence 47899999886543 9999999999998744
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-09 Score=106.07 Aligned_cols=214 Identities=18% Similarity=0.114 Sum_probs=163.4
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHh------cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCc
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGE------SGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGA 261 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~------~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~ 261 (464)
+.+.++....+..+..+..+++...+.+.. ...+.+++.++.++|..++..|+..|..+....+.+..-...+.
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~ 147 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEA 147 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHH
Confidence 568899999999999999888877666665 23688899999999999999999999999876544433333567
Q ss_pred HHHHHHHHcc----CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHh-----hc--CChhhHHHHHHHHHHHhc
Q 012413 262 IKSLVYVLKT----GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL-----IY--GSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 262 i~~Lv~lL~~----~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL-----~~--~~~~v~~~A~~aL~nL~~ 330 (464)
++.++..|.+ ++.+++..++.+|.+|...++.|..+.+.|+++.|..+| .+ .+.+++..++-++|-|+-
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF 227 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF 227 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc
Confidence 7888888875 455678999999999999999999999999999999999 22 266788999999999999
Q ss_pred CcchHHHHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhCCHh--hHHHHHhcCcHHHHHHHHhc--CCHHHHH
Q 012413 331 LKQNKERAVSAGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAGIAE--GREAIVEENGIAALVEAIED--GSVKGKE 401 (464)
Q Consensus 331 ~~~~~~~iv~~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~--~~~~i~~~g~i~~Lv~lL~~--~~~~v~~ 401 (464)
+++..+.+...+.++.|+.+++. ..+.+.+-++.+|.||..... ....++..|+++.+-.+... +|+++..
T Consensus 228 ~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 228 EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999999999965 457889999999999996655 78888887766666555553 3555544
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.3e-09 Score=109.77 Aligned_cols=254 Identities=20% Similarity=0.202 Sum_probs=181.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
+..++.+.+.+.++++.||+.|+.++..+.+..++. +... .++.+..+|.+.++.++..|+.++..+..+++....
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~ 188 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKS 188 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTT
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhh
Confidence 356667788889999999999999999998775543 2222 689999999999999999999999999111211111
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc-chhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE-NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
.-...++.|.+++...++-++...+..|..++.... .... ...++.+..++.+.++.+...++.++..+...+.
T Consensus 189 -~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~- 263 (526)
T PF01602_consen 189 -LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE- 263 (526)
T ss_dssp -HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-
T ss_pred -hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-
Confidence 112245556666678899999999999998876532 2211 3457888888888888999999999988877655
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhhc
Q 012413 335 KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIE-DGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~ 413 (464)
.-..+++.|+.++.+++..++..++..|..++... ...+. .....+..+. +++..++..++..|..++..
T Consensus 264 ----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 264 ----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp ----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred ----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 33347788999999888889999999999998543 12222 2333344555 78888999999999998853
Q ss_pred CHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 012413 414 SVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 414 ~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~ 454 (464)
.+... +++.|...+.. ++++++..+..++..++.
T Consensus 335 --~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 335 --SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp --HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred --cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 33333 47777777744 477888888888887765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.5e-09 Score=110.99 Aligned_cols=259 Identities=20% Similarity=0.173 Sum_probs=166.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLIT 257 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~ 257 (464)
.++.+.+.|.+.++.|+..|+.++..+ +.++..... .-...+..|.+++...+|+++...+..|..++........
T Consensus 153 ~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~-- 228 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKS-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD-- 228 (526)
T ss_dssp HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTT-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH--
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhh-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhh--
Confidence 478888889999999999999999988 332222111 1124455566666789999999999999988875432221
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHH
Q 012413 258 NAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKER 337 (464)
Q Consensus 258 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 337 (464)
....++.+..++++.++.+...++.++..+..... .-..+++.|+.+|.+.++.++..++..|..++... ..
T Consensus 229 ~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~ 300 (526)
T PF01602_consen 229 KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PP 300 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---ch
Confidence 04577888888888888888899888888766544 23345788889998888889999999988888744 11
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcCHH
Q 012413 338 AVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED-GSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 338 iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
.+. .....+..+..+++..++..++.+|..++....... +++.|...+.+ .+.+++..++..++.++...+.
T Consensus 301 ~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 301 AVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp HHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred hhh-hhhhhhheecCCCChhHHHHHHHHHhhcccccchhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence 222 222223333347778888888888888875322111 45556666633 3555666666666665532110
Q ss_pred h---------------------------HHHHHHc-----CChHHHHHhhhc-CCHHHHHHHHHHHHHhhcC
Q 012413 417 N---------------------------RGLLVRE-----GGIPPLVALSQT-GSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 417 ~---------------------------~~~i~~~-----g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~~ 455 (464)
. +..+... ..+..|++.+.+ .++.++..+.|.++..++.
T Consensus 374 ~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~ 445 (526)
T PF01602_consen 374 DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGEL 445 (526)
T ss_dssp SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCc
Confidence 0 1111111 136777777766 4678888888888876653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-09 Score=105.95 Aligned_cols=199 Identities=19% Similarity=0.244 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc
Q 012413 233 PWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY 312 (464)
Q Consensus 233 ~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~ 312 (464)
..+.+.|...|.|++.+-..--++.....|..||+.|...+.++.......|..|+...+++..+.+.|.+..|++++..
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 45677899999999988766678888999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHH
Q 012413 313 GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAI 392 (464)
Q Consensus 313 ~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL 392 (464)
.++.++...+..|.||+-....+.+++..|.+|.|..+|.++.. ..-|+..|+.|+..+..+..+....+|+.++..+
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v 434 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDV 434 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987543 4568889999999999999999999999999988
Q ss_pred hcCCHHHHHHHHHHH-HHHhhcCHHhHHHHHHcCChHHHHHhh
Q 012413 393 EDGSVKGKEFAVLTL-LQLCAESVKNRGLLVREGGIPPLVALS 434 (464)
Q Consensus 393 ~~~~~~v~~~A~~aL-~~L~~~~~~~~~~i~~~g~i~~Lv~lL 434 (464)
-+....-...++.++ -|||.. ..+.+.+.+..++..|.+..
T Consensus 435 ~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceGqgL~~LM~ra 476 (791)
T KOG1222|consen 435 LSGTGSEVDLALIALCINLCLN-KRNAQLVCEGQGLDLLMERA 476 (791)
T ss_pred HhcCCceecHHHHHHHHHHHhc-cccceEEecCcchHHHHHHH
Confidence 765332223333333 456543 34555555666677666654
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.1e-08 Score=95.25 Aligned_cols=184 Identities=22% Similarity=0.194 Sum_probs=156.3
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHH
Q 012413 187 QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSL 265 (464)
Q Consensus 187 ~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~L 265 (464)
.+.+.+-++.|+.-|..++.+ -++...+...|++.+|+..+++.++++|..|+++|+.++.+ |..+..+.+.|+.+.|
T Consensus 93 ~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 456788899999999999877 77778888999999999999999999999999999999985 7888999999999999
Q ss_pred HHHHccC-CHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhc--CChhhHHHHHHHHHHHhcC-cchHHHHHH
Q 012413 266 VYVLKTG-TETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIY--GSSRGKKDALTTLYKLCSL-KQNKERAVS 340 (464)
Q Consensus 266 v~lL~~~-~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~A~~aL~nL~~~-~~~~~~iv~ 340 (464)
+..|.+. +..++..|+.|+..+-.+ +.+...+...+++..|..+|.+ .+..+++.++..+..|... ......+-.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999865 567889999999999887 5677888888889999999999 4778889999999999884 445554445
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 341 AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 341 ~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
.|....++.+....+.++.+.+..++..+..
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 6666667777777788888888887776663
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.6e-08 Score=102.78 Aligned_cols=275 Identities=17% Similarity=0.184 Sum_probs=212.8
Q ss_pred hHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCc-
Q 012413 176 QPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLHEN- 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~~- 251 (464)
..+|+.|.+.+.+ .-.+-|+.|++.|..+++. .|..+ ...|+++|++.|+. .|+++...++..+.++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srk---YR~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---YREEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH---HHHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 4577777877765 4578899999999999965 44554 45678999999987 689999999999999987653
Q ss_pred ------hH----------H-HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc--ccchhhhhc-cCChHHHHHHhh
Q 012413 252 ------NK----------T-LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI--EENKSSIGA-CGAIPPLVSLLI 311 (464)
Q Consensus 252 ------~~----------~-~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~-~g~i~~Li~lL~ 311 (464)
.+ . .+...+.|..|+..+...|..+|..+...|.++-.+ .+.++.+.. .-+|..|+.+|.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 22 1 123477899999999999999999999999998776 466776665 778999999999
Q ss_pred cCChhhHHHHHHHHHHHhcCcchHHHHHH-cCCHHHHHHhhcCCC----HHHHHHHHHHHHHHh-CCHhhHHHHHhcCcH
Q 012413 312 YGSSRGKKDALTTLYKLCSLKQNKERAVS-AGAVRPLVGMLAGQG----EGMAEKAMVVLSLLA-GIAEGREAIVEENGI 385 (464)
Q Consensus 312 ~~~~~v~~~A~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~----~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i 385 (464)
+....+|..++-.|..|++.....++++. ++++..|+.++...+ .-|.+.++..|-||- .+..++..+.+.+-|
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 99999999999999999998777777776 889999999997543 357899999999999 456778888888899
Q ss_pred HHHHHHHhc---CCH------HHH----HHHHHHHHHHhhcC------HHhHHHHHHcCChHHHHHhhhcCC--HHHHHH
Q 012413 386 AALVEAIED---GSV------KGK----EFAVLTLLQLCAES------VKNRGLLVREGGIPPLVALSQTGS--VRAKHK 444 (464)
Q Consensus 386 ~~Lv~lL~~---~~~------~v~----~~A~~aL~~L~~~~------~~~~~~i~~~g~i~~Lv~lL~s~~--~~v~~~ 444 (464)
+.|.++|.. .+. .-| ..++.++..+...+ ..++..+...+++..|..++.++. .+++.-
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence 999988873 221 112 23445555554321 123467888999999999998873 377766
Q ss_pred HHHHHHHhhc
Q 012413 445 AETLLGYLRE 454 (464)
Q Consensus 445 A~~aL~~L~~ 454 (464)
+-.++....+
T Consensus 337 siitvAevVR 346 (970)
T KOG0946|consen 337 SIITVAEVVR 346 (970)
T ss_pred HHHHHHHHHH
Confidence 6666665544
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.9e-08 Score=93.79 Aligned_cols=183 Identities=21% Similarity=0.203 Sum_probs=161.0
Q ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHH
Q 012413 271 TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVG 349 (464)
Q Consensus 271 ~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~ 349 (464)
+.+.+-+.-|..-|..++.+-++...+...|++.+++..+.+.+..+|..|+++|+..+. ++..++.+++.|+.+.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 346777888888888888888999999999999999999999999999999999999999 6678899999999999999
Q ss_pred hhcCCC-HHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcC
Q 012413 350 MLAGQG-EGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIED--GSVKGKEFAVLTLLQLCAESVKNRGLLVREG 425 (464)
Q Consensus 350 lL~~~~-~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g 425 (464)
++...+ ..++.+|+.+++.+- .++.+...+...+|...|...+.+ .+...+..++..+..|.......+..+...|
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 997655 456799999999999 578899999999999999999998 6788999999999999988877778888889
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 426 GIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 426 ~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
....+..+....+.++++.+..++-.+.
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 8888888888888888888877765443
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.6e-08 Score=98.51 Aligned_cols=216 Identities=14% Similarity=0.028 Sum_probs=163.0
Q ss_pred hHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 176 QPTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
...++.|+..|. .++.+++..++.+|.. .+ ...++..|+..|.+.++.++..++.+|+.+-
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~--~~---------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~------- 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLA--QE---------DALDLRSVLAVLQAGPEGLCAGIQAALGWLG------- 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhc--cC---------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-------
Confidence 467888899994 6778887776666631 11 1124899999999999999999999997643
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
..+..+.|+.+|++.++.++..++.++... .....+.++.+|++.++.|+..|+.+|+.+..
T Consensus 115 ---~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---- 176 (410)
T TIGR02270 115 ---GRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR---- 176 (410)
T ss_pred ---chHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----
Confidence 456788999999999999999888777762 22356889999999999999999999998643
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 335 KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
...++.|...+.+.++.|+..|++++..+.. ..++..+..+...........++.++.... .
T Consensus 177 ------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----------~~A~~~l~~~~~~~g~~~~~~l~~~lal~~--~ 238 (410)
T TIGR02270 177 ------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----------RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG--G 238 (410)
T ss_pred ------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHhccCccHHHHHHHHHHhCC--c
Confidence 4477888899999999999999999986654 244566666555544444444444444432 1
Q ss_pred HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 415 ~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
...++.|..+++++. ++..+.++|+.+.+.+
T Consensus 239 ---------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~ 269 (410)
T TIGR02270 239 ---------PDAQAWLRELLQAAA--TRREALRAVGLVGDVE 269 (410)
T ss_pred ---------hhHHHHHHHHhcChh--hHHHHHHHHHHcCCcc
Confidence 146888999998855 9999999999887654
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-08 Score=98.50 Aligned_cols=267 Identities=16% Similarity=0.177 Sum_probs=193.7
Q ss_pred hHHHHHHHHhcCCCCHH--HHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCC-Cc
Q 012413 176 QPTVKICIDGLQSSSVA--IKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLH-EN 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~--vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~-~~ 251 (464)
.+.+..|++++..++.+ ||.+|.+.|..+.. .++++.+...| +..++.+-+. ..++..+..+..|.++-+| ++
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 45677788999988755 59999999977754 45677777766 5666666554 6688999999999999997 57
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHh
Q 012413 252 NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLC 329 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~ 329 (464)
..+.+++.|++..++.-.+..++.+...++.+|.|++.+ .+.+..+++..+-..|..+-.+.+.-++..||-+++.|+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 788999999999999999999999999999999999988 467888889888888888888888889999999999999
Q ss_pred cCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012413 330 SLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 330 ~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 409 (464)
.+++.-..+...|.+..+--++.+.++.-... .+ . ...+++ ...-++.|+.+|.+..-+.|-.++.-++.
T Consensus 336 t~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR--D~-h---d~aQG~----~~d~LqRLvPlLdS~R~EAq~i~AF~l~~ 405 (832)
T KOG3678|consen 336 TNKEVEREVRKSGTLALVEPLVASLDPGRFAR--DA-H---DYAQGR----GPDDLQRLVPLLDSNRLEAQCIGAFYLCA 405 (832)
T ss_pred hhhhhhHHHhhccchhhhhhhhhccCcchhhh--hh-h---hhhccC----ChHHHHHhhhhhhcchhhhhhhHHHHHHH
Confidence 98876666666665544433444444321110 00 0 000000 02257778888886555444444444433
Q ss_pred Hhhc-CHHhHH-HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 410 LCAE-SVKNRG-LLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 410 L~~~-~~~~~~-~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
=+.- +..++. .+.+-|+|+.|.++..+.+.-...-|.+||..|.+.
T Consensus 406 EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 406 EAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 2221 222333 456679999999999988888888899999988764
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-08 Score=102.12 Aligned_cols=272 Identities=13% Similarity=0.085 Sum_probs=189.1
Q ss_pred CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH-h---cCChHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 012413 173 EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG-E---SGAVPALVPLLKCSDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~-~---~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~ 248 (464)
.+|+.+++.|..+|.+++....+.|..+|..++.++.+.-+.-. . .-.+|.++++.++++|.+|..|..++.....
T Consensus 124 ~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~ 203 (885)
T KOG2023|consen 124 QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII 203 (885)
T ss_pred ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheee
Confidence 45688999999999999999999999999999988765432211 1 2358889999999999999999999977654
Q ss_pred CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHH
Q 012413 249 HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKL 328 (464)
Q Consensus 249 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL 328 (464)
.....-.+.-...+..|..+-.+++++||.+.|.+|..|-.....|-.---.+.+..++..-.+.+..|...||.....+
T Consensus 204 ~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 204 IQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 32221122224467778888889999999999999999865422111111145678888888888999999999999999
Q ss_pred hcCcchHHHHHH--cCCHHHHHHhhcCCCH--------------------------------------------------
Q 012413 329 CSLKQNKERAVS--AGAVRPLVGMLAGQGE-------------------------------------------------- 356 (464)
Q Consensus 329 ~~~~~~~~~iv~--~g~v~~Lv~lL~~~~~-------------------------------------------------- 356 (464)
+..+-.+..+.. ...+|.|+.-+...+.
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd 363 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD 363 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence 998855554432 4577777764421110
Q ss_pred ------HHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHH----hcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc--
Q 012413 357 ------GMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAI----EDGSVKGKEFAVLTLLQLCAESVKNRGLLVRE-- 424 (464)
Q Consensus 357 ------~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~-- 424 (464)
.+|.-.+.+|--|+ .+.....++.++-+| .++.-.+|+.++.+||.++.+.- .-+...
T Consensus 364 D~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p~Lp 433 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM---QGFVPHLP 433 (885)
T ss_pred cccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh---hhcccchH
Confidence 01222233333332 222344455555444 45678899999999999985421 112221
Q ss_pred CChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 425 GGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 425 g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
..++.|+.+|.+..+-||..++|+|...+.
T Consensus 434 eLip~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 434 ELIPFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred HHHHHHHHHhccCccceeeeeeeeHhhhhh
Confidence 357888999999999999999999988765
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-07 Score=94.35 Aligned_cols=188 Identities=27% Similarity=0.302 Sum_probs=153.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
..++.+++.+.+.+..+|..|+..++.+. ..-+++.|..+|.+.++.+|..|+.+|+.+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 67888899999999999999999975443 3468999999999999999999999987764
Q ss_pred HhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCCh------------hhHHHHHH
Q 012413 257 TNAGAIKSLVYVLK-TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSS------------RGKKDALT 323 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~------------~v~~~A~~ 323 (464)
...+++.|+.+|. +++..+|..++++|+.+ .+..++.+++..+.+... .++..+..
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~----------~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKL----------GDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc----------CchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 3458999999999 58999999999999997 455568999999988662 34555555
Q ss_pred HHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHH
Q 012413 324 TLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFA 403 (464)
Q Consensus 324 aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 403 (464)
+|+.+ .+...++.+...+.+....++..|+.+|+.+.... ..+...+...+.+.+..++..+
T Consensus 172 ~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 55543 33457889999999999999999999999888644 3566788888888899999999
Q ss_pred HHHHHHHhhc
Q 012413 404 VLTLLQLCAE 413 (464)
Q Consensus 404 ~~aL~~L~~~ 413 (464)
+.+|+.+...
T Consensus 234 ~~~l~~~~~~ 243 (335)
T COG1413 234 LLALGEIGDE 243 (335)
T ss_pred HHHhcccCcc
Confidence 9998888753
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.2e-07 Score=85.32 Aligned_cols=274 Identities=17% Similarity=0.168 Sum_probs=194.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHH
Q 012413 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG-ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLIT 257 (464)
Q Consensus 179 v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~-~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~ 257 (464)
+..+++.|.+.+|.||..|+..|..++.. ..+.... +.-.++.|.+++...++ -+.|+.+|.|++..+..++.+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 44568899999999999999999888776 2222222 24568889999988777 7889999999999999988888
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--c----CChHHHHHHhhcC--Chhh-HHHHHHHHHHH
Q 012413 258 NAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--C----GAIPPLVSLLIYG--SSRG-KKDALTTLYKL 328 (464)
Q Consensus 258 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~----g~i~~Li~lL~~~--~~~v-~~~A~~aL~nL 328 (464)
.. .+..++..+.++...+-...|..|.||+..++....+.. . .++..++.-+-+. +... ....+.++.||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 77 777888888888788888999999999988654333321 1 3444454443332 3222 34567789999
Q ss_pred hcCcchHHHHHHcCCHHH-HHHhhcCCCHHH-HHHHHHHHHHHhCCHhhHHHHHhcC--cHHHHH---------------
Q 012413 329 CSLKQNKERAVSAGAVRP-LVGMLAGQGEGM-AEKAMVVLSLLAGIAEGREAIVEEN--GIAALV--------------- 389 (464)
Q Consensus 329 ~~~~~~~~~iv~~g~v~~-Lv~lL~~~~~~v-~~~A~~aL~nLa~~~~~~~~i~~~g--~i~~Lv--------------- 389 (464)
++.+.++..+.+...++. .+--+.+++..+ +...++.|.|.|-.......++..+ ..+.++
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~ 239 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMA 239 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHh
Confidence 999999888876554433 222233455666 4457899999986655555555422 233333
Q ss_pred ------HHHh-----cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcCCC
Q 012413 390 ------EAIE-----DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 390 ------~lL~-----~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~~~~ 457 (464)
+++. ++++.++..-+.+|..||.. ...|..+++.|+-+.|.++-+. .++++++.+.....++.+-.+
T Consensus 240 ~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e~ 318 (353)
T KOG2973|consen 240 KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLEP 318 (353)
T ss_pred cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhccc
Confidence 3443 24788999999999999965 4678889999977777776655 478999999999988887444
Q ss_pred C
Q 012413 458 E 458 (464)
Q Consensus 458 ~ 458 (464)
+
T Consensus 319 ~ 319 (353)
T KOG2973|consen 319 E 319 (353)
T ss_pred c
Confidence 3
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.3e-07 Score=89.81 Aligned_cols=184 Identities=27% Similarity=0.297 Sum_probs=137.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
...++.+...|.+.++.+|..|+.+|+.+- ...+++.|+.+|. +.+..++..|+++|+.+-
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-----------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~------- 134 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGELG-----------DPEAVPPLVELLENDENEGVRAAAARALGKLG------- 134 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccC-----------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC-------
Confidence 457777788888999999999998775443 3467889999998 588999999999998765
Q ss_pred HHHhcCcHHHHHHHHccCCH------------HHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHH
Q 012413 255 LITNAGAIKSLVYVLKTGTE------------TSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDAL 322 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~------------~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~ 322 (464)
+..++..|+..+++... .++..++.+|..+ .+...++.++.++.+.+..++..|.
T Consensus 135 ---~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa 201 (335)
T COG1413 135 ---DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAAA 201 (335)
T ss_pred ---chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHH
Confidence 33457788888877652 4566666666664 6667899999999999999999999
Q ss_pred HHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHH
Q 012413 323 TTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEF 402 (464)
Q Consensus 323 ~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 402 (464)
.+|+.+.... ..+.+.+...+.+....++..++.+|+.+-. ...+..++..+.+.+..++..
T Consensus 202 ~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~----------~~~~~~l~~~l~~~~~~~~~~ 263 (335)
T COG1413 202 SALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGD----------EEAVDALAKALEDEDVILALL 263 (335)
T ss_pred HHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc----------chhHHHHHHHHhccchHHHHH
Confidence 9999986644 3466888889999999999999999987764 234555555555555544444
Q ss_pred HHHHHH
Q 012413 403 AVLTLL 408 (464)
Q Consensus 403 A~~aL~ 408 (464)
+...++
T Consensus 264 ~~~~~~ 269 (335)
T COG1413 264 AAAALG 269 (335)
T ss_pred HHHHhc
Confidence 444443
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.4e-07 Score=98.34 Aligned_cols=343 Identities=15% Similarity=0.114 Sum_probs=207.7
Q ss_pred HHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCC-CchhhhhhhcccCc--hhhHhhhcCC---
Q 012413 100 YLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEP-EPEPCLGFLQRENF--STEIIESISP--- 172 (464)
Q Consensus 100 ~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p-~l~~lv~~L~~~~~--s~~i~~~~~~--- 172 (464)
..=+.|-+.| ...+|..++++++-.+...+........ ..-++| .+..+...++..+. ...+.+.+.+
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~-----~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e 235 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDK-----FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE 235 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHH-----HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh
Confidence 3334445555 3338888999999887766411111110 011455 22222333333332 1222222211
Q ss_pred ---CCchHHHHHHH----Hhc--CCCCHHHHHHHHHHHHHHhccCchhHHHHHh--cCChHHHHHhhcC--CC-------
Q 012413 173 ---EDLQPTVKICI----DGL--QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE--SGAVPALVPLLKC--SD------- 232 (464)
Q Consensus 173 ---~~~~~~v~~Lv----~~L--~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~--~g~i~~Ll~lL~~--~~------- 232 (464)
.-+.+.+..++ +.- ++-+..+|..|+..|..++..-+...+.... ...++.++.++.. .|
T Consensus 236 ~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 236 SEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred hchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 11223333322 222 3467889999999999998874443333222 2235555555433 11
Q ss_pred -------HHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc-cCChH
Q 012413 233 -------PWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA-CGAIP 304 (464)
Q Consensus 233 -------~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~g~i~ 304 (464)
..-...|..+|-.++.+-.++..+ .-.++.+-.+|++.+..-|..++.+|..++..-. +..... ...++
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~ 392 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLALHLGGKQVL--PPLFEALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIGNLPKILP 392 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHhcCChhheh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHH
Confidence 124667888888888764443321 2245667778899999999999999999875421 111111 34567
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhCC-HhhHHHHHh
Q 012413 305 PLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQG-EGMAEKAMVVLSLLAGI-AEGREAIVE 381 (464)
Q Consensus 305 ~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~-~~~~~~i~~ 381 (464)
..+..|.++++.||.+|+.+++.++.+ ....++...+-.++.|+..+.+.. ..++.+|+.+|-|+... +...-.=.=
T Consensus 393 ~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL 472 (1075)
T KOG2171|consen 393 IVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL 472 (1075)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 777888999999999999999999983 444445555557888999997765 68999999999999843 221111111
Q ss_pred cCcHH-HHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH--cCChHHHHHhhhcCC-H---HHHHHHHHHHHHhh
Q 012413 382 ENGIA-ALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR--EGGIPPLVALSQTGS-V---RAKHKAETLLGYLR 453 (464)
Q Consensus 382 ~g~i~-~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~s~~-~---~v~~~A~~aL~~L~ 453 (464)
.+.+. .+..++.++.+.+++.++.+|+..+.. .+..+.. .-.+|.|...|++.+ . .+|.+....+.-++
T Consensus 473 d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A---A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 473 DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA---AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH---HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 45555 444455578899999999999999853 3333433 356899999998865 3 45555555555444
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.4e-07 Score=96.64 Aligned_cols=211 Identities=17% Similarity=0.107 Sum_probs=156.4
Q ss_pred HHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHH---HhcCC--CchHHHHHhcCcHHHHHHHHccCCHHHHHHHH
Q 012413 213 VLIGESGAVPALVPLLKC------SDPWTQEHSVTALL---NLSLH--ENNKTLITNAGAIKSLVYVLKTGTETSKQNAA 281 (464)
Q Consensus 213 ~~i~~~g~i~~Ll~lL~~------~~~~v~~~A~~aL~---~La~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~ 281 (464)
....+...++.+++++.. .+++.+..++.-.. ..+.. -.+++.+.+.-....+..+....|...+..||
T Consensus 319 ~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~ 398 (678)
T KOG1293|consen 319 LPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAAL 398 (678)
T ss_pred hHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHH
Confidence 334455566666666542 33444433333221 12221 23455555554555555555667888999999
Q ss_pred HHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHH
Q 012413 282 CALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMA 359 (464)
Q Consensus 282 ~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~ 359 (464)
.++.+++.. ...+...-+..++.+|++++.+++..+...++++|+|+.. ....+.+|++.|+++.+..++.+.+..++
T Consensus 399 l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r 478 (678)
T KOG1293|consen 399 LCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSR 478 (678)
T ss_pred HHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHH
Confidence 999888765 3444445667789999999999999999999999999988 78899999999999999999999999999
Q ss_pred HHHHHHHHHHhCC--HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH
Q 012413 360 EKAMVVLSLLAGI--AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR 423 (464)
Q Consensus 360 ~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 423 (464)
..+.|+|+++.-+ +..+......-....++.++.+++..|++.|...|+||.+.+.+.-+.+.+
T Consensus 479 ~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 479 ANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 9999999999943 334555555556788899999999999999999999999987666554444
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-06 Score=87.57 Aligned_cols=283 Identities=14% Similarity=0.068 Sum_probs=199.1
Q ss_pred CchHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhc-----CChHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 012413 174 DLQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGES-----GAVPALVPLLKCSDPWTQEHSVTALLNLS 247 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~-----g~i~~Ll~lL~~~~~~v~~~A~~aL~~La 247 (464)
+....+..++.+|+. ...++....+..+..+...++.....+.+. ....+++.+|..++..+...|+..|..+.
T Consensus 50 ~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 50 LSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 335677778888875 568888888888888888877766666653 56788888999999999999999999987
Q ss_pred CC-CchHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC--ChhhHHHHHH
Q 012413 248 LH-ENNKTLITNAGAIKSLVYVLKTG-TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG--SSRGKKDALT 323 (464)
Q Consensus 248 ~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~A~~ 323 (464)
.. +.........-.+.-|...|+.+ +...+..++.+|..|...++.|..+.+.++++.|+.+|+.. +.+....++-
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 53 22111111111333455566554 46778888899999999999999999988999999999864 4578899999
Q ss_pred HHHHHhcCcchHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhCCH-------hhHHHHHhcCcHHHHHHHHhc-
Q 012413 324 TLYKLCSLKQNKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLAGIA-------EGREAIVEENGIAALVEAIED- 394 (464)
Q Consensus 324 aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~-------~~~~~i~~~g~i~~Lv~lL~~- 394 (464)
++|-|+-.++..+.+...+.++.|+.+++.. .+.+.+-++.+|.||...+ .....++..|+.+ +++.|..
T Consensus 210 ~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~r 288 (429)
T cd00256 210 CIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQR 288 (429)
T ss_pred HHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcC
Confidence 9999999988888888889999999999754 4778888999999999632 2344556556544 5555553
Q ss_pred --CCHHHHHHHHH-------HHHHHhhc--------------CH---------HhHHHHHHc--CChHHHHHhhh-cCCH
Q 012413 395 --GSVKGKEFAVL-------TLLQLCAE--------------SV---------KNRGLLVRE--GGIPPLVALSQ-TGSV 439 (464)
Q Consensus 395 --~~~~v~~~A~~-------aL~~L~~~--------------~~---------~~~~~i~~~--g~i~~Lv~lL~-s~~~ 439 (464)
.|+++..--.. .+-.++.. +| ++...+.+. .++..|+++|. ++++
T Consensus 289 k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 289 KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 34544332111 11122210 11 223444443 45688889985 4567
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 012413 440 RAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 440 ~v~~~A~~aL~~L~~~~~ 457 (464)
.+..-|+-=++.+.++-|
T Consensus 369 ~~laVAc~Dige~vr~~P 386 (429)
T cd00256 369 IILAVACHDIGEYVRHYP 386 (429)
T ss_pred ceeehhhhhHHHHHHHCc
Confidence 777777777777777543
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.7e-07 Score=93.43 Aligned_cols=269 Identities=13% Similarity=0.039 Sum_probs=178.5
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLV 266 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv 266 (464)
..|.+++.+|+.++.+++..-...+..+-...+..+|+++|.+++..++..+..+|+|+... .+.|..+...|+|..|.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 46788999999999999888777777766788999999999999999999999999999986 78999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcccccchhh--hhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHHc--
Q 012413 267 YVLKTGTETSKQNAACALMSLALIEENKSS--IGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSA-- 341 (464)
Q Consensus 267 ~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~--i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~-- 341 (464)
.++.+.+..++..+.|+|.++..+.+.... ....=.-..++.+..+++.+|++.+...|+||+-+ .+..+.+++.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~ 547 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK 547 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence 999999999999999999999988544332 22222345677788889999999999999999875 3555555542
Q ss_pred CCHHHHHHhhc-CCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHH--------HhcCCHHHHHHHHHHHHHHh
Q 012413 342 GAVRPLVGMLA-GQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEA--------IEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 342 g~v~~Lv~lL~-~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~l--------L~~~~~~v~~~A~~aL~~L~ 411 (464)
..+....-.++ .....+......-+.++. ..+..+.... .|..+.++.. ..+...+...++.|.+.++.
T Consensus 548 ~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am-~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~ 626 (678)
T KOG1293|consen 548 DVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAM-EGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLT 626 (678)
T ss_pred HHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcc
Confidence 12222222221 112222222222223332 2222111111 1222222211 11345677889999999998
Q ss_pred hcCH---HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCCC
Q 012413 412 AESV---KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGP 460 (464)
Q Consensus 412 ~~~~---~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~~ 460 (464)
.... ..+...--.++.++.... .+.++-....|+..+.-.+.+..+
T Consensus 627 ~~~s~s~~dr~~~~~n~i~e~~~k~---~~sd~~la~ki~~~~~l~~~~~~s 675 (678)
T KOG1293|consen 627 TTDSSSNFDRSNLKLNCIWELNNKL---WNSDVSLATKIAIENGLEPGHSPS 675 (678)
T ss_pred CCCCCcccchhhccccceechhhhc---ccchhHHHHHHHHHhcccccCCCC
Confidence 6522 223333334444444333 344567777787777766555443
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.4e-07 Score=94.63 Aligned_cols=274 Identities=15% Similarity=0.089 Sum_probs=179.0
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
+...++.+++..+++++.+|..|+.++-.+.-.....--.- =...++.|..+-.+++++||...|.+|..|..-...|-
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~-iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl 250 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVH-IDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL 250 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence 35688888999999999999999999965544322211111 13567777788888999999999999998865322221
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--cCChHHHHH----------HhhcC-C-------
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--CGAIPPLVS----------LLIYG-S------- 314 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Li~----------lL~~~-~------- 314 (464)
.=.-.+.|+..+..-++.++.+-..||.....++..+-.+..+.. ...||.|+. ||.+. +
T Consensus 251 ~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr 330 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR 330 (885)
T ss_pred ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence 112356788888888899999999999999999988744444433 345566553 23310 0
Q ss_pred --------------------------------------hhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCH
Q 012413 315 --------------------------------------SRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGE 356 (464)
Q Consensus 315 --------------------------------------~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~ 356 (464)
-.+|+..+.+|.-|+.. .++.+... .+|.|-+.|.++.=
T Consensus 331 eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~-l~PlLk~~L~~~~W 407 (885)
T KOG2023|consen 331 EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPI-LLPLLKEHLSSEEW 407 (885)
T ss_pred hhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh--hHHHHHHH-HHHHHHHHcCcchh
Confidence 12444444444443330 01111111 34555555556555
Q ss_pred HHHHHHHHHHHHHhCCHhhHHHHHh--cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC--HHhHHHHHHcCChHHHHH
Q 012413 357 GMAEKAMVVLSLLAGIAEGREAIVE--ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES--VKNRGLLVREGGIPPLVA 432 (464)
Q Consensus 357 ~v~~~A~~aL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~--~~~~~~i~~~g~i~~Lv~ 432 (464)
.+++.+.-+|+.+|..- -+.++. ...++-|+.+|.+..+-||...+|+|+..+..- ......+ ..++..|++
T Consensus 408 ~vrEagvLAlGAIAEGc--M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ll~ 483 (885)
T KOG2023|consen 408 KVREAGVLALGAIAEGC--MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEGLLR 483 (885)
T ss_pred hhhhhhHHHHHHHHHHH--hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHHHHH
Confidence 67888889999888411 011111 136888999999999999999999998877531 1112222 235666777
Q ss_pred hhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 433 LSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 433 lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
.+-+++.+|+++|+.|...+-+.-
T Consensus 484 ~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 484 RLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhc
Confidence 777899999999999998876543
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-06 Score=92.41 Aligned_cols=334 Identities=13% Similarity=0.096 Sum_probs=228.8
Q ss_pred CCcchhHHHHHHhhhhh--cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhc
Q 012413 93 STISEDDYLNVSQAFSD--FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESI 170 (464)
Q Consensus 93 ~~~~e~~~~~L~~ll~~--~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~ 170 (464)
.+.-+|.++-|+.=..+ ...=|++|+.+|+-++. .+...+..-| +++++..|+++..+++++.+
T Consensus 17 ~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga~G-----------mk~li~vL~~D~~D~E~ik~- 82 (970)
T KOG0946|consen 17 QQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGAQG-----------MKPLIQVLQRDYMDPEIIKY- 82 (970)
T ss_pred cccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHHcc-----------cHHHHHHHhhccCCHHHHHH-
Confidence 34466778888876665 44458889888887642 2332332222 45667777777766666552
Q ss_pred CCCCchHHHHHHHHhcCCCC-HHHHHHHH--HHHHHHhccCchhHH-HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 012413 171 SPEDLQPTVKICIDGLQSSS-VAIKRSAA--AKLRLLAKNRSDNRV-LIGESGAVPALVPLLKCSDPWTQEHSVTALLNL 246 (464)
Q Consensus 171 ~~~~~~~~v~~Lv~~L~s~~-~~vr~~A~--~~L~~La~~~~~~r~-~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~L 246 (464)
++..|.-.+.+++ +.|....- .-++. ...+ .+...+.|..|+..++..|..||..+...|.++
T Consensus 83 -------~LdTl~il~~~dd~~~v~dds~qsdd~g~------~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsal 149 (970)
T KOG0946|consen 83 -------ALDTLLILTSHDDSPEVMDDSTQSDDLGL------WIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSAL 149 (970)
T ss_pred -------HHHHHHHHHhcCcchhhcccchhhhHHHH------HHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHH
Confidence 3333333344332 22221111 00100 0112 334578999999999999999999999999998
Q ss_pred cCC--CchHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc-hhhhhccCChHHHHHHhhcC---Ch-hhH
Q 012413 247 SLH--ENNKTLITN-AGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN-KSSIGACGAIPPLVSLLIYG---SS-RGK 318 (464)
Q Consensus 247 a~~--~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~-~~~i~~~g~i~~Li~lL~~~---~~-~v~ 318 (464)
-.+ .+.++.+.. .-+|..|+.+|.+..+.+|-.++..|..|..+... +..++-.+++..|+.++..+ +. -|.
T Consensus 150 ls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVv 229 (970)
T KOG0946|consen 150 LSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVV 229 (970)
T ss_pred HhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 764 466766654 77999999999999999999999999999988544 44444588999999999874 33 478
Q ss_pred HHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCC---CHHH----------HHHHHHHHHHHhC--C-----HhhHH
Q 012413 319 KDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQ---GEGM----------AEKAMVVLSLLAG--I-----AEGRE 377 (464)
Q Consensus 319 ~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~---~~~v----------~~~A~~aL~nLa~--~-----~~~~~ 377 (464)
..++..|-||-+ +..|+..|.+.+.+|.|..+|... +.++ .-.++.++..+.. + ..++.
T Consensus 230 eDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk 309 (970)
T KOG0946|consen 230 EDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQK 309 (970)
T ss_pred HHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999 567999999999999999888532 1111 2235556666653 2 24567
Q ss_pred HHHhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcC---------ChHHHHHhh-hcCC-HHHHHH
Q 012413 378 AIVEENGIAALVEAIEDG--SVKGKEFAVLTLLQLCAESVKNRGLLVREG---------GIPPLVALS-QTGS-VRAKHK 444 (464)
Q Consensus 378 ~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g---------~i~~Lv~lL-~s~~-~~v~~~ 444 (464)
.+...+++..|..++-++ ..+++..+..++.+....+..++..+.+-. .|-.|...+ .+.. ...|-.
T Consensus 310 ~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcA 389 (970)
T KOG0946|consen 310 ALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCA 389 (970)
T ss_pred HHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHH
Confidence 888899999999999876 578999999999999999999998887631 122222222 2233 366666
Q ss_pred HHHHHHHhh
Q 012413 445 AETLLGYLR 453 (464)
Q Consensus 445 A~~aL~~L~ 453 (464)
+...++.+-
T Consensus 390 v~ycf~s~l 398 (970)
T KOG0946|consen 390 VLYCFRSYL 398 (970)
T ss_pred HHHHHHHHH
Confidence 666665543
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.2e-06 Score=90.13 Aligned_cols=253 Identities=13% Similarity=0.068 Sum_probs=180.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHH-HHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKL-RLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKT 254 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L-~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~ 254 (464)
+-+..|.+.|.+.+...++.|++.+ ...+.+ .+. ..+.+-+++++.+++.++++.....|.+.+.. ++..-
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH
Confidence 3455556777787877777887755 444444 221 23566677888999999999999999999873 44322
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
. ++..|.+=++++++.+|..|+.+|+++-.. +..+ -.++.+.+.|.+.++.||+.|+-++.++-....
T Consensus 105 L-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p- 172 (746)
T PTZ00429 105 L-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-SVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM- 172 (746)
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-HHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-
Confidence 2 566778888889999999999999987321 1111 135667788888999999999999999876332
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 335 KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
+.+.+.|.++.|.++|.+.++.|..+|+.+|..+....... .-...+.+..|+..+.+-++..|...+.+|....-.+
T Consensus 173 -elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~ 250 (746)
T PTZ00429 173 -QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD 250 (746)
T ss_pred -ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Confidence 23345678889999999999999999999999998532221 1233556777888888888888888887775533222
Q ss_pred HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 415 ~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.... ...+..+...|++.++.|...|+.++-.+..+
T Consensus 251 ~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 251 KESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred cHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 1111 24577778888888899999998888877643
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.4e-06 Score=91.82 Aligned_cols=264 Identities=13% Similarity=0.023 Sum_probs=189.5
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchH
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNK 253 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~ 253 (464)
++.......++.+.+.+..+|+-.--.|.+++..+++..- -++..+.+=+.+++|.+|..|+++|+++-..
T Consensus 65 DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~---- 135 (746)
T PTZ00429 65 DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS---- 135 (746)
T ss_pred CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH----
Confidence 4456777778899999999999999999888887665422 2567788888899999999999999987532
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
.+.+ -.++.+.+.|.+.++.||..|+.++.++-.... +.+.+.|.++.|.++|.+.++.|..+|+.+|..+.....
T Consensus 136 -~i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 136 -SVLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred -HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence 1111 256778889999999999999999999854322 334567888999999999999999999999999987433
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
.. .-...+.+..|+..|.+.++-.+...+.+|.... +..... ....+..+...|++.++.|...|+.++.++...
T Consensus 212 ~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 212 EK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred hh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 22 1123446677888887666555666666664422 211111 135677888888899999999999999999864
Q ss_pred C-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 414 S-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 414 ~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
. +.....+. .....+|+.+ .++++++|.-+...|..|....+
T Consensus 287 ~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 287 CSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred CCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH
Confidence 2 22222111 1223666766 45678899999888887776443
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.5e-07 Score=95.58 Aligned_cols=211 Identities=16% Similarity=0.117 Sum_probs=164.7
Q ss_pred hHHHHHhhcCC-CHHHHHHHHHHHHHhcC--CCchHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhccc-ccchh
Q 012413 221 VPALVPLLKCS-DPWTQEHSVTALLNLSL--HENNKTLITNAGAIKSLVYVLKTG-TETSKQNAACALMSLALI-EENKS 295 (464)
Q Consensus 221 i~~Ll~lL~~~-~~~v~~~A~~aL~~La~--~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~-~~~~~ 295 (464)
+..|++=|+.. |+..+..|+.=|+.+.. +++.-.-|--.-.+|.|+.+|+.+ +.++...||+||.+|+.. +....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 45566656654 88888888888877643 344444444456899999999986 789999999999999987 78888
Q ss_pred hhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-
Q 012413 296 SIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI- 372 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~- 372 (464)
.+++.++||.|++-|.. .-..+.++++.+|..|++ ++. .+.++|++...+.+|.=-...+++.|+.+..|+|..
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999876654 677899999999999988 443 468899999999999766678899999999999953
Q ss_pred -HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc---CHHhHHHHHHcCChHHHHHhhhc
Q 012413 373 -AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE---SVKNRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 373 -~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~s 436 (464)
++.-..+. .++|.|..+|...+.+..+.++.|+..++.. .+..-+.+...|.|.....|+.-
T Consensus 326 ~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv 391 (1051)
T KOG0168|consen 326 RSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV 391 (1051)
T ss_pred CCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence 33233333 4799999999999999999999999988753 45555566677777777776654
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.1e-06 Score=84.40 Aligned_cols=172 Identities=13% Similarity=0.103 Sum_probs=144.5
Q ss_pred HHHHhcCChHHHHHhhcCCCHH--HHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcc
Q 012413 213 VLIGESGAVPALVPLLKCSDPW--TQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLAL 289 (464)
Q Consensus 213 ~~i~~~g~i~~Ll~lL~~~~~~--v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~ 289 (464)
..+...|+++.|+.++..++.+ ++..|+..|-.+. ..+|+..++..| +..++.+-+. +..++....+..|.+|-+
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 4566789999999999997755 5889999987765 457788888876 4444444443 567899999999999999
Q ss_pred cc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc--chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 012413 290 IE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK--QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL 366 (464)
Q Consensus 290 ~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~--~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL 366 (464)
|+ +..+.+++.|++..++-.++..++.+.+.++-+|+|.+.+. +.+.+|++..+.+.|.-+-.+.+.-.+.+|+.+.
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 95 67889999999999999999999999999999999999854 6888999999999999998888888899999999
Q ss_pred HHHhCCHhhHHHHHhcCcHH
Q 012413 367 SLLAGIAEGREAIVEENGIA 386 (464)
Q Consensus 367 ~nLa~~~~~~~~i~~~g~i~ 386 (464)
+.|+.+.+.-..+...|.+.
T Consensus 332 ~vlat~KE~E~~VrkS~Tla 351 (832)
T KOG3678|consen 332 AVLATNKEVEREVRKSGTLA 351 (832)
T ss_pred hhhhhhhhhhHHHhhccchh
Confidence 99999888877777777443
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.5e-06 Score=72.62 Aligned_cols=149 Identities=19% Similarity=0.142 Sum_probs=121.5
Q ss_pred cCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHH
Q 012413 259 AGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKER 337 (464)
Q Consensus 259 ~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 337 (464)
-+.+..|+.-.+. .+.+.+++...-|.|.+.++-+-..+.+..++...++.|..++..++..+.+.|+|+|..+.+...
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3456667766554 588999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 012413 338 AVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTL 407 (464)
Q Consensus 338 iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 407 (464)
|++++++|..+..+.++...+.-.|+..+..|+ .....+..+....++..+.+.-.+.+.+.+..|-..|
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl 165 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFL 165 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999 4455677777655555544444344444444444333
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.2e-05 Score=78.94 Aligned_cols=338 Identities=16% Similarity=0.111 Sum_probs=226.1
Q ss_pred cchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhh---cccCc-----hh-
Q 012413 95 ISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFL---QRENF-----ST- 164 (464)
Q Consensus 95 ~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L---~~~~~-----s~- 164 (464)
--+.-++|...-|+| +..+|-.|.+.+=.++....+. .++.+..+...+ ..+.+ ..
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~--------------v~~~Fn~iFdvL~klsaDsd~~V~~~ae 146 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE--------------VLVYFNEIFDVLCKLSADSDQNVRGGAE 146 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC--------------cccchHHHHHHHHHHhcCCccccccHHH
Confidence 357788999999999 9999999999988775432221 222222222222 11110 11
Q ss_pred ---hHhhhcC-----CCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH-hcCChHHHHHhhcCCCHHH
Q 012413 165 ---EIIESIS-----PEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG-ESGAVPALVPLLKCSDPWT 235 (464)
Q Consensus 165 ---~i~~~~~-----~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~-~~g~i~~Ll~lL~~~~~~v 235 (464)
..+..++ .-.+...|+.|-..+...++..|..-+..|.-+-...+. +.+. -....+.|..+|.++.+++
T Consensus 147 LLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~--~m~~yl~~~ldGLf~~LsD~s~eV 224 (675)
T KOG0212|consen 147 LLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDL--EMISYLPSLLDGLFNMLSDSSDEV 224 (675)
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcH--HHHhcchHHHHHHHHHhcCCcHHH
Confidence 1111111 234567788888888888999999999888777554322 2221 1356777889999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCC
Q 012413 236 QEHSVTALLNLSLHENNKTLITN-AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGS 314 (464)
Q Consensus 236 ~~~A~~aL~~La~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~ 314 (464)
+..+-.+|.++-..-.++...++ ...++.++.-++++++.++..|+..|.....-....-...-.|.+..++.++.+..
T Consensus 225 r~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e 304 (675)
T KOG0212|consen 225 RTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTE 304 (675)
T ss_pred HHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCc
Confidence 98877777665332111111112 45789999999999999999998888887655444444445677778888887765
Q ss_pred hh-hHHHHHH---HHHHHhcCcchHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHH
Q 012413 315 SR-GKKDALT---TLYKLCSLKQNKERAVS-AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALV 389 (464)
Q Consensus 315 ~~-v~~~A~~---aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv 389 (464)
+. ++..+.. .|..++..+...+. ++ ...+..|...+.++..+.+..++..+..|-....++-..........|+
T Consensus 305 ~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL 383 (675)
T KOG0212|consen 305 EMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLL 383 (675)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHH
Confidence 53 4433332 34444444433333 33 3366888889999889999999999998887777777777788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 390 EAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 390 ~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
.-|.+.++.+...+...+.++|.....- .. -..+..|+++...+..-++.++.-+++.++
T Consensus 384 ~tLsd~sd~vvl~~L~lla~i~~s~~~~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 384 KTLSDRSDEVVLLALSLLASICSSSNSP-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLC 443 (675)
T ss_pred HhhcCchhHHHHHHHHHHHHHhcCcccc-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 9999999999999999999999764321 00 112444555555566677777777777765
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5e-05 Score=73.81 Aligned_cols=277 Identities=14% Similarity=0.150 Sum_probs=196.5
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhH----HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNR----VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHEN 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r----~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~ 251 (464)
+...+.|-..|..++..|+.-++..++.+..+.+.+. ..+++.|..+.++.++-.++.++-..|...|..++.-++
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 4566677778888999999999999999988877442 345578999999999999999999999999999999888
Q ss_pred hHHHHHhcCcHHHH--HHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhc-CChhhHHHHHHHHHH
Q 012413 252 NKTLITNAGAIKSL--VYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIY-GSSRGKKDALTTLYK 327 (464)
Q Consensus 252 ~~~~i~~~g~i~~L--v~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~n 327 (464)
.-..+.+......+ ..+-...+.-+|......+..+... ++.....-..|.+..|..=|+- .+.-|+.++......
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 88888877766543 3344445666777888888777665 4555566667877777666655 688899999999999
Q ss_pred HhcCcchHHHHHHcCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhC----CHhhHHHHHh--cCcHHHHHHHHhcCCHHH
Q 012413 328 LCSLKQNKERAVSAGAVRPLVGMLAGQG--EGMAEKAMVVLSLLAG----IAEGREAIVE--ENGIAALVEAIEDGSVKG 399 (464)
Q Consensus 328 L~~~~~~~~~iv~~g~v~~Lv~lL~~~~--~~v~~~A~~aL~nLa~----~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v 399 (464)
|+.....++.+.++|.++.+..++...+ +.-...++...+.+-+ .+..-+.+.+ --.|..-.+++...+++.
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 9998888888899999999999996443 4445545554444332 2222233333 124666778888899999
Q ss_pred HHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhh---hcCC-HHHHHHHHHHHHHhhc
Q 012413 400 KEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALS---QTGS-VRAKHKAETLLGYLRE 454 (464)
Q Consensus 400 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL---~s~~-~~v~~~A~~aL~~L~~ 454 (464)
+..|+.+++.|++..+ .++.+...| -|..-.++ .+.+ ..-+..+..+|.+|+.
T Consensus 321 ieaAiDalGilGSnte-GadlllkTg-ppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 321 IEAAIDALGILGSNTE-GADLLLKTG-PPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHHhccCCcc-hhHHHhccC-ChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 9999999999997654 344444433 33333333 2222 2334445555555543
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4e-06 Score=71.39 Aligned_cols=154 Identities=16% Similarity=0.056 Sum_probs=129.0
Q ss_pred cCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHH
Q 012413 300 CGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREA 378 (464)
Q Consensus 300 ~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 378 (464)
.+.+..|+.=... .+.+.+.....=|+|.+-++-|-..+.+..+++..+..|...+..+.+.+++.|+|+|-.+.+.+.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3445566655554 488899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 379 IVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 379 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
|.++++++.++..+.++...+...|+.++..|+......+..+..-.++..+.+.-.+.+.+.+--|...|....
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999877777777766555666655555556666767776666543
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00018 Score=69.51 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=161.0
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
...++.+.+++....+ -..|+.+|.|++++ +..++.+.+. .+..++..+.++....-...|.+|.|+++.++....
T Consensus 43 ~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ 118 (353)
T KOG2973|consen 43 EALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAA 118 (353)
T ss_pred hhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHH
Confidence 4567777778877666 66899999999998 7777777766 888888888888777888999999999998755443
Q ss_pred HHh-------cCcHHHHHHHHccCCH--HHHHHHHHHHHHhcccccchhhhhccCChH--HHHHHhhcCChhhHH-HHHH
Q 012413 256 ITN-------AGAIKSLVYVLKTGTE--TSKQNAACALMSLALIEENKSSIGACGAIP--PLVSLLIYGSSRGKK-DALT 323 (464)
Q Consensus 256 i~~-------~g~i~~Lv~lL~~~~~--~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~--~Li~lL~~~~~~v~~-~A~~ 323 (464)
+.. .|.+.........+-. .--.+.+-.+.||+..+.+|..+.+...+| .|+.+ .+++..+|+ -.++
T Consensus 119 ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~Gvag 197 (353)
T KOG2973|consen 119 LLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAG 197 (353)
T ss_pred HHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHH
Confidence 321 3344444444443322 233567888899999988888887765433 22222 335556665 5788
Q ss_pred HHHHHhcCcchHHHHHHc--CCHHHHH---------------------Hhhc-----CCCHHHHHHHHHHHHHHhCCHhh
Q 012413 324 TLYKLCSLKQNKERAVSA--GAVRPLV---------------------GMLA-----GQGEGMAEKAMVVLSLLAGIAEG 375 (464)
Q Consensus 324 aL~nL~~~~~~~~~iv~~--g~v~~Lv---------------------~lL~-----~~~~~v~~~A~~aL~nLa~~~~~ 375 (464)
+|.|.|-...+...+.+. ..+|.++ ++|- +++++++..-+.+|.-||....+
T Consensus 198 tlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G 277 (353)
T KOG2973|consen 198 TLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG 277 (353)
T ss_pred HHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh
Confidence 999998887777776652 1223322 2221 24567899999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhhc
Q 012413 376 REAIVEENGIAALVEAIE-DGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 376 ~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~ 413 (464)
|+.+.+.|+-+.+-++=+ .++++++..+-...-.|...
T Consensus 278 Re~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 278 REVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred HHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 999999887765555544 35677777666666666543
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.7e-06 Score=85.30 Aligned_cols=260 Identities=14% Similarity=0.089 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccC
Q 012413 194 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTG 272 (464)
Q Consensus 194 r~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~ 272 (464)
-.+++.+|..+++.-...|..+.+...+++|+++|.+++..+.-.+...++|..-. ...+..+.+.|.|..|+.++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 34567778888888788888899999999999999998888888999999998775 67788899999999999999999
Q ss_pred CHHHHHHHHHHHHHhccccc--chhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc-c---hHHHHHHc---C-
Q 012413 273 TETSKQNAACALMSLALIEE--NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK-Q---NKERAVSA---G- 342 (464)
Q Consensus 273 ~~~v~~~a~~aL~~Ls~~~~--~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~-~---~~~~iv~~---g- 342 (464)
|..+|.+..|+|.++..+.+ .+-.....-++..++++..++.-.++.+.+.+|.|++-+. . .++.++.. .
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 99999999999999988743 3445566677999999999999999999999999997732 2 22222211 1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhh-HHHHHh-cCcHHHHHHHHh----c----------------------
Q 012413 343 AVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEG-REAIVE-ENGIAALVEAIE----D---------------------- 394 (464)
Q Consensus 343 ~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~~-~g~i~~Lv~lL~----~---------------------- 394 (464)
....|++.+...++-.....+..|.+++..++. +..+.+ ...+..+-+.|. .
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 345566666666665566667777777743332 223332 222222222211 1
Q ss_pred ---------------------------CCHHHHHHHHHHHHHHhhc---------CHHhHHHHHHcCChHHHHHhhhcCC
Q 012413 395 ---------------------------GSVKGKEFAVLTLLQLCAE---------SVKNRGLLVREGGIPPLVALSQTGS 438 (464)
Q Consensus 395 ---------------------------~~~~v~~~A~~aL~~L~~~---------~~~~~~~i~~~g~i~~Lv~lL~s~~ 438 (464)
.++++-....|.+.|+... ..+....+.+.|.-+.|+.+..+++
T Consensus 646 l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S 725 (743)
T COG5369 646 LSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS 725 (743)
T ss_pred ccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence 1122444556666665432 1123345556676677777777778
Q ss_pred HHHHHHHHHHHHHhh
Q 012413 439 VRAKHKAETLLGYLR 453 (464)
Q Consensus 439 ~~v~~~A~~aL~~L~ 453 (464)
+.||+++..||.++.
T Consensus 726 l~vrek~~taL~~l~ 740 (743)
T COG5369 726 LIVREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHHHhhh
Confidence 899999999998874
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.4e-05 Score=80.96 Aligned_cols=234 Identities=15% Similarity=0.113 Sum_probs=165.2
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchh---HHHHHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDN---RVLIGESGAVPALVPLLKC-------SDPWTQEHSVTALLN 245 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~---r~~i~~~g~i~~Ll~lL~~-------~~~~v~~~A~~aL~~ 245 (464)
.+.++.|+..|+..+..-|..++..+..+..+.+.. ++.+.+.=+.+.|-.+|+. +....+.-|+.+|..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 467889999999988778888999999998887643 3457777778889999987 345778899999999
Q ss_pred hcCCCchHHHHHhcCcHHHHHHHHccCCH-HHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHH
Q 012413 246 LSLHENNKTLITNAGAIKSLVYVLKTGTE-TSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTT 324 (464)
Q Consensus 246 La~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~a 324 (464)
++..++....-.-.+-||.|+..+...+. .+...+..+|..++.+++++..+.+.|+++.|.+.+.+ .+.....|+.+
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 99977654322223479999999988877 99999999999999999999999999999999999988 66778899999
Q ss_pred HHHHhcCcchH-----HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhh--HHHHHhc----CcHHHHHHHHh
Q 012413 325 LYKLCSLKQNK-----ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEG--REAIVEE----NGIAALVEAIE 393 (464)
Q Consensus 325 L~nL~~~~~~~-----~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~--~~~i~~~----g~i~~Lv~lL~ 393 (464)
|.+++...... ...+ ...++.+-..+...+...+...+..|..+-...+. ....... .....+..+++
T Consensus 163 L~~Lls~~~~~~~~~~~~~l-~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLL-HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHhcchhhhhhhHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 99987743211 1111 12445555555555555677777777777643321 1111112 23344445555
Q ss_pred cC-CHHHHHHHHHHHHHHh
Q 012413 394 DG-SVKGKEFAVLTLLQLC 411 (464)
Q Consensus 394 ~~-~~~v~~~A~~aL~~L~ 411 (464)
+. .+.-|..|......|.
T Consensus 242 sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLL 260 (543)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 43 4555555555555554
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00027 Score=72.06 Aligned_cols=272 Identities=17% Similarity=0.162 Sum_probs=190.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
..+.+...+-+++.+||..|.++++.+..+ +..-+.+.+.+.--.++..|.. .+..=|+.|...+..+...+++.+.
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~ 104 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE 104 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc
Confidence 334444344455599999999999999988 4445566676665556666655 3344578888888777654332222
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
.-.|.+..++.+..+.+..++..+..+|+.|+... -+.+..+||+..|++.+.++...+....+.++..+..++..+
T Consensus 105 -~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 105 -IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred -CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 24578899999999999999999999999998752 235678999999999999877678889999999999999888
Q ss_pred HHHHHcCCHHHHHHhhcCC-------CH--HHHHHHHHHHHHHhCCHhhHHHHHh--cCcHHHHHHHHhcCCHHHHHHHH
Q 012413 336 ERAVSAGAVRPLVGMLAGQ-------GE--GMAEKAMVVLSLLAGIAEGREAIVE--ENGIAALVEAIEDGSVKGKEFAV 404 (464)
Q Consensus 336 ~~iv~~g~v~~Lv~lL~~~-------~~--~v~~~A~~aL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~A~ 404 (464)
..+...--+..++.-+.+. +. +-...+..++..+-.+=.+--.+.. ..++..|+..|..+.+++|....
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 8776544456666655443 12 2334445555555432222222222 24788888888888888888777
Q ss_pred HHHHHHhhc------------------CHH----------------------h------------HHHHHHcCChHHHHH
Q 012413 405 LTLLQLCAE------------------SVK----------------------N------------RGLLVREGGIPPLVA 432 (464)
Q Consensus 405 ~aL~~L~~~------------------~~~----------------------~------------~~~i~~~g~i~~Lv~ 432 (464)
..+..+-.- +.. . -..+.++|.++.|++
T Consensus 262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~ 341 (371)
T PF14664_consen 262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVE 341 (371)
T ss_pred HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHH
Confidence 777666430 000 0 235778999999999
Q ss_pred hhhcC-CHHHHHHHHHHHHHhh
Q 012413 433 LSQTG-SVRAKHKAETLLGYLR 453 (464)
Q Consensus 433 lL~s~-~~~v~~~A~~aL~~L~ 453 (464)
+..+. ++.+..+|.-.|+.+-
T Consensus 342 li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 342 LIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHhcCCCchHHHHHHHHHHHHH
Confidence 99997 8899999999988763
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.9e-05 Score=80.31 Aligned_cols=272 Identities=15% Similarity=0.165 Sum_probs=183.4
Q ss_pred CCchHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHhhcC--CCHHHHHHHHHHHHHhcC
Q 012413 173 EDLQPTVKICIDGLQSSSV-AIKRSAAAKLRLLAKNRSDNRVLIGE-SGAVPALVPLLKC--SDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~~-~vr~~A~~~L~~La~~~~~~r~~i~~-~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~ 248 (464)
+-|+..++.|+.....+.+ .+|..++.+|+.++.+-..- ..... ..++-.++.=.+. ++..+|..|..+|.|--.
T Consensus 125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe 203 (859)
T KOG1241|consen 125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLE 203 (859)
T ss_pred hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHH
Confidence 4567788888877776554 49999999999999884332 22222 3445555554443 677899999999987421
Q ss_pred -------CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHH
Q 012413 249 -------HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKD 320 (464)
Q Consensus 249 -------~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~ 320 (464)
++..|.. .+...++.-++++.+++..|..+|..|..- -+.-........++.-+.-+++++.+|...
T Consensus 204 f~~~nF~~E~ern~-----iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQ 278 (859)
T KOG1241|consen 204 FTKANFNNEMERNY-----IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQ 278 (859)
T ss_pred HHHHhhccHhhhce-----eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 1122222 344556677788999999999999987653 233333333334555667778899999999
Q ss_pred HHHHHHHHhcCcch-H---HHHHH---------------cCCHHHHHHhhcCCC----HH---HHHHHHHHHHHHhCCHh
Q 012413 321 ALTTLYKLCSLKQN-K---ERAVS---------------AGAVRPLVGMLAGQG----EG---MAEKAMVVLSLLAGIAE 374 (464)
Q Consensus 321 A~~aL~nL~~~~~~-~---~~iv~---------------~g~v~~Lv~lL~~~~----~~---v~~~A~~aL~nLa~~~~ 374 (464)
+...=.++|..+-. . ...++ .+++|.|+++|...+ .+ ....|..||.-++.
T Consensus 279 aiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~--- 355 (859)
T KOG1241|consen 279 AIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ--- 355 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH---
Confidence 99887777763211 0 11111 357788999885321 22 24445555554442
Q ss_pred hHHHHHhcCcHHHHHHHH----hcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 012413 375 GREAIVEENGIAALVEAI----EDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLG 450 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~lL----~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 450 (464)
......++..+.++ ++++-+-+..|+.+++.+-......+..=...++++.++.++.++.-.++..++|.|+
T Consensus 356 ----~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlg 431 (859)
T KOG1241|consen 356 ----CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLG 431 (859)
T ss_pred ----HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHH
Confidence 12234455555554 4678888999999999999876666666566788999999999888899999999999
Q ss_pred HhhcCCC
Q 012413 451 YLREPRQ 457 (464)
Q Consensus 451 ~L~~~~~ 457 (464)
.+++.-+
T Consensus 432 rI~d~l~ 438 (859)
T KOG1241|consen 432 RIADFLP 438 (859)
T ss_pred HHHhhch
Confidence 9998765
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.4e-05 Score=79.63 Aligned_cols=304 Identities=15% Similarity=0.107 Sum_probs=196.1
Q ss_pred CCcchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCc-ccCcccccCCCchhhhhhhcccCchhhHhhhc
Q 012413 93 STISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPN-ENNCQAELEPEPEPCLGFLQRENFSTEIIESI 170 (464)
Q Consensus 93 ~~~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~-~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~ 170 (464)
-+.-++.++-|+++..| +..|| +.++-+.|+.+ +.+.+.. .-+..+ .+|++..-+. .-+ ...+.++
T Consensus 120 ~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLik-----dIVte~~~tFsL~~-~ipLL~eriy---~~n--~~tR~fl 187 (675)
T KOG0212|consen 120 LVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIK-----DIVTESASTFSLPE-FIPLLRERIY---VIN--PMTRQFL 187 (675)
T ss_pred ccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHH-----HhccccccccCHHH-HHHHHHHHHh---cCC--chHHHHH
Confidence 34467889999999999 55554 55666666521 1111100 111111 3343322111 111 1111111
Q ss_pred C----------C----CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHH-HhcCChHHHHHhhcCCCHHH
Q 012413 171 S----------P----EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLI-GESGAVPALVPLLKCSDPWT 235 (464)
Q Consensus 171 ~----------~----~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i-~~~g~i~~Ll~lL~~~~~~v 235 (464)
. + +.+...++-|...|++++++||..+=.+|.++-.+= ...... --...++.++.-+.++++.+
T Consensus 188 v~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI-~s~P~s~d~~~~i~vlv~~l~ss~~~i 266 (675)
T KOG0212|consen 188 VSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI-RSSPSSMDYDDMINVLVPHLQSSEPEI 266 (675)
T ss_pred HHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-hcCccccCcccchhhccccccCCcHHH
Confidence 0 0 345667888899999999999977766555443220 010111 12467889999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHH-HHHHHHH---HHHHhcccccchhhhhccC-ChHHHHHHh
Q 012413 236 QEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTET-SKQNAAC---ALMSLALIEENKSSIGACG-AIPPLVSLL 310 (464)
Q Consensus 236 ~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-v~~~a~~---aL~~Ls~~~~~~~~i~~~g-~i~~Li~lL 310 (464)
+..|..-|..+..-+...-...-.|.+..+++++.+..+. .+..+.. -|..+...+..++. ++.| .+..|.+.+
T Consensus 267 q~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l 345 (675)
T KOG0212|consen 267 QLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYL 345 (675)
T ss_pred HHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHh
Confidence 9999998888876544434444577778888888776653 3333322 33444443333333 4443 457777888
Q ss_pred hcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHH
Q 012413 311 IYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVE 390 (464)
Q Consensus 311 ~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~ 390 (464)
.++..+.|..++.-+..|-....++-.......++.|+.-|.+.+..+...++..++++|..+..... -..+..|++
T Consensus 346 ~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~ 422 (675)
T KOG0212|consen 346 SDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLE 422 (675)
T ss_pred hcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHH
Confidence 88899999999998888877666665555677899999999999999999999999999976544311 224556777
Q ss_pred HHhcCCHHHHHHHHHHHHHHhhc
Q 012413 391 AIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 391 lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
+.+++..-+...+..++++||.-
T Consensus 423 ~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 423 MFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HHhhhhHHHHhhhhHHHHHHHHH
Confidence 77777788888999999999863
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.5e-06 Score=66.64 Aligned_cols=86 Identities=33% Similarity=0.403 Sum_probs=71.9
Q ss_pred hHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc
Q 012413 221 VPALVPLL-KCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA 299 (464)
Q Consensus 221 i~~Ll~lL-~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~ 299 (464)
||.|++.| +++++.+|..|+.+|+.+. ...+++.|+.+++++++.+|..|+++|..+ .+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 67899988 8899999999999998542 224799999999999999999999999997 34
Q ss_pred cCChHHHHHHhhcC-ChhhHHHHHHHHH
Q 012413 300 CGAIPPLVSLLIYG-SSRGKKDALTTLY 326 (464)
Q Consensus 300 ~g~i~~Li~lL~~~-~~~v~~~A~~aL~ 326 (464)
..+++.|.+++.++ +..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 55899999999886 4556888888875
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0001 Score=78.88 Aligned_cols=234 Identities=19% Similarity=0.103 Sum_probs=169.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc----hHHHHHhcCcHHHHHHHHcc-------CCHHHHHHHHHHHHHhc
Q 012413 220 AVPALVPLLKCSDPWTQEHSVTALLNLSLHEN----NKTLITNAGAIKSLVYVLKT-------GTETSKQNAACALMSLA 288 (464)
Q Consensus 220 ~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~----~~~~i~~~g~i~~Lv~lL~~-------~~~~v~~~a~~aL~~Ls 288 (464)
.++..+.+|+..+.+=|-.++..+.++..+.+ .++.+.++=+.+.|-++|++ +....+.-|+..|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 45667888998886667777777888887543 24467888889999999998 34678889999999999
Q ss_pred ccccchhhhhccCChHHHHHHhhcCCh-hhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 012413 289 LIEENKSSIGACGAIPPLVSLLIYGSS-RGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLS 367 (464)
Q Consensus 289 ~~~~~~~~i~~~g~i~~Li~lL~~~~~-~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~ 367 (464)
..++.+..-.-.+-||.|++.+.+.+. .+...+..+|..++.++++++.+++.|+++.|++.+.. ++...+.|+.+|.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 887665443335679999999998877 99999999999999999999999999999999999987 5566888999999
Q ss_pred HHhCCHhhHHHHHh-----cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHh-----HHHHHHcCChHHHHHhhhcC
Q 012413 368 LLAGIAEGREAIVE-----ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKN-----RGLLVREGGIPPLVALSQTG 437 (464)
Q Consensus 368 nLa~~~~~~~~i~~-----~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~-----~~~i~~~g~i~~Lv~lL~s~ 437 (464)
+++...... ...+ ...+..+-..+.......+-..+..|..+-...+.. ...-+-..+...|..++++.
T Consensus 165 ~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 165 NLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 987432211 1111 134555556665556667777888888887665311 11122233445556666664
Q ss_pred -CHHHHHHHHHHHHHhhcC
Q 012413 438 -SVRAKHKAETLLGYLREP 455 (464)
Q Consensus 438 -~~~v~~~A~~aL~~L~~~ 455 (464)
.+.-|..|..+...+.+.
T Consensus 244 ~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 244 LTPSQRDPALNLAASLLDL 262 (543)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 567777777777666654
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.1e-05 Score=71.81 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=37.4
Q ss_pred CcHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 383 NGIAALVEAIED--GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 383 g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
-.|+.|.+.|.+ +.+-+|..|+.+|+.++.. ..++.|.+.+.++.+-|++.+.-+|.++-
T Consensus 218 ~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 218 AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 356666666653 3566666777777666632 24666666666666666666666666543
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00098 Score=67.07 Aligned_cols=235 Identities=15% Similarity=0.080 Sum_probs=177.9
Q ss_pred CChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHh-------cCcHHHHHHHHccCCHHHHHHHHHHHHHhccc
Q 012413 219 GAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITN-------AGAIKSLVYVLKTGTETSKQNAACALMSLALI 290 (464)
Q Consensus 219 g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~-------~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~ 290 (464)
..+..++.++++ ..++....++..+..+-.....+..+.. .-.-+..+.+|...+.-+...+.+.+..++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 457788888887 6677888888888888766555544331 22467889999999999998899999998765
Q ss_pred ccchhhhhccC-ChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcC--CCHHHHHHHHHHH
Q 012413 291 EENKSSIGACG-AIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAG--QGEGMAEKAMVVL 366 (464)
Q Consensus 291 ~~~~~~i~~~g-~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~--~~~~v~~~A~~aL 366 (464)
...+....+.. ....|-..+.+ .+......|+++|..+...++.|-.++.+.++..++..+.+ .+..++.+.+-++
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 33222111111 13344555655 57788889999999999999999999999999999999942 3467799999999
Q ss_pred HHHhCCHhhHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcCH------HhHHHHHHcCChHHHHHhhhc--C
Q 012413 367 SLLAGIAEGREAIVEENGIAALVEAIED-GSVKGKEFAVLTLLQLCAESV------KNRGLLVREGGIPPLVALSQT--G 437 (464)
Q Consensus 367 ~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~~~------~~~~~i~~~g~i~~Lv~lL~s--~ 437 (464)
.-|+-++...+.+..-+.|+.|.+++++ ..++|-+-++.++.|++...+ .....++..++.+.+-.+.+. +
T Consensus 225 WlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkys 304 (442)
T KOG2759|consen 225 WLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYS 304 (442)
T ss_pred HHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCC
Confidence 9999999988888788999999999996 578899999999999998764 445667888877777777665 4
Q ss_pred CHHHHHHHHHHHHHhh
Q 012413 438 SVRAKHKAETLLGYLR 453 (464)
Q Consensus 438 ~~~v~~~A~~aL~~L~ 453 (464)
++++...-..+-..|.
T Consensus 305 DEDL~~di~~L~e~L~ 320 (442)
T KOG2759|consen 305 DEDLVDDIEFLTEKLK 320 (442)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 6777665554444443
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00029 Score=71.79 Aligned_cols=253 Identities=15% Similarity=0.075 Sum_probs=179.9
Q ss_pred HHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccC--CHHHH
Q 012413 200 KLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTG--TETSK 277 (464)
Q Consensus 200 ~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~ 277 (464)
.|..+-+..+..+..+.-....+.+..++=+++.+++..+.+++..+..+++.-+.+.+.+.--.++..|..+ +..=|
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence 3444445556555555544555566655555559999999999999999998888888888777777777664 45678
Q ss_pred HHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHH
Q 012413 278 QNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEG 357 (464)
Q Consensus 278 ~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~ 357 (464)
++|...+..+....++... ...|.+..++.+..+.+...+..++.+|+.|+..++ +.+...||+..|+..+.++...
T Consensus 86 ~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~ 162 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFS 162 (371)
T ss_pred HHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHh
Confidence 8999988887655433222 356778999999999999999999999999988432 2457899999999999886666
Q ss_pred HHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcC-------CH--HHHHHHHHHHHHHhhcCHHhHHHH-HHcCCh
Q 012413 358 MAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDG-------SV--KGKEFAVLTLLQLCAESVKNRGLL-VREGGI 427 (464)
Q Consensus 358 v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~--~v~~~A~~aL~~L~~~~~~~~~~i-~~~g~i 427 (464)
+.+..+.++..+-.++..|+.+...--++.++..+.+. +. +.-..+..++..+-..=+.--... -+..++
T Consensus 163 ~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~l 242 (371)
T PF14664_consen 163 ISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGL 242 (371)
T ss_pred HHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHH
Confidence 88888999999999999999887744455555555433 12 234455555555543211000000 112578
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 428 PPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 428 ~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
..|+..|+.+++++|+.....+-.+-+-
T Consensus 243 ksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 243 KSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 8999999999999999988888776553
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00081 Score=67.90 Aligned_cols=236 Identities=19% Similarity=0.144 Sum_probs=180.5
Q ss_pred HHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC------Cch----HHHHHhcCcHHHHHH
Q 012413 198 AAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH------ENN----KTLITNAGAIKSLVY 267 (464)
Q Consensus 198 ~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~------~~~----~~~i~~~g~i~~Lv~ 267 (464)
++-+..+|.- |..-..+++.++|+.|+.+|.+++.++....+..|..|+.. .++ ...+++.+.++.|++
T Consensus 105 IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 105 IQEMHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 3344444444 66667888999999999999999999999999999999752 122 245677889999999
Q ss_pred HHccCCHHHH------HHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcC--ChhhHHHHHHHHHHHhcC-cchHHH
Q 012413 268 VLKTGTETSK------QNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYG--SSRGKKDALTTLYKLCSL-KQNKER 337 (464)
Q Consensus 268 lL~~~~~~v~------~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~A~~aL~nL~~~-~~~~~~ 337 (464)
-+..-++.++ .++...+-|+... ++....+++.|.+..|+..+... -..-+..|..+|.-+..+ ++++..
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~ 263 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKL 263 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhh
Confidence 8877555544 4556667777655 56778888888888888865543 456778889999988885 458777
Q ss_pred HHHcCCHHHHHHhhc---CC------CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 012413 338 AVSAGAVRPLVGMLA---GQ------GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLL 408 (464)
Q Consensus 338 iv~~g~v~~Lv~lL~---~~------~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 408 (464)
+..-.|+..|+.-+. .. ..+.-++...+|+.+-..+.++..++...|++...-+++. ....+..|..+|-
T Consensus 264 ~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd 342 (536)
T KOG2734|consen 264 LGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLD 342 (536)
T ss_pred hcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHH
Confidence 778889999888773 12 2345677888888888899999999998888866666665 6667888999998
Q ss_pred HHhhcCH--HhHHHHHHcCChHHHHHhhh
Q 012413 409 QLCAESV--KNRGLLVREGGIPPLVALSQ 435 (464)
Q Consensus 409 ~L~~~~~--~~~~~i~~~g~i~~Lv~lL~ 435 (464)
.+....+ .++..+++.+|+..+..+..
T Consensus 343 ~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 343 HAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 8887655 78999999999988888765
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.3e-05 Score=78.86 Aligned_cols=341 Identities=14% Similarity=0.068 Sum_probs=205.9
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCC-chhhhhhhcccCchhh--------
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPE-PEPCLGFLQRENFSTE-------- 165 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~-l~~lv~~L~~~~~s~~-------- 165 (464)
+.+.+..+..-|.| .+.+|+-.++.+.++-+...- . +++|.++.. ++-++..++.....+.
T Consensus 714 ~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~-------~--diderleE~lidgil~Afqeqtt~d~vml~gfg~ 784 (1172)
T KOG0213|consen 714 SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGA-------A--DIDERLEERLIDGILYAFQEQTTEDSVMLLGFGT 784 (1172)
T ss_pred chHHHHHHhhhhccccHHHHHHHHHHHHHHHhcccc-------c--cccHHHHHHHHHHHHHHHHhcccchhhhhhhHHH
Confidence 33444444444444 777888888887776433221 1 111222222 2222334444332111
Q ss_pred Hhhhc---CCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhH--HHHHhcCChHHHHHhhcCCCHHHHHHHH
Q 012413 166 IIESI---SPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNR--VLIGESGAVPALVPLLKCSDPWTQEHSV 240 (464)
Q Consensus 166 i~~~~---~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r--~~i~~~g~i~~Ll~lL~~~~~~v~~~A~ 240 (464)
+...+ ....+...+..++..|++.++.+|..|+..+..++.--..+. +.+...|. .|..-|..+.|++.-..+
T Consensus 785 V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsIL 862 (1172)
T KOG0213|consen 785 VVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSIL 862 (1172)
T ss_pred HHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHH
Confidence 11111 123445677777889999999999999999988874311111 12222333 366778889999988877
Q ss_pred HHHHHhcCCCchHHHH-HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhH
Q 012413 241 TALLNLSLHENNKTLI-TNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGK 318 (464)
Q Consensus 241 ~aL~~La~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~ 318 (464)
.||+.+...-...+.. --.+.+|.|...|++..+.++.++...++.++.. ++....=-....-=.|+++|+..+..+|
T Consensus 863 gAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iR 942 (1172)
T KOG0213|consen 863 GAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIR 942 (1172)
T ss_pred HHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777775421111100 1257899999999999999999999999999876 3321111112333468899999999999
Q ss_pred HHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHH
Q 012413 319 KDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVK 398 (464)
Q Consensus 319 ~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 398 (464)
++|...++.+++.-. -..++..|++-|+..+...+.-..-+++-.+.. ..-..++|+|+.--..++..
T Consensus 943 Raa~nTfG~IakaIG------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~------c~pFtVLPalmneYrtPe~n 1010 (1172)
T KOG0213|consen 943 RAAVNTFGYIAKAIG------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAET------CGPFTVLPALMNEYRTPEAN 1010 (1172)
T ss_pred HHHHhhhhHHHHhcC------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhh------cCchhhhHHHHhhccCchhH
Confidence 999999998876211 122445555555544333333223333322210 00123566666666667888
Q ss_pred HHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCCCC
Q 012413 399 GKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPS 461 (464)
Q Consensus 399 v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~~~ 461 (464)
||.-.+.+|+.+...- +..++.+ .-+.|.|-+.|.+.+.--|.-|+.++++++=...+..|
T Consensus 1011 VQnGVLkalsf~FeyigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~ 1072 (1172)
T KOG0213|consen 1011 VQNGVLKALSFMFEYIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGC 1072 (1172)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCc
Confidence 8888888887776431 2223333 23578888888889999999999999999876665544
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00024 Score=69.10 Aligned_cols=239 Identities=15% Similarity=0.134 Sum_probs=179.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc-----hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchh
Q 012413 221 VPALVPLLKCSDPWTQEHSVTALLNLSLHEN-----NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKS 295 (464)
Q Consensus 221 i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~-----~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~ 295 (464)
.|.|-.=|..++..++.-++..++.+..+.+ ....++.+|..+.++..+..++.++...|...|..++..+..-.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHH
Confidence 3444444566888899999999999877644 12355689999999999999999999999999999999988888
Q ss_pred hhhccCChHHH--HHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhC
Q 012413 296 SIGACGAIPPL--VSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 296 ~i~~~g~i~~L--i~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~ 371 (464)
.+.+......+ ..+-...+.-+|-.....+..+.. +++.....-..|.+..|..-|+. .+.-++..++.....|+.
T Consensus 164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae 243 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE 243 (524)
T ss_pred HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence 78776655543 444455667778888888888877 66666666778888888888876 566678899999999999
Q ss_pred CHhhHHHHHhcCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcCHHh---HHHHHHc--CChHHHHHhhhcCCHHHHHH
Q 012413 372 IAEGREAIVEENGIAALVEAIED--GSVKGKEFAVLTLLQLCAESVKN---RGLLVRE--GGIPPLVALSQTGSVRAKHK 444 (464)
Q Consensus 372 ~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~~~~~~---~~~i~~~--g~i~~Lv~lL~s~~~~v~~~ 444 (464)
..-+++.+.++|.|..+...+.. .++--+-.++...+.+....... -..+.+. -.++.-++.+..++++....
T Consensus 244 teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaiea 323 (524)
T KOG4413|consen 244 TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEA 323 (524)
T ss_pred HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHH
Confidence 88999999999999999999984 45666666776666655421100 0111111 23555567778889999999
Q ss_pred HHHHHHHhhcCCCCC
Q 012413 445 AETLLGYLREPRQEG 459 (464)
Q Consensus 445 A~~aL~~L~~~~~~~ 459 (464)
|..+|+.+...-.+.
T Consensus 324 AiDalGilGSnteGa 338 (524)
T KOG4413|consen 324 AIDALGILGSNTEGA 338 (524)
T ss_pred HHHHHHhccCCcchh
Confidence 999999998765543
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.2e-06 Score=56.21 Aligned_cols=41 Identities=37% Similarity=0.554 Sum_probs=38.2
Q ss_pred CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 414 SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 414 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
+++++..+++.|++++|+.+|+++++++++.|+|+|++|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999974
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00021 Score=74.95 Aligned_cols=264 Identities=16% Similarity=0.131 Sum_probs=172.8
Q ss_pred CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCch
Q 012413 173 EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN 252 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~ 252 (464)
-++.+.++.++....+..+.||..|..+...+...-+.... .-.+|.++.-+.......+..++..|+.++...+-
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~ 287 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPK 287 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH
Confidence 45567888888888899999999998888666543111100 12244444444445667889999999999887766
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 253 KTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
.-.......||.|.+.|.+..+++|..+..+|..++...++.. | .-.+|.|++.+.++...+... ...|+.=+-..
T Consensus 288 qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I--~~~ip~Lld~l~dp~~~~~e~-~~~L~~ttFV~ 363 (569)
T KOG1242|consen 288 QLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-I--QKIIPTLLDALADPSCYTPEC-LDSLGATTFVA 363 (569)
T ss_pred HHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-H--HHHHHHHHHHhcCcccchHHH-HHhhcceeeee
Confidence 6677778899999999999999999999999999987655543 1 124677888887765443332 22222111100
Q ss_pred chHHHHHHcC----CHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh--cCcHHHHHHHHhcCCHHHHHHHHHH
Q 012413 333 QNKERAVSAG----AVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE--ENGIAALVEAIEDGSVKGKEFAVLT 406 (464)
Q Consensus 333 ~~~~~iv~~g----~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~a 406 (464)
.|++- .+|.|..-+...+....+.++.++.|||.--+....+.. ...++.|-..+.+..|++|..++++
T Consensus 364 -----~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarA 438 (569)
T KOG1242|consen 364 -----EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARA 438 (569)
T ss_pred -----eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHH
Confidence 12222 345566666677788899999999999954332333322 3456677777777889999999999
Q ss_pred HHHHhhcCHHhHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHhh
Q 012413 407 LLQLCAESVKNRGLLVREGGIPPLVALSQTGS-VRAKHKAETLLGYLR 453 (464)
Q Consensus 407 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~v~~~A~~aL~~L~ 453 (464)
|+.+-..-. ...+ .+.++.|.+.+.+.. ..-+..++..|....
T Consensus 439 L~~l~e~~g--~~~f--~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl 482 (569)
T KOG1242|consen 439 LGALLERLG--EVSF--DDLIPELSETLTSEKSLVDRSGAAQDLSEVL 482 (569)
T ss_pred HHHHHHHHH--hhcc--cccccHHHHhhccchhhhhhHHHhhhHHHHH
Confidence 988874311 1111 567777777776653 234444444444433
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=1e-05 Score=64.52 Aligned_cols=86 Identities=29% Similarity=0.394 Sum_probs=71.1
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHH
Q 012413 179 VKICIDGL-QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLIT 257 (464)
Q Consensus 179 v~~Lv~~L-~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~ 257 (464)
|+.|++.| +++++.+|..++.+|+.+. ...+++.|+.+++++++.++..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 56788888 8899999999999997432 2356999999999999999999999999873
Q ss_pred hcCcHHHHHHHHccC-CHHHHHHHHHHHH
Q 012413 258 NAGAIKSLVYVLKTG-TETSKQNAACALM 285 (464)
Q Consensus 258 ~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~ 285 (464)
...+++.|.+++.++ +..++..|+.+|+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 345899999999886 5667899988874
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0002 Score=76.45 Aligned_cols=282 Identities=12% Similarity=0.047 Sum_probs=178.0
Q ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHHhccCchhHHHHHhcC-ChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchH
Q 012413 178 TVKICIDGLQ--SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESG-AVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNK 253 (464)
Q Consensus 178 ~v~~Lv~~L~--s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g-~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~ 253 (464)
.+..++.... .++..||..|..+|.+--.-...+-..=.+.+ .+......-+++|.+++..|..+|..|.. .-+.-
T Consensus 173 iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 173 ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455554 46789999999999654321100000001112 23445566677999999999999999875 33333
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-c----chhhh-----------h---ccCChHHHHHHhhcC-
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-E----NKSSI-----------G---ACGAIPPLVSLLIYG- 313 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~----~~~~i-----------~---~~g~i~~Li~lL~~~- 313 (464)
..-........-+..++++++++..++...=.+++..+ + ..+.+ . -.+.+|.|+++|...
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 33333335555667788999999999998888777431 1 01100 0 125678888888652
Q ss_pred ------ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHH
Q 012413 314 ------SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEENGIA 386 (464)
Q Consensus 314 ------~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~ 386 (464)
+...-++|-.||.-++..-+ +.|+. -++|-+-+-++.++-.-++.|+.+++.+-.. ...+..-...++++
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~--D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVG--DDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhc--ccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 23456667667666554211 11222 2334444455566666688899999988854 44555556678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHH-HHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCCCCCC
Q 012413 387 ALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGL-LVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPSSS 463 (464)
Q Consensus 387 ~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~-i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~~~~~ 463 (464)
.++.++.+++-.++..++|+|+.++.+.++.+.- ....+.++.|+.=|+ +.|++-.+++|++-.|+++-.+...++
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~ 486 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSN 486 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999876643321 111233333333332 468999999999999997655554443
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.6e-06 Score=55.26 Aligned_cols=41 Identities=34% Similarity=0.409 Sum_probs=38.3
Q ss_pred CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 372 IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 372 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
+++++..+++.|+++.|+++|++.++.++..|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36789999999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3e-05 Score=73.57 Aligned_cols=181 Identities=17% Similarity=0.066 Sum_probs=118.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhccC--chhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-chHHHHHhcC
Q 012413 186 LQSSSVAIKRSAAAKLRLLAKNR--SDNRVLIGE--SGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNKTLITNAG 260 (464)
Q Consensus 186 L~s~~~~vr~~A~~~L~~La~~~--~~~r~~i~~--~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-~~~~~i~~~g 260 (464)
..+.++..|..|+..|..+..++ ......+.+ ...+..+...+.+....+...|+.++..++..- ..-... -..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 36788999999999999998886 233333332 256677888888878889999999999998752 222222 234
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-Cc---chHH
Q 012413 261 AIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LK---QNKE 336 (464)
Q Consensus 261 ~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~---~~~~ 336 (464)
.+|.|++.+.++...++..|..+|..+..+-.....+ .++.+...+.+.++.+|..++..|..+.. .+ ....
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 7899999999999999999999999987653311111 15666677788899999999999999877 33 1111
Q ss_pred -HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 337 -RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 337 -~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
...-...++.+...+.+.++++|..|-.++..+..
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 11113477889999999999999999999998863
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00057 Score=73.45 Aligned_cols=86 Identities=19% Similarity=0.054 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLI 256 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i 256 (464)
+.+...+.|++.++.+|++|+.|+..+-...|+.-+. .++.-.++|.+.++.|...++..+..++.. ++.-..+
T Consensus 143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f 217 (866)
T KOG1062|consen 143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF 217 (866)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH
Confidence 3333344445555555555555555554444433222 334444555555555555555555555542 3333333
Q ss_pred HhcCcHHHHHHHHc
Q 012413 257 TNAGAIKSLVYVLK 270 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~ 270 (464)
-+ .++.|+..|+
T Consensus 218 r~--l~~~lV~iLk 229 (866)
T KOG1062|consen 218 RD--LVPSLVKILK 229 (866)
T ss_pred HH--HHHHHHHHHH
Confidence 22 4444444443
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00062 Score=74.76 Aligned_cols=258 Identities=15% Similarity=0.161 Sum_probs=177.6
Q ss_pred hHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 176 QPTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
.+..+.++..|. ..++.++.-|+.++..+..+ .++-..+...|.+-.|+.+|.+ -|..|..++.+|..|+.+++...
T Consensus 1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~k 1847 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGK 1847 (2235)
T ss_pred hcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHH
Confidence 344555555554 46778899999998777766 7777888889988889998865 57889999999999999988888
Q ss_pred HHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhcccccc--hhhh--------------hc------------------
Q 012413 255 LITNAGAIKSLVYVL-KTGTETSKQNAACALMSLALIEEN--KSSI--------------GA------------------ 299 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~--~~~i--------------~~------------------ 299 (464)
.-.+.|++..+..++ .+.+...|.+++..++.|..++-. |-.| .+
T Consensus 1848 eA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPEL 1927 (2235)
T KOG1789|consen 1848 EALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPEL 1927 (2235)
T ss_pred HHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCccc
Confidence 878888877776655 455677888888888877643110 0000 00
Q ss_pred --------------------------------------------------cC------------------------ChHH
Q 012413 300 --------------------------------------------------CG------------------------AIPP 305 (464)
Q Consensus 300 --------------------------------------------------~g------------------------~i~~ 305 (464)
-| .+..
T Consensus 1928 iWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek 2007 (2235)
T KOG1789|consen 1928 IWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEK 2007 (2235)
T ss_pred ccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHH
Confidence 00 0111
Q ss_pred HHHHhhcCCh--hhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhc
Q 012413 306 LVSLLIYGSS--RGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEE 382 (464)
Q Consensus 306 Li~lL~~~~~--~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~ 382 (464)
+.+++..+++ ........++-.|.+ ++...+++---|.+|.++..+...+..+-..|+.+|..|+.+.-+..++...
T Consensus 2008 ~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l 2087 (2235)
T KOG1789|consen 2008 VLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQL 2087 (2235)
T ss_pred HHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhcc
Confidence 1222222211 111222223333433 5555666666889999999998777777788999999999999999999998
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH-HhHHHHHHcCChHHHHHhhhc
Q 012413 383 NGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV-KNRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 383 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s 436 (464)
.++..++..|+..-.. .-.|+.+|-.+..... +........|.++.|+.+|..
T Consensus 2088 ~~i~~~m~~mkK~~~~-~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2088 PCIDGIMKSMKKQPSL-MGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred ccchhhHHHHHhcchH-HHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 8888899988864333 3378888877775432 233445668999999999976
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00027 Score=66.94 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
.++.+.+...+.+...+...+.+|+. .....+++.|+..|.+ ..|-+|..|+.+|+.+. .
T Consensus 37 ~i~~i~ka~~d~s~llkhe~ay~LgQ-----------~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~------ 98 (289)
T KOG0567|consen 37 AIKAITKAFIDDSALLKHELAYVLGQ-----------MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D------ 98 (289)
T ss_pred HHHHHHHhcccchhhhccchhhhhhh-----------hccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c------
Confidence 45555556555555555566666632 3345788888887765 56778888888888776 2
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLA 288 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls 288 (464)
.+.++.|-+..+++-..++..+..++..+-
T Consensus 99 ---~~~~~~l~k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 99 ---PESLEILTKYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred ---hhhHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 234556666666667777777777776664
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0007 Score=71.08 Aligned_cols=270 Identities=14% Similarity=0.095 Sum_probs=175.2
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHH-HHHHHHHhcCCCchHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEH-SVTALLNLSLHENNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~-A~~aL~~La~~~~~~~ 254 (464)
....+.+.+++...+...+..++..+..+.++... ..+.+.+.+..|-..+++.....++. +.-+......+-.
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg--- 207 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG--- 207 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---
Confidence 34666677888888888899999999888887433 44556788888888888865554443 2222222221111
Q ss_pred HHHhcCcH---HHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 255 LITNAGAI---KSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 255 ~i~~~g~i---~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
...+.+.+ |.++....+....+|..|..+...+... +...- ...+|.++.-+.......+..++..|+.++.
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11233444 4444455566788998888888776443 11100 1124555544444477889999999999999
Q ss_pred CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC---Hhh--------------------------HHHHHh
Q 012413 331 LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI---AEG--------------------------REAIVE 381 (464)
Q Consensus 331 ~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~---~~~--------------------------~~~i~~ 381 (464)
+.+.+-......++|.|.+.|.+.++++++.+..+|..++.. ++. +..++.
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~ 363 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVA 363 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence 887777777778999999999999999999999999998742 210 111111
Q ss_pred ---cCcHHHHHHHH----hcCCHHHHHHHHHHHHHHhhcCHHhHH--HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 382 ---ENGIAALVEAI----EDGSVKGKEFAVLTLLQLCAESVKNRG--LLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 382 ---~g~i~~Lv~lL----~~~~~~v~~~A~~aL~~L~~~~~~~~~--~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
+-.+..++.++ .+.+...+..++.+++|+|.--++.+. .+. -..+|.|-..+.+..|++|.-++.||+.+
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 11223333333 345777889999999999975422111 111 13456666666667899999999999766
Q ss_pred hcC
Q 012413 453 REP 455 (464)
Q Consensus 453 ~~~ 455 (464)
.+-
T Consensus 443 ~e~ 445 (569)
T KOG1242|consen 443 LER 445 (569)
T ss_pred HHH
Confidence 553
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00079 Score=71.56 Aligned_cols=184 Identities=14% Similarity=0.132 Sum_probs=126.8
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~ 254 (464)
.++-..++.+|++.-+.+|..|+-.|..+.-..|+. + ..++|.|..-|+++||.|+..|+.++|.|++ +|.+--
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---l--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---L--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---H--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 456677788999999999999999998887664432 2 2578999999999999999999999999997 454321
Q ss_pred --------HHH-------------------------hcCcHHHHHHHHccCCH-HHHHHHHHHHHH--hccc-ccchhhh
Q 012413 255 --------LIT-------------------------NAGAIKSLVYVLKTGTE-TSKQNAACALMS--LALI-EENKSSI 297 (464)
Q Consensus 255 --------~i~-------------------------~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~~--Ls~~-~~~~~~i 297 (464)
.++ ....+++|..++.+... .+...+..++.. |+.. +++-..
T Consensus 218 ~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~as- 296 (877)
T KOG1059|consen 218 QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSAS- 296 (877)
T ss_pred cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHH-
Confidence 111 11235555555555433 344444444432 2221 111110
Q ss_pred hccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 298 GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 298 ~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
-.-++..|--++.+.|+.++.-.+-+++.+.. |+...+. --..++.+|.+.++.++-.|+..|..|..
T Consensus 297 -iqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 297 -IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred -HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 01245667777888899999999999999988 5554332 23567889999999999999999998875
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00015 Score=75.54 Aligned_cols=271 Identities=14% Similarity=0.027 Sum_probs=175.8
Q ss_pred CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhH--HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 012413 173 EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNR--VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE 250 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r--~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~ 250 (464)
..+...|..+++.|++..+++|..|+...+.++.--..+- +.+...|. .|..-|....|++.-..+.|++.+....
T Consensus 600 p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 600 PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 3456788889999999999999999998888764311110 12222332 3556677789999988888888886532
Q ss_pred chHH-HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHH
Q 012413 251 NNKT-LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKL 328 (464)
Q Consensus 251 ~~~~-~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL 328 (464)
..+. .=--.|.+|.|...|+.....+..+....+..++... +....--....-=.|+++|++.+.++|++|...++.+
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 2211 0013578999999999999999999999999998873 3211111123334688999999999999999999988
Q ss_pred hcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 012413 329 CSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLL 408 (464)
Q Consensus 329 ~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 408 (464)
++.-. -..++..|+.-|+..+...+.-..-+++-.+.. ..--.++|.|+.=-..++..+|.-.+.+++
T Consensus 758 s~aiG------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~------cgpfsVlP~lm~dY~TPe~nVQnGvLkam~ 825 (975)
T COG5181 758 SRAIG------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEY------CGPFSVLPTLMSDYETPEANVQNGVLKAMC 825 (975)
T ss_pred HhhcC------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh------cCchhhHHHHHhcccCchhHHHHhHHHHHH
Confidence 66211 122445555555554433333333333333210 001235566655555677888888888777
Q ss_pred HHhhcC-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCC
Q 012413 409 QLCAES-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 409 ~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~ 459 (464)
.+...- ...++.+ .-..|.|-+.|.+.++--|.-|...++.|+=+.++.
T Consensus 826 fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt 875 (975)
T COG5181 826 FMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT 875 (975)
T ss_pred HHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc
Confidence 765431 1222222 234677777888889999999999999988665543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00026 Score=77.72 Aligned_cols=224 Identities=15% Similarity=0.081 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh-cCCCchHHHHHhcCcHHHHHHHHcc-
Q 012413 194 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNL-SLHENNKTLITNAGAIKSLVYVLKT- 271 (464)
Q Consensus 194 r~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~L-a~~~~~~~~i~~~g~i~~Lv~lL~~- 271 (464)
|..|+..|..+-.-.+=.-..-..-|..|.+++||+++-.+++..-+-+=..| +-++..+..+++.++-..++..|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 44566666555433222223334569999999999999999887766666565 4466677777877777777777766
Q ss_pred C--CHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHH
Q 012413 272 G--TETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRP 346 (464)
Q Consensus 272 ~--~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~ 346 (464)
+ +++-|..|+.+|..+..+ .-++......+.+...+..|.++ .+-++.+.+-+|+.|-. .++.+-.-++.++.+.
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 2 568899999999999877 56677777888888888888885 67789999999999988 5666666678899999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhC-----CHhhHHHH-----------HhcCcH----HHHHHHHhcCCHHHHHHHHHH
Q 012413 347 LVGMLAGQGEGMAEKAMVVLSLLAG-----IAEGREAI-----------VEENGI----AALVEAIEDGSVKGKEFAVLT 406 (464)
Q Consensus 347 Lv~lL~~~~~~v~~~A~~aL~nLa~-----~~~~~~~i-----------~~~g~i----~~Lv~lL~~~~~~v~~~A~~a 406 (464)
|+.+|.++-++|+..|.-+|+.+-+ +++....+ ..+..+ ..++.++++.++-++...+.+
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999999999999999985 34332222 112222 378888899999999999999
Q ss_pred HHHHhhcCHHh
Q 012413 407 LLQLCAESVKN 417 (464)
Q Consensus 407 L~~L~~~~~~~ 417 (464)
|..++.....+
T Consensus 727 ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 727 LSHFVVGYVSH 737 (1387)
T ss_pred HHHHHHhhHHH
Confidence 99888765443
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00031 Score=68.14 Aligned_cols=228 Identities=14% Similarity=0.110 Sum_probs=163.8
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHh-cCcHHHHHHHHcc--CCHHHHHHHHHHHHHhcccccchhhhhc-cC
Q 012413 226 PLLKCSDPWTQEHSVTALLNLSLHENNKTLITN-AGAIKSLVYVLKT--GTETSKQNAACALMSLALIEENKSSIGA-CG 301 (464)
Q Consensus 226 ~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~-~g~i~~Lv~lL~~--~~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~g 301 (464)
++++.=++-.+..|..+|.++...++.|..+.. ...-..++.+++. ++..++.+.+.+++.++..++..+.|-+ ..
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 445555666888999999999998888876654 4455677888876 5789999999999999998877655544 45
Q ss_pred ChHHHHHHhhcC-ChhhHHHHHHHHHHHhc-Cc-chHHHHHHcCCHHHHHHhhc-CC--CHHHHHHHHHH----------
Q 012413 302 AIPPLVSLLIYG-SSRGKKDALTTLYKLCS-LK-QNKERAVSAGAVRPLVGMLA-GQ--GEGMAEKAMVV---------- 365 (464)
Q Consensus 302 ~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~-~~-~~~~~iv~~g~v~~Lv~lL~-~~--~~~v~~~A~~a---------- 365 (464)
.|.-|+++.+.. ...|.+-+++++.|++. .+ .....+.-.|-+..-++.|. .. +++++...-.+
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 677788888765 66788999999999988 33 33344444554444455543 22 33332221111
Q ss_pred -------HHHH-----hCC---------HhhHHHHHhcC--cHHHHHHHHhcCCHH-HHHHHHHHHHHHhhcCHHhHHHH
Q 012413 366 -------LSLL-----AGI---------AEGREAIVEEN--GIAALVEAIEDGSVK-GKEFAVLTLLQLCAESVKNRGLL 421 (464)
Q Consensus 366 -------L~nL-----a~~---------~~~~~~i~~~g--~i~~Lv~lL~~~~~~-v~~~A~~aL~~L~~~~~~~~~~i 421 (464)
+..| +-+ ..+...+.+.+ .+..|.++++...+. .-..|+.-++++....|+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 1111 101 14566666544 689999999976554 56678888999999999999999
Q ss_pred HHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 422 VREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 422 ~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
..-|+=+.+++++.+++++||..|..|+..+-
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999998764
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00023 Score=75.64 Aligned_cols=150 Identities=11% Similarity=0.075 Sum_probs=107.1
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcC-CHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHH-H
Q 012413 303 IPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAG-AVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAI-V 380 (464)
Q Consensus 303 i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g-~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i-~ 380 (464)
+..++..|++.++.+|.+|+.+++.|+..-..+...-..| .--.|.+.|....+++.-..+++|..+...-..-+.. =
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pP 880 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP 880 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC
Confidence 4556678889999999999999999988544332221111 1235778888888888666666665554211000000 0
Q ss_pred hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH---hHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 381 EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK---NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 381 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~---~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
-.+.+|.|.-.|++...+++++++..++.+|..+++ .|..|+ +---|+++|++.+..+|+.|...++.|++.
T Consensus 881 i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 881 IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 146889999999999999999999999999987664 233332 344588899999999999999999999863
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.6e-05 Score=70.13 Aligned_cols=184 Identities=15% Similarity=0.048 Sum_probs=118.8
Q ss_pred cCCCHHHHHHHHHHHHHhcCCC---chHHHHHh--cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCCh
Q 012413 229 KCSDPWTQEHSVTALLNLSLHE---NNKTLITN--AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAI 303 (464)
Q Consensus 229 ~~~~~~v~~~A~~aL~~La~~~---~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i 303 (464)
.+.+.+.+..|+.-|..+.... +....+.+ ...+..++..+.+....+...|+.++..|+..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4577888999999998887633 33333332 256677888888888899999999999998763322211224468
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHh-hHHHHH--
Q 012413 304 PPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE-GREAIV-- 380 (464)
Q Consensus 304 ~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~-- 380 (464)
|.|++.+.+....++..|..+|..++.+-.....+ .++.+...+.+.++.++..++..|..+...-. ....+.
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 99999999999999999999999998854411111 14567777888899999999999999874322 111111
Q ss_pred --hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 381 --EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 381 --~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
-...++.+..++.+.++++|..|-.+++.+...-++
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 145788899999999999999999999999765443
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00036 Score=74.84 Aligned_cols=264 Identities=18% Similarity=0.143 Sum_probs=160.8
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCch-HH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~-~~ 254 (464)
......|.+++++.++.+|..++.++..+-..+. +.+.+.|.++.|-.++.+++|.|..+|+.+|..+.....+ -.
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 3566777889999999999999999888765543 5666889999999999999999999999999999764322 11
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc-chhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE-NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
.......+..++..|..-++--+...+.++.+=.-.+. ... ..+..+...|.+.++.+...+..++.++...-.
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence 11112234444455544444444444444433221111 111 224556666777788888888888888877433
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCH-------------------------hhHHHHHhcC----
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIA-------------------------EGREAIVEEN---- 383 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~-------------------------~~~~~i~~~g---- 383 (464)
.....+....-++|+.++.... .++.-++.=+.-+- ..+ +....+....
T Consensus 272 ~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q 350 (734)
T KOG1061|consen 272 QVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ 350 (734)
T ss_pred HHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence 3333333446667777776654 43333322222111 000 1111111111
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.+..|.++-.+-+.+.-..+++|+++++..-++. ++.+..|+++++..-..+...+...++.|-+
T Consensus 351 vl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 3344444444568888999999999998643221 6788888888886666555555555665544
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=76.20 Aligned_cols=217 Identities=18% Similarity=0.147 Sum_probs=150.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CC------
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HE------ 250 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~------ 250 (464)
++..++....+.+..||..|+..|..|... .+..+ -.....++++.+++..||..|+.++.-.+. .+
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSK-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccc-ccccH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 444466677778888888888888777663 22222 245667889999999999999777665544 21
Q ss_pred chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc--------------------------------------
Q 012413 251 NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE-------------------------------------- 292 (464)
Q Consensus 251 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~-------------------------------------- 292 (464)
.....+.+ .+...+...+.+.+-.+|..|+.+|+.+-..++
T Consensus 273 ~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 273 SEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 11122222 367777788888888888888777765432110
Q ss_pred -------------chhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHH
Q 012413 293 -------------NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMA 359 (464)
Q Consensus 293 -------------~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~ 359 (464)
....|+..|+-..++.=|.++--+||++|...++.|+.+... ....++..|+.++.++...|+
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVR 427 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHH
Confidence 011233445556677777777788999999999999885432 122267889999999999999
Q ss_pred HHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 012413 360 EKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQL 410 (464)
Q Consensus 360 ~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L 410 (464)
..|..+|..|+.+- .+++.-++.++..|.+.+.++|+..-..|++.
T Consensus 428 L~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 428 LKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999998752 23345577888899999999998877777664
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0011 Score=69.35 Aligned_cols=258 Identities=14% Similarity=0.116 Sum_probs=172.1
Q ss_pred HHHHHHHhccCchhHHHHHhcCChHHHHHhh----------cCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHH
Q 012413 198 AAKLRLLAKNRSDNRVLIGESGAVPALVPLL----------KCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLV 266 (464)
Q Consensus 198 ~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL----------~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv 266 (464)
+.+|+-++++ +.....+....++..|+.+- ...++.+...|+.+|+|+..+ +..|+.+++.|+.+.++
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4455555555 33444444445555555544 346889999999999999885 68888999999999999
Q ss_pred HHHccC-----CHHHHHHHHHHHHHhccc-ccchhhhhc-cCChHHHHHHhhcC-----------------ChhhHHHHH
Q 012413 267 YVLKTG-----TETSKQNAACALMSLALI-EENKSSIGA-CGAIPPLVSLLIYG-----------------SSRGKKDAL 322 (464)
Q Consensus 267 ~lL~~~-----~~~v~~~a~~aL~~Ls~~-~~~~~~i~~-~g~i~~Li~lL~~~-----------------~~~v~~~A~ 322 (464)
..|+.. +.++.-.....|.-++.. .+.+..+++ .+++..++..|... +......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999887 788888888888887764 456666655 57788777766421 223456788
Q ss_pred HHHHHHhcCcchHHHHHHcCCHHHHHHhhcC---------CCHHHHHHHHHHHHHHhC-CHhh-------HHHH----Hh
Q 012413 323 TTLYKLCSLKQNKERAVSAGAVRPLVGMLAG---------QGEGMAEKAMVVLSLLAG-IAEG-------REAI----VE 381 (464)
Q Consensus 323 ~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~---------~~~~v~~~A~~aL~nLa~-~~~~-------~~~i----~~ 381 (464)
.++.|++.+-.....-...+.++.|+.++.. +......++..+|.|+-- .... ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 8999998743322111122344444444321 124557888888888831 1111 1111 11
Q ss_pred cCcHHHHHHHHhc-----C---CHHHHHHHHHHHHHHhhcCHHhHHHHHH----------------cCChHHHHHhhhcC
Q 012413 382 ENGIAALVEAIED-----G---SVKGKEFAVLTLLQLCAESVKNRGLLVR----------------EGGIPPLVALSQTG 437 (464)
Q Consensus 382 ~g~i~~Lv~lL~~-----~---~~~v~~~A~~aL~~L~~~~~~~~~~i~~----------------~g~i~~Lv~lL~s~ 437 (464)
...+..|+++|.. . -...-..-+.+|..++..+...|..+.. ...-..|++++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2367788888763 1 1346667888888888877777766654 35667899999998
Q ss_pred CHHHHHHHHHHHHHhhcCC
Q 012413 438 SVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 438 ~~~v~~~A~~aL~~L~~~~ 456 (464)
.+.+|..++..|-.|++..
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 8999999999998888643
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00062 Score=74.91 Aligned_cols=219 Identities=13% Similarity=0.070 Sum_probs=160.7
Q ss_pred HHHHHHHHHHhcC-CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHH-hcccccchhhhhccCChHHHHHHhhc-
Q 012413 236 QEHSVTALLNLSL-HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMS-LALIEENKSSIGACGAIPPLVSLLIY- 312 (464)
Q Consensus 236 ~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~-Ls~~~~~~~~i~~~g~i~~Li~lL~~- 312 (464)
|..|+..|+..-. .+=.-..-..-|..|.+++||++.-.++|-.-+.+=.. |+.++..+..+++.++-...++.|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 3455555555432 12122233467999999999999999998765554444 55666667777776666666667765
Q ss_pred C--ChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHH
Q 012413 313 G--SSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAA 387 (464)
Q Consensus 313 ~--~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~ 387 (464)
. +++-|.-|+.+|+.++. .+-+++.-.+.+.+..-+..|.++ .+-.+.-++-+|+.|= .+++.|=.=.+.++.+.
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 2 45788889999999999 567888888899999999999885 4667888999999997 45666666667899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcC----HHhHHH-----------HHHcCCh----HHHHHhhhcCCHHHHHHHHHH
Q 012413 388 LVEAIEDGSVKGKEFAVLTLLQLCAES----VKNRGL-----------LVREGGI----PPLVALSQTGSVRAKHKAETL 448 (464)
Q Consensus 388 Lv~lL~~~~~~v~~~A~~aL~~L~~~~----~~~~~~-----------i~~~g~i----~~Lv~lL~s~~~~v~~~A~~a 448 (464)
|..+|.++.++||..|+.||+.+.... ++.... +.-+..+ ..|+.++..+.+-++...+.+
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 999999999999999999999998742 221111 1112222 378888889999999999988
Q ss_pred HHHhhc
Q 012413 449 LGYLRE 454 (464)
Q Consensus 449 L~~L~~ 454 (464)
|..+.-
T Consensus 727 ls~~~~ 732 (1387)
T KOG1517|consen 727 LSHFVV 732 (1387)
T ss_pred HHHHHH
Confidence 887753
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0094 Score=60.43 Aligned_cols=236 Identities=18% Similarity=0.116 Sum_probs=174.2
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-----c----hhHHHHHhcCChHHHHHhhcCCCHHH------HHHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNR-----S----DNRVLIGESGAVPALVPLLKCSDPWT------QEHSV 240 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~-----~----~~r~~i~~~g~i~~Ll~lL~~~~~~v------~~~A~ 240 (464)
...|+.|+.+|.+.+.++-...+..|..++..+ . ..-..+++.++++.|++.++.-+..+ ...+.
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 357888899999999999999999999998542 1 34566778899999999987644333 45666
Q ss_pred HHHHHhcC-CCchHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhh---cC
Q 012413 241 TALLNLSL-HENNKTLITNAGAIKSLVYVLKTG--TETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLI---YG 313 (464)
Q Consensus 241 ~aL~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~---~~ 313 (464)
..+-|+.. .++....+++.|.+.-|++-+... -..-+.+|..+|.-+-.+. +++.......+|..+++-+. ..
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 77777766 567778888888888777755443 3467788888888887774 58888888889999887664 22
Q ss_pred C------hhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH---hhHHHHHhcCc
Q 012413 314 S------SRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA---EGREAIVEENG 384 (464)
Q Consensus 314 ~------~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~---~~~~~i~~~g~ 384 (464)
+ .+.-.+...+|+.+...++|+..++...+++...-+++. ....+.-++.+|-....++ +++..+++.+|
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 2 246678888999999999999999999898877777765 4555778889998888544 56778888777
Q ss_pred HHHHHHHHh-cC---------CHHHHHHHHHHHHHHhh
Q 012413 385 IAALVEAIE-DG---------SVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 385 i~~Lv~lL~-~~---------~~~v~~~A~~aL~~L~~ 412 (464)
...+..+.- .+ ....-+..+..|+.+-.
T Consensus 363 LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 363 LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 776665543 22 23445566666666654
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0027 Score=66.51 Aligned_cols=228 Identities=17% Similarity=0.133 Sum_probs=161.2
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCC-----CHHHHHHHHHHHHHhcC-CCchHHHHHh-c
Q 012413 187 QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS-----DPWTQEHSVTALLNLSL-HENNKTLITN-A 259 (464)
Q Consensus 187 ~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~-----~~~v~~~A~~aL~~La~-~~~~~~~i~~-~ 259 (464)
...++.+...|++||.|+...++..|+.+.+.|..+.++..|+.. +.++.....+.|.-++. .++.+..+++ .
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 457889999999999999999999999999999999999999886 78899999999888876 4566666655 6
Q ss_pred CcHHHHHHHHcc-----------------CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC---------
Q 012413 260 GAIKSLVYVLKT-----------------GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG--------- 313 (464)
Q Consensus 260 g~i~~Lv~lL~~-----------------~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~--------- 313 (464)
+++..|+..|.. .+......++..+.|+..+......-.+...++.|+.+|..-
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 888888876642 134567788999999987743322223455677777665421
Q ss_pred ChhhHHHHHHHHHHHhcCc-ch-------HHH----HHHcCCHHHHHHhhcC----C----CHHHHHHHHHHHHHHhCC-
Q 012413 314 SSRGKKDALTTLYKLCSLK-QN-------KER----AVSAGAVRPLVGMLAG----Q----GEGMAEKAMVVLSLLAGI- 372 (464)
Q Consensus 314 ~~~v~~~A~~aL~nL~~~~-~~-------~~~----iv~~g~v~~Lv~lL~~----~----~~~v~~~A~~aL~nLa~~- 372 (464)
.......+..+|.|+-... .. ... ......+..|+.+|.. . -.+.....+.+|..++..
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 3346777888888773211 10 000 1123356667776642 1 124466677888888854
Q ss_pred HhhHHHHHh----------------cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 373 AEGREAIVE----------------ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 373 ~~~~~~i~~----------------~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
...|+.+.. ...-..|++++.+..+.++..++..|+.||..+
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 444555443 235788999999988999999999999999654
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00023 Score=73.31 Aligned_cols=138 Identities=10% Similarity=0.064 Sum_probs=117.3
Q ss_pred HHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCH
Q 012413 279 NAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGE 356 (464)
Q Consensus 279 ~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~ 356 (464)
.++..|..++.. .-.|..+.+....+.|+++|.+++..+.--+...++|+.. ....+..|++.|.+..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 445555566554 4567778888899999999999999999999999999988 67788899999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC--HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 357 GMAEKAMVVLSLLAGI--AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 357 ~v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
.++.+..|+|+++..+ ..-+-.++..-++..++.+..++.-.+++.+...|.|+++.+..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~k 549 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSK 549 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccccc
Confidence 9999999999999944 33455677788899999999999999999999999999985433
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0072 Score=66.80 Aligned_cols=263 Identities=17% Similarity=0.183 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHh----cCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHH
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGE----SGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLV 266 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~----~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv 266 (464)
.-..-++.+|.|+...+++....+.. -|-.+.+...|.. .++.++.-|+.++..+..+.+.-..++..|.+..|+
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence 34456899999999988877655443 3778888888876 788999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHh-hcCChhhHHHHHHHHHHHhcCcc----hH------
Q 012413 267 YVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL-IYGSSRGKKDALTTLYKLCSLKQ----NK------ 335 (464)
Q Consensus 267 ~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL-~~~~~~v~~~A~~aL~nL~~~~~----~~------ 335 (464)
.+|.+. +..|..++.+|..|+..++......+.|++..+..++ .+.+++.|.+|+..|+.|...+- -.
T Consensus 1820 ~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 999664 6689999999999999988877778889888888765 45688999999999999987542 11
Q ss_pred --HHHHH--cCCHHHHHHhhcCC--CH------HHHHHHHHHHHHHhCC--------H----------------------
Q 012413 336 --ERAVS--AGAVRPLVGMLAGQ--GE------GMAEKAMVVLSLLAGI--------A---------------------- 373 (464)
Q Consensus 336 --~~iv~--~g~v~~Lv~lL~~~--~~------~v~~~A~~aL~nLa~~--------~---------------------- 373 (464)
+.+++ .++.+..|.++... .+ ..+...-..+..|+.. +
T Consensus 1899 LP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aV 1978 (2235)
T KOG1789|consen 1899 LPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAV 1978 (2235)
T ss_pred chHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCccc
Confidence 11111 22335666666432 22 2244444555555420 0
Q ss_pred ---hhHHHHHh------------cCcHHHHHHHHhcCCH--HHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc
Q 012413 374 ---EGREAIVE------------ENGIAALVEAIEDGSV--KGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 374 ---~~~~~i~~------------~g~i~~Lv~lL~~~~~--~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s 436 (464)
-.|..+.. .|.++.++++|....+ ..-..-..++-.|.+..|...+.+-..|-+|.++..+..
T Consensus 1979 GG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~ 2058 (2235)
T KOG1789|consen 1979 GGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCL 2058 (2235)
T ss_pred chhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHh
Confidence 11222222 2445666777764332 223333344455555667777777778999999999877
Q ss_pred CCHHHHHHHHHHHHHhhcC
Q 012413 437 GSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 437 ~~~~v~~~A~~aL~~L~~~ 455 (464)
.+..+-..|.+.|..|+++
T Consensus 2059 ~n~s~P~SaiRVlH~Lsen 2077 (2235)
T KOG1789|consen 2059 QNTSAPRSAIRVLHELSEN 2077 (2235)
T ss_pred cCCcCcHHHHHHHHHHhhc
Confidence 7666667777777777654
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0034 Score=65.38 Aligned_cols=274 Identities=14% Similarity=0.128 Sum_probs=172.9
Q ss_pred CCchHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhccCchhHHHHHhcCCh-HH-HHHhhcC-CCHHHHHHHHHHHHH-hc
Q 012413 173 EDLQPTVKICIDGLQSSS-VAIKRSAAAKLRLLAKNRSDNRVLIGESGAV-PA-LVPLLKC-SDPWTQEHSVTALLN-LS 247 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~-~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i-~~-Ll~lL~~-~~~~v~~~A~~aL~~-La 247 (464)
+.|++.++.++.....+. ..++..++.++++.+..... ...+...+++ -. ...-++. .+..+|..|+.+|.+ +-
T Consensus 129 ~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~ 207 (858)
T COG5215 129 SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM 207 (858)
T ss_pred ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 567888888888877644 56788899999888866333 2333333332 22 2334444 677899999999988 32
Q ss_pred C------CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHH
Q 012413 248 L------HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKD 320 (464)
Q Consensus 248 ~------~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~ 320 (464)
. .++.+.. .+...++.-+.++.+++..|.++|..|..- -+.-+.+.+.-......+.+++.+.++...
T Consensus 208 fv~~nf~~E~erNy-----~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~q 282 (858)
T COG5215 208 FVQGNFCYEEERNY-----FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQ 282 (858)
T ss_pred HHHHhhcchhhhch-----hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 1 1222222 334456667788999999999999887543 233334444444455566778889999999
Q ss_pred HHHHHHHHhcCc-chH----------------HHHHHcCCHHHHHHhhcCCC----H---HHHHHHHHHHHHHhCCHhhH
Q 012413 321 ALTTLYKLCSLK-QNK----------------ERAVSAGAVRPLVGMLAGQG----E---GMAEKAMVVLSLLAGIAEGR 376 (464)
Q Consensus 321 A~~aL~nL~~~~-~~~----------------~~iv~~g~v~~Lv~lL~~~~----~---~v~~~A~~aL~nLa~~~~~~ 376 (464)
|...-..+|..+ +.- ..-.-+.++|.|+.+|...+ . .+...|..||--.+... .
T Consensus 283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~--g 360 (858)
T COG5215 283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK--G 360 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh--h
Confidence 988766666632 110 00012447899999996422 1 23445555555444211 0
Q ss_pred HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 377 EAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
..|.+. +..-+-+-+++++-.-++.|+.+++.+.....+.+..-.-..++|.+...+.++.--++..++|+++.|+++
T Consensus 361 d~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 361 DKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 111111 222223344567788899999999999876544444333356788888888877779999999999999875
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00011 Score=53.31 Aligned_cols=55 Identities=20% Similarity=0.138 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 012413 233 PWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSL 287 (464)
Q Consensus 233 ~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L 287 (464)
|.+|..|+++|++++........-....+++.|+.+|+++++.||..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999987654444445567999999999999999999999999875
|
... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0032 Score=70.49 Aligned_cols=265 Identities=15% Similarity=0.117 Sum_probs=172.3
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC----Cc
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH----EN 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~----~~ 251 (464)
...|..++..++. ...|.+|+..|..++..-.. +.. =..++|.++.+++++.++||..|+.+|..+... +.
T Consensus 424 vs~lts~IR~lk~--~~tK~~ALeLl~~lS~~i~d--e~~-LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKT--IQTKLAALELLQELSTYIDD--EVK-LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhc--chhHHHHHHHHHHHhhhcch--HHH-HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 4566666666665 45677999999998866332 111 236899999999999999999999999987432 12
Q ss_pred hHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccc----cchhhhhcc------------------------CC
Q 012413 252 NKTLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIE----ENKSSIGAC------------------------GA 302 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~----~~~~~i~~~------------------------g~ 302 (464)
.-..+.-.-.+|.|-.++.+ ....+|..-+..|..||... +..+.+... ..
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 21233333477888888888 45566766666666665320 111110000 02
Q ss_pred hH-HHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHH----cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHH
Q 012413 303 IP-PLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVS----AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGRE 377 (464)
Q Consensus 303 i~-~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~----~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 377 (464)
+. ....+|.++.+-|++..+..|.-||.. |.+ .=.++.|+.+|.+.+..+|..-..-|..++.+-.-
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~-- 650 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW-- 650 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--
Confidence 22 233566667778888888888888761 222 12568899999988777766555555544432111
Q ss_pred HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 378 AIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 378 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.=++++.+|.|.+-|.+..+.|...|+++|.-|+...--.+..+.+ .++...-+|-.++.-+|+.++..+..+.++
T Consensus 651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 1134677899999999999999999999999998654322333322 344444556678889999998888776653
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0049 Score=68.41 Aligned_cols=258 Identities=14% Similarity=0.132 Sum_probs=160.2
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCch
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENN 252 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~ 252 (464)
.++..++.|+..|++.+..||..|++.++.++...|. .+ ...+|...+.++.- +++..-..|+.+|+.|+...-.
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---EL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc
Confidence 4567889999999999999999999999999988762 22 23567777776554 3456667999999999864211
Q ss_pred HHHHHhcCcHHHHHHHHccC--------CHHHHHHHHHHHHHhcccccch--hhhhccCChHHHHHHhhcCChhhHHHHH
Q 012413 253 KTLITNAGAIKSLVYVLKTG--------TETSKQNAACALMSLALIEENK--SSIGACGAIPPLVSLLIYGSSRGKKDAL 322 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~~--------~~~v~~~a~~aL~~Ls~~~~~~--~~i~~~g~i~~Li~lL~~~~~~v~~~A~ 322 (464)
..... ..++|.+++.|.-+ ...+|..||.++|.++...+.. ..+...-+-..|+..+-+....+|++|.
T Consensus 414 lps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 414 LPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred chHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 11111 12677777777543 3568999999999887652211 1122211222333444566778999999
Q ss_pred HHHHHHhcCcchHHHHHHcCCHHHHHHhh---cCCCHHHHHHHHHHHH-HHhCCHhhHHHHHhcCcHHHHHHH-HhcCCH
Q 012413 323 TTLYKLCSLKQNKERAVSAGAVRPLVGML---AGQGEGMAEKAMVVLS-LLAGIAEGREAIVEENGIAALVEA-IEDGSV 397 (464)
Q Consensus 323 ~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL---~~~~~~v~~~A~~aL~-nLa~~~~~~~~i~~~g~i~~Lv~l-L~~~~~ 397 (464)
.|+..... +.|-+|.=+.++ +...-..+.++-..|. .++.++..+.-+++ .|+.. +.+-+.
T Consensus 493 AAlqE~VG---------R~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~ 558 (1133)
T KOG1943|consen 493 AALQENVG---------RQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDV 558 (1133)
T ss_pred HHHHHHhc---------cCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccH
Confidence 88876533 222222111222 1111222344333332 23344444444433 22222 446789
Q ss_pred HHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 398 KGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 398 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.+|+.++++|.+|....++ ....+.+++|++..-+.+...+..+..+.+.+..
T Consensus 559 ~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 9999999999998865443 3345789999999999988888877777666554
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00041 Score=73.04 Aligned_cols=223 Identities=17% Similarity=0.080 Sum_probs=146.2
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHH---Hhcccc---c
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALM---SLALIE---E 292 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~---~Ls~~~---~ 292 (464)
+++.-|+.+..+.|+.|+..|+.+|..|...-...+. .....++++.+.+..+|..|...++ |..-.+ +
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 3344477777788888999999988887753232222 4566789999999999998866554 444211 1
Q ss_pred chhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHH--
Q 012413 293 NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLL-- 369 (464)
Q Consensus 293 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nL-- 369 (464)
+-..=....++..+...+.+.+..+|-.|+.+|+.+.. +.+...+..+..+...+ +.. ....+.......+-
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~l----RRk-r~ahkrpk~l~s~Gew 347 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRL----RRK-RTAHKRPKALYSSGEW 347 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhh----hhh-hhcccchHHHHhcCCc
Confidence 11111123468888899999999999999999999877 34444444443222211 110 00011111111111
Q ss_pred h------------CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC
Q 012413 370 A------------GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG 437 (464)
Q Consensus 370 a------------~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~ 437 (464)
+ ..++....|+..|+..+++.-+.++=-+||.+|+..++.|+..+|..... .+..|++++.++
T Consensus 348 SsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE 422 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDE 422 (823)
T ss_pred ccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccH
Confidence 0 01234556778888888888888888889999999999998876654433 477888888888
Q ss_pred CHHHHHHHHHHHHHhhcCC
Q 012413 438 SVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 438 ~~~v~~~A~~aL~~L~~~~ 456 (464)
-..||.+|..+|+.|+.+.
T Consensus 423 ~~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8889999999998888764
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0069 Score=65.39 Aligned_cols=213 Identities=15% Similarity=0.117 Sum_probs=132.3
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHH
Q 012413 228 LKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPL 306 (464)
Q Consensus 228 L~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~L 306 (464)
|++.+.-++..|+.+|++++..+-.+ ...|.+.++|+..++.+|..|+.+...+-.. ++..+. .++.-
T Consensus 116 L~s~nq~vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~ 184 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICSPEMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAF 184 (866)
T ss_pred ccCCCeeehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHH
Confidence 45567778888999999988644333 2467778899999999999998888876543 343333 36777
Q ss_pred HHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcC---------------CCHHHHHHHHHHHHHHh
Q 012413 307 VSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAG---------------QGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 307 i~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~---------------~~~~v~~~A~~aL~nLa 370 (464)
.++|.+.+..|....+..+..+|. +++....+.+ .++-+|..|+. +++-++...+..|+-|.
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence 788888889999999999999988 5566555555 55556655541 24566777887777776
Q ss_pred CCHhhHHH-H--------Hh-----cCcHHHHHHHHh-----cCCHHHHHHHHHHHHHHhhcCHHhHHHH----------
Q 012413 371 GIAEGREA-I--------VE-----ENGIAALVEAIE-----DGSVKGKEFAVLTLLQLCAESVKNRGLL---------- 421 (464)
Q Consensus 371 ~~~~~~~~-i--------~~-----~g~i~~Lv~lL~-----~~~~~v~~~A~~aL~~L~~~~~~~~~~i---------- 421 (464)
.++..... + .+ .-|-..|-+++. ..+..++..|+.+|+.+......+-+.+
T Consensus 263 q~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~ 342 (866)
T KOG1062|consen 263 QNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQ 342 (866)
T ss_pred CCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhc
Confidence 43211111 0 00 001122222222 2445566666666665554332221111
Q ss_pred ------HHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 422 ------VREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 422 ------~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.++ =..+++.|++.++.+|++|.+++-.|...
T Consensus 343 ~d~~avqrH--r~tIleCL~DpD~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 343 QDPTAVQRH--RSTILECLKDPDVSIKRRALELSYALVNE 380 (866)
T ss_pred CCcHHHHHH--HHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 111 14567778888888888888887776643
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0025 Score=68.81 Aligned_cols=243 Identities=18% Similarity=0.120 Sum_probs=180.4
Q ss_pred chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH-HhcCCCchHHHHHhcCcHHHHHHHHccCCHH-HHHHHHHHHHH
Q 012413 209 SDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALL-NLSLHENNKTLITNAGAIKSLVYVLKTGTET-SKQNAACALMS 286 (464)
Q Consensus 209 ~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~-~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-v~~~a~~aL~~ 286 (464)
...+...++.|+...|+.+.....+..+..+.++|. .+....+- ....++++...+...... -...++.++.|
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 444566778899999999999888898999999987 33332111 123556666666544322 23578999999
Q ss_pred hcccc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHH-HH-cCCHHHHHHhhcCCCHHHHHHHH
Q 012413 287 LALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERA-VS-AGAVRPLVGMLAGQGEGMAEKAM 363 (464)
Q Consensus 287 Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~i-v~-~g~v~~Lv~lL~~~~~~v~~~A~ 363 (464)
|+..+ ..|+.+...-+++.+-.++..+++..++.++..+.||..++..-+.. ++ ...++....++..........++
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a 648 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGA 648 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcc
Confidence 99884 56777888777888888888899999999999999999988755544 44 56777777777776666677778
Q ss_pred HHHHHHhCCHhh-HHHHHh-cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHH
Q 012413 364 VVLSLLAGIAEG-REAIVE-ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRA 441 (464)
Q Consensus 364 ~aL~nLa~~~~~-~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v 441 (464)
+++..++...++ +..+.+ ..+-..++.++.+.+..+|+..+....++.....+....+.....++.+..+-+......
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~ 728 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPK 728 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhh
Confidence 888877754433 332333 567888999999999999999999999987766666667777777888777777677778
Q ss_pred HHHHHHHHHHhhcCC
Q 012413 442 KHKAETLLGYLREPR 456 (464)
Q Consensus 442 ~~~A~~aL~~L~~~~ 456 (464)
++.++..|...-+++
T Consensus 729 ~~~~~~~l~~a~~~~ 743 (748)
T KOG4151|consen 729 REDAAPCLSAAEEYG 743 (748)
T ss_pred hhhhhhHHHHHHHhh
Confidence 888888877765544
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0081 Score=64.45 Aligned_cols=317 Identities=13% Similarity=0.087 Sum_probs=175.8
Q ss_pred hHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhh-hhcccCchhhHhhhcC---C
Q 012413 98 DDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLG-FLQRENFSTEIIESIS---P 172 (464)
Q Consensus 98 ~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~-~L~~~~~s~~i~~~~~---~ 172 (464)
.-++.+.+=|++ ++-||+||+-++..+ +.+. +.++|--+.++. +|..+.+..--+.++. .
T Consensus 134 pl~p~IracleHrhsYVRrNAilaifsI-----yk~~----------~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~ 198 (948)
T KOG1058|consen 134 PLMPSIRACLEHRHSYVRRNAILAIFSI-----YKNF----------EHLIPDAPELIESFLLTEQDPSCKRNAFLMLFT 198 (948)
T ss_pred hhHHHHHHHHhCcchhhhhhhheeehhH-----Hhhh----------hhhcCChHHHHHHHHHhccCchhHHHHHHHHHh
Confidence 344455566777 899999999999987 3221 225565555564 3443332111111110 0
Q ss_pred CCchHHHHHHHHh---cCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 012413 173 EDLQPTVKICIDG---LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH 249 (464)
Q Consensus 173 ~~~~~~v~~Lv~~---L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~ 249 (464)
-+-+.++.+|..+ ..+-++..+..-+..++..+..++.-+ ...|..+..+|.+.++.++..|+..|..++..
T Consensus 199 ~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~ 273 (948)
T KOG1058|consen 199 TDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND 273 (948)
T ss_pred cCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccCC
Confidence 1113455554444 345567778888888888877655443 35677899999999999999999999888876
Q ss_pred CchHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHH
Q 012413 250 ENNKTLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKL 328 (464)
Q Consensus 250 ~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL 328 (464)
+..-+. +...++.++.. .+-.++.-...-|..+.. .++. + -.|.+--++.+|..++-++++.++.....|
T Consensus 274 p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~-i-l~~l~mDvLrvLss~dldvr~Ktldi~ldL 344 (948)
T KOG1058|consen 274 PTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEK-I-LQGLIMDVLRVLSSPDLDVRSKTLDIALDL 344 (948)
T ss_pred HHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHH-H-HHHHHHHHHHHcCcccccHHHHHHHHHHhh
Confidence 654333 23344554433 333444444444444431 1111 1 133455667788888999999999988888
Q ss_pred hcCcchH--HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHH
Q 012413 329 CSLKQNK--ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVL 405 (464)
Q Consensus 329 ~~~~~~~--~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 405 (464)
..+.+.- -.+........-- -=.+....-|..-..+++..+ .+++.. +.+|+.|++.+.+.++..-...+.
T Consensus 345 vssrNvediv~~Lkke~~kT~~-~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~vl~ 418 (948)
T KOG1058|consen 345 VSSRNVEDIVQFLKKEVMKTHN-EESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEAAASDVLM 418 (948)
T ss_pred hhhccHHHHHHHHHHHHHhccc-cccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHHHHHHHHH
Confidence 7654321 1111110100000 001112233556666777766 455433 345677888887776655444444
Q ss_pred HHHHHhhcCHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 012413 406 TLLQLCAESVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 406 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~ 454 (464)
.+......-+..|.. .++.|+..+.. ....+-+.|.|.++.-++
T Consensus 419 FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 419 FVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred HHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 444444333333333 34555555433 345666777777766554
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00061 Score=56.00 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHh--cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc
Q 012413 359 AEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIE--DGSVKGKEFAVLTLLQLCAESVKNRGLLVRE 424 (464)
Q Consensus 359 ~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~ 424 (464)
+...+.+|+||+ .++..+..+.+.|+++.++.... +.+|.+++.|++|+.+|+..+++++..+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 566788999999 78899999999999999999987 4689999999999999999999999988774
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.019 Score=61.95 Aligned_cols=255 Identities=14% Similarity=0.090 Sum_probs=147.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTLI 256 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i 256 (464)
-|..+-+.|+++++.+|..|+++|..+= ..++..=++-.+-++..+..+.||..|+.|+-.|=. +++.+..+
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 4566678899999999999999985442 222221222233456677889999999999988744 44444432
Q ss_pred HhcCcHHHHHHHHccCCHHHHH-------------------------------------HHHHHHHHhcccc---cch--
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQ-------------------------------------NAACALMSLALIE---ENK-- 294 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~-------------------------------------~a~~aL~~Ls~~~---~~~-- 294 (464)
. ..+=.||.+.++-|.- .....|..-|.+. ...
T Consensus 182 ~-----e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~ 256 (968)
T KOG1060|consen 182 E-----EVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVD 256 (968)
T ss_pred H-----HHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccc
Confidence 2 2222333333333332 3333332222210 000
Q ss_pred --------------------hhhhccCChHHHH----HHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHh
Q 012413 295 --------------------SSIGACGAIPPLV----SLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGM 350 (464)
Q Consensus 295 --------------------~~i~~~g~i~~Li----~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~l 350 (464)
.-+...--+..|+ .||.+.++.|..+++.+.+.|+-..+. .+.+.+|+.+
T Consensus 257 ~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrL 330 (968)
T KOG1060|consen 257 SSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRL 330 (968)
T ss_pred cccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHH
Confidence 0000000112222 345567888999999999998763322 1246788888
Q ss_pred hcCCCHHHHHHHHHHHHHHhC-CH-------------------------hhHHHHHhcCcH----HHHHHHHhcCCHHHH
Q 012413 351 LAGQGEGMAEKAMVVLSLLAG-IA-------------------------EGREAIVEENGI----AALVEAIEDGSVKGK 400 (464)
Q Consensus 351 L~~~~~~v~~~A~~aL~nLa~-~~-------------------------~~~~~i~~~g~i----~~Lv~lL~~~~~~v~ 400 (464)
|.++ .+++.-.+..+..|+. .+ +.-..+..++-+ +.+..++++.+..+-
T Consensus 331 Lrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~fa 409 (968)
T KOG1060|consen 331 LRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFA 409 (968)
T ss_pred HhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHH
Confidence 8763 4556666666666652 11 112233344434 444455556666677
Q ss_pred HHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 401 EFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 401 ~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
..|+.+|+..+... .-+...++..|+.++.+.+..|...|+-.++.|-+..
T Consensus 410 a~aV~AiGrCA~~~-----~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 410 AAAVKAIGRCASRI-----GSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred HHHHHHHHHHHHhh-----CchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence 77777777655432 1234457889999999999999999988888887543
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00026 Score=47.65 Aligned_cols=40 Identities=33% Similarity=0.457 Sum_probs=36.4
Q ss_pred CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcc
Q 012413 250 ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLAL 289 (464)
Q Consensus 250 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~ 289 (464)
++++..+.+.|+++.|+++|++++.+++..++|+|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3477888999999999999999999999999999999863
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0015 Score=70.21 Aligned_cols=261 Identities=19% Similarity=0.179 Sum_probs=174.1
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
+-.+.+.++++....|.+.++-+--.|.+.+...+.. ..+++..++.=..+++|.+|..|.+.++.+-...
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~---- 117 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK---- 117 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH----
Confidence 3456677788888888888888888889998886653 3367888888888899999999999887765321
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
+. .-...+|...++++++.+|..++..+.++ +....+.+.+.|.++.|-.++.+.++.|..+|+.+|..+.....+
T Consensus 118 -i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 118 -IT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred -HH-HHHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 11 12577899999999999999999888887 445567778899999999999999999999999999999884432
Q ss_pred HHHH-HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHh--hHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 335 KERA-VSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE--GREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 335 ~~~i-v~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
...+ +....+..++..+..... +.-+.+|.+++..-. .++. ...+..+...+.+.+..+...+...+.++.
T Consensus 194 ~~~~~l~~~~~~~lL~al~ec~E---W~qi~IL~~l~~y~p~d~~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNECTE---WGQIFILDCLAEYVPKDSREA---EDICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred CCcccccHHHHHHHHHHHHHhhh---hhHHHHHHHHHhcCCCCchhH---HHHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 1100 111123334444433332 333344444442211 1111 124556666777777777788888887777
Q ss_pred hcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 412 AESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 412 ~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
..-+. .....-....++|+.++.+.. +++..|..=+..+-..+
T Consensus 268 ~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~ 310 (734)
T KOG1061|consen 268 KYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKR 310 (734)
T ss_pred HHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhC
Confidence 54333 222333456677777776665 66666555444444333
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0003 Score=51.00 Aligned_cols=55 Identities=20% Similarity=0.125 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 397 VKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 397 ~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
+.+|..|+++|++++...+..... ....+++.|+.+|+++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999988766554443 3356799999999999999999999999875
|
... |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0086 Score=62.44 Aligned_cols=260 Identities=11% Similarity=0.014 Sum_probs=164.8
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhcC----ChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHHHHhcCcH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESG----AVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTLITNAGAI 262 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g----~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i 262 (464)
.++..+|..|+.+|.+-.. ..+..+-..+ .+...+..-+.++.+++..|..+|..|-. +-+.-+...+.-..
T Consensus 189 et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~ 265 (858)
T COG5215 189 ETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALA 265 (858)
T ss_pred CchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999966211 1111111112 23334455677899999999999998865 33444455555555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccc-cc----hh------------hhhccCChHHHHHHhhcC-------ChhhH
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALIE-EN----KS------------SIGACGAIPPLVSLLIYG-------SSRGK 318 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~----~~------------~i~~~g~i~~Li~lL~~~-------~~~v~ 318 (464)
......+++++.++...+...-..++..+ +. +. .-.-...+|.|++||... +..+-
T Consensus 266 alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~s 345 (858)
T COG5215 266 ALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPS 345 (858)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchh
Confidence 66677889999999999887776665421 11 10 001134789999999762 33466
Q ss_pred HHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH--hhHHHHHhcCcHHHHHHHHhcCC
Q 012413 319 KDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA--EGREAIVEENGIAALVEAIEDGS 396 (464)
Q Consensus 319 ~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~--~~~~~i~~~g~i~~Lv~lL~~~~ 396 (464)
..|..+|.-.+....+ ++++- ++.-+-.-++.++-.-++.|..+++.+...+ ..+..++ ..++|.+...+.++.
T Consensus 346 maA~sCLqlfaq~~gd--~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~ 421 (858)
T COG5215 346 MAASSCLQLFAQLKGD--KIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSC 421 (858)
T ss_pred hhHHHHHHHHHHHhhh--HhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccce
Confidence 6777776654442211 12221 2333333445666666888999999988543 3344444 467888999999888
Q ss_pred HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhh-hc--CCHHHHHHHHHHHHHhhcCCC
Q 012413 397 VKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALS-QT--GSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 397 ~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~s--~~~~v~~~A~~aL~~L~~~~~ 457 (464)
-.++..++||++.|+.+- ...+-.+|-++..+..+ .. ++|.+..++.|...++.+|=.
T Consensus 422 l~vk~ttAwc~g~iad~v---a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 422 LWVKSTTAWCFGAIADHV---AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIA 482 (858)
T ss_pred eehhhHHHHHHHHHHHHH---HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhh
Confidence 999999999999998642 22333345444444433 22 578999999999999988643
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0035 Score=65.30 Aligned_cols=262 Identities=16% Similarity=0.095 Sum_probs=132.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLIT 257 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~ 257 (464)
..+.|-.+|++.-.-|...+++.+..++..+- ...+. ..+|..|-.+|+++....|-.|.+.|..|+.-.+.+..++
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 45556677777778899999999998886641 11121 2456777788888989999999999999987432222111
Q ss_pred hc----------C--cHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccc-hhhhhcc-------------CChHHHHHHh
Q 012413 258 NA----------G--AIKSLVYVLKTGTETSKQNAACALMSLALI-EEN-KSSIGAC-------------GAIPPLVSLL 310 (464)
Q Consensus 258 ~~----------g--~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~-~~~i~~~-------------g~i~~Li~lL 310 (464)
.. . ..-++..+|+.+..+....-...+-++..+ +++ |-.++++ ..+..|...|
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L 421 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSL 421 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 11 1 122344455554443322222222221111 010 1000000 0111222222
Q ss_pred hc-CChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHHH
Q 012413 311 IY-GSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEENGIAA 387 (464)
Q Consensus 311 ~~-~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~ 387 (464)
.+ +.-+.++.+..++..+.. .|+.++. ++..|..++.++.- .+-+..+|+-|... |.... -..-|..
T Consensus 422 ~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~---P~~yvrh 491 (898)
T COG5240 422 LQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEY--HQITVRILGILGREGPRAKT---PGKYVRH 491 (898)
T ss_pred HhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCC---cchHHHH
Confidence 11 233344444444444433 2232222 22233333333221 11222222222210 00000 0002333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 388 LVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 388 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+.+-+--++..+|..|+.||..++-.. ...+....+...|.+.+.+.+++||..|..+|+++...
T Consensus 492 IyNR~iLEN~ivRsaAv~aLskf~ln~---~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 492 IYNRLILENNIVRSAAVQALSKFALNI---SDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhccCc---cccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 444444467789999999997776431 11233344567888899999999999999999998743
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.098 Score=58.55 Aligned_cols=310 Identities=16% Similarity=0.084 Sum_probs=177.4
Q ss_pred cchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCC
Q 012413 95 ISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPE 173 (464)
Q Consensus 95 ~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~ 173 (464)
+=|..++.|.+.+.| ++.+|=.|+..++|+++.... ++. +
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~La----------------------------d--------- 378 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--ELA----------------------------D--------- 378 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HHH----------------------------H---------
Confidence 346889999999999 999999999999998644331 110 1
Q ss_pred CchHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCC--------HHHHHHHHHHHH
Q 012413 174 DLQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSD--------PWTQEHSVTALL 244 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~--------~~v~~~A~~aL~ 244 (464)
.+|...++++.- .++..-..|+-+|..++...--.-..+ ..++|.++.-|..++ ..||..|+.++.
T Consensus 379 ---~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~W 453 (1133)
T KOG1943|consen 379 ---QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCW 453 (1133)
T ss_pred ---HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHH
Confidence 223333333332 234555688889988887633222222 146777777765533 468999999999
Q ss_pred HhcCC--CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc--------------------------hhh
Q 012413 245 NLSLH--ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN--------------------------KSS 296 (464)
Q Consensus 245 ~La~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~--------------------------~~~ 296 (464)
.+++. +..-+.+...=.-..|+..+-+.+..+|..|..|+-....-..+ +..
T Consensus 454 Af~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ 533 (1133)
T KOG1943|consen 454 AFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVS 533 (1133)
T ss_pred HHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHH
Confidence 98873 22222233322223445555677788899888888765432111 111
Q ss_pred hhc-cCChHHHHHHhhcC-----ChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 012413 297 IGA-CGAIPPLVSLLIYG-----SSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLL 369 (464)
Q Consensus 297 i~~-~g~i~~Li~lL~~~-----~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nL 369 (464)
+.+ .|...++++-|-.. +..++..++++|.+|+.. ++ ....+.+++++......+...+.-+..+.+.+
T Consensus 534 ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev 609 (1133)
T KOG1943|consen 534 IAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEV 609 (1133)
T ss_pred HHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence 222 34455666554432 788999999999998773 33 24556888888888777776666655555555
Q ss_pred hCCHhhHH----HHHh---cC---cHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC
Q 012413 370 AGIAEGRE----AIVE---EN---GIAALVEAIEDG--SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG 437 (464)
Q Consensus 370 a~~~~~~~----~i~~---~g---~i~~Lv~lL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~ 437 (464)
...-.... .+.+ +| .++++...-... ..-++...+..+.++..........+.-++.-..+-..+...
T Consensus 610 ~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~ 689 (1133)
T KOG1943|consen 610 IGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP 689 (1133)
T ss_pred HHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch
Confidence 43211111 0111 11 122222221111 134455556666666655444444444444444444444233
Q ss_pred CHHHHHHHHHHHHHhh
Q 012413 438 SVRAKHKAETLLGYLR 453 (464)
Q Consensus 438 ~~~v~~~A~~aL~~L~ 453 (464)
+ -+|..|.++++.+.
T Consensus 690 n-~i~~~av~av~~l~ 704 (1133)
T KOG1943|consen 690 N-QIRDAAVSAVSDLV 704 (1133)
T ss_pred H-HHHHHHHHHHHHHH
Confidence 3 67777888877665
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00053 Score=46.08 Aligned_cols=40 Identities=35% Similarity=0.457 Sum_probs=36.0
Q ss_pred chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 012413 209 SDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 209 ~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~ 248 (464)
++++..+.+.|+++.|+++|++++++++..|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3467788899999999999999999999999999999873
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0016 Score=68.11 Aligned_cols=216 Identities=13% Similarity=0.143 Sum_probs=144.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcCC---CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchh-h
Q 012413 221 VPALVPLLKCSDPWTQEHSVTALLNLSLH---ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKS-S 296 (464)
Q Consensus 221 i~~Ll~lL~~~~~~v~~~A~~aL~~La~~---~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~-~ 296 (464)
|..++.+|++..|.++..|+...+.|+.- ...-+.+...|.| |.+-|...++++.-..+.|++.+...-..+. +
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 44556788899999999999999888742 1122233333333 5566677888888888888877654322111 1
Q ss_pred hhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cc---hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC
Q 012413 297 IGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQ---NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI 372 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~---~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 372 (464)
---.|.+|.|...|++....+..+....++.+|.. ++ .++-|. .-=.|+..|++.+.+++..|...++.++.
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~- 759 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISR- 759 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHh-
Confidence 11267899999999999999999999999999984 33 233332 22357888888899999999999998885
Q ss_pred HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 373 AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 373 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
+|.-+.++..|++-|+..+.+.|.....+++-.+..+ --..++|.|+.=...+...||.....++..+
T Consensus 760 -----aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~c-------gpfsVlP~lm~dY~TPe~nVQnGvLkam~fm 827 (975)
T COG5181 760 -----AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYC-------GPFSVLPTLMSDYETPEANVQNGVLKAMCFM 827 (975)
T ss_pred -----hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc-------CchhhHHHHHhcccCchhHHHHhHHHHHHHH
Confidence 3333456667777776655555554444444433211 0124566666666667778888888887765
Q ss_pred hc
Q 012413 453 RE 454 (464)
Q Consensus 453 ~~ 454 (464)
=+
T Consensus 828 Fe 829 (975)
T COG5181 828 FE 829 (975)
T ss_pred HH
Confidence 44
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.017 Score=52.72 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCc-HHHHHHH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGA-IKSLVYV 268 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~-i~~Lv~l 268 (464)
++.+|..++.+++.++...+.. ++ ..++.+..+|+++++.||..|+.+|..|....-.+. .|. +..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----VE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----HH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 5789999999999998765432 22 578899999999999999999999999987543322 233 3778889
Q ss_pred HccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc
Q 012413 269 LKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY 312 (464)
Q Consensus 269 L~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~ 312 (464)
+.+++++++..|..++..+..... ...+ ...++.++..|..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~-~~~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRN-PNII--YNNFPELISSLNN 112 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcc-chHH--HHHHHHHHHHHhC
Confidence 999999999999999999876521 1111 2235555555554
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.01 Score=63.35 Aligned_cols=240 Identities=16% Similarity=0.166 Sum_probs=157.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHHHHhcCcHHH
Q 012413 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTLITNAGAIKS 264 (464)
Q Consensus 186 L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~ 264 (464)
+++.+..-.--|+..|..+... .. ..+.-+-++.+|.+..|.+|..|..+|..+.. .|+.-. ..+|.
T Consensus 118 l~S~n~ye~giAL~GLS~fvTp--dL-----ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~Fpr 185 (877)
T KOG1059|consen 118 LNSSNVYEVGLALSGLSCIVTP--DL-----ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPR 185 (877)
T ss_pred hccCccchhhheecccccccCc--hh-----hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHH
Confidence 3444433333455555444433 11 22455668899999999999999999998865 344322 36899
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcchHHHHHHcC
Q 012413 265 LVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLKQNKERAVSAG 342 (464)
Q Consensus 265 Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~iv~~g 342 (464)
|+.-|.++|+.++..|..+++.|+.. +.+--.+ -|.+.++|.+. |-=+....+...++|+--.+- ....
T Consensus 186 L~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKK 256 (877)
T KOG1059|consen 186 LVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKK 256 (877)
T ss_pred HHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhh
Confidence 99999999999999999999999865 4443222 46777887654 555777788888888774332 2233
Q ss_pred CHHHHHHhhcCCCH-HHHHHHHHHHH--HHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhH
Q 012413 343 AVRPLVGMLAGQGE-GMAEKAMVVLS--LLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNR 418 (464)
Q Consensus 343 ~v~~Lv~lL~~~~~-~v~~~A~~aL~--nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~ 418 (464)
.+++|.+++.+... .+..++..++- +|. +.+++-..+ .=+++.|-.++.+.++.++.-++.+++.++..++...
T Consensus 257 Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V 334 (877)
T KOG1059|consen 257 LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV 334 (877)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH
Confidence 67788888876432 22333332221 222 222221111 1256777777888899999999999999987666533
Q ss_pred HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 419 GLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
..- -..++++|.+.++.+|-+|..+|..+.
T Consensus 335 qa~-----kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 335 QAH-----KDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHh-----HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 321 356777888888888888888776654
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.01 Score=64.95 Aligned_cols=140 Identities=19% Similarity=0.145 Sum_probs=74.2
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
+....+.+++...+.|.++|+-.=..|..+++.+|+.. + =+++.+.+=++++++.+|..|+++|+.+-..
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~~----- 122 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--L---LAVNTIQKDLQDPNEEIRGFALRTLSLLRVK----- 122 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--H---HHHHHHHhhccCCCHHHHHHHHHHHHhcChH-----
Confidence 33444555555555555555555555555555544221 1 1344555555666666666666666544211
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHH
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYK 327 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~n 327 (464)
.+ -...++++.+++.++++.||..|+.++.++ ..-.+..+.+.|.+..+..++.+.++.|..+|+.+|..
T Consensus 123 el-~~~~~~~ik~~l~d~~ayVRk~Aalav~kl--y~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~ 192 (757)
T COG5096 123 EL-LGNIIDPIKKLLTDPHAYVRKTAALAVAKL--YRLDKDLYHELGLIDILKELVADSDPIVIANALASLAE 192 (757)
T ss_pred HH-HHHHHHHHHHHccCCcHHHHHHHHHHHHHH--HhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 11 112455566666666666666666666655 22234444555556666666666666666666666554
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.087 Score=49.81 Aligned_cols=179 Identities=14% Similarity=0.078 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc-----CCHHHHHHHHHHHHHhcccc--cchhhhhccCChH
Q 012413 232 DPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT-----GTETSKQNAACALMSLALIE--ENKSSIGACGAIP 304 (464)
Q Consensus 232 ~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~ 304 (464)
...-..+|...|..++.|++.|..+.++..--.|-.+|.. +.+.+|..++++++.|.+.+ +.-..+...+.+|
T Consensus 92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 3455678888888899999999999998765556666644 46789999999999999874 3445566789999
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHhcCcchHH-------HHHH-cCCHH-HHHHhhcCCCHHHHHHHHHHHHHHhCCHhh
Q 012413 305 PLVSLLIYGSSRGKKDALTTLYKLCSLKQNKE-------RAVS-AGAVR-PLVGMLAGQGEGMAEKAMVVLSLLAGIAEG 375 (464)
Q Consensus 305 ~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~-------~iv~-~g~v~-~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 375 (464)
..++.+..++...+.-|+.++..+..++.+.. +|.. ...+. .+..+.+.+...+..++..+.-+|+.++..
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra 251 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA 251 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999988765432 2221 11233 334455677788899999999999999988
Q ss_pred HHHHHh---cCcH-HHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 376 REAIVE---ENGI-AALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 376 ~~~i~~---~g~i-~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
+..+.. .+.- ...-.+++ +|+..+..-...+.+++
T Consensus 252 r~aL~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 252 RAALRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHHHHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHhc
Confidence 777764 1111 12222333 34445555555555544
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.013 Score=64.37 Aligned_cols=268 Identities=15% Similarity=0.095 Sum_probs=156.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhc
Q 012413 181 ICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNA 259 (464)
Q Consensus 181 ~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~ 259 (464)
.|++.+.++|.+.|.-|..-|..=-+.....-+.=.+..++..|+++|++.+++|+..|..+|+-|+.. ++.+- .
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l----e 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL----E 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH----H
Confidence 567778899999999888777433322222212222357789999999999999999999999998842 22110 1
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcC------ChhhHHHHHHHHHHHhc-C
Q 012413 260 GAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYG------SSRGKKDALTTLYKLCS-L 331 (464)
Q Consensus 260 g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~------~~~v~~~A~~aL~nL~~-~ 331 (464)
..+..|..-+-++.+..|.-+.-.|...-.+ +...........++.+..-|... ...++-.++..++.+-. .
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 1334444444455566665555454432222 22222233344455555555432 34477777777666533 1
Q ss_pred cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHH
Q 012413 332 KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED-GSVKGKEFAVLTLLQL 410 (464)
Q Consensus 332 ~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L 410 (464)
....-. ...+....++--+.+....++.+|+.+|+.++..-. ...-.+.+..|+.-|.. ..+..-.--+.+|+.+
T Consensus 165 g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~---~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i 240 (1233)
T KOG1824|consen 165 GTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN---RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAI 240 (1233)
T ss_pred cccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 111111 234455566666777788899999999999984211 01112334444444432 3444455556677777
Q ss_pred hhcCHHhHHHHHHcCChHHHHHhh---hcCCHHHHHHHHHHHHHhhcCCC
Q 012413 411 CAESVKNRGLLVREGGIPPLVALS---QTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 411 ~~~~~~~~~~i~~~g~i~~Lv~lL---~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
|.... .|-----...++.+.+.. ..+++++|+....++..+-...|
T Consensus 241 ~r~ag-~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp 289 (1233)
T KOG1824|consen 241 CRQAG-HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP 289 (1233)
T ss_pred HHHhc-chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh
Confidence 75321 111101135677777877 66788999999999998776444
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.003 Score=51.90 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhh--cCCCHHHHHHHHHHHHHHh-CCHhhHHHHHh
Q 012413 317 GKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGML--AGQGEGMAEKAMVVLSLLA-GIAEGREAIVE 381 (464)
Q Consensus 317 v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL--~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~ 381 (464)
++...+.+|+||+. ++.+++.+.+.|++|.++..- ++.++.+++.|..++.||+ +++++++.|.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 56788899999999 678999999999999999875 5667899999999999999 67888888876
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.02 Score=54.85 Aligned_cols=219 Identities=16% Similarity=0.106 Sum_probs=143.4
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHh-------hcCCC--H---HHHHHHHHHHHHhcCCCchHHHH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIGE-SGAVPALVPL-------LKCSD--P---WTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~~-~g~i~~Ll~l-------L~~~~--~---~v~~~A~~aL~~La~~~~~~~~i 256 (464)
+++.|+.|+..|..--...+...-.+-. -|.+..|++= +..+. + .-..+|+..|..++.|++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5677887777665444443444444443 4666666542 22221 2 33456666677789999999999
Q ss_pred HhcCcHHHHHHHHccC-----CHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHh
Q 012413 257 TNAGAIKSLVYVLKTG-----TETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLC 329 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~-----~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~ 329 (464)
.++...-.|...|+.. -+.+|..++++++.|.+. ++.-..+...+.+|..+..+..++.-.+..|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9998877777777654 367999999999999985 355666778899999999999999999999999999988
Q ss_pred cCcchHHH-------HHH-cCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHH-----HHHHHhcC
Q 012413 330 SLKQNKER-------AVS-AGAVRPLVG-MLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAA-----LVEAIEDG 395 (464)
Q Consensus 330 ~~~~~~~~-------iv~-~g~v~~Lv~-lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~-----Lv~lL~~~ 395 (464)
.++.+... +.. ..++..++. +...+.+.+.++...+-..|+.++..+..+.. .+|. ....+-.+
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~--~LP~~Lrd~~f~~~l~~ 245 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ--CLPDQLRDGTFSNILKD 245 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH--HS-GGGTSSTTTTGGCS
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH--hCcHHHhcHHHHHHHhc
Confidence 87665433 222 223444443 44667788999999999999999988888764 1211 01111123
Q ss_pred CHHHHHHHHHHHHHH
Q 012413 396 SVKGKEFAVLTLLQL 410 (464)
Q Consensus 396 ~~~v~~~A~~aL~~L 410 (464)
|+.++..-...+.|+
T Consensus 246 D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 246 DPSTKRWLQQLLSNL 260 (262)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 566666655555554
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.012 Score=64.55 Aligned_cols=236 Identities=14% Similarity=0.084 Sum_probs=141.4
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh-cCCCch
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNL-SLHENN 252 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~L-a~~~~~ 252 (464)
...++++.+++.|.+.+.+|+-.|+++|+-++..-.+.+- + ..++.|..-+-+.....+..+.-.|... +.-++.
T Consensus 44 Se~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l---e-~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~ 119 (1233)
T KOG1824|consen 44 SERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL---E-TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPS 119 (1233)
T ss_pred chhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH---H-HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCc
Confidence 3378999999999999999999999999988855333221 1 2344555444444444454444444333 222322
Q ss_pred HHHHHhcCcHHHHHHHHcc------CCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHH
Q 012413 253 KTLITNAGAIKSLVYVLKT------GTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTL 325 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~------~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL 325 (464)
........+.+.+..-|.. +...++..++..+..+-.. .+.-.. ...+....++.-+.++...+|+.|+.+|
T Consensus 120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l 198 (1233)
T KOG1824|consen 120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITAL 198 (1233)
T ss_pred cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 2223333444444444433 3445777777777764322 111100 1223344444555566778999999999
Q ss_pred HHHhcCcchHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHH---hcCCHHHHH
Q 012413 326 YKLCSLKQNKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAI---EDGSVKGKE 401 (464)
Q Consensus 326 ~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~v~~ 401 (464)
+.|+..-.. ..-.+.+..|+.-|... ......--..+|+.++.....+..-.-...++.+.+++ .+.++++++
T Consensus 199 ~~la~~~~~---~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE 275 (1233)
T KOG1824|consen 199 GHLASSCNR---DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELRE 275 (1233)
T ss_pred HHHHHhcCH---HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHH
Confidence 999873321 12223555566655443 33334455667777775444433333345789999999 678899999
Q ss_pred HHHHHHHHHhhcCHHh
Q 012413 402 FAVLTLLQLCAESVKN 417 (464)
Q Consensus 402 ~A~~aL~~L~~~~~~~ 417 (464)
.++.++..+....+..
T Consensus 276 ~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 276 YCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHHHHHHhChhh
Confidence 9999999988765543
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.012 Score=64.25 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
-++..+.+-++++++.+|..|++.+..+--. .+ -..+++++.++++++++.||+.|+.++.++=. -.+..+
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~l~~~------el-~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~ 162 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSLLRVK------EL-LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLY 162 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhcChH------HH-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhh
Confidence 4778888889999999999999999766433 22 23578999999999999999999999998853 334688
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSL 287 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L 287 (464)
.+.|.+..+..++.+.++.+..+|..+|..+
T Consensus 163 ~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 163 HELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred hcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 8899999999999999999999999999997
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.03 Score=60.54 Aligned_cols=257 Identities=19% Similarity=0.154 Sum_probs=151.1
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCch--
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENN-- 252 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~-- 252 (464)
.+..+.+=.+|.+...-|..+|++++..+..-+.. .+ ..++..|-.++.++.+-+|-.|.++|..++. +|..
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---EL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc
Confidence 35667777788888899999999999888765432 12 2378888888999999999999999999986 3321
Q ss_pred ------HHHHHhcC---cHHHHHHHHccCCHHH----HHHHHHHHHHhcccccchhhhh-------------ccCChHHH
Q 012413 253 ------KTLITNAG---AIKSLVYVLKTGTETS----KQNAACALMSLALIEENKSSIG-------------ACGAIPPL 306 (464)
Q Consensus 253 ------~~~i~~~g---~i~~Lv~lL~~~~~~v----~~~a~~aL~~Ls~~~~~~~~i~-------------~~g~i~~L 306 (464)
-..|-+.+ +-.++..+|+.+.+.- .........+++. +.+-.++ ..+.+..|
T Consensus 319 ~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD--eFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 319 VCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD--EFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred ccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--cceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 11222211 4456667777765543 3334444444432 2211111 12233444
Q ss_pred HHHhhcC-ChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcC
Q 012413 307 VSLLIYG-SSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEEN 383 (464)
Q Consensus 307 i~lL~~~-~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g 383 (464)
..+|+++ .-+.++....++..+.. .++.++. ++..|...+.++.- ..-+..+|+-|.. .+. ......
T Consensus 397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~--~~i~~rILhlLG~EgP~---a~~Psk 466 (865)
T KOG1078|consen 397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEF--TQIAVRILHLLGKEGPK---APNPSK 466 (865)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccc--hHHHHHHHHHHhccCCC---CCCcch
Confidence 4444442 33455555555555544 3333222 44455555544321 2333344443331 000 000012
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
-+..+.+.+.-++..+|..|+.+|.+++..++..+ ..+...|.+.+.+.+.++|+.|..+|+.+.+
T Consensus 467 yir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 467 YIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 23444444445678899999999999996554322 3456677888888999999999999999983
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.033 Score=54.43 Aligned_cols=231 Identities=14% Similarity=0.008 Sum_probs=154.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH-hcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 180 KICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG-ESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 180 ~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~-~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
+.|-+.++.-++-.|.-|+++|.++... ++.|..+- +...-..++.+++. .+.++|...+-++.-++.+++..+.+
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi 230 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDI 230 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHH
Confidence 3333445556667888999999999887 55555544 34455667888877 56789999999999999988776444
Q ss_pred Hh-cCcHHHHHHHHccC-CHHHHHHHHHHHHHhcccc--cchhhhhccCChHHHHHHhhcC---ChhhHHHHHHH-----
Q 012413 257 TN-AGAIKSLVYVLKTG-TETSKQNAACALMSLALIE--ENKSSIGACGAIPPLVSLLIYG---SSRGKKDALTT----- 324 (464)
Q Consensus 257 ~~-~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~Li~lL~~~---~~~v~~~A~~a----- 324 (464)
-. ...+..|+++.+.. .+.+-+.+++.+.|++... +.-....-.|-+.+-+++|... +.+++...-.+
T Consensus 231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~ 310 (432)
T COG5231 231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV 310 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 43 44677777777765 4567788899999987631 2222233345456666666542 44333221111
Q ss_pred ------------HHHH-----hcCc---------chHHHHHH--cCCHHHHHHhhcCCCHH-HHHHHHHHHHHHh-CCHh
Q 012413 325 ------------LYKL-----CSLK---------QNKERAVS--AGAVRPLVGMLAGQGEG-MAEKAMVVLSLLA-GIAE 374 (464)
Q Consensus 325 ------------L~nL-----~~~~---------~~~~~iv~--~g~v~~Lv~lL~~~~~~-v~~~A~~aL~nLa-~~~~ 374 (464)
+..| +-++ .|...+.+ -..+..|..+++...+. ...-|+.=+..+. ..|+
T Consensus 311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence 1111 1111 13334443 33678888888877666 3444566666666 6799
Q ss_pred hHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 375 GREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
.+..+...|+=+.+++++.+++++++-.|+.++..+.
T Consensus 391 ~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 391 INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999987664
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0093 Score=64.52 Aligned_cols=199 Identities=16% Similarity=0.134 Sum_probs=149.8
Q ss_pred CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHH-HhcccccchhhhhccCChHHHHHHhhcCCh-hhHHHHHHHHH
Q 012413 249 HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALM-SLALIEENKSSIGACGAIPPLVSLLIYGSS-RGKKDALTTLY 326 (464)
Q Consensus 249 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~-~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~-~v~~~A~~aL~ 326 (464)
....+...+..|+...|+.+.....+..+.....+|. .+....+- ....++++...+..... .-...++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 4555667788999999999999999999988888888 33222111 12345555555554322 22346888999
Q ss_pred HHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHH-HHHh-cCcHHHHHHHHhcCCHHHHHHH
Q 012413 327 KLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGRE-AIVE-ENGIAALVEAIEDGSVKGKEFA 403 (464)
Q Consensus 327 nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~i~~-~g~i~~Lv~lL~~~~~~v~~~A 403 (464)
||+.. ...++.++.+-+++.+-.++.++++..+..++..+.||..++...+ .+++ ....+....++..........+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 99994 4677888888788888888888899999999999999997776544 4455 4578888888888888889999
Q ss_pred HHHHHHHhhcCHHhHH-HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 404 VLTLLQLCAESVKNRG-LLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 404 ~~aL~~L~~~~~~~~~-~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
+.++..++...+..+. ...-..+.+.++.++.++++.+++......-++
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~ 697 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL 697 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH
Confidence 9999988887776666 444467899999999999999998877665553
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.047 Score=49.81 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCC-hHHHHHH
Q 012413 232 DPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGA-IPPLVSL 309 (464)
Q Consensus 232 ~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~-i~~Li~l 309 (464)
+|.+|.+++.+++.|+.. +..- ...+|.+...|+++++.+|..|+.+|..|...+- +.-.|- +..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHH
Confidence 578999999999999873 3322 2378899999999999999999999999865422 222333 4888899
Q ss_pred hhcCChhhHHHHHHHHHHHhcC
Q 012413 310 LIYGSSRGKKDALTTLYKLCSL 331 (464)
Q Consensus 310 L~~~~~~v~~~A~~aL~nL~~~ 331 (464)
+.++++.++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.052 Score=58.80 Aligned_cols=246 Identities=17% Similarity=0.124 Sum_probs=157.4
Q ss_pred HHHhcCCCCHHHHHHHHHHH-HHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcC
Q 012413 182 CIDGLQSSSVAIKRSAAAKL-RLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAG 260 (464)
Q Consensus 182 Lv~~L~s~~~~vr~~A~~~L-~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g 260 (464)
|..+|.+.....+..|++-+ ..++++. . -....|.+++..-+.++++++-.-.-|...+....+-.. =
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~-d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----L 108 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGK-D------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----L 108 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCC-c------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----e
Confidence 35667776666777777665 4445552 2 234678888888899999998888777777764322111 1
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHH
Q 012413 261 AIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAV 339 (464)
Q Consensus 261 ~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv 339 (464)
-|..+-+-|+++++.+|..|+.+|..| |-.++..=.+-.+=++..+..+.||+.|+.|+-.|=. .++.+.+++
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~ 182 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE 182 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH
Confidence 466778899999999999998888886 2222111112222345567799999999999999977 455554433
Q ss_pred HcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc---CHH
Q 012413 340 SAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE---SVK 416 (464)
Q Consensus 340 ~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~---~~~ 416 (464)
..+-.+|.+..+.|...|+.+...+|-.. -.++ ++-...|++++.+-++.-|...+..|-.-|++ .|.
T Consensus 183 -----e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI-HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~ 253 (968)
T KOG1060|consen 183 -----EVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI-HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPT 253 (968)
T ss_pred -----HHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh-hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcc
Confidence 45667788999999999998888887321 1111 34466677777776666666666666555542 110
Q ss_pred hHHHHHHc-C------------------------ChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 417 NRGLLVRE-G------------------------GIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 417 ~~~~i~~~-g------------------------~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
.-....+. | .++...-++++.++.|...++.+...++
T Consensus 254 ~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lA 315 (968)
T KOG1060|consen 254 VVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLA 315 (968)
T ss_pred ccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhC
Confidence 00000000 0 1233344567778888888888888776
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.02 Score=64.51 Aligned_cols=224 Identities=14% Similarity=0.040 Sum_probs=149.6
Q ss_pred hHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc----ccchh
Q 012413 221 VPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI----EENKS 295 (464)
Q Consensus 221 i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~----~~~~~ 295 (464)
++.+..++++ ...+.+..|+..|..++..-..-.+ -..++|.++.++.++...||..|+.+|..+-.. +..-.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~--LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK--LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH--HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 6667777777 6678899999999999875322112 235899999999999999999999999886432 11222
Q ss_pred hhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcch----H--------------------------HHHHHcCCH
Q 012413 296 SIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQN----K--------------------------ERAVSAGAV 344 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~----~--------------------------~~iv~~g~v 344 (464)
.|...-.+|.|-.++.+ ....+|..-+..|+.|+..... . ++++ .++-
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-~~V~ 580 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-HTVE 580 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-HHHH
Confidence 23333457777777777 4555776666667666553110 0 1111 1122
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcC----cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHH
Q 012413 345 RPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEEN----GIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGL 420 (464)
Q Consensus 345 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g----~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 420 (464)
+..+.+|.++.+-|++.-+..|.-||. .+..++ .+..|+.+|++.+..+|..--..|..++..- ...
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V---G~r 651 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV---GWR 651 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEE---eee
Confidence 344556666666777777777777774 233222 5788999999988888876666665544321 001
Q ss_pred HHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 421 LVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 421 i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
-++++.+|.|..-|.++.+.|-.+|.++|..|.+.+
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence 135678888999999999999999999999887654
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0046 Score=50.60 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCC
Q 012413 194 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGT 273 (464)
Q Consensus 194 r~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~ 273 (464)
|..++.+|..++..-+....... ...+++++.++.+++.+||..|+.+|.++++.-.......-....+.|.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 55667777666655333322222 36899999999999999999999999999875432222223557888999999999
Q ss_pred HHHHHHHHHHHHHh
Q 012413 274 ETSKQNAACALMSL 287 (464)
Q Consensus 274 ~~v~~~a~~aL~~L 287 (464)
+.||..| ..|-++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 9988655 555444
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.078 Score=57.20 Aligned_cols=246 Identities=16% Similarity=0.181 Sum_probs=138.8
Q ss_pred HhhhcCC-CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHH
Q 012413 166 IIESISP-EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPL-LKCSDPWTQEHSVTAL 243 (464)
Q Consensus 166 i~~~~~~-~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~l-L~~~~~~v~~~A~~aL 243 (464)
+.+.+.+ +-+.|.+|.+..+|.+.+..||++|.-++..+-+..+. .+ .++-+.+-.. +...||..+++|...|
T Consensus 122 FLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~--pDapeLi~~fL~~e~DpsCkRNAFi~L 196 (948)
T KOG1058|consen 122 FLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LI--PDAPELIESFLLTEQDPSCKRNAFLML 196 (948)
T ss_pred hhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hc--CChHHHHHHHHHhccCchhHHHHHHHH
Confidence 3333433 44567888889999999999999999999888766221 11 1222223333 3446777777766554
Q ss_pred HHhc-------------C----CCchHHHHH-------------hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc
Q 012413 244 LNLS-------------L----HENNKTLIT-------------NAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN 293 (464)
Q Consensus 244 ~~La-------------~----~~~~~~~i~-------------~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~ 293 (464)
.... . ++..+-.|+ +...|..+..+|.+.++.++..|+.+|..|+.++..
T Consensus 197 ~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~a 276 (948)
T KOG1058|consen 197 FTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTA 276 (948)
T ss_pred HhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHH
Confidence 3331 1 011111111 122456666677777777777777777777665432
Q ss_pred hhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC
Q 012413 294 KSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI 372 (464)
Q Consensus 294 ~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 372 (464)
-.. +...+++++... +-.++.-.+.-|..+.. ..+.+. .|.+-.++.+|..++-+++.+++.....|+.+
T Consensus 277 lk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~---~~~~il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 277 LKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKA---LHEKIL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhh---hhHHHH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 111 234455555432 33444444444444431 111111 23555667788888888999888887777642
Q ss_pred HhhHHHHHhcCcHHHHHHHHhc-----------CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHH
Q 012413 373 AEGREAIVEENGIAALVEAIED-----------GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVR 440 (464)
Q Consensus 373 ~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~ 440 (464)
.-+..++++|+- ....-|+.-+.++...+..-++.. +.+++.|++.+.+.++.
T Consensus 348 ----------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~ 411 (948)
T KOG1058|consen 348 ----------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEA 411 (948)
T ss_pred ----------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHH
Confidence 223334444431 223446677777777665544422 34578888888887663
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0069 Score=55.94 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=96.4
Q ss_pred cCChhhHHHHHHHHHHHhcCcchHHHHHH----------------cCCHHHHHHhhcC------CCHHHHHHHHHHHHHH
Q 012413 312 YGSSRGKKDALTTLYKLCSLKQNKERAVS----------------AGAVRPLVGMLAG------QGEGMAEKAMVVLSLL 369 (464)
Q Consensus 312 ~~~~~v~~~A~~aL~nL~~~~~~~~~iv~----------------~g~v~~Lv~lL~~------~~~~v~~~A~~aL~nL 369 (464)
+++......++-+|.||++.+..+..+++ ...+..|+.++.. ...+-..+.+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 44555677889999999998888776653 1256777777754 2244578899999999
Q ss_pred hCCHhhHHHHHhc--Cc--HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH--cCChHHHHHhhhcC
Q 012413 370 AGIAEGREAIVEE--NG--IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR--EGGIPPLVALSQTG 437 (464)
Q Consensus 370 a~~~~~~~~i~~~--g~--i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~s~ 437 (464)
+..+++|..+.+. +. +..|+-++.+.+..-|.-++.+|.|.|.....+...+.+ .++++.|+--|..+
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence 9999999999973 35 788888888888888899999999999776666555554 37777777777654
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.11 Score=55.78 Aligned_cols=236 Identities=16% Similarity=0.138 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-Cc-hHHHHHhcCcHHHHHH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-EN-NKTLITNAGAIKSLVY 267 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~-~~~~i~~~g~i~~Lv~ 267 (464)
...||..|+-+|..|-+.+|+. +-..+....++.+|.+.+..+...+...+-.|++. ++ .+..+- -++..|..
T Consensus 161 ~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~--~avs~L~r 235 (938)
T KOG1077|consen 161 MDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP--LAVSRLSR 235 (938)
T ss_pred hHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH--HHHHHHHH
Confidence 4568888888888888776653 22346678899999998888888888888888874 32 222111 12222222
Q ss_pred HHcc-------------CCHHHHHHHHHHHHHhccccc--chhhhhccCChHHHHHHhhcC--Chh-----hHHHHHHHH
Q 012413 268 VLKT-------------GTETSKQNAACALMSLALIEE--NKSSIGACGAIPPLVSLLIYG--SSR-----GKKDALTTL 325 (464)
Q Consensus 268 lL~~-------------~~~~v~~~a~~aL~~Ls~~~~--~~~~i~~~g~i~~Li~lL~~~--~~~-----v~~~A~~aL 325 (464)
.... +.+=++...+..|.+.-..++ .+... ......++...+.+ +.. .+.+.+.-.
T Consensus 236 iv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFea 313 (938)
T KOG1077|consen 236 IVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEA 313 (938)
T ss_pred HHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHH
Confidence 2211 345566777777766522111 11111 11112222222211 111 222222223
Q ss_pred HHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHh-cCCHHHHHHH
Q 012413 326 YKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIE-DGSVKGKEFA 403 (464)
Q Consensus 326 ~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A 403 (464)
.+|+. .+...+.+.. ++..|-.+|.+....+|.-|+.-++.|+........+-.. ...++..|+ +.+..+|+.|
T Consensus 314 I~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrra 389 (938)
T KOG1077|consen 314 ISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRA 389 (938)
T ss_pred HHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHH
Confidence 33443 2333344444 6778888999999999999999999999776666666555 778888898 7899999999
Q ss_pred HHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHH
Q 012413 404 VLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKH 443 (464)
Q Consensus 404 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~ 443 (464)
+..|..+|.. ++...+ +.-|+..|.+.+..+|+
T Consensus 390 vDLLY~mcD~--~Nak~I-----V~elLqYL~tAd~sire 422 (938)
T KOG1077|consen 390 VDLLYAMCDV--SNAKQI-----VAELLQYLETADYSIRE 422 (938)
T ss_pred HHHHHHHhch--hhHHHH-----HHHHHHHHhhcchHHHH
Confidence 9999999953 344443 34455555555544443
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.07 Score=53.20 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=118.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--cCChHHHHHHhhcCChhhHHHHHHHHHHHhcC---cchHH
Q 012413 262 IKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--CGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL---KQNKE 336 (464)
Q Consensus 262 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~---~~~~~ 336 (464)
+...+..+.+.....|..++..+.++..+.-..+.+.+ ...+..+.+.++.+..+-+..|+.++.-++.. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 44456666777788999999999887644222222221 23467777788887776677788888877764 24455
Q ss_pred HHHHcCCHHHHHHhhcCCCH--HHHHHHHHHHHHHhC---C-HhhHHHHHhcCcHH--HHHHHHhc----------CCHH
Q 012413 337 RAVSAGAVRPLVGMLAGQGE--GMAEKAMVVLSLLAG---I-AEGREAIVEENGIA--ALVEAIED----------GSVK 398 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~~--~v~~~A~~aL~nLa~---~-~~~~~~i~~~g~i~--~Lv~lL~~----------~~~~ 398 (464)
.+++. ..|.|...+.+... .++..++.+|+-++. . .+...... ..+. ......+. +++.
T Consensus 125 ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 125 EIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 55553 78889999887653 445566666666552 1 11111000 1111 11111111 1356
Q ss_pred HHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 399 GKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 399 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
+...|+.+-+-|...-+.....-.-...++.|..+|.+++.+||..|-++|..|-+...
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 77777777777765544422221123469999999999999999999999998866443
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.35 Score=54.89 Aligned_cols=222 Identities=16% Similarity=0.150 Sum_probs=136.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHh--cCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-c-cchhhhhccCChHH
Q 012413 230 CSDPWTQEHSVTALLNLSLHENNKTLITN--AGAIKSLVYVLKTGTETSKQNAACALMSLALI-E-ENKSSIGACGAIPP 305 (464)
Q Consensus 230 ~~~~~v~~~A~~aL~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~-~~~~~i~~~g~i~~ 305 (464)
+.++.+|..+-.+|..++..+........ ......|..-+++.....+...+.+|..|-.. + +....+ ...||.
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHH
Confidence 35789999999999999887544333222 22344555556666777777777777766433 2 222221 223555
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHhc----Ccch--H-HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHH
Q 012413 306 LVSLLIYGSSRGKKDALTTLYKLCS----LKQN--K-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGRE 377 (464)
Q Consensus 306 Li~lL~~~~~~v~~~A~~aL~nL~~----~~~~--~-~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~ 377 (464)
++=.++..+...++.|..+|..|+. .... + ...++. .++.+...+..+...+....+-+++.+.. +...-.
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne-fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld 821 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE-FLSIISAGLVGDSTRVVASDIVAITHILQEFKNILD 821 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH-HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555577799999999999999984 1111 1 111111 22333322222222222222444444442 222222
Q ss_pred HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 378 AIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 378 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
...-.+.+..+.-+|.+.+.++...|+..+..++..-++....--..-.++.+..+++...-.++.+....|..|.+
T Consensus 822 ~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 822 DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 22223456666667778999999999999999998776665555555688999999988888999999988887754
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.36 Score=53.92 Aligned_cols=239 Identities=17% Similarity=0.116 Sum_probs=150.4
Q ss_pred HHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHc----cCC----HHHHHHHH
Q 012413 215 IGESGAVPALVPLLKC-----SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLK----TGT----ETSKQNAA 281 (464)
Q Consensus 215 i~~~g~i~~Ll~lL~~-----~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~v~~~a~ 281 (464)
+.+.|++..|+.++.+ ...+.....+..|...++-+.+|+.+.+.|+++.|+..|. .+. .++-+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 4468999999999876 2346677788888888888999999999999999998774 333 44555444
Q ss_pred HHHHHhccccc---c---hhhhh-------ccCChHHHHHHhhcC----ChhhHHHHHHHHHHHhcCcc-hHHHHHHcCC
Q 012413 282 CALMSLALIEE---N---KSSIG-------ACGAIPPLVSLLIYG----SSRGKKDALTTLYKLCSLKQ-NKERAVSAGA 343 (464)
Q Consensus 282 ~aL~~Ls~~~~---~---~~~i~-------~~g~i~~Li~lL~~~----~~~v~~~A~~aL~nL~~~~~-~~~~iv~~g~ 343 (464)
.++-.|..... . ..... +..-+..+++.+.+. ++.+....+++|-.|+...+ ..+.+++ -
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~ 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--H 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--H
Confidence 44444332211 1 11000 112256666666654 67888999999999999554 4444444 2
Q ss_pred HHHHHHhh--cCCCHHHHHHHHHHHHHHhCC-------HhhHHHHHhcCcHHHHHHHHhcC--------CHHHHH-----
Q 012413 344 VRPLVGML--AGQGEGMAEKAMVVLSLLAGI-------AEGREAIVEENGIAALVEAIEDG--------SVKGKE----- 401 (464)
Q Consensus 344 v~~Lv~lL--~~~~~~v~~~A~~aL~nLa~~-------~~~~~~i~~~g~i~~Lv~lL~~~--------~~~v~~----- 401 (464)
+.+.+++= +.....--..-+.+++.++.. ...++.+++.|++...+++|... +++.+.
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 22322221 111111112335666666531 34588999999999999999853 233333
Q ss_pred ---HHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhhcCC
Q 012413 402 ---FAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG-SVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 402 ---~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~~L~~~~ 456 (464)
.++..|.-|+...+..+.. ...++++.|..+=+.. ..++=..|.-+|..|++++
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 4777888888777666655 4456675555554443 4577778888888877754
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.12 Score=52.81 Aligned_cols=271 Identities=20% Similarity=0.139 Sum_probs=155.6
Q ss_pred chHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHH-HHhcCCCc
Q 012413 175 LQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTAL-LNLSLHEN 251 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL-~~La~~~~ 251 (464)
..+-|..+++.|.+ ....+|..++-.|..-+.+ +..+..+.+.|.++.++..+.. .+..+...++.++ .-++.+..
T Consensus 19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~ 97 (361)
T PF07814_consen 19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL 97 (361)
T ss_pred HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence 35677888888873 4567898998888888887 8888899999999999999955 3332444444444 44454555
Q ss_pred hHHHHHhcCcHHHHHHHHccC-----CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhh---------cCChhh
Q 012413 252 NKTLITNAGAIKSLVYVLKTG-----TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLI---------YGSSRG 317 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~---------~~~~~v 317 (464)
....+.+.+....++.++.-. .......-. .++++. . ...+..+-..+. .....-
T Consensus 98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~---~~lsk~---~-----~~~~~~~~~~~~~~~~~~~~~~~~lsp 166 (361)
T PF07814_consen 98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRK---KNLSKV---Q-----QKSRSLCKELLSSGSSWKSPKPPELSP 166 (361)
T ss_pred chhhhhchhHHHHHHHHhccccccccccchhhhhh---hhhhHH---H-----HHHHHHHHHHHhccccccccCCccccc
Confidence 555555667777778888711 000000000 000000 0 000111111110 011122
Q ss_pred HHHHHHHHHHHh--------------c-CcchHHHHHHcCCHHHHHHhhcC----CC------------HHHHHHHHHHH
Q 012413 318 KKDALTTLYKLC--------------S-LKQNKERAVSAGAVRPLVGMLAG----QG------------EGMAEKAMVVL 366 (464)
Q Consensus 318 ~~~A~~aL~nL~--------------~-~~~~~~~iv~~g~v~~Lv~lL~~----~~------------~~v~~~A~~aL 366 (464)
+..|+.++-.++ . .+-.++.+...|++..++..+.+ .. ......++.+|
T Consensus 167 ~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~IL 246 (361)
T PF07814_consen 167 QTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSIL 246 (361)
T ss_pred ccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHH
Confidence 333444444442 1 12246777888899999998862 11 11245577788
Q ss_pred HHHh-CCHhhHHHHHhc--CcH-HHHHHH---HhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc---
Q 012413 367 SLLA-GIAEGREAIVEE--NGI-AALVEA---IEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT--- 436 (464)
Q Consensus 367 ~nLa-~~~~~~~~i~~~--g~i-~~Lv~l---L~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s--- 436 (464)
.+.+ .+.+++..+... +.. ..+..+ +..........+++.+.|++.+++..+..+...+....+..+...
T Consensus 247 Es~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~ 326 (361)
T PF07814_consen 247 ESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFC 326 (361)
T ss_pred HHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcc
Confidence 8877 456677776653 222 222222 223345557889999999999998877776665443333222211
Q ss_pred -----------CCHHHHHHHHHHHHHhhcCCC
Q 012413 437 -----------GSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 437 -----------~~~~v~~~A~~aL~~L~~~~~ 457 (464)
..-+..--+.++|-||+++..
T Consensus 327 ~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 327 VLSLPNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccccccccchHHHHHHHhHHHheeeCc
Confidence 112777788888888887654
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.014 Score=59.88 Aligned_cols=263 Identities=16% Similarity=0.072 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC------CchHHHHHhcCcHH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH------ENNKTLITNAGAIK 263 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~------~~~~~~i~~~g~i~ 263 (464)
...+|.+|+++|..++.+-...+..+++ ....+...+.+.+|.++..++..|..+... |+..+.=...|.+-
T Consensus 268 ps~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw 345 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFW 345 (728)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHH
Confidence 3468999999999998874433333332 334445567778999999999999887431 22111101111010
Q ss_pred H------HHHHH-ccCCHHHHHHHHHHHHHhcccc-----cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC
Q 012413 264 S------LVYVL-KTGTETSKQNAACALMSLALIE-----ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL 331 (464)
Q Consensus 264 ~------Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~-----~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~ 331 (464)
. +-..+ .+..+..+..+|.++.+|...+ +.++.. .+-.+..+=.+.+.-++..|.++++-+.-+
T Consensus 346 ~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~----~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLH 421 (728)
T KOG4535|consen 346 TMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTL----CITFLLGCNDSKNRLVKAAASRALGVYVLH 421 (728)
T ss_pred HHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhh----hHHHHhcccchHHHHHHHHHHhhceeEEec
Confidence 0 00111 1234567888899999987532 212111 111111122233455777888888888887
Q ss_pred cchHHHH-HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-----CHh--hHHHHHhcCcHHHHHHHHh---cCCHHHH
Q 012413 332 KQNKERA-VSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-----IAE--GREAIVEENGIAALVEAIE---DGSVKGK 400 (464)
Q Consensus 332 ~~~~~~i-v~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-----~~~--~~~~i~~~g~i~~Lv~lL~---~~~~~v~ 400 (464)
+..+... .-+.+...+...|.+..-..+.+++|+++||+. .+. ....=+..-.+..+.+.-. ...++|+
T Consensus 422 p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~ 501 (728)
T KOG4535|consen 422 PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVK 501 (728)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 7654433 234566777777777778889999999999974 222 1111111112333333332 2468899
Q ss_pred HHHHHHHHHHhhcCHHh---HHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhcCCCC
Q 012413 401 EFAVLTLLQLCAESVKN---RGLLVREGGIPPLVALSQ-TGSVRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 401 ~~A~~aL~~L~~~~~~~---~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~~L~~~~~~ 458 (464)
.+|.++|+|+...-... .......|.+..+....- ...-.||.+|+-+++||-+++.-
T Consensus 502 ~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~ 563 (728)
T KOG4535|consen 502 SNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL 563 (728)
T ss_pred hHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccc
Confidence 99999999998531100 001112233333333222 23569999999999999988754
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.1 Score=49.43 Aligned_cols=147 Identities=16% Similarity=0.133 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCC--chHHHHHhcCcHHH
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-----SDPWTQEHSVTALLNLSLHE--NNKTLITNAGAIKS 264 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-----~~~~v~~~A~~aL~~La~~~--~~~~~i~~~g~i~~ 264 (464)
.-..+|+..|.-++.| ++.|..+.++..--.|-.+|.. ++..+|..++.+++.|.+.+ +....+...++||.
T Consensus 94 nRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3445777778888888 7788888887665555555543 56789999999999999854 44556678999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--------cCChHHH-HHHhhcCChhhHHHHHHHHHHHhcCcchH
Q 012413 265 LVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--------CGAIPPL-VSLLIYGSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 265 Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--------~g~i~~L-i~lL~~~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
.++.+..+++..+..|..++..+-.++.+-..+.. ...+..+ ..+.+.+++.+.+.+.++..+|+.++..+
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999998777654332222 1122333 34445578899999999999999988777
Q ss_pred HHHH
Q 012413 336 ERAV 339 (464)
Q Consensus 336 ~~iv 339 (464)
..+.
T Consensus 253 ~aL~ 256 (293)
T KOG3036|consen 253 AALR 256 (293)
T ss_pred HHHH
Confidence 6654
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.056 Score=53.63 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=115.4
Q ss_pred HHHHHHH-HhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CC-chH
Q 012413 177 PTVKICI-DGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HE-NNK 253 (464)
Q Consensus 177 ~~v~~Lv-~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~-~~~ 253 (464)
+.+..|+ ..+++.++.+|+.|+++|+-++--+.+.. ...++.+...++.+++.++..|+.++..+.. +. +..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4555555 67899999999999999999887654332 2457778888888899999999999999865 22 211
Q ss_pred HH-------HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC----ChhhHHHHH
Q 012413 254 TL-------ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG----SSRGKKDAL 322 (464)
Q Consensus 254 ~~-------i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~----~~~v~~~A~ 322 (464)
.. ......+..+.+.|.+.+++++..|+..++.|-....... ....+..|+-+--++ +..++..-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 11 1224577788889999999999999999999865432211 133455554443332 445555555
Q ss_pred HHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCC
Q 012413 323 TTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQG 355 (464)
Q Consensus 323 ~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~ 355 (464)
..+-..+......+..+.+..+|.+-.+.....
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 566666775543445555557777777775443
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.1 Score=56.03 Aligned_cols=259 Identities=12% Similarity=0.115 Sum_probs=154.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCC-CchHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLH-ENNKT 254 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~-~~~~~ 254 (464)
++..+.+-|.+.|+....-|+.+++++..- +.++.+. .-|+ ++|.+ ..+-++..|+.+|..|-+. ++.
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl-- 182 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL-- 182 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence 334444555677888888888888888653 2333322 2233 56665 3456899999999998774 442
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHhhc-------------CChhhHH
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLLIY-------------GSSRGKK 319 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL~~-------------~~~~v~~ 319 (464)
+-..+....++.+|.+.+..+...+...+-.|+.. ++.+..+.. ++..|...... +.|=+.-
T Consensus 183 -~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~v 259 (938)
T KOG1077|consen 183 -VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQV 259 (938)
T ss_pred -cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHHH
Confidence 12245778889999888888888888777777765 233332211 11222222111 1334555
Q ss_pred HHHHHHHHHhcCc--chHHHHHHcCCHHHHHHhhcCCC--HHH-----HHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHH
Q 012413 320 DALTTLYKLCSLK--QNKERAVSAGAVRPLVGMLAGQG--EGM-----AEKAMVVLSLLAG-IAEGREAIVEENGIAALV 389 (464)
Q Consensus 320 ~A~~aL~nL~~~~--~~~~~iv~~g~v~~Lv~lL~~~~--~~v-----~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv 389 (464)
.++++|.+.-... ..+.++.+ ++..++...+++. ..+ +...+--.-+|+. .+..-+.+. .++..|.
T Consensus 260 Kl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg 335 (938)
T KOG1077|consen 260 KLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLG 335 (938)
T ss_pred HHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHH
Confidence 6666666663322 23333332 3344444443211 111 2222222223332 122222222 3678888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhcC
Q 012413 390 EAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQ-TGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 390 ~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~~L~~~ 455 (464)
++|.+....+|.-|...++.|+... ...+.+... .+.++..|+ ..+..+|++|...|-.+++-
T Consensus 336 ~fls~rE~NiRYLaLEsm~~L~ss~-~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 336 QFLSHRETNIRYLALESMCKLASSE-FSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred HHhhcccccchhhhHHHHHHHHhcc-chHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 9999999999999999999999753 344455444 788888898 56889999999999998874
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.1 Score=53.45 Aligned_cols=100 Identities=10% Similarity=0.140 Sum_probs=85.9
Q ss_pred CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-C---CCHHHHHHHHHHHHHhcC
Q 012413 173 EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-C---SDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~---~~~~v~~~A~~aL~~La~ 248 (464)
..+...+..+++.-....+.+-..|+..+..+..+.|..-..+.+.|.++.++..+. . +..++....-.+|+.||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 455666666666666677889999999999999999999999999999999999888 4 567888888899999999
Q ss_pred CCchHHHHHhcCcHHHHHHHHccC
Q 012413 249 HENNKTLITNAGAIKSLVYVLKTG 272 (464)
Q Consensus 249 ~~~~~~~i~~~g~i~~Lv~lL~~~ 272 (464)
|..+.+.+.+.+.++.+++++.++
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCH
Confidence 999999999999999999888653
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.019 Score=46.95 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH--cCChHHHHHhhh
Q 012413 359 AEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR--EGGIPPLVALSQ 435 (464)
Q Consensus 359 ~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~ 435 (464)
+..++.+|..++. -+.. ..-.-...+++++.++.+++.++|..|+.+|.|++... +..+.. ..+.+.|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHc
Confidence 4556677777662 2222 11112457999999999999999999999999998543 333333 467788899999
Q ss_pred cCCHHHHHHHHHHHHHhh
Q 012413 436 TGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 436 s~~~~v~~~A~~aL~~L~ 453 (464)
+.++.||..|..+-+.|.
T Consensus 79 D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAAELLDRLLK 96 (97)
T ss_pred CCchhHHHHHHHHHHHhc
Confidence 999999998866555443
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.61 Score=46.98 Aligned_cols=205 Identities=10% Similarity=0.029 Sum_probs=152.1
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchh-hhhc--cCChHHHHHHhhc--CChhhHHHHHHHHHH
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKS-SIGA--CGAIPPLVSLLIY--GSSRGKKDALTTLYK 327 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~-~i~~--~g~i~~Li~lL~~--~~~~v~~~A~~aL~n 327 (464)
..+...+.+..|+..|..-+-+.|..++....++-... +.+. ..++ ..-.|.++..|-. +++++-..+-..|..
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 45567789999999999999999999999999987653 2322 1111 1222444444433 377888888889999
Q ss_pred HhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcC---cHHHHHHHHhcCCHHHHHHH
Q 012413 328 LCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEEN---GIAALVEAIEDGSVKGKEFA 403 (464)
Q Consensus 328 L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g---~i~~Lv~lL~~~~~~v~~~A 403 (464)
..+++.....+.....+..+...+..+.-++...|...+..+- .+......++... .+...-.+|.+++--.|..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 9999988888888888999999999999999999999999965 6776666666533 57788889999999999999
Q ss_pred HHHHHHHhhcCHHhH---HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCC
Q 012413 404 VLTLLQLCAESVKNR---GLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 404 ~~aL~~L~~~~~~~~---~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~ 458 (464)
+..|+.|-....... ..+.+..-+..++.+|++.+..+|..|-...+.+..+|..
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 999999986533222 2344556688899999999999999999999999887754
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.078 Score=58.60 Aligned_cols=338 Identities=14% Similarity=0.059 Sum_probs=186.4
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccC---------chhh
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQREN---------FSTE 165 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~---------~s~~ 165 (464)
....++-+.++..| ...||-.+..++..+..+-....... ....|.+ +....+.. -.-+
T Consensus 274 ~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~--------~~~~~~l---~~~~~d~~~~v~~~~~~~~~~ 342 (759)
T KOG0211|consen 274 KSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVV--------KSLTESL---VQAVEDGSWRVSYMVADKFSE 342 (759)
T ss_pred HhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhh--------hhhhHHH---HHHhcChhHHHHHHHhhhhhh
Confidence 45566677777777 67778778887777755533321111 0122222 22222111 0112
Q ss_pred HhhhcCC-CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 012413 166 IIESISP-EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKN-RSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTAL 243 (464)
Q Consensus 166 i~~~~~~-~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL 243 (464)
....+.+ ......++.....++....+++.+.+.-...++.. +..++..+.....+|.+-.+..+.++.++...+...
T Consensus 343 L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~ 422 (759)
T KOG0211|consen 343 LSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVI 422 (759)
T ss_pred HHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccc
Confidence 2222332 12233566667777888888888877777666543 233344555666788888899999999999888887
Q ss_pred HHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHH
Q 012413 244 LNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDAL 322 (464)
Q Consensus 244 ~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~ 322 (464)
..++---. +.. .-....|.++..+++..+.++.+..+.+..+-.. +.........--+|.++.+-.+....++.+..
T Consensus 423 ~~~~p~~~-k~~-ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail 500 (759)
T KOG0211|consen 423 TGLSPILP-KER-TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAIL 500 (759)
T ss_pred cccCccCC-cCc-CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHH
Confidence 77653211 000 0123567778888999999999999877655332 22222333344567777777766788888888
Q ss_pred HHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHH
Q 012413 323 TTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEF 402 (464)
Q Consensus 323 ~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 402 (464)
+.+..++.... ..+.+.-..+.+...+.+....++++|+..+..++..-. .+. .....++.++....+++-..|..
T Consensus 501 ~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w-~~~~~i~k~L~~~~q~~y~~R~t 576 (759)
T KOG0211|consen 501 EYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEW-ARLEEIPKLLAMDLQDNYLVRMT 576 (759)
T ss_pred HHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cch-hHHHhhHHHHHHhcCcccchhhH
Confidence 88888776443 222222233344444555556677777777777663111 111 11122344444443334444444
Q ss_pred HHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 403 AVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 403 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
.+.++.-|+. ..-..+..+..++.+..+..+..++||-+++..|..+.
T Consensus 577 ~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 577 TLFSIHELAE---VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred HHHHHHHHHH---HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 4444443331 11112233334555555555566666666665555443
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.067 Score=47.60 Aligned_cols=123 Identities=10% Similarity=0.123 Sum_probs=93.6
Q ss_pred hhhhccCChHHHHHHhhcCC------hhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHH
Q 012413 295 SSIGACGAIPPLVSLLIYGS------SRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQ--GEGMAEKAMVVL 366 (464)
Q Consensus 295 ~~i~~~g~i~~Li~lL~~~~------~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~v~~~A~~aL 366 (464)
..+...+|+..|++++.++. ......++.++..|..+.-..=..+...-+..++.++... +..+...++..|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45677889999999999875 3677788999999887654222233344566677777543 477899999999
Q ss_pred HHHhCCHhh-HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHh
Q 012413 367 SLLAGIAEG-REAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKN 417 (464)
Q Consensus 367 ~nLa~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~ 417 (464)
.+++.+... ...+.++=-++.|+.+|+..+.+++.+|...+-.|....++.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 999965554 556666667999999999999999999999998888665443
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.066 Score=47.62 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=97.9
Q ss_pred HHHHHHcCCHHHHHHhhcCCC------HHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcC--CHHHHHHHHHH
Q 012413 335 KERAVSAGAVRPLVGMLAGQG------EGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDG--SVKGKEFAVLT 406 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~------~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~a 406 (464)
...|+..||+..|+.++.+.. ......++.++..|..+....=..++...|..++.++... +..+.+.|...
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 356888999999999997755 3667778888888886544222455666788888888753 68899999999
Q ss_pred HHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 407 LLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 407 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
|-++...++.....+.++=-++.|+..|+.++++++.+|...+..|-
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999998888888888989999999999999999999998887664
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.053 Score=58.36 Aligned_cols=135 Identities=15% Similarity=0.092 Sum_probs=92.1
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcC
Q 012413 306 LVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGM-LAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEEN 383 (464)
Q Consensus 306 Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~l-L~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g 383 (464)
+-+++.+.++-+|....-+++--=.... ..++|..|+.. +.+.+.+|++.|..+|+-++. .+ .
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---------~ 588 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---------E 588 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccC------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh---------h
Confidence 3356666677777765554432111111 13467777777 678889999999999998884 33 3
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCCCCC
Q 012413 384 GIAALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPSS 462 (464)
Q Consensus 384 ~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~~~~ 462 (464)
.++..+++|. +.++.||.-|+.+|+--|... ..+. ++..|-.+..+...-||+.|..++.+|.-+..+..|+
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~p 661 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCP 661 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCc
Confidence 4566777776 568999999999999888653 1222 2333444445667799999999999998877776664
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.19 Score=50.16 Aligned_cols=189 Identities=20% Similarity=0.230 Sum_probs=112.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHh--cCcHHHHHHHHccCCHHHHHHHHHHHHHhccc---ccchhhh
Q 012413 223 ALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITN--AGAIKSLVYVLKTGTETSKQNAACALMSLALI---EENKSSI 297 (464)
Q Consensus 223 ~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~---~~~~~~i 297 (464)
-.+..+.+.....|..++..+.++..+......+.+ ...++.+.+.++.+..+-+..|+.++.-++.. .+....+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 344555556678888888888887654333333332 34678888889888776677777777776655 1233333
Q ss_pred hccCChHHHHHHhhcCC--hhhHHHHHHHHHHHhcC-cchHHHHHH-cCCHHHHH--HhhcCC----------CHHHHHH
Q 012413 298 GACGAIPPLVSLLIYGS--SRGKKDALTTLYKLCSL-KQNKERAVS-AGAVRPLV--GMLAGQ----------GEGMAEK 361 (464)
Q Consensus 298 ~~~g~i~~Li~lL~~~~--~~v~~~A~~aL~nL~~~-~~~~~~iv~-~g~v~~Lv--~lL~~~----------~~~v~~~ 361 (464)
.+ ...|.|...+.+.. ..+|..++.+|+-++.. ...-..+.+ ...+..+. ..++.. .+.+...
T Consensus 127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 33 45788888888763 45666677677766542 111111110 01222111 112211 2456666
Q ss_pred HHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 362 AMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 362 A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
|+.+-+-|.. -+...-.-.-...++.|+.+|.+.+..||..|..+|.-|.-
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6665555553 23221112224569999999999999999999999988753
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.11 Score=55.95 Aligned_cols=285 Identities=19% Similarity=0.158 Sum_probs=166.7
Q ss_pred hHHhhhcch-hhhhhhcccccCCCccccccCCC-Ccccc----chhhhhHHHhhhhhhhhccCCccc----------ccC
Q 012413 30 KIHRSIGRS-MRTIRSNLYQTDNSCSFVSVPDN-SGYLS----ENLTESVIDMRLGELASKTNDAKS----------VKS 93 (464)
Q Consensus 30 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 93 (464)
-|||+--.. |.-.+.-+=+....++. +-+. +-|+. -|-++.+.|-.+..|+..++|..- .-.
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~~~s~--y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mG 444 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAGEGSG--YKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMG 444 (929)
T ss_pred eeeccccchHHHHhhhhCCccCCCCCC--ccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhcc
Confidence 467743333 55555444442222222 3322 23332 345666899999999999855432 445
Q ss_pred CcchhHHHHHHhhhhhcccchhhhH-HHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCC
Q 012413 94 TISEDDYLNVSQAFSDFSVCSSDIS-GELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISP 172 (464)
Q Consensus 94 ~~~e~~~~~L~~ll~~~~~~r~~a~-~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~ 172 (464)
+-+++..+.|...+-.+..+.-.|+ -++|.+--.....++ +++++.. +.+.-++.+.+-+..
T Consensus 445 Sa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~ea----------------iedm~~Y-a~ETQHeki~RGl~v 507 (929)
T KOG2062|consen 445 SANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEA----------------IEDMLTY-AQETQHEKIIRGLAV 507 (929)
T ss_pred cccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHH----------------HHHHHHH-hhhhhHHHHHHHHHH
Confidence 7789999999998887666655443 334433111111111 1111211 223334555554432
Q ss_pred ----------CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHH
Q 012413 173 ----------EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPL-LKCSDPWTQEHSVT 241 (464)
Q Consensus 173 ----------~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~l-L~~~~~~v~~~A~~ 241 (464)
++..+.| -+++.+.+|-.|...+..+..---. -...++|..|+.. ..+.+.+||+.|..
T Consensus 508 GiaL~~ygrqe~Ad~lI---~el~~dkdpilR~~Gm~t~alAy~G-------Tgnnkair~lLh~aVsD~nDDVrRaAVi 577 (929)
T KOG2062|consen 508 GIALVVYGRQEDADPLI---KELLRDKDPILRYGGMYTLALAYVG-------TGNNKAIRRLLHVAVSDVNDDVRRAAVI 577 (929)
T ss_pred hHHHHHhhhhhhhHHHH---HHHhcCCchhhhhhhHHHHHHHHhc-------cCchhhHHHhhcccccccchHHHHHHHH
Confidence 2222333 2455677888888887766322111 1145778888877 66688999999999
Q ss_pred HHHHhcCCCchHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHH
Q 012413 242 ALLNLSLHENNKTLITNAGAIKSLVYVLKTG-TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKD 320 (464)
Q Consensus 242 aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~ 320 (464)
+|+-++..+. ...|..+.+|... ++.||.-++-+|+--|....++. +|..|-.|..++..-||.-
T Consensus 578 alGFVl~~dp--------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai~lLepl~~D~~~fVRQg 643 (929)
T KOG2062|consen 578 ALGFVLFRDP--------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AINLLEPLTSDPVDFVRQG 643 (929)
T ss_pred HheeeEecCh--------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HHHHHhhhhcChHHHHHHH
Confidence 9999876433 2567778888665 89999999999998877665554 3455555666777788888
Q ss_pred HHHHHHHHhc-C-cchHHHHHHcCCHHHHHHhhcCCCHHHH
Q 012413 321 ALTTLYKLCS-L-KQNKERAVSAGAVRPLVGMLAGQGEGMA 359 (464)
Q Consensus 321 A~~aL~nL~~-~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~ 359 (464)
|+-+++-+.. + +..+.++ .|..+.+.+++.+.+++..
T Consensus 644 AlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 644 ALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred HHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHHH
Confidence 8888877644 2 2222111 1233456666666655543
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.084 Score=53.12 Aligned_cols=196 Identities=12% Similarity=0.085 Sum_probs=147.0
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHH-----HHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRV-----LIGE--SGAVPALVPLLKCSDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~-----~i~~--~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~ 248 (464)
.+++..|+..|..-+-+.|..++.+..++.......+. .+.. ...+..|+.-. +++++-..+...|...++
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 36788889999999999999999999888877544432 2221 12233333333 567778888888999999
Q ss_pred CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHH-hcccccchhhhhcc---CChHHHHHHhhcCChhhHHHHHHH
Q 012413 249 HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMS-LALIEENKSSIGAC---GAIPPLVSLLIYGSSRGKKDALTT 324 (464)
Q Consensus 249 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~-Ls~~~~~~~~i~~~---g~i~~Li~lL~~~~~~v~~~A~~a 324 (464)
++...+.+.....+..+....+.++-++..-|..++.. |..|.......... ..+...-.||.+++--++++++..
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 98888888888889899999999999999999999988 45555444444332 356677889999999999999999
Q ss_pred HHHHhcCcchHHHHHH----cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 325 LYKLCSLKQNKERAVS----AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 325 L~nL~~~~~~~~~iv~----~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
|+.|-.++.|...+.. ..-+..++.+|++....++.+|..+..-...+|
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999999988776543 446788899999999999999999999888654
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.011 Score=49.91 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=61.8
Q ss_pred hHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 012413 176 QPTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLS 247 (464)
Q Consensus 176 ~~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La 247 (464)
-.+++.|++.|. +.++.+..-|+.=|+.++++.|..|..+.+.|+=..++.++.+++++|+..|+.++..+-
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 468889999994 567888888999999999999999999888999999999999999999999999987653
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.38 Score=49.87 Aligned_cols=260 Identities=12% Similarity=-0.003 Sum_probs=146.3
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHh----hcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPL----LKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIK 263 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~l----L~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~ 263 (464)
+..+..+..-...+..+.+... +-+.|.+.-++.. ..+++..++..|+..|++.+...+.+..=...-.+.
T Consensus 228 s~~~~~ritd~Af~ael~~~~~-----l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ld 302 (533)
T KOG2032|consen 228 SEKENGRITDIAFFAELKRPKE-----LDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLD 302 (533)
T ss_pred hhcccchHHHHHHHHHHhCccc-----ccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHH
Confidence 3344445555555555555422 2234555444433 345777899999999999998733333323334566
Q ss_pred HHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhh-hccCChHHHHHHhhcCChhhHHHHHHHHHHHhc--CcchHHHHH
Q 012413 264 SLVYVLKT-GTETSKQNAACALMSLALIEENKSSI-GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS--LKQNKERAV 339 (464)
Q Consensus 264 ~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i-~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~--~~~~~~~iv 339 (464)
.++.-|-+ .+.+|+..+..+|.-+.....+.+.- .-..+.-.+..+..+.++++|.+|..+++.|+. +...++.+.
T Consensus 303 aii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Ft 382 (533)
T KOG2032|consen 303 AIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFT 382 (533)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhH
Confidence 66665555 46889988888888765432222210 011223456678889999999999999999988 334455555
Q ss_pred H--cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-----------H---hh----HHHHHhc------CcHHHHHHHH-
Q 012413 340 S--AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-----------A---EG----REAIVEE------NGIAALVEAI- 392 (464)
Q Consensus 340 ~--~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-----------~---~~----~~~i~~~------g~i~~Lv~lL- 392 (464)
+ .+...+++-.|.++.+.+.. |+......+.- + +. -+.+.+. ..-+.+..++
T Consensus 383 e~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~ 461 (533)
T KOG2032|consen 383 EQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLL 461 (533)
T ss_pred HHHHhccccceeeeCCCChHHHH-HHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 3 33445566666777665433 33333333221 1 00 0111111 1111122222
Q ss_pred -------hcCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 393 -------EDGSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 393 -------~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
++..+.++..|...-.+..-+. +..+...-..-....|..+.+.+-++++..|..|+..+.
T Consensus 462 t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 462 TEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 2234566666666666655432 223333333345566777778889999999999998765
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.48 Score=48.60 Aligned_cols=99 Identities=10% Similarity=0.179 Sum_probs=80.8
Q ss_pred HHh-cCChHHHHHhhcC---CCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHc-c---CCHHHHHHHHHHHH
Q 012413 215 IGE-SGAVPALVPLLKC---SDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLK-T---GTETSKQNAACALM 285 (464)
Q Consensus 215 i~~-~g~i~~Ll~lL~~---~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~-~---~~~~v~~~a~~aL~ 285 (464)
+.+ ......|...+++ .-+.+-..|+.++..+..+ |-.-..+.+.|.++.+++.+. . ++.++....-.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 344 3445556666666 4578999999999999986 455677889999999999988 4 36788888899999
Q ss_pred HhcccccchhhhhccCChHHHHHHhhcC
Q 012413 286 SLALIEENKSSIGACGAIPPLVSLLIYG 313 (464)
Q Consensus 286 ~Ls~~~~~~~~i~~~g~i~~Li~lL~~~ 313 (464)
.||.+..+.+.+.+.+.++.+++.+.++
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 9999999999999999999999988764
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0078 Score=61.58 Aligned_cols=190 Identities=15% Similarity=0.032 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHH-HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVL-IGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLV 266 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~-i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv 266 (464)
+.+.-++.+|.+++.-+.-| +-.|.. ..-..+...++..|.+.....|.+++|+++||+.
T Consensus 402 ~~~~lv~~aA~Ra~~VyVLH-p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITd------------------ 462 (728)
T KOG4535|consen 402 SKNRLVKAAASRALGVYVLH-PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITD------------------ 462 (728)
T ss_pred hHHHHHHHHHHhhceeEEec-cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHH------------------
Confidence 34445666677776666655 322222 2223445555556666566677777777777641
Q ss_pred HHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHh---hcCChhhHHHHHHHHHHHhcCcc----hHHHHH
Q 012413 267 YVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL---IYGSSRGKKDALTTLYKLCSLKQ----NKERAV 339 (464)
Q Consensus 267 ~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL---~~~~~~v~~~A~~aL~nL~~~~~----~~~~iv 339 (464)
.|..+.+.++..++.+.+-+ +..++++- .-.+..|+.++.++|+|+...-+ ......
T Consensus 463 -AL~~~~Ps~~s~~eR~sg~l---------------l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~ 526 (728)
T KOG4535|consen 463 -ALIVNMPTPDSFQERFSGLL---------------LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEI 526 (728)
T ss_pred -HHHcCCCCchHHHHHHHHHH---------------HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHH
Confidence 11111122222222222221 11122111 11245677788888888765211 111112
Q ss_pred HcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhCCHhhHH--HHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhh
Q 012413 340 SAGAVRPLVGM-LAGQGEGMAEKAMVVLSLLAGIAEGRE--AIVEENGIAALVEAIED-GSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 340 ~~g~v~~Lv~l-L~~~~~~v~~~A~~aL~nLa~~~~~~~--~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~ 412 (464)
..|.+..++.. .......|+.+|+.+++||-.++...- .=....+.+.|..++.+ .+.++|.+|+.+|..-+.
T Consensus 527 ~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 527 IEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 22233333222 233456789999999999998765311 11122367888888875 678999999999977654
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.41 Score=51.66 Aligned_cols=129 Identities=15% Similarity=0.138 Sum_probs=90.2
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
+.+.+..+++...+.+..||...+..|..+.....+.-+.+ -.+....+..-|.+..|.||..|+.+|+.+-.++..-
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~v-fn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDV-FNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHH-HHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 35788888999999999999999999999988644333333 3366777777788889999999999999997543210
Q ss_pred HHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHH
Q 012413 255 LITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKD 320 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~ 320 (464)
+..++..+..+++. ++++||..|+ .+|+.+ ....|.+++..++-+...|+.
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaL---snI~vd---------nsTlp~IveRarDV~~anRrl 212 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVD---------NSTLPCIVERARDVSGANRRL 212 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHH---HhhccC---------cccchhHHHHhhhhhHHHHHH
Confidence 23466777788865 6889998754 455433 334555555555555444443
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.064 Score=51.40 Aligned_cols=148 Identities=18% Similarity=0.145 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCC-----CHHHHHHHHHHHHHhcCC--CchHHHHHhcCcHHH
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS-----DPWTQEHSVTALLNLSLH--ENNKTLITNAGAIKS 264 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~-----~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~ 264 (464)
.-..+|+..|..+|.| ++.|..+.++...-.|...|+.. ...+|...+.+++.|.+. ++....+...+.+|.
T Consensus 65 nRVcnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 65 NRVCNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 3445677788888887 88899999988887788888653 357899999999999984 456667778999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--------cCChHHHHH-HhhcCChhhHHHHHHHHHHHhcCcchH
Q 012413 265 LVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--------CGAIPPLVS-LLIYGSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 265 Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--------~g~i~~Li~-lL~~~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
.++.+..+++-.|..|...+..+-.++.+-..+.. ..++..++. +..++++.+.+...++-..|+.++..+
T Consensus 144 cLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar 223 (262)
T PF04078_consen 144 CLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAR 223 (262)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHH
Confidence 99999999999999999999998777655333322 123334443 345579999999999999999999988
Q ss_pred HHHHH
Q 012413 336 ERAVS 340 (464)
Q Consensus 336 ~~iv~ 340 (464)
+.+..
T Consensus 224 ~aL~~ 228 (262)
T PF04078_consen 224 EALRQ 228 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.036 Score=51.22 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCchHHHHHh----------------cCcHHHHHHHHcc------CCHHHHHHHHHHHHHhc
Q 012413 231 SDPWTQEHSVTALLNLSLHENNKTLITN----------------AGAIKSLVYVLKT------GTETSKQNAACALMSLA 288 (464)
Q Consensus 231 ~~~~v~~~A~~aL~~La~~~~~~~~i~~----------------~g~i~~Lv~lL~~------~~~~v~~~a~~aL~~Ls 288 (464)
++......++..|.||++.+.....+.+ ..++..|+.++.. ...+-....+.++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 3444566788899999988777664443 2256777777766 23455678899999999
Q ss_pred ccccchhhhhcc--CC--hHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHc---CCHHHHHHhhc
Q 012413 289 LIEENKSSIGAC--GA--IPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSA---GAVRPLVGMLA 352 (464)
Q Consensus 289 ~~~~~~~~i~~~--g~--i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~---g~v~~Lv~lL~ 352 (464)
..+++|..+.+. +. +..|+..+.+.+..-|.-++++|.|.|-..+....+... +.+|.|+--|.
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999999999873 34 677777777787777778999999999988877777653 45555555554
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.22 Score=51.87 Aligned_cols=191 Identities=14% Similarity=0.088 Sum_probs=120.1
Q ss_pred ChHHHHHhhcC-CCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhcccccchhh
Q 012413 220 AVPALVPLLKC-SDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVL-KTGTETSKQNAACALMSLALIEENKSS 296 (464)
Q Consensus 220 ~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~~~~ 296 (464)
.+..++.+..+ .++..+..++.+++.+... ++.. . . ...+..+...+ ...+...+..+..++..+++.--.|..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~-l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-D-L-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-h-H-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 45555555444 5688888888888888753 1111 0 0 12233333333 233444555555555444322111111
Q ss_pred hhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cch-------------HHHHHHcCCHHHHHHhhcCCCHHHHHHH
Q 012413 297 IGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQN-------------KERAVSAGAVRPLVGMLAGQGEGMAEKA 362 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~-------------~~~iv~~g~v~~Lv~lL~~~~~~v~~~A 362 (464)
-.....+..|+++|.+ +.+...++.++.-|... ++. ++++... .+|.|++..+..+...+...
T Consensus 267 ~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 267 PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhcChhhHHHH
Confidence 1112235677777776 67788888998888876 331 2334333 78888888888777788889
Q ss_pred HHHHHHHhCCHhhHHHHHh-cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 363 MVVLSLLAGIAEGREAIVE-ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 363 ~~aL~nLa~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
+.+|.+|..+-+..-.+-+ ...+|.|++.|..++.+++..++.+|..+..+.++
T Consensus 344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 9999999975443323333 45899999999999999999999999999977643
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.47 Score=52.95 Aligned_cols=286 Identities=14% Similarity=0.057 Sum_probs=166.2
Q ss_pred CCCchHHHHHHHHhcC------C--CCHHHHHHHHHHHHHHhcc---CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHH
Q 012413 172 PEDLQPTVKICIDGLQ------S--SSVAIKRSAAAKLRLLAKN---RSDNRVLIGESGAVPALVPLLKCSDPWTQEHSV 240 (464)
Q Consensus 172 ~~~~~~~v~~Lv~~L~------s--~~~~vr~~A~~~L~~La~~---~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~ 240 (464)
.+..++.++.+++-|. . .++.-+..|+.+++.++.- ....+ ..++.=.++.+...++++---+|..||
T Consensus 405 ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac 483 (1010)
T KOG1991|consen 405 KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARAC 483 (1010)
T ss_pred hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHH
Confidence 3455678888887776 2 3566777788888888721 11111 122334466667778888889999999
Q ss_pred HHHHHhcCCC-chHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhccccc-chhhhhc--cCChHHHHHHhhcCCh
Q 012413 241 TALLNLSLHE-NNKTLITNAGAIKSLVYVLK-TGTETSKQNAACALMSLALIEE-NKSSIGA--CGAIPPLVSLLIYGSS 315 (464)
Q Consensus 241 ~aL~~La~~~-~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~--~g~i~~Li~lL~~~~~ 315 (464)
|++..++.-+ .....+ ..++....+.|. +.+-.|+..|+.||..+-.+.+ ....+.. .+.+..|+.+.+..+.
T Consensus 484 ~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En 561 (1010)
T KOG1991|consen 484 WVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN 561 (1010)
T ss_pred HHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch
Confidence 9999998421 221221 236677777777 7778999999999998776643 3333322 3344455555554433
Q ss_pred hhHHHHHHH-HHHHhc-CcchHHHHHHcCCHHHHHHhhcC---CCHHH---HHHHHHHHHHHhC---CHhhHHHHH-h--
Q 012413 316 RGKKDALTT-LYKLCS-LKQNKERAVSAGAVRPLVGMLAG---QGEGM---AEKAMVVLSLLAG---IAEGREAIV-E-- 381 (464)
Q Consensus 316 ~v~~~A~~a-L~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~---~~~~v---~~~A~~aL~nLa~---~~~~~~~i~-~-- 381 (464)
+.....+.. ++..+. -.+....+. ........+++.. .++.. ...|+++|..+.. .-++...+. +
T Consensus 562 d~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le 640 (1010)
T KOG1991|consen 562 DDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLE 640 (1010)
T ss_pred hHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 333322222 222211 001111111 1133344455542 22223 3444555554432 122333332 2
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCCCC
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPS 461 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~~~ 461 (464)
.-..+.+-..+++.-.++-+.+...+..++...++....+|+ ..+.+.+.++...-+--....-+|.++.-++...=.
T Consensus 641 ~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~ 718 (1010)
T KOG1991|consen 641 PIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLL 718 (1010)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhh
Confidence 335666666677777889999999999988877665556654 677777777777766677777777777766665444
Q ss_pred CC
Q 012413 462 SS 463 (464)
Q Consensus 462 ~~ 463 (464)
++
T Consensus 719 s~ 720 (1010)
T KOG1991|consen 719 SN 720 (1010)
T ss_pred cc
Confidence 43
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.41 Score=51.60 Aligned_cols=104 Identities=18% Similarity=0.103 Sum_probs=76.6
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhh
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG 298 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~ 298 (464)
|.+..|+.-.++.+..||...+..|..+..........+-.+....+..-|.+..+.||.+|..+|..+-.++.. -
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d----e 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD----E 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----C
Confidence 667777777888999999999999998886433333334456677788888888999999999999998643211 1
Q ss_pred ccCChHHHHHHhhc-CChhhHHHHHHHHH
Q 012413 299 ACGAIPPLVSLLIY-GSSRGKKDALTTLY 326 (464)
Q Consensus 299 ~~g~i~~Li~lL~~-~~~~v~~~A~~aL~ 326 (464)
+..+...+..++++ ++++||+.|+..+.
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 13356777788775 58999998876544
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.16 Score=48.90 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc
Q 012413 359 AEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 359 ~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s 436 (464)
...|+.+|--++ -++..+..+.+..++..|+.+|. ...+.++..++.+|..+..+++.+...+.+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 555777888888 68999999999999999999995 5679999999999999999999999999999999999999988
Q ss_pred C--CHHHHHHHHHHHHHhhc
Q 012413 437 G--SVRAKHKAETLLGYLRE 454 (464)
Q Consensus 437 ~--~~~v~~~A~~aL~~L~~ 454 (464)
. +.++|.+..+-|...--
T Consensus 188 ~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccHHHhHHHHHHHHHHHc
Confidence 6 56999998888776543
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.17 Score=55.93 Aligned_cols=269 Identities=16% Similarity=0.116 Sum_probs=171.6
Q ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 177 PTVKICIDGL-QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L-~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
.-+......+ ++..+.||..++.-++++++--+. .....+.++.+.++..++...++..|...+.++...-+...
T Consensus 236 ~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~- 311 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD- 311 (759)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-
Confidence 3344444444 456788999999999998876333 56678999999999999989999999998888865311110
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC--cc
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL--KQ 333 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~--~~ 333 (464)
=...-..+.++....+++..++...+.....|...=+- ......-+++...++++....++.+++.-...++.. .+
T Consensus 312 d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 312 DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence 12234778899999999999998888888877543111 233344577888888888888888877777777663 23
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
....+.....+|.+..++.+....++...+..+.++.- .+. .. .-.-..+.++..+++..+.++.+-.+.+..+-.
T Consensus 390 ~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~-ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~ 466 (759)
T KOG0211|consen 390 CYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ER-TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE 466 (759)
T ss_pred cccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--Cc-CccccChhhhhhcchhhHHHHHhhHHHHHHHHh
Confidence 44555666678999999988888888877777766642 110 00 001234555555566666666666665544433
Q ss_pred cCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 413 ESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 413 ~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
..+...........++.+..+-.....+++....+.+..++.
T Consensus 467 v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~ 508 (759)
T KOG0211|consen 467 VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL 508 (759)
T ss_pred ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 333333333344445555555544445555555555554443
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.024 Score=47.91 Aligned_cols=71 Identities=10% Similarity=0.103 Sum_probs=62.1
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.+..|+++|. +.++.+..-|+.=|+.++.+-|..+..+.+.|+-..+++++.+++++||..|..++..+.-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6889999994 5578888999999999999999999999999999999999999999999999999987754
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.37 Score=52.96 Aligned_cols=219 Identities=14% Similarity=0.078 Sum_probs=139.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCCh
Q 012413 224 LVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAI 303 (464)
Q Consensus 224 Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i 303 (464)
-+..+.++.+.++..++.-|..+....+-+..+...+.+...+..|++.++.+=.+|...+..||.. .....+
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il 804 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDIL 804 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhH
Confidence 3444555667789999999999998777777888899999999999999999999999877777543 445567
Q ss_pred HHHHHHhhcC----ChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHh--hH
Q 012413 304 PPLVSLLIYG----SSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE--GR 376 (464)
Q Consensus 304 ~~Li~lL~~~----~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~--~~ 376 (464)
|.|.+--.+. .++.+...-.++.++.. -.+......+ -.+...+..+++++...+.-++..+++||..-. ..
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vs 883 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVS 883 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhh
Confidence 8777743322 23445555567777655 2333333333 244555566677777779999999999985322 11
Q ss_pred HHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc---CChHHHHHhhhcC-CHHHHHHHHHHHHH
Q 012413 377 EAIVEENGIAALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVRE---GGIPPLVALSQTG-SVRAKHKAETLLGY 451 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~---g~i~~Lv~lL~s~-~~~v~~~A~~aL~~ 451 (464)
..+. .++.-++.+.+ +++..+|+.|+..+..+-......-..+... .....+....+.. ++.++..|..++..
T Consensus 884 d~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 884 DFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred HHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 2222 23444555554 6788999999999998876432211112111 2223333333333 45677777766654
Q ss_pred h
Q 012413 452 L 452 (464)
Q Consensus 452 L 452 (464)
+
T Consensus 962 i 962 (982)
T KOG4653|consen 962 I 962 (982)
T ss_pred H
Confidence 4
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.52 Score=50.36 Aligned_cols=131 Identities=24% Similarity=0.233 Sum_probs=87.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHH
Q 012413 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLIT 257 (464)
Q Consensus 179 v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~ 257 (464)
-..++..-+ .+..++.-|+..+....++=|.+.+ .++..++.|.++++..||..|...|-.+|++ ++....
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-- 96 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-- 96 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence 333444444 5788999999999999998777655 4788899999999999999999999999986 555555
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhh---cCChhhHHHHHHHHHH
Q 012413 258 NAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLI---YGSSRGKKDALTTLYK 327 (464)
Q Consensus 258 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~---~~~~~v~~~A~~aL~n 327 (464)
.+..|+++|+++++.-...+-.+|..|-..+ ..+.+..|+.-+. .++..+|..++..|..
T Consensus 97 ---vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 97 ---VADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp ---HHHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 4567999999998776666666666653221 1334555665555 5677788888877643
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=2.7 Score=50.88 Aligned_cols=336 Identities=13% Similarity=0.032 Sum_probs=185.7
Q ss_pred cccccCCcchhHHHHHHhhhhh-cc----cchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCc
Q 012413 88 AKSVKSTISEDDYLNVSQAFSD-FS----VCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENF 162 (464)
Q Consensus 88 ~~~~~~~~~e~~~~~L~~ll~~-~~----~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~ 162 (464)
||.+.++-.|+++.++..-+-. .. +--.+.+..|+-.+..|+...+-..+ ..+ ...+..++
T Consensus 131 sk~~~~~~c~~a~a~i~~~~~~~~~~~~~l~~~~~~lllNafSKw~~~~~c~~aa----------~~l---a~~~~~~d- 196 (2710)
T PRK14707 131 SKNLDSGRCERAVARLARHLRREDKARQTLNAQNISLALNAFSKWSDNPDCQAVA----------PRF---AALVASDD- 196 (2710)
T ss_pred hcCCCchHHHHHHHHHHHHhccccchhhhhccccHHHHHHHhhcCCCCchHHHHH----------HHH---HHHhcCCh-
Confidence 4455555566666666554421 11 22234555555555555555443311 111 22222221
Q ss_pred hhhHhhhcCCCCchHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CC-HHHHHHH
Q 012413 163 STEIIESISPEDLQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SD-PWTQEHS 239 (464)
Q Consensus 163 s~~i~~~~~~~~~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~-~~v~~~A 239 (464)
..++.+. ...|..++..++. ++..-...|+..|.....+....+..+ +...|-..++.|.. ++ +.....+
T Consensus 197 --~~~~~~~----~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~ 269 (2710)
T PRK14707 197 --RLRSAMD----AQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKWADTPVCAAAA 269 (2710)
T ss_pred --hhhcccc----hHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHH
Confidence 2333332 2344444555543 443444455666644433436666555 44445555555554 44 4555555
Q ss_pred HHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHH-hcccccchhhhhccCChHHHHHHhhc-CChhh
Q 012413 240 VTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMS-LALIEENKSSIGACGAIPPLVSLLIY-GSSRG 317 (464)
Q Consensus 240 ~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~-Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v 317 (464)
..+=..++.++..++.+-..+.-..|-.+-+=++..+-..|+..|.. |..+++.++.+ +.-.+..+++-|.. ++..+
T Consensus 270 ~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~ 348 (2710)
T PRK14707 270 SALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPV 348 (2710)
T ss_pred HHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchh
Confidence 55556677666666665544444444444455677777777666654 55555555433 33345555555554 44444
Q ss_pred HH-HHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHH-HhCCHhhHHHHHhcCcHHHHHHHHhcC
Q 012413 318 KK-DALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSL-LAGIAEGREAIVEENGIAALVEAIEDG 395 (464)
Q Consensus 318 ~~-~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~n-La~~~~~~~~i~~~g~i~~Lv~lL~~~ 395 (464)
.+ .|...-..|+.+++.++.+--.|+-..|-.+-+-++..+-..|+..|.. |....+.++.+-..|+-..|=-+-+=+
T Consensus 349 C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWP 428 (2710)
T PRK14707 349 CAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWP 428 (2710)
T ss_pred HHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCC
Confidence 44 4444445566666666665545444444444466777776666665554 446677777776666555554444557
Q ss_pred CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHH
Q 012413 396 SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKA 445 (464)
Q Consensus 396 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A 445 (464)
+..+...++..|..-..++.+.+..+--.++...|-.+.+=++..+-..|
T Consensus 429 d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~a 478 (2710)
T PRK14707 429 DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQT 478 (2710)
T ss_pred cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHH
Confidence 88899999999988888888888877767766666666665654444333
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.092 Score=40.46 Aligned_cols=66 Identities=20% Similarity=0.163 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhCCHhhHHHHHhcC
Q 012413 318 KKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAGIAEGREAIVEEN 383 (464)
Q Consensus 318 ~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g 383 (464)
++.|++++++++..+.....+.+.+.++.++++... +-..+|--|..+|+-++...++++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 578999999999999888888888999999999864 446789999999999999999998888766
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.48 Score=46.96 Aligned_cols=168 Identities=17% Similarity=0.154 Sum_probs=111.5
Q ss_pred CChHHHH-HhhcCCCHHHHHHHHHHHHHhcCCCc-hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc--cch
Q 012413 219 GAVPALV-PLLKCSDPWTQEHSVTALLNLSLHEN-NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE--ENK 294 (464)
Q Consensus 219 g~i~~Ll-~lL~~~~~~v~~~A~~aL~~La~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~--~~~ 294 (464)
+.+..|+ +.+++.++.+|+.|..+|+-.+.-+. .. ...++.+...++.++..++..|+.++..+.... +.-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4454444 78899999999999999999887432 21 235778888888889999999999999977531 111
Q ss_pred h-------hhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCC----CHHHHHHHH
Q 012413 295 S-------SIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQ----GEGMAEKAM 363 (464)
Q Consensus 295 ~-------~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~----~~~v~~~A~ 363 (464)
. .......+..+.+.+.+.+++++..|+..++.|.-+..... ....+..|+-+-.++ +..++.--.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 1 11223456677788888899999999999999876543221 122333443333222 345566556
Q ss_pred HHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc
Q 012413 364 VVLSLLAGIAEGREAIVEENGIAALVEAIED 394 (464)
Q Consensus 364 ~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~ 394 (464)
..+-..+......+..+....++.+-.+.+.
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 6677777554444455556777777777764
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.73 Score=50.78 Aligned_cols=221 Identities=17% Similarity=0.147 Sum_probs=135.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHh
Q 012413 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITN 258 (464)
Q Consensus 179 v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~ 258 (464)
...-+..+.++.+.+|-.|+..|+.+..+. +....+...+++...+..|++.|+.+-.+|...+..|+.- ..
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~ 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YP 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cc
Confidence 334455667788889999999999999875 4445666789999999999999999999999977777642 22
Q ss_pred cCcHHHHHHHHccC----CHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 259 AGAIKSLVYVLKTG----TETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 259 ~g~i~~Lv~lL~~~----~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
...+|.|..--.+. ..+.+...-.++.++... .+......+ -.+...+..+++++...|..++..+++||.-..
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 34666666633221 123444444566555332 111111100 123333444556677789999999999988322
Q ss_pred --hHHHHHHcCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhC-CHhhHHHHHh---cCcHHHHHHHHhc-CCHHHHHHHHH
Q 012413 334 --NKERAVSAGAVRPLVGMLAGQG-EGMAEKAMVVLSLLAG-IAEGREAIVE---ENGIAALVEAIED-GSVKGKEFAVL 405 (464)
Q Consensus 334 --~~~~iv~~g~v~~Lv~lL~~~~-~~v~~~A~~aL~nLa~-~~~~~~~i~~---~g~i~~Lv~lL~~-~~~~v~~~A~~ 405 (464)
..+.+.+ .+..++.+.+.++ ..+++.|+..+..+-. ..+..-.|.+ -+....+..+... .++.++..|..
T Consensus 880 ~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql 957 (982)
T KOG4653|consen 880 FQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL 957 (982)
T ss_pred hhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 2233333 5666666666544 5678888888888763 2322222222 2344555555553 45667777777
Q ss_pred HHHHH
Q 012413 406 TLLQL 410 (464)
Q Consensus 406 aL~~L 410 (464)
++-.+
T Consensus 958 ~leei 962 (982)
T KOG4653|consen 958 CLEEI 962 (982)
T ss_pred HHHHH
Confidence 76554
|
|
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.42 Score=53.54 Aligned_cols=258 Identities=18% Similarity=0.161 Sum_probs=164.3
Q ss_pred HHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCC---
Q 012413 197 AAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGT--- 273 (464)
Q Consensus 197 A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~--- 273 (464)
...+|..+-+++.++...+.++.++..++..+-++ +-|...+..+..|...+.- + +....+-.|+..|+++-
T Consensus 662 gwDcLisllKnnteNqklFreanGvklilpflind--ehRSslLrivscLitvdpk-q--vhhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 662 GWDCLISLLKNNTENQKLFREANGVKLILPFLIND--EHRSSLLRIVSCLITVDPK-Q--VHHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred hHHHHHHHHhccchhhHHHHhhcCceEEEEeeech--HHHHHHHHHHHHHhccCcc-c--ccHHHHHHHHHHHHhcceec
Confidence 35678888899999999999999999998888443 3455555666555442211 0 12335667888888731
Q ss_pred ---------HHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhc----------CChhhHHHHHHHHHHH-----
Q 012413 274 ---------ETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIY----------GSSRGKKDALTTLYKL----- 328 (464)
Q Consensus 274 ---------~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~----------~~~~v~~~A~~aL~nL----- 328 (464)
..+.....++++.+... ...+..+.++|++..|...|.. .+..+-..-...|..+
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 23455667777776543 4567788899999999888753 1222222333333322
Q ss_pred hcCcchHHHH-------------HHcC---------CHHHHHHh----hcCCCHHHHHHHHHHHHHHhC-----------
Q 012413 329 CSLKQNKERA-------------VSAG---------AVRPLVGM----LAGQGEGMAEKAMVVLSLLAG----------- 371 (464)
Q Consensus 329 ~~~~~~~~~i-------------v~~g---------~v~~Lv~l----L~~~~~~v~~~A~~aL~nLa~----------- 371 (464)
|.++.|+..+ .+.| .+..|.++ +..+.-.....|+.-+-.+-.
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 3344454332 2222 11111111 011111111222222222211
Q ss_pred CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhh---cCCHHHHHHHHHH
Q 012413 372 IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQ---TGSVRAKHKAETL 448 (464)
Q Consensus 372 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~---s~~~~v~~~A~~a 448 (464)
....++.|...|++..|++.+-...++++..-+..|..+++.++.++......|.++.|++++- +++...-..+..+
T Consensus 897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkI 976 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKI 976 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHH
Confidence 1245788899999999999999999999999999999999999999999999999999999863 4555666777888
Q ss_pred HHHhhcCCCCC
Q 012413 449 LGYLREPRQEG 459 (464)
Q Consensus 449 L~~L~~~~~~~ 459 (464)
+.+|+.+|-..
T Consensus 977 vemLgayrlsp 987 (2799)
T KOG1788|consen 977 VEMLGAYRLSP 987 (2799)
T ss_pred HHHHhhccCCc
Confidence 88888877654
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.00 E-value=3 Score=44.24 Aligned_cols=220 Identities=19% Similarity=0.136 Sum_probs=114.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhcc
Q 012413 221 VPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGAC 300 (464)
Q Consensus 221 i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~ 300 (464)
.|.|-..|++...-+...++++++.++...-. ..++ ..+|..|-.+|++.....|-.|.++|..|+.....+-.+
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v--- 340 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVG-SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV--- 340 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC-HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee---
Confidence 45555566666678899999999998753211 1122 236778888999999999999999999998763332222
Q ss_pred CChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHH--
Q 012413 301 GAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGRE-- 377 (464)
Q Consensus 301 g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~-- 377 (464)
+=+.+-.|+.+.+..+-..|...|..- ..+++...++. .+..++.+-..+-+.-+..++..|+ .++.-+.
T Consensus 341 -cN~evEsLIsd~Nr~IstyAITtLLKT-Gt~e~idrLv~-----~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~ 413 (898)
T COG5240 341 -CNKEVESLISDENRTISTYAITTLLKT-GTEETIDRLVN-----LIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY 413 (898)
T ss_pred -cChhHHHHhhcccccchHHHHHHHHHc-CchhhHHHHHH-----HHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH
Confidence 123344455555555555555444331 12233333222 1222222222222333444444444 2332211
Q ss_pred ------HHHhcCc-------HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH------c--------CChHHH
Q 012413 378 ------AIVEENG-------IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR------E--------GGIPPL 430 (464)
Q Consensus 378 ------~i~~~g~-------i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~------~--------g~i~~L 430 (464)
.+.++|+ +.++...++ ..|+.++.|+..||....+++-++..+.= + ..+..+
T Consensus 414 l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhI 492 (898)
T COG5240 414 LDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHI 492 (898)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHH
Confidence 1223443 233333332 24555666655555554433322222111 1 123344
Q ss_pred HHhhhcCCHHHHHHHHHHHHHhh
Q 012413 431 VALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 431 v~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
.+-+--++.-||..|..||..++
T Consensus 493 yNR~iLEN~ivRsaAv~aLskf~ 515 (898)
T COG5240 493 YNRLILENNIVRSAAVQALSKFA 515 (898)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc
Confidence 44444467788888988888776
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.43 Score=46.01 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHh
Q 012413 317 GKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLA-GQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIE 393 (464)
Q Consensus 317 v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~-~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~ 393 (464)
....|+.+|..++- |++.+..+.+..++..|+.+|. ..++.++..++.+|..+. .++.+...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45567889988888 8999999999999999999994 456788888888877776 88999999999999999999999
Q ss_pred cC--CHHHHHHHHHHHHHHhh
Q 012413 394 DG--SVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 394 ~~--~~~v~~~A~~aL~~L~~ 412 (464)
+. +.+++..++..|.-...
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 64 68888888888876554
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.38 Score=55.90 Aligned_cols=263 Identities=14% Similarity=0.050 Sum_probs=141.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhcC--CCchHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE-SGAVPALVPLLKCSDPWTQEHSVTALLNLSL--HENNKT 254 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~-~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~--~~~~~~ 254 (464)
..+.|...+.+++|..|.+++-.|..+.+.-...+..... .........+|.++|.-+|..|..-|+-+=. +...++
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHH
Confidence 3444556667899999999877776665543333333332 3445677888988888888888877654321 223333
Q ss_pred HHHhcCcHHHHHHHHccCCHH-------H---------------HHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc
Q 012413 255 LITNAGAIKSLVYVLKTGTET-------S---------------KQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY 312 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~-------v---------------~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~ 312 (464)
- .+..|+.-|..+... . ....-.=|++|+.+ +.+...|-...+|-++
T Consensus 899 ~-----LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd------l~qPdLVYKFM~LAnh 967 (1702)
T KOG0915|consen 899 S-----LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD------LGQPDLVYKFMQLANH 967 (1702)
T ss_pred H-----HHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh------cCChHHHHHHHHHhhh
Confidence 3 344555555432111 0 11111222222211 1122222233333333
Q ss_pred C-ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHH
Q 012413 313 G-SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVE 390 (464)
Q Consensus 313 ~-~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~ 390 (464)
. ...-++-|+.-++.|+.....+..=.-...||.|..+=-+++..++. |+.-+++.- ..+.....-.-......|+.
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~eLL~ 1046 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYLNEILDELLV 1046 (1702)
T ss_pred hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 2 33345556666666665331111111233788888887777777654 455555443 33222111122456777888
Q ss_pred HHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc--CChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 391 AIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVRE--GGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 391 lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~--g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
-|.+..-++|+.++.||..|-...+.. .+.++ ..-..+.+.+.+=.+.||+.|-.+.+.+++
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsK 1110 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSK 1110 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999764321 11111 222333344434456778777777666554
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=94.90 E-value=1.6 Score=48.42 Aligned_cols=236 Identities=13% Similarity=0.048 Sum_probs=151.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLV 266 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv 266 (464)
+..|.....+..++...+.....+.+.+. -.+...+..+. +..+-++..|+.+++-.++..-... ...+.+..|+
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~ 536 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLL 536 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHHH
Confidence 45666666777777766554222222211 12233333333 4556678888888877773211110 1255777888
Q ss_pred HHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc--CChhhHHHHHHHHHHHhcCcchHHHHHHcCCH
Q 012413 267 YVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY--GSSRGKKDALTTLYKLCSLKQNKERAVSAGAV 344 (464)
Q Consensus 267 ~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v 344 (464)
++....+.++......+|+..+..+.-...-.+.-..|..+.++.. +++.+...+-.++..|+....+..-+.+. .+
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~-~i 615 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQER-LI 615 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHH-HH
Confidence 8888888899999999999988765444444555667888887653 58888888888888888755555444443 88
Q ss_pred HHHHHhhcCCC----HHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhH
Q 012413 345 RPLVGMLAGQG----EGMAEKAMVVLSLLAGI-AEGREAIVEENGIAALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNR 418 (464)
Q Consensus 345 ~~Lv~lL~~~~----~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~ 418 (464)
|.++..|..+. .....-|+.+|..+..+ +.-.....-.-+.+++.++.- +++...-+++..||..+...+.++-
T Consensus 616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~ 695 (1005)
T KOG2274|consen 616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQL 695 (1005)
T ss_pred HHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHH
Confidence 99999998766 56677788888877632 222222223345677777665 5678888999999999987765543
Q ss_pred HHHHHcCChH
Q 012413 419 GLLVREGGIP 428 (464)
Q Consensus 419 ~~i~~~g~i~ 428 (464)
..-..+++..
T Consensus 696 ~t~~~e~g~~ 705 (1005)
T KOG2274|consen 696 LTWHDEPGHN 705 (1005)
T ss_pred HhhccCCCcc
Confidence 3333344444
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.84 E-value=1.9 Score=49.22 Aligned_cols=222 Identities=18% Similarity=0.199 Sum_probs=139.9
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-C-chHHHHHhcCcH
Q 012413 187 QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE--SGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-E-NNKTLITNAGAI 262 (464)
Q Consensus 187 ~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~--~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~-~~~~~i~~~g~i 262 (464)
++.+..+|..+-+.|..+... +.......+ ......|.+-+++...-.+..++.+|..|-.. + +....+.. .|
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I 740 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LI 740 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HH
Confidence 455889999999999988876 333222211 12333444555556667788888888887652 3 33333332 46
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhccc----ccchhhhhccCChHHHHHHhhcC--ChhhHHHH--HHHHHHHhcC-cc
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALI----EENKSSIGACGAIPPLVSLLIYG--SSRGKKDA--LTTLYKLCSL-KQ 333 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~----~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~A--~~aL~nL~~~-~~ 333 (464)
|-++-.++..+...+..+..+|..|+.. +.+.+. ....|...+..+.-+ ....+..+ +-++..+... ..
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666888999999999999988731 111111 111455555555543 22223222 3344443331 11
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
.-..-.-.+.+..+..+|.+..++++..|++.+..++ .+++..-.-...-.++.+..++++....++...-..|-.|+.
T Consensus 819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 1111111335566667778899999999999999998 677766665666688999999988888999988888888875
Q ss_pred c
Q 012413 413 E 413 (464)
Q Consensus 413 ~ 413 (464)
.
T Consensus 899 k 899 (1176)
T KOG1248|consen 899 K 899 (1176)
T ss_pred H
Confidence 3
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.054 Score=34.20 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKN 207 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~ 207 (464)
.++.+++++++++++||..|+.+|+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 367789999999999999999999988764
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.047 Score=34.47 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=25.9
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 427 IPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 427 i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+|.|++++.+++++||..|+++|+.|.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.73 E-value=2.2 Score=49.89 Aligned_cols=282 Identities=14% Similarity=0.082 Sum_probs=147.2
Q ss_pred hHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc
Q 012413 176 QPTVKICIDGL----QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHEN 251 (464)
Q Consensus 176 ~~~v~~Lv~~L----~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~ 251 (464)
+|.++.||-.| .++++.|+..-..+=..|..++...-... -...++-|+.-|.+...++|+.+|.||..|....+
T Consensus 993 ~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y-~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 993 EPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEY-LNEILDELLVNLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred hhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC
Confidence 44444445444 46777776544443344444422111111 13456667777788889999999999999998654
Q ss_pred hHHHHHh-cCcHHHHHHHHccCCHHHHHHH---HHHHHHhccc--c--c-chhhhhccCChHHHHHH-hhcCChhhHHHH
Q 012413 252 NKTLITN-AGAIKSLVYVLKTGTETSKQNA---ACALMSLALI--E--E-NKSSIGACGAIPPLVSL-LIYGSSRGKKDA 321 (464)
Q Consensus 252 ~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a---~~aL~~Ls~~--~--~-~~~~i~~~g~i~~Li~l-L~~~~~~v~~~A 321 (464)
.-+..-. ......+.+.+.+-.+.+|..| +.+|..|+.. + . .+..-.-.-++|.|+.= ..+.-.++|+.+
T Consensus 1072 ~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~s 1151 (1702)
T KOG0915|consen 1072 FDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFS 1151 (1702)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHH
Confidence 4222111 1233334444444455666654 5555555532 1 1 01111111223333321 114467899999
Q ss_pred HHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHH-----------HHHHHH-HHhCCHh---hHHHHHh-----
Q 012413 322 LTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEK-----------AMVVLS-LLAGIAE---GREAIVE----- 381 (464)
Q Consensus 322 ~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~-----------A~~aL~-nLa~~~~---~~~~i~~----- 381 (464)
+.++..|+++....-+-.-...+|.|+.....-.+.+... |+..++ +.+.+.. .....+.
T Consensus 1152 i~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~ 1231 (1702)
T KOG0915|consen 1152 IGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDIS 1231 (1702)
T ss_pred HHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH
Confidence 9999999996543222222336677777766554444222 222211 1121111 1111111
Q ss_pred --cCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCH-HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 382 --ENGIAALVEAIEDG-SVKGKEFAVLTLLQLCAESV-KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 382 --~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
...+|.+.++++.+ .-..|..++..+..|+..-. +... .....+..++-.+++-++.+++.-+.|.+.+.+...
T Consensus 1232 vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP--~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1232 VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP--YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc--chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence 34567777777653 34445566666666653200 0000 001234444455566688999999999999988766
Q ss_pred CCC
Q 012413 458 EGP 460 (464)
Q Consensus 458 ~~~ 460 (464)
+++
T Consensus 1310 ~dq 1312 (1702)
T KOG0915|consen 1310 PDQ 1312 (1702)
T ss_pred hHH
Confidence 654
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.7 Score=48.06 Aligned_cols=188 Identities=14% Similarity=0.083 Sum_probs=117.8
Q ss_pred hHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCchH
Q 012413 176 QPTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL-KCSDPWTQEHSVTALLNLSLHENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL-~~~~~~v~~~A~~aL~~La~~~~~~ 253 (464)
...+..++.... ..++..+..++++|..+....+... .. ...+..+...+ ....+..+..+..++..+++
T Consensus 188 ~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K----- 259 (415)
T PF12460_consen 188 EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DL-DEFLDSLLQSISSSEDSELRPQALEILIWITK----- 259 (415)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHH-----
Confidence 346666666654 4568999999999998887622211 10 12334444444 23344444444444444431
Q ss_pred HHHHh-----cCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccc--------hhhhhcc----CChHHHHHHhhcCCh
Q 012413 254 TLITN-----AGAIKSLVYVLKTGTETSKQNAACALMSLALI-EEN--------KSSIGAC----GAIPPLVSLLIYGSS 315 (464)
Q Consensus 254 ~~i~~-----~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~--------~~~i~~~----g~i~~Li~lL~~~~~ 315 (464)
..+.+ ...+..|+.+|.+ +++...++.++.-|..+ ++. -..+.+. ..+|.|++-.+..+.
T Consensus 260 aLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 260 ALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred HHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 11111 1245667777766 67788888888887766 221 1122222 246777777777777
Q ss_pred hhHHHHHHHHHHHhcCcchHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 316 RGKKDALTTLYKLCSLKQNKERAVS-AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 316 ~v~~~A~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
..+..-+.+|.++..+-+....+-+ ...+|.|++.|..++.+++..++.+|..+....
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 7888999999999985443322222 458899999999999999999999999988543
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=94.59 E-value=3.1 Score=43.29 Aligned_cols=133 Identities=18% Similarity=0.145 Sum_probs=99.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCc---hhHHHHHhcCChHHHHHhhcCC-------CHHHHHHHHHHHHHhcC
Q 012413 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRS---DNRVLIGESGAVPALVPLLKCS-------DPWTQEHSVTALLNLSL 248 (464)
Q Consensus 179 v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~---~~r~~i~~~g~i~~Ll~lL~~~-------~~~v~~~A~~aL~~La~ 248 (464)
...|..+++..+..-|.+|+.....+.++.+ .+++.+.++-+.+.+-.+|... +.-.+..+..+|...+.
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 3345666666677778888888888888755 3466788888888888888762 23346778888888888
Q ss_pred CCchH--HHHHhcCcHHHHHHHHccC-CH------HHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC
Q 012413 249 HENNK--TLITNAGAIKSLVYVLKTG-TE------TSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG 313 (464)
Q Consensus 249 ~~~~~--~~i~~~g~i~~Lv~lL~~~-~~------~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~ 313 (464)
.++.. ..++ ..||.|...+... ++ .+...+-.+|..++.++.+...++..|+++.+.++-.-+
T Consensus 93 ~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 93 VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC
Confidence 77543 3344 3699999988753 22 377889999999999999999999999999999876544
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=94.38 E-value=1.5 Score=46.90 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=84.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccC
Q 012413 224 LVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACG 301 (464)
Q Consensus 224 Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g 301 (464)
++...+ .++..++-|+..+....++ |+.... ++..++.|..+++..+|.+|...|..+|.+ ++....+
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv---- 97 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV---- 97 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH----
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH----
Confidence 444444 4678888899888888776 665444 788899999999999999999999999987 4555555
Q ss_pred ChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhc---CCCHHHHHHHHHHHHH
Q 012413 302 AIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLA---GQGEGMAEKAMVVLSL 368 (464)
Q Consensus 302 ~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~---~~~~~v~~~A~~aL~n 368 (464)
...|++||.++++.-...+-.+|..|...+. .+.+..|...+. ..++.+++.++..|..
T Consensus 98 -aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 98 -ADVLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp -HHHHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 6789999999888777777777776655221 234455555554 4567788888876643
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.17 Score=45.28 Aligned_cols=145 Identities=18% Similarity=0.110 Sum_probs=94.6
Q ss_pred ChHHHHHhhc--CCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccc-hh
Q 012413 220 AVPALVPLLK--CSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EEN-KS 295 (464)
Q Consensus 220 ~i~~Ll~lL~--~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~-~~ 295 (464)
.++.++..|. ...+++|..|.-++..+- +..++.+.+ -.-+.+-.++..++.+-...+..++..+=.. ++. ..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 3455555554 366788888988888873 222222222 1223344444444444666677777766544 343 44
Q ss_pred hhhccCChHHHHHHhh--cCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhc-CCCHH-HHHHHHHHHHH
Q 012413 296 SIGACGAIPPLVSLLI--YGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLA-GQGEG-MAEKAMVVLSL 368 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~--~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~-~~~~~-v~~~A~~aL~n 368 (464)
.+...|.++.++.++. ..+..+...++.+|..-|.+...+..+.+. +++.|-..++ +++.. ++..|+-+|.-
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 4556888899999999 678899999999998877777777666665 8899999995 44454 67777777653
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=94.35 E-value=2.9 Score=43.46 Aligned_cols=186 Identities=19% Similarity=0.143 Sum_probs=120.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCC----chHHHHHhcCcHHHHHHHHccC-------CHHHHHHHHHHHHHhccccc
Q 012413 224 LVPLLKCSDPWTQEHSVTALLNLSLHE----NNKTLITNAGAIKSLVYVLKTG-------TETSKQNAACALMSLALIEE 292 (464)
Q Consensus 224 Ll~lL~~~~~~v~~~A~~aL~~La~~~----~~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~a~~aL~~Ls~~~~ 292 (464)
+..+++....+-+-.|+..+..+.++. .+|+.+.++=|.+.+-++|.++ +.-.+..+...|...|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 556666666667788888888888864 4677899999999999999764 33456677788888888776
Q ss_pred chhhhhccCChHHHHHHhhcC-Chh------hHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHH-HHHHHH
Q 012413 293 NKSSIGACGAIPPLVSLLIYG-SSR------GKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGM-AEKAMV 364 (464)
Q Consensus 293 ~~~~i~~~g~i~~Li~lL~~~-~~~------v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v-~~~A~~ 364 (464)
....----..||.|.+.+... ++. +...+-.+|..++.++.+...++..|+++.+.++-.-++... ..-++.
T Consensus 96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~ 175 (698)
T KOG2611|consen 96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALK 175 (698)
T ss_pred hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence 433222235689999998754 333 677888999999999999999999999999987754443222 233333
Q ss_pred HHHHHh-C---CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 365 VLSLLA-G---IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 365 aL~nLa-~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
++--++ + .++.-..+.. .|..+-.=+...+...+-..+..|..+-
T Consensus 176 Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 176 VLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333222 1 1222222221 1333333333345566667777777544
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.26 Score=54.45 Aligned_cols=186 Identities=16% Similarity=0.121 Sum_probs=121.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchh-------------HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDN-------------RVLIGESGAVPALVPLLKCSDPWTQEHSVTALL 244 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~-------------r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~ 244 (464)
.-..++.+|+.++ +-..++.++.-+..+.+.. |+.+. ...+|.|++..+......+..=..+|.
T Consensus 816 ia~klld~Ls~~~--~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 816 IAEKLLDLLSGPS--TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHHhcCCcc--ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHH
Confidence 4455566666533 2224455555454444322 22232 367888998888766677778888888
Q ss_pred HhcCCCchHHHHH-h-cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCC---hhhHH
Q 012413 245 NLSLHENNKTLIT-N-AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGS---SRGKK 319 (464)
Q Consensus 245 ~La~~~~~~~~i~-~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~---~~v~~ 319 (464)
+...+-+. +.+. + ....|.|++.|.-+|..+|..+..++.-+....+.-..---...+|.++.+=.+++ ..+|.
T Consensus 893 hVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 893 HVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred HHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHH
Confidence 87765333 3332 2 55789999999999999999998888765432211111111234777777766654 67999
Q ss_pred HHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 012413 320 DALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLS 367 (464)
Q Consensus 320 ~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~ 367 (464)
.|+.+|..|++ .|...-.-....++..|...|.++..-+|++|..+=.
T Consensus 972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 99999999999 5544333334458888999999999989998876543
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.67 Score=41.39 Aligned_cols=144 Identities=16% Similarity=0.090 Sum_probs=93.9
Q ss_pred hHHHHHHhhc--CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHH-
Q 012413 303 IPPLVSLLIY--GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREA- 378 (464)
Q Consensus 303 i~~Li~lL~~--~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~- 378 (464)
+..++..|.. ..+.+|..++-++..+- +..++.+.+ -.-+.+-.++...+.+....+..++..|= ..++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 4556666554 57789999998888884 333333322 12334444554444455777778887776 44554444
Q ss_pred HHhcCcHHHHHHHHh--cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc-CCHH-HHHHHHHHHHH
Q 012413 379 IVEENGIAALVEAIE--DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT-GSVR-AKHKAETLLGY 451 (464)
Q Consensus 379 i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~-v~~~A~~aL~~ 451 (464)
+..+|.++.++.++. ..+..++..++.+|..=|. +. .+...+...+++.|.++++. +++. +|..|+-.|-.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DK-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SH-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cH-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 456889999999999 6788888888888877664 33 44444445569999999965 4555 78887766643
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.72 Score=50.91 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=92.0
Q ss_pred hHHHHHHcCCHHHHHHhhcCC--------CHHHHHHHHHHHHHHhCCHhhHHHHHhc--------CcHHHHHHHHhc---
Q 012413 334 NKERAVSAGAVRPLVGMLAGQ--------GEGMAEKAMVVLSLLAGIAEGREAIVEE--------NGIAALVEAIED--- 394 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~--------~~~v~~~A~~aL~nLa~~~~~~~~i~~~--------g~i~~Lv~lL~~--- 394 (464)
..+.+...+++..++++.... ..+...+|+.+|+.+..-+..+.++..+ .|+..+++.-..
T Consensus 593 ~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 593 AAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence 345677788888888887532 3567888999999888888888887642 145555554432
Q ss_pred -CCHHHHHHHHHHHHHHhhcCHHh-----------------------------------HHHHHHcCChHHHHHhhhcCC
Q 012413 395 -GSVKGKEFAVLTLLQLCAESVKN-----------------------------------RGLLVREGGIPPLVALSQTGS 438 (464)
Q Consensus 395 -~~~~v~~~A~~aL~~L~~~~~~~-----------------------------------~~~i~~~g~i~~Lv~lL~s~~ 438 (464)
.++.++..|+.+|-|..+..|+. ...+....||..|+++|+-..
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~ 752 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN 752 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence 37999999999999987643211 223455789999999998754
Q ss_pred -----HHHHHHHHHHHHHhhcCCCCC
Q 012413 439 -----VRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 439 -----~~v~~~A~~aL~~L~~~~~~~ 459 (464)
.-+|.-|+.+|-.|++++..+
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~tVr 778 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDTVR 778 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcHHH
Confidence 389999999999999876543
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=8.6 Score=46.87 Aligned_cols=341 Identities=14% Similarity=0.077 Sum_probs=194.1
Q ss_pred cccccCCcchhHHHHHHhhhhhcccc-----hhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCc
Q 012413 88 AKSVKSTISEDDYLNVSQAFSDFSVC-----SSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENF 162 (464)
Q Consensus 88 ~~~~~~~~~e~~~~~L~~ll~~~~~~-----r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~ 162 (464)
||-+.+.-=+.+..-|...+...... .+..+..|+-++..|+...+-..+. .+ ...|..+
T Consensus 173 SKw~~~~~c~~aa~~la~~~~~~d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~----------~l---a~~l~~~-- 237 (2710)
T PRK14707 173 SKWSDNPDCQAVAPRFAALVASDDRLRSAMDAQGVATVLNALCKWPDTPDCGNAVS----------AL---AERLADE-- 237 (2710)
T ss_pred hcCCCCchHHHHHHHHHHHhcCChhhhcccchHHHHHHHHHHhcCCCChhHHHHHH----------HH---HHHHcCc--
Confidence 55555555666666666555432222 2355666777777777665543211 11 2233222
Q ss_pred hhhHhhhcCCCCchHHHHHHHHhcC-CCCHHHHHHHHHHH-HHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHH
Q 012413 163 STEIIESISPEDLQPTVKICIDGLQ-SSSVAIKRSAAAKL-RLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHS 239 (464)
Q Consensus 163 s~~i~~~~~~~~~~~~v~~Lv~~L~-s~~~~vr~~A~~~L-~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A 239 (464)
+..++.+... .|-.++..|+ -++..+..+++..| ..++.+ ...++.+-..++ --.++-|. -++..+-..|
T Consensus 238 -~~l~~~~~~q----~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~~al~~q~v-analNalSKwpd~~vc~~A 310 (2710)
T PRK14707 238 -SRLRNELKPQ----ELGNALNALSKWADTPVCAAAASALAERLVDD-PGLRKALDPINV-TQALNALSKWADLPVCAEA 310 (2710)
T ss_pred -HHHHHhCChH----HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHHHhcCHHHH-HHHHhhhhcCCCchHHHHH
Confidence 4455555443 3344455554 36666777777777 445544 666666543333 33344443 3666555544
Q ss_pred HHHH-HHhcCCCchHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHH-HhcccccchhhhhccCChHHHHHHhhc-CCh
Q 012413 240 VTAL-LNLSLHENNKTLITNAGAIKSLVYVLKT-GTETSKQNAACALM-SLALIEENKSSIGACGAIPPLVSLLIY-GSS 315 (464)
Q Consensus 240 ~~aL-~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~-~Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~ 315 (464)
+..| ..|..+++.++.+ +.-.+...+..|.. ++..+-..|+.+|. .|+.+++.++.+--.| +...++-|.. ++.
T Consensus 311 a~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsKWp~~ 388 (2710)
T PRK14707 311 AIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSKWPDT 388 (2710)
T ss_pred HHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhcCCCc
Confidence 4444 4566656655443 33445555555544 56666666666665 4777777766664344 5555555544 555
Q ss_pred hhHHHHHHHHH-HHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHH-HhCCHhhHHHHHhcCcHHHHHHHHh
Q 012413 316 RGKKDALTTLY-KLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSL-LAGIAEGREAIVEENGIAALVEAIE 393 (464)
Q Consensus 316 ~v~~~A~~aL~-nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~n-La~~~~~~~~i~~~g~i~~Lv~lL~ 393 (464)
.+.+.|+..|. .|..+.+.++.|-..|+-..|-.+-+-++..+-..++..|.. ++...+.++.+--.+ |...++.+.
T Consensus 389 ~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalS 467 (2710)
T PRK14707 389 PVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALS 467 (2710)
T ss_pred hHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhh
Confidence 66655555554 455566777666666555555555577777776666665554 445566666655444 444444444
Q ss_pred -cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHhh
Q 012413 394 -DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGS-VRAKHKAETLLGYLR 453 (464)
Q Consensus 394 -~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~v~~~A~~aL~~L~ 453 (464)
=++..+...|+..|..=..+.+..++.|--.++...|-.+.+-++ +...+.+.|+-+.+.
T Consensus 468 KWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~ 529 (2710)
T PRK14707 468 KWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV 529 (2710)
T ss_pred cCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Confidence 356667777777776666667777777777777777777777765 455555555555554
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.23 Score=45.28 Aligned_cols=77 Identities=17% Similarity=0.363 Sum_probs=64.3
Q ss_pred HHHHHHcCCHHHHHHhhcC---------CCHHHHHHHHHHHHHHhCCHhhHHHHHh-cCcHHHHHHHHhcCCHHHHHHHH
Q 012413 335 KERAVSAGAVRPLVGMLAG---------QGEGMAEKAMVVLSLLAGIAEGREAIVE-ENGIAALVEAIEDGSVKGKEFAV 404 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~---------~~~~v~~~A~~aL~nLa~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~ 404 (464)
.+.|++.||+..|+.+|.. .+......++.||..|..+..+...++. .+++..|+..|.+.+..++..++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 5677888999999998852 3356788899999999999999998887 77999999999999999999999
Q ss_pred HHHHHHh
Q 012413 405 LTLLQLC 411 (464)
Q Consensus 405 ~aL~~L~ 411 (464)
..|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999887
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.4 Score=48.91 Aligned_cols=169 Identities=15% Similarity=0.116 Sum_probs=114.6
Q ss_pred HHHHhccc-ccchhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcchHHHHHHcCCH--HHHHHhhc-CCCHH
Q 012413 283 ALMSLALI-EENKSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLKQNKERAVSAGAV--RPLVGMLA-GQGEG 357 (464)
Q Consensus 283 aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v--~~Lv~lL~-~~~~~ 357 (464)
+|+++... ++++..+.+.|+...+..+++.. +..+...+++.+.+++...+....+....-+ ...-.++. ..+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 77887766 68899999999999999999875 6779999999999999966544333211111 12222333 33347
Q ss_pred HHHHHHHHHHHHhCCH----------hhHHHHHh--------------cCcHHH-HHHHHh-cCCHHHHHHHHHHHHHHh
Q 012413 358 MAEKAMVVLSLLAGIA----------EGREAIVE--------------ENGIAA-LVEAIE-DGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 358 v~~~A~~aL~nLa~~~----------~~~~~i~~--------------~g~i~~-Lv~lL~-~~~~~v~~~A~~aL~~L~ 411 (464)
....|+.+|+.+.... ...+.+.+ ..-..+ +..++. +..+..+..|+|++.++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 7888999999887431 11111111 112233 455555 457888999999999999
Q ss_pred hcCHHhHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHH
Q 012413 412 AESVKNRGLLVREGGIPPLVALSQTG-SVRAKHKAETLLGY 451 (464)
Q Consensus 412 ~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~~ 451 (464)
...++++..+.+.|+++.+.+.-... -.+++..+...+..
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 99999999999999999888876443 34555555544443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.6 Score=48.50 Aligned_cols=135 Identities=19% Similarity=0.170 Sum_probs=89.7
Q ss_pred HHHHHhc-CcchHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcH--HHHHHHHhcCCH-H
Q 012413 324 TLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLAGIAEGREAIVEENGI--AALVEAIEDGSV-K 398 (464)
Q Consensus 324 aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i--~~Lv~lL~~~~~-~ 398 (464)
+|++++. +++++..+++.||...+...+..- ..+.+..+++.+.+++...+.+.......-+ ..+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 8889988 678999999999999999999754 4677999999999999655443332221111 233334443333 6
Q ss_pred HHHHHHHHHHHHhhcCHH---------hHHHHHH--------------cCChHH-HHHhhhcC-CHHHHHHHHHHHHHhh
Q 012413 399 GKEFAVLTLLQLCAESVK---------NRGLLVR--------------EGGIPP-LVALSQTG-SVRAKHKAETLLGYLR 453 (464)
Q Consensus 399 v~~~A~~aL~~L~~~~~~---------~~~~i~~--------------~g~i~~-Lv~lL~s~-~~~v~~~A~~aL~~L~ 453 (464)
.-..|+..|..+...++. ....+++ .....+ +..++... .+..+.+|.|+++++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 667777777777764221 1111111 122333 55566554 5789999999999999
Q ss_pred cCCCC
Q 012413 454 EPRQE 458 (464)
Q Consensus 454 ~~~~~ 458 (464)
++.++
T Consensus 654 ~~~~~ 658 (699)
T KOG3665|consen 654 EQNKE 658 (699)
T ss_pred HcChh
Confidence 98876
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.4 Score=46.47 Aligned_cols=154 Identities=21% Similarity=0.196 Sum_probs=111.7
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCCh----hhHHHHHHHHHHHhcCcchHH
Q 012413 261 AIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSS----RGKKDALTTLYKLCSLKQNKE 336 (464)
Q Consensus 261 ~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~----~v~~~A~~aL~nL~~~~~~~~ 336 (464)
....+.+.+.+++...+..+...|..++.+......++...++..|..++.+++. .+....+.++..+..+.-..=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3456778888999888888999999999988888888899999999999998743 566667777776654322100
Q ss_pred HHHHcCCHHHHHHhh--cCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 337 RAVSAGAVRPLVGML--AGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL--~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
..+....|.....+. +..+..+-..|+..|.++. ..+..+..+.++--++.|+.++...+..++..|...|-.+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 011112223333333 2334566788899999998 4555778888888999999999999999999888877777655
Q ss_pred C
Q 012413 414 S 414 (464)
Q Consensus 414 ~ 414 (464)
.
T Consensus 244 a 244 (713)
T KOG2999|consen 244 A 244 (713)
T ss_pred C
Confidence 3
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=94.05 E-value=6.1 Score=44.41 Aligned_cols=213 Identities=18% Similarity=0.135 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc----CCC----HHHHHHHHHHHHHhcCCCchH-----HHH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK----CSD----PWTQEHSVTALLNLSLHENNK-----TLI 256 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~----~~~----~~v~~~A~~aL~~La~~~~~~-----~~i 256 (464)
..+.-...+..|..+++- ..+|+.+.+.|+++.|+..|. ... +.+-+..+.++..+....... ...
T Consensus 135 ~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~ 213 (802)
T PF13764_consen 135 GRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSS 213 (802)
T ss_pred cHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 445555567777777777 899999999999999998774 333 566666666666654321110 011
Q ss_pred H--------hcCcHHHHHHHHccC----CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc---------CCh
Q 012413 257 T--------NAGAIKSLVYVLKTG----TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY---------GSS 315 (464)
Q Consensus 257 ~--------~~g~i~~Lv~lL~~~----~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~---------~~~ 315 (464)
. +...+..|+..+.++ ++.+....+..|-+|+...+.+ +..|++.++. ...
T Consensus 214 ~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~--------m~~Lv~~F~p~l~f~~~D~~~~ 285 (802)
T PF13764_consen 214 SSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK--------MDALVEHFKPYLDFDKFDEEHS 285 (802)
T ss_pred ccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH--------HHHHHHHHHHhcChhhcccccC
Confidence 1 122367777777654 6788889999999998764332 2333333221 111
Q ss_pred hhHHHHHHHHHHHhcC-------cchHHHHHHcCCHHHHHHhhcCCCH--------HH--------HHHHHHHHHHHhCC
Q 012413 316 RGKKDALTTLYKLCSL-------KQNKERAVSAGAVRPLVGMLAGQGE--------GM--------AEKAMVVLSLLAGI 372 (464)
Q Consensus 316 ~v~~~A~~aL~nL~~~-------~~~~~~iv~~g~v~~Lv~lL~~~~~--------~v--------~~~A~~aL~nLa~~ 372 (464)
.--...+.+++.++.. ...++.+++.|.+...+.+|...-+ +. ...++..|.-|+..
T Consensus 286 ~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~g 365 (802)
T PF13764_consen 286 PDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARG 365 (802)
T ss_pred chHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhc
Confidence 1112346666666552 1346788999999998888854322 22 34577888888844
Q ss_pred HhhHHHHHhcCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhh
Q 012413 373 AEGREAIVEENGIAALVEAIED--GSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 373 ~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~ 412 (464)
....+.++..+++ ++++.|.. .+..+=..|=-+|-.|..
T Consensus 366 h~~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 366 HEPTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CHHHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 4433344556666 56666653 245555555555555554
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.54 Score=42.83 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-CchhHHHHHhcCChHHHHHhhcC---------CCHHHHHHHHHHHHHh
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKN-RSDNRVLIGESGAVPALVPLLKC---------SDPWTQEHSVTALLNL 246 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~-~~~~r~~i~~~g~i~~Ll~lL~~---------~~~~v~~~A~~aL~~L 246 (464)
...+.+++.+.+..... ..+..|...-.. +...-+.+++.||+..|+.+|.. .+.+....++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 45555666676554332 333334222222 22344667788999999998753 4568899999999999
Q ss_pred cCCCchHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 012413 247 SLHENNKTLITN-AGAIKSLVYVLKTGTETSKQNAACALMSLA 288 (464)
Q Consensus 247 a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls 288 (464)
..+..+...+.. .+++..|+..|.+++..++..++..|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 988877776665 889999999999999999999999998875
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=93.94 E-value=2.5 Score=40.93 Aligned_cols=207 Identities=19% Similarity=0.147 Sum_probs=111.4
Q ss_pred HHhhhhhhhhccCCcc-cccCCcchhHHHHHHhhhhhcccc-------hhhhHHHHHHhhcCCCchhhhhcCcccCcccc
Q 012413 74 IDMRLGELASKTNDAK-SVKSTISEDDYLNVSQAFSDFSVC-------SSDISGELQRLASLPSPENILRQPNENNCQAE 145 (464)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~L~~ll~~~~~~-------r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~ 145 (464)
++..+..|.+.| ++ .....++|+.+..|.++++..... .....-.+..+.+.|. +.
T Consensus 16 ~~~i~~KL~efn--~~~~~~~~l~~~el~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wp~--------------~~ 79 (268)
T PF08324_consen 16 LDKILKKLKEFN--EKLQKELKLSEEELESLESLLSALKSTSAYHSDLSAWLILLLKILLSWPP--------------ES 79 (268)
T ss_dssp HHHHHHHHHHHH--TTSHCCT-S-HHHHHHHHHHHCCCCCC-SS---HHHHHHHHHHHHCCS-C--------------CC
T ss_pred HHHHHHHHHHHH--HhCccccCCCHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHhCCC--------------cc
Confidence 455666666665 33 478889999999999999984332 1222223333333322 12
Q ss_pred cCCCchhhhhhhcccCchhhHhhhcCCCCchHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhccCchhHHHHHhc-C-ChH
Q 012413 146 LEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGL-QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGES-G-AVP 222 (464)
Q Consensus 146 ~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~~~v~~Lv~~L-~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~-g-~i~ 222 (464)
+.|.++-+ ..+...............+ +...+..++... .+..+..+.-+++++.|+..+ +..+..+.+. + .+.
T Consensus 80 ~fP~lDLl-Rl~~l~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~~~~~~~~~~~~~i~ 156 (268)
T PF08324_consen 80 RFPALDLL-RLAALHPPASDLLASEDSG-IADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PPGRQLLLSHFDSSIL 156 (268)
T ss_dssp -HHHHHHH-HHHCCCHCHHHHHHSTTTH--HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CCCHHHHHCTHHTCHH
T ss_pred chhHHhHH-HHHHhCccHHHHHhccccc-hHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-CccHHHHHhcccchHH
Confidence 44555222 2222111111122111111 123333333322 346788899999999999987 5666666543 3 344
Q ss_pred HHHHhhcCC----CHHHHHHHHHHHHHhcCC--CchHHHHHhcCcHHHHHHHHcc--CCHHHHHHHHHHHHHhcccccch
Q 012413 223 ALVPLLKCS----DPWTQEHSVTALLNLSLH--ENNKTLITNAGAIKSLVYVLKT--GTETSKQNAACALMSLALIEENK 294 (464)
Q Consensus 223 ~Ll~lL~~~----~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~~Ls~~~~~~ 294 (464)
..+..+... +..++..++.++.|++.. ......=.....+..++..+.. .+++....++-+|++|...+...
T Consensus 157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA 236 (268)
T ss_dssp HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence 444444443 788999999999999742 1110000011134555553322 58999999999999998665444
Q ss_pred hhhhc
Q 012413 295 SSIGA 299 (464)
Q Consensus 295 ~~i~~ 299 (464)
....+
T Consensus 237 ~~~~~ 241 (268)
T PF08324_consen 237 KQLAK 241 (268)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 44444
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.9 Score=48.42 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=125.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPL-LKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~l-L~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
..+.+-..+.+.++.-|.+|+..+.....+.. ........|.+..++.. +.+.+..+...|+..|..|+..-.....=
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 33444566778999999999999988876633 11111112333334433 34567888899999999998742111222
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-Cc-ch
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LK-QN 334 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~-~~ 334 (464)
...+..|.|+.-+.+....++..+..++-.++.. ..-...++.++..+.+.++.++..+...+..... .+ ..
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 2356889999999998888888777777665431 1112346778888999999999987777666555 33 22
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 012413 335 KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa 370 (464)
...-.-.+.+|.++....+.+.+||..|..+++.+.
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 222233458889999999999999999998888665
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.53 Score=52.19 Aligned_cols=149 Identities=18% Similarity=0.105 Sum_probs=107.9
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--cCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchH
Q 012413 259 AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--CGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNK 335 (464)
Q Consensus 259 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~ 335 (464)
...+|.|+......+...+.+=..+|.+.-.+-. ++.+.. ...+|.|++.|.-+|..+|-.++.++.-+.. ++.-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 3478999999887777777777777877655422 133333 4457788888888899999999999887766 33332
Q ss_pred HHHHHcCCHHHHHHhhcCCC---HHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012413 336 ERAVSAGAVRPLVGMLAGQG---EGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 336 ~~iv~~g~v~~Lv~lL~~~~---~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 409 (464)
..-++ -.+|.++.+=.+.+ ..++..|+.+|..|.. .|...-.-....++.+|...|.++...+|..|+.+=.+
T Consensus 945 t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 945 TEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred hHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 22222 26788887777666 5679999999999997 55555555566788999999999988999998876443
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=93.51 E-value=7.9 Score=43.30 Aligned_cols=179 Identities=13% Similarity=0.032 Sum_probs=123.3
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVY 267 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ 267 (464)
+..+.++..|++++...++- ..+ ..+ ..+.++.|+++......++......+|+..++-+.......+.-..|.++.
T Consensus 502 ~~~~~~ki~a~~~~~~~~~~-~vl-~~~-~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~ 578 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCKV-KVL-LSL-QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTIN 578 (1005)
T ss_pred CCCCchhHHHHHHHHhccCc-eec-ccc-chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHH
Confidence 45566788888888766633 111 111 257788888888888889999999999998885544445456667777777
Q ss_pred HHc--cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCC----hhhHHHHHHHHHHHhcCc--chHHHHH
Q 012413 268 VLK--TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGS----SRGKKDALTTLYKLCSLK--QNKERAV 339 (464)
Q Consensus 268 lL~--~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~----~~v~~~A~~aL~nL~~~~--~~~~~iv 339 (464)
+.. ++++.+...+-.++..|+....+...+ ....||.++..|..++ .....-++..|..+.+.. +.-+.++
T Consensus 579 lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~ 657 (1005)
T KOG2274|consen 579 LFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI 657 (1005)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH
Confidence 653 467777777777777776543332222 2346999999998875 667778888888887743 2333333
Q ss_pred HcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhC
Q 012413 340 SAGAVRPLVGML-AGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 340 ~~g~v~~Lv~lL-~~~~~~v~~~A~~aL~nLa~ 371 (464)
. -++|++.++. .+++.+....+..||+.+..
T Consensus 658 ~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 658 C-YAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred H-HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 3 3788888775 66677888889999998874
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.50 E-value=1.2 Score=48.28 Aligned_cols=135 Identities=14% Similarity=0.079 Sum_probs=95.0
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHH-HccCCHHHHHHHHHHHHHhcccccch
Q 012413 216 GESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYV-LKTGTETSKQNAACALMSLALIEENK 294 (464)
Q Consensus 216 ~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~aL~~Ls~~~~~~ 294 (464)
+...++|.|...+++.+..+|..++..+...+..-+ ..++..-.+|.|-.+ ++..+..++.+++-++..+... .
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---l 460 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---L 460 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---H
Confidence 345788999999999999999999999999887544 234444566666554 4556889999999999998722 1
Q ss_pred hhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCC
Q 012413 295 SSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQG 355 (464)
Q Consensus 295 ~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~ 355 (464)
+...-..-+.++.+..+..++.+....+.+..++.........++.+.++|.++-+...+.
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 1111123355666666777999999888888888774433244444558888888776554
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.41 E-value=10 Score=40.20 Aligned_cols=173 Identities=13% Similarity=0.078 Sum_probs=123.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCH----HHHHHHHHHHHHhcccccchhh
Q 012413 221 VPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTE----TSKQNAACALMSLALIEENKSS 296 (464)
Q Consensus 221 i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~v~~~a~~aL~~Ls~~~~~~~~ 296 (464)
...+...+.+.++.-+..|..-|..++.++.....+....++..|..+..+++. ++....+.++..|-.+.-..-.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 456777888888888888999999999998888999999999999999998754 6777777777777555332222
Q ss_pred hhccCChHHHHHHhhc--CChhhHHHHHHHHHHHhcCcc-hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-C-
Q 012413 297 IGACGAIPPLVSLLIY--GSSRGKKDALTTLYKLCSLKQ-NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-G- 371 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~--~~~~v~~~A~~aL~nL~~~~~-~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~- 371 (464)
.+...+|..++.+..- .+..+...|+..|-++..... ..+.+.++--+..|+..+...+..++..|+..|-.|- .
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 2333345555555532 366788899999999988665 5566667778899999999999888888877777665 2
Q ss_pred CHhhHHHHHhcCcHHHHHHHHh
Q 012413 372 IAEGREAIVEENGIAALVEAIE 393 (464)
Q Consensus 372 ~~~~~~~i~~~g~i~~Lv~lL~ 393 (464)
.+.-+..+.+.-....+-..+.
T Consensus 245 ~~~~R~~~~~~l~~~~~R~ai~ 266 (713)
T KOG2999|consen 245 PDDKRFEMAKSLEQKQFRNAIH 266 (713)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555444444444443
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.36 Score=37.17 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHHcC
Q 012413 277 KQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKERAVSAG 342 (464)
Q Consensus 277 ~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g 342 (464)
++.++|++++++..+.+-..+.+.+.++.++++... +...+|-.+..+|+-++.+.+..+.+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 468999999999988887777788999999999876 477899999999999999999888877765
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.83 Score=50.00 Aligned_cols=200 Identities=19% Similarity=0.134 Sum_probs=111.1
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHHHhcCC
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC----SDPWTQEHSVTALLNLSLH 249 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~----~~~~v~~~A~~aL~~La~~ 249 (464)
+..+.+..+.+++.+....- ..|...|..+....... ....+..+..++++ .++.++..|+.+++.+...
T Consensus 392 GT~~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~ 465 (618)
T PF01347_consen 392 GTNPAVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHK 465 (618)
T ss_dssp -SHHHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCc
Confidence 44677778788887643222 23555565555442111 22345556666665 5678888999999888642
Q ss_pred C--c--------hHHHHHhcCcHHHHHHHHc----cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC--
Q 012413 250 E--N--------NKTLITNAGAIKSLVYVLK----TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG-- 313 (464)
Q Consensus 250 ~--~--------~~~~i~~~g~i~~Lv~lL~----~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~-- 313 (464)
- . ..........++.|...|. .++..-+..++.+|+|+. -...++.|...+...
T Consensus 466 ~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g----------~~~~i~~l~~~i~~~~~ 535 (618)
T PF01347_consen 466 YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG----------HPESIPVLLPYIEGKEE 535 (618)
T ss_dssp HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-
T ss_pred eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC----------CchhhHHHHhHhhhccc
Confidence 1 1 1111122346666766665 457788899999999982 234677777777765
Q ss_pred -ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHH
Q 012413 314 -SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQ--GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVE 390 (464)
Q Consensus 314 -~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~ 390 (464)
...+|..|+++|..++..... .+.+.|..++.+. +.++|..|..+|-.. .|. ...+..+..
T Consensus 536 ~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~--~P~-------~~~l~~i~~ 599 (618)
T PF01347_consen 536 VPHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMNTTEDPEVRIAAYLILMRC--NPS-------PSVLQRIAQ 599 (618)
T ss_dssp S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT------------HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHhc--CCC-------HHHHHHHHH
Confidence 667889999999988553221 1445667776544 456676666555432 121 234566666
Q ss_pred HHh-cCCHHHHHHHHH
Q 012413 391 AIE-DGSVKGKEFAVL 405 (464)
Q Consensus 391 lL~-~~~~~v~~~A~~ 405 (464)
.+. +++..|......
T Consensus 600 ~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 600 SLWNEPSNQVASFVYS 615 (618)
T ss_dssp HHTT-S-HHHHHHHHH
T ss_pred HHhhCchHHHHHHHHH
Confidence 665 345666554433
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=7.1 Score=40.58 Aligned_cols=184 Identities=12% Similarity=0.082 Sum_probs=115.1
Q ss_pred hHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcc-CchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCch
Q 012413 176 QPTVKICIDGLQSS-SVAIKRSAAAKLRLLAKN-RSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENN 252 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~-~~~vr~~A~~~L~~La~~-~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~ 252 (464)
.+.|..+++.++.. ..+-+..|+.-|..+... +...++...+ ..+..+++.|.+ .++..+..|+++|..++.+...
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 45666777777654 556677788766555444 3333332211 345567788887 7888999999999999987543
Q ss_pred HHHHHh--cCcHHHHHHHHccCCHHHHHHHHHH-HHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHh
Q 012413 253 KTLITN--AGAIKSLVYVLKTGTETSKQNAACA-LMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLC 329 (464)
Q Consensus 253 ~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~a-L~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~ 329 (464)
+ +.+ .-+|..+++.-++.+.++...|... +.-++.+...+ .|..+..++...+...--.++..+..|+
T Consensus 364 ~--l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 364 R--LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLF 434 (516)
T ss_pred h--hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHH
Confidence 2 222 2355666666666666666555554 44555553322 2444555555566665556666666665
Q ss_pred cC--cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 012413 330 SL--KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 330 ~~--~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa 370 (464)
.. .+-...++ ....|.+++.-.+....||..|..||..|.
T Consensus 435 e~l~~EeL~~ll-~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 435 ERLSAEELLNLL-PDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hhcCHHHHHHhh-hhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 52 22222222 347899999999999999999998888665
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.61 Score=51.03 Aligned_cols=167 Identities=20% Similarity=0.084 Sum_probs=95.4
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhc----CChhhHHHHHHHHHHHhc----C
Q 012413 261 AIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIY----GSSRGKKDALTTLYKLCS----L 331 (464)
Q Consensus 261 ~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~A~~aL~nL~~----~ 331 (464)
++..+.+++..+...- ..+..+|..|.... .-. ...+..+..++.. .++.++..|+-+++.|.. .
T Consensus 396 av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-H-HHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 5666677776643222 22444455544331 111 1235666666654 356677778777777754 2
Q ss_pred c------chHHHHHHcCCHHHHHHhhc----CCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcC---CHH
Q 012413 332 K------QNKERAVSAGAVRPLVGMLA----GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDG---SVK 398 (464)
Q Consensus 332 ~------~~~~~iv~~g~v~~Lv~lL~----~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~ 398 (464)
. ......+....++.|...+. ..+...+.-++.+|+|+.. ...++.|..++... +..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchH
Confidence 1 01111122335566665554 4456667888999999875 35688888888765 788
Q ss_pred HHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHH
Q 012413 399 GKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG--SVRAKHKAETLLGY 451 (464)
Q Consensus 399 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~~ 451 (464)
+|..|+++|..+....+. .+.+.|..++.+. ++++|-.|..+|-.
T Consensus 540 ~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 999999999988765542 2356677777664 56888888766543
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.7 Score=45.96 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=88.0
Q ss_pred HHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHH
Q 012413 308 SLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGM-LAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIA 386 (464)
Q Consensus 308 ~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~l-L~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~ 386 (464)
+++.+.++-+|...+.+++---... ...|++..|+.. +.+.+.+|++.|..+|+-+|..+ -..+.
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GT------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~~lv 588 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGT------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RDLLV 588 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcC------CcchhHhhhheeecccCchHHHHHHHHheeeeEecC--------cchhh
Confidence 4455555555555444443211111 124567777777 67888999999999999888533 34566
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 387 ALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 387 ~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
..+++|. +.+..+|...+.+|+-.|...-. .-++..|-.+..+.+.-||+.|+.++.+|.-+
T Consensus 589 ~tvelLs~shN~hVR~g~AvaLGiacag~G~-------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 589 GTVELLSESHNFHVRAGVAVALGIACAGTGD-------KVATDILEALMYDTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred HHHHHhhhccchhhhhhhHHHhhhhhcCCcc-------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence 7777776 56899999999999988876422 22456677777888999999999999998654
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.4 Score=42.68 Aligned_cols=184 Identities=16% Similarity=0.090 Sum_probs=108.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccC--ChHHHHHHhhc----CChhhHHHHHHHHHHHhcCcchHHH
Q 012413 264 SLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACG--AIPPLVSLLIY----GSSRGKKDALTTLYKLCSLKQNKER 337 (464)
Q Consensus 264 ~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g--~i~~Li~lL~~----~~~~v~~~A~~aL~nL~~~~~~~~~ 337 (464)
.+..++..-+.+-+--+...++-+..++.....+...+ ....+..++.. ..+..+.-++++++|+-.++..+..
T Consensus 67 ~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~ 146 (268)
T PF08324_consen 67 LLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQL 146 (268)
T ss_dssp HHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHH
Confidence 33444444444445555555666666654444333322 23444444433 3566788899999999999998888
Q ss_pred HHHcC--CHHHHHHhhcCC----CHHHHHHHHHHHHHHhCC-HhhH-HHHHhcCcHHHHHHHHh--cCCHHHHHHHHHHH
Q 012413 338 AVSAG--AVRPLVGMLAGQ----GEGMAEKAMVVLSLLAGI-AEGR-EAIVEENGIAALVEAIE--DGSVKGKEFAVLTL 407 (464)
Q Consensus 338 iv~~g--~v~~Lv~lL~~~----~~~v~~~A~~aL~nLa~~-~~~~-~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL 407 (464)
+.... .+-..+..+... +..++..++..+.|++.. ...+ ..=.....+..+++.+. ..+++....++.+|
T Consensus 147 ~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAl 226 (268)
T PF08324_consen 147 LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVAL 226 (268)
T ss_dssp HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 87532 344444444333 677899999999999842 1111 00011113455555333 26899999999999
Q ss_pred HHHhhcCHHhHHHHHHcCChHHHHHhhh-cCCHHHHHHHHH
Q 012413 408 LQLCAESVKNRGLLVREGGIPPLVALSQ-TGSVRAKHKAET 447 (464)
Q Consensus 408 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~ 447 (464)
|+|...++.........|+-..+...-. ...+++++.+..
T Consensus 227 GtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e 267 (268)
T PF08324_consen 227 GTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAE 267 (268)
T ss_dssp HHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence 9999777665555444555555555443 346777777654
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=92.36 E-value=3.4 Score=44.84 Aligned_cols=132 Identities=16% Similarity=0.038 Sum_probs=83.0
Q ss_pred ChHHHHHHhhcC----ChhhHHHHHHHHHHHhc----CcchHHHHHHcCCHHHHHHhhc----CCCHHHHHHHHHHHHHH
Q 012413 302 AIPPLVSLLIYG----SSRGKKDALTTLYKLCS----LKQNKERAVSAGAVRPLVGMLA----GQGEGMAEKAMVVLSLL 369 (464)
Q Consensus 302 ~i~~Li~lL~~~----~~~v~~~A~~aL~nL~~----~~~~~~~iv~~g~v~~Lv~lL~----~~~~~v~~~A~~aL~nL 369 (464)
.+..+..++.++ ...++..|+-++++|.. ..+.+...+....++.|...|. ..+.+.+.-++.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 467777777753 45577777777776654 2222111222235666666553 34455566778888888
Q ss_pred hCCHhhHHHHHhcCcHHHHHHHHh---cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC--CHHHHHH
Q 012413 370 AGIAEGREAIVEENGIAALVEAIE---DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG--SVRAKHK 444 (464)
Q Consensus 370 a~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~ 444 (464)
.. ...+..|..++. ..+..+|..|+++|..++...+. .+-+.|+.++.+. ++++|..
T Consensus 474 g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 474 GH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred CC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHHH
Confidence 75 234566666665 23678999999999988754332 2456677777664 5688888
Q ss_pred HHHHHHH
Q 012413 445 AETLLGY 451 (464)
Q Consensus 445 A~~aL~~ 451 (464)
|..+|-.
T Consensus 536 A~~~lm~ 542 (574)
T smart00638 536 AVLVLME 542 (574)
T ss_pred HHHHHHh
Confidence 8776644
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.93 Score=51.61 Aligned_cols=129 Identities=19% Similarity=0.156 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSL 265 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~L 265 (464)
..+|+.+.+|.-+|+.+.--+.+.. ....|.|+..++ +++|.+|.++..+++.++.. +.... ..-+.|
T Consensus 934 ~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie-----~~T~~L 1003 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE-----PWTEHL 1003 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhcccccc-----hhhHHH
Confidence 4679999999999988765433222 246889999998 69999999999999999864 33222 245678
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 266 VYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 266 v~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
...|.++++.+|..|..+|.+|-.. ..|.-.|.++.+..+|.+++.+++.-|=.....|+.
T Consensus 1004 y~rL~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 1004 YRRLRDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 8889999999999999999998553 445558999999999999999999888866666655
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.2 Score=50.88 Aligned_cols=137 Identities=17% Similarity=0.124 Sum_probs=107.0
Q ss_pred ChHHHHHHhhc----CChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHh-CCHh
Q 012413 302 AIPPLVSLLIY----GSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLA-GQGEGMAEKAMVVLSLLA-GIAE 374 (464)
Q Consensus 302 ~i~~Li~lL~~----~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~-~~~~~v~~~A~~aL~nLa-~~~~ 374 (464)
..|.+++.+++ .++.++.+|.-+|+.++- +.+.++ ...|.|+..+. ++.+-++-++..+++.|+ .++.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 34666677754 378899999999999876 334332 26788999996 778889999999999998 5543
Q ss_pred hHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 375 GREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
.. +-..+.|...|.+.+..+|..|..+|.+|.. ..++.-.|.+..+..++.+++++++..|..-.+.|+
T Consensus 995 li-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLIL-----ndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 LI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLIL-----NDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHH-----hhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 22 2346678888899999999999999999984 346666899999999999999999999995444443
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.19 E-value=3.1 Score=48.82 Aligned_cols=161 Identities=10% Similarity=0.097 Sum_probs=98.3
Q ss_pred HHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHH
Q 012413 197 AAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETS 276 (464)
Q Consensus 197 A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 276 (464)
|.++...++.+.+..+.. .+.+..++..|..+.+.+|..|..+|..+..-+.. .+.....-..+..-+.+....|
T Consensus 797 a~li~~~la~~r~f~~sf---D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasV 871 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSF---DPYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASV 871 (1692)
T ss_pred HHHHHHHHHhhhHHHHhh---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHH
Confidence 444445555553322211 36788888889999999999999999999763221 1112223334445566778899
Q ss_pred HHHHHHHHHHh-cccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCC
Q 012413 277 KQNAACALMSL-ALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQG 355 (464)
Q Consensus 277 ~~~a~~aL~~L-s~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~ 355 (464)
|+.|+..++.. ..+++.-..+ ...+++-..+....||+.+...++.+|...+....+++ +...++.-+.++.
T Consensus 872 REAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~--~cakmlrRv~DEE 944 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD--MCAKMLRRVNDEE 944 (1692)
T ss_pred HHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH--HHHHHHHHhccch
Confidence 99999999853 3333332222 34566667778889999999999999996555444433 2222333333333
Q ss_pred HHHHHHHHHHHHHH
Q 012413 356 EGMAEKAMVVLSLL 369 (464)
Q Consensus 356 ~~v~~~A~~aL~nL 369 (464)
..++.-+..++.++
T Consensus 945 g~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 945 GNIKKLVRETFLKL 958 (1692)
T ss_pred hHHHHHHHHHHHHH
Confidence 33445444444444
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.02 E-value=2.9 Score=46.95 Aligned_cols=184 Identities=13% Similarity=0.070 Sum_probs=120.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccccchhhh-hccCChHHHHHH-hhcCChhhHHHHHHHHHHHhcC-cchHHHHH
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALIEENKSSI-GACGAIPPLVSL-LIYGSSRGKKDALTTLYKLCSL-KQNKERAV 339 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i-~~~g~i~~Li~l-L~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv 339 (464)
+.+-.-+.+.+..-|..|+..+........ .... ...|.+-.++.. +.+.+..+...|+.+|..|+.. ...... .
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-Y 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-H
Confidence 334444556677788888888887655433 1111 112333334443 3345888889999999999883 333222 3
Q ss_pred HcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH-HhH
Q 012413 340 SAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV-KNR 418 (464)
Q Consensus 340 ~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~ 418 (464)
..+.++.++..+.+....++..+..++-.++. ...-....+.++.++++.++.++..+...+........ ...
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 34588999999998888887777766665553 11113467788889999999999998777766654332 111
Q ss_pred HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 419 GLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
..-.-.+.++.++....+.+.+||..|..++..+.+
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 111124677888888888899999999999887654
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.79 E-value=18 Score=39.92 Aligned_cols=279 Identities=13% Similarity=0.026 Sum_probs=159.2
Q ss_pred chHHHHHHHHhcC-C-------CCHHHHHHHHHHHHHHhc--cCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 012413 175 LQPTVKICIDGLQ-S-------SSVAIKRSAAAKLRLLAK--NRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALL 244 (464)
Q Consensus 175 ~~~~v~~Lv~~L~-s-------~~~~vr~~A~~~L~~La~--~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~ 244 (464)
..+.++.++.-|. + .++.-.+.|++.+.++.. ..+.....+++.=.++.++..++++.--++..||..+.
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 4567777777772 1 244556677777777654 22222233445556777888889988899999999999
Q ss_pred HhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--cCChHHHHHHhhcCChhhHHHHH
Q 012413 245 NLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--CGAIPPLVSLLIYGSSRGKKDAL 322 (464)
Q Consensus 245 ~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Li~lL~~~~~~v~~~A~ 322 (464)
.+.. +-+....-..+.+....+|++.+-.++..|+.||.-+-.+.+....+.+ .+.++.|+.|-+.-+.++.....
T Consensus 486 ~~ee--Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vM 563 (970)
T COG5656 486 TIEE--DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM 563 (970)
T ss_pred HHHH--hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence 9843 3333333344667778888898899999999999888776544333322 23344444443333433333333
Q ss_pred HHHH-HHhc--C---cchHHHHHHcCCHHHHHHhhcCC---C---HHHHHHHHHHHHHHhC---CHhhHHHHH---hcCc
Q 012413 323 TTLY-KLCS--L---KQNKERAVSAGAVRPLVGMLAGQ---G---EGMAEKAMVVLSLLAG---IAEGREAIV---EENG 384 (464)
Q Consensus 323 ~aL~-nL~~--~---~~~~~~iv~~g~v~~Lv~lL~~~---~---~~v~~~A~~aL~nLa~---~~~~~~~i~---~~g~ 384 (464)
..+- ..+. . ++....+++ .-+.....++..+ . .+=+..|.+.|..+.. +-+++..+. +...
T Consensus 564 e~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl 642 (970)
T COG5656 564 ESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL 642 (970)
T ss_pred HHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2221 1111 0 111111121 1233344444332 1 1225556666665542 223333332 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHhhcCCCC
Q 012413 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGS-VRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 385 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~v~~~A~~aL~~L~~~~~~ 458 (464)
.|.+--.+++.-.+.-..|+..|-+.+-...+.-..+ =|+.+.|.+++.+.. ..--+.++-+|.++--+|+-
T Consensus 643 ypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pim--wgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ 715 (970)
T COG5656 643 YPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIM--WGIFELLLNLLIDEITAVYSEEVADALDNFITYGKT 715 (970)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhh--hHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
Confidence 5555566677778888899998887765433222222 245566666666665 36677888899988877743
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.76 E-value=1.7 Score=46.05 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=82.7
Q ss_pred cCcHHHHHHH-HccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHH
Q 012413 259 AGAIKSLVYV-LKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKE 336 (464)
Q Consensus 259 ~g~i~~Lv~l-L~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~ 336 (464)
.|+|..|+.. ..+++.++|+.|..+|+.+|.. +...++..+++|.. .+..||...+-+|+-.|.....+.
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~--------D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD--------DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEec--------CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 4566666665 6778999999999999987654 34467778888865 488888888888888777543221
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC--CHhhHHHHHhcCcHHHHHHHHhcC
Q 012413 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG--IAEGREAIVEENGIAALVEAIEDG 395 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~ 395 (464)
++..|-.++.+...-|++.|+.+++.+.. +++.-..+ .+.++.+.+++.+.
T Consensus 622 ------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~K 674 (926)
T COG5116 622 ------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDK 674 (926)
T ss_pred ------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhh
Confidence 45566667778888889999999998873 23221111 24455566666543
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.37 E-value=2.2 Score=44.47 Aligned_cols=153 Identities=14% Similarity=0.076 Sum_probs=99.2
Q ss_pred cCChHHHHHHh----hcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHH-HhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 300 CGAIPPLVSLL----IYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLV-GMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 300 ~g~i~~Li~lL----~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv-~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
.|.+...+..+ .+++..++..|++.|+|.+.. +..+...... .+..++ .+.+..+.+|+-+++.+|..+....
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 44444444333 456778999999999999985 4443333332 333333 4445556889999999999887533
Q ss_pred hhHHHH-HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-HHhHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHH
Q 012413 374 EGREAI-VEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES-VKNRGLLVR--EGGIPPLVALSQTGSVRAKHKAETLL 449 (464)
Q Consensus 374 ~~~~~i-~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~--~g~i~~Lv~lL~s~~~~v~~~A~~aL 449 (464)
.+.... .--.+.-.+..+..+.++++|..|...++.|+... ...+..+.+ .+...+|+-.+++.+|.+-..+...+
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~ 411 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSEL 411 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHH
Confidence 222111 11234556777788899999999999999988642 223334443 34556777778889998888777777
Q ss_pred HHhh
Q 012413 450 GYLR 453 (464)
Q Consensus 450 ~~L~ 453 (464)
+.+.
T Consensus 412 ~~c~ 415 (533)
T KOG2032|consen 412 RTCY 415 (533)
T ss_pred HhcC
Confidence 6654
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.6 Score=37.72 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=64.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH
Q 012413 344 VRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR 423 (464)
Q Consensus 344 v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 423 (464)
+...+..+.++...+|.+++..|+.|..... ...+...+++..++..|++++.-+-.+|+.+|..|+...+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~------- 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD------- 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-------
Confidence 4556777888999999999999999996544 22233357788889999999999999999999999976543
Q ss_pred cCChHHHHHhhhcC
Q 012413 424 EGGIPPLVALSQTG 437 (464)
Q Consensus 424 ~g~i~~Lv~lL~s~ 437 (464)
.+++.|++...+.
T Consensus 77 -~vl~~L~~~y~~~ 89 (92)
T PF10363_consen 77 -EVLPILLDEYADP 89 (92)
T ss_pred -HHHHHHHHHHhCc
Confidence 3566666655443
|
|
| >KOG1566 consensus Conserved protein Mo25 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.34 E-value=12 Score=36.96 Aligned_cols=196 Identities=12% Similarity=0.084 Sum_probs=137.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHh-----cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE-----SGAVPALVPLLKCSDPWTQEHSVTALLNLSLHEN 251 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~-----~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~ 251 (464)
+++..++..+...+-+.|..++.+..++-+-.-..|...++ ...+..|+.--.. .+++-..+...|....+++.
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe~ 157 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHEF 157 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhHH
Confidence 46666788888888888888887776665442222222111 2233333333111 37777777777888888888
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcc-cccchhhhhccC---ChHH-HHHHhhcCChhhHHHHHHHHH
Q 012413 252 NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLAL-IEENKSSIGACG---AIPP-LVSLLIYGSSRGKKDALTTLY 326 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g---~i~~-Li~lL~~~~~~v~~~A~~aL~ 326 (464)
..+.+.............+.++-++..-|..+...+-. |......+.... .++. --.++.+++--+++.+..+|+
T Consensus 158 LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg 237 (342)
T KOG1566|consen 158 LAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLG 237 (342)
T ss_pred HHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHH
Confidence 88888888889999999999988888888888877543 322222222221 2344 556788899999999999999
Q ss_pred HHhcCcchHHHHHH----cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 327 KLCSLKQNKERAVS----AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 327 nL~~~~~~~~~iv~----~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
.+-....|...+.. ...+..+..+|+++...+|.+|..+-.-...++
T Consensus 238 ~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 238 ELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 99887776655532 467889999999999999999999888887654
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=91.32 E-value=3.6 Score=44.62 Aligned_cols=199 Identities=18% Similarity=0.142 Sum_probs=113.0
Q ss_pred CCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHHHhc
Q 012413 172 PEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC----SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 172 ~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~----~~~~v~~~A~~aL~~La 247 (464)
..+..+.+..+.+++.+..... ..|+..+..+...-.. -....+..+..++++ ..+.++..|..+++.+.
T Consensus 352 ~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~~~-----Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv 425 (574)
T smart00638 352 QAGTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTARY-----PTEEILKALFELAESPEVQKQPYLRESALLAYGSLV 425 (574)
T ss_pred hcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhhc-----CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence 3455778888888887654221 1223333222221000 022456667777775 45678888888888886
Q ss_pred C----CCchHHHHHhcCcHHHHHHHHc----cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhh-cC--Chh
Q 012413 248 L----HENNKTLITNAGAIKSLVYVLK----TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLI-YG--SSR 316 (464)
Q Consensus 248 ~----~~~~~~~i~~~g~i~~Lv~lL~----~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~-~~--~~~ 316 (464)
. +.+..........++.|...|. ..+.+-+...+.+|+|+ +....++.|...+. +. +..
T Consensus 426 ~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~----------g~~~~i~~l~~~l~~~~~~~~~ 495 (574)
T smart00638 426 RRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA----------GHPSSIKVLEPYLEGAEPLSTF 495 (574)
T ss_pred HHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc----------CChhHHHHHHHhcCCCCCCCHH
Confidence 4 2221111122336666666554 35666778889999997 33334566666655 22 567
Q ss_pred hHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHh
Q 012413 317 GKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQ--GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIE 393 (464)
Q Consensus 317 v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~ 393 (464)
+|..|+++|..++. .+.. +-+.|+.++.+. +.++|..|..+|...- |. ...+..+.+.+.
T Consensus 496 iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~--P~-------~~~l~~ia~~l~ 558 (574)
T smart00638 496 IRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLMETK--PS-------VALLQRIAELLN 558 (574)
T ss_pred HHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHHHhcC--CC-------HHHHHHHHHHHh
Confidence 99999999998875 3322 445566666543 4666776666555331 11 234556666665
Q ss_pred c-CCHHHHHHH
Q 012413 394 D-GSVKGKEFA 403 (464)
Q Consensus 394 ~-~~~~v~~~A 403 (464)
. ++..|....
T Consensus 559 ~E~~~QV~sfv 569 (574)
T smart00638 559 KEPNLQVASFV 569 (574)
T ss_pred hcCcHHHHHHh
Confidence 3 455555443
|
|
| >KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.26 E-value=19 Score=37.03 Aligned_cols=252 Identities=13% Similarity=0.061 Sum_probs=135.0
Q ss_pred CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhcC-CCchHH-HHHhcCc
Q 012413 189 SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-----SDPWTQEHSVTALLNLSL-HENNKT-LITNAGA 261 (464)
Q Consensus 189 ~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-----~~~~v~~~A~~aL~~La~-~~~~~~-~i~~~g~ 261 (464)
++.+|...+.++|.|+..+++..+....+......+++.+.. .-.++...=...|.-+.. +.+.|. .+.+.+|
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 456889999999999999999999999988888888776533 112334444444444433 445554 5667999
Q ss_pred HHHHHHHHccC---------C------HHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc---------CChh-
Q 012413 262 IKSLVYVLKTG---------T------ETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY---------GSSR- 316 (464)
Q Consensus 262 i~~Lv~lL~~~---------~------~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~---------~~~~- 316 (464)
++.+.+.|.+. + ......++.+++|+..+...-...-.......+-.++.+ .+.+
T Consensus 189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~el 268 (532)
T KOG4464|consen 189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEEL 268 (532)
T ss_pred cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99999999752 1 123456677778887664221111111111122222211 0111
Q ss_pred ----------hHHHHHHHHHHHhcCcchHHHHHH--cCCHHHHHHhhcCC---------CHHHHHHHHHHHHHHhCCHhh
Q 012413 317 ----------GKKDALTTLYKLCSLKQNKERAVS--AGAVRPLVGMLAGQ---------GEGMAEKAMVVLSLLAGIAEG 375 (464)
Q Consensus 317 ----------v~~~A~~aL~nL~~~~~~~~~iv~--~g~v~~Lv~lL~~~---------~~~v~~~A~~aL~nLa~~~~~ 375 (464)
+....+.++...--+...-+.+-. ..-...+..+|... ..+.....+.+|..+|.....
T Consensus 269 hshav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~ 348 (532)
T KOG4464|consen 269 HSHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRV 348 (532)
T ss_pred hhccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHH
Confidence 222222222111111112222221 11233344444211 123455677888888866555
Q ss_pred HHHHHhcCcHHHHHH-----------------HHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCC
Q 012413 376 REAIVEENGIAALVE-----------------AIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGS 438 (464)
Q Consensus 376 ~~~i~~~g~i~~Lv~-----------------lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~ 438 (464)
........++|+|.+ +|...+..++..|+..|.-||..+ ++.+++...-++
T Consensus 349 ~Rkylr~qVLPPLrDV~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKes------------V~rmIKYtGyGn 416 (532)
T KOG4464|consen 349 MRKYLRQQVLPPLRDVSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKES------------VNRMIKYTGYGN 416 (532)
T ss_pred HHHHHHHhcCCchhhhhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHHHhhcc------------hhhhhhhccccc
Confidence 444444455655554 444455667777888888888654 455566665665
Q ss_pred HHHHHHHHHHHHHh
Q 012413 439 VRAKHKAETLLGYL 452 (464)
Q Consensus 439 ~~v~~~A~~aL~~L 452 (464)
.----++-++|...
T Consensus 417 aAGllA~rGll~~~ 430 (532)
T KOG4464|consen 417 AAGLLAARGLLAGG 430 (532)
T ss_pred HHHHHHhhhhhccC
Confidence 54444444444433
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.20 E-value=4.3 Score=45.63 Aligned_cols=160 Identities=11% Similarity=0.111 Sum_probs=99.5
Q ss_pred HHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--------CCHHHHHHHHHHHHHhcC---CCchHHHHHhcCcHHH
Q 012413 196 SAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--------SDPWTQEHSVTALLNLSL---HENNKTLITNAGAIKS 264 (464)
Q Consensus 196 ~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--------~~~~v~~~A~~aL~~La~---~~~~~~~i~~~g~i~~ 264 (464)
+|...|..++.... ++.+ .|.++.+++.|.+ .++.-+.-|++++++|+. .+..-+-..+.=.++.
T Consensus 391 Aa~~~l~~~~~KR~--ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h 466 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRG--KETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH 466 (1010)
T ss_pred HHHHHHHHHHHhcc--hhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 45666655554421 1111 3667777777762 457778889999998874 1222223345556778
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhh-cCChhhHHHHHHHHHHHhcCcchH-HHHHH-
Q 012413 265 LVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLI-YGSSRGKKDALTTLYKLCSLKQNK-ERAVS- 340 (464)
Q Consensus 265 Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~-~~~~~v~~~A~~aL~nL~~~~~~~-~~iv~- 340 (464)
+...++++.--+|..|||++...+.-+ .... .-..++.....+|. +.+..|+-.|+-||..+..+.+.. +.+..
T Consensus 467 VfP~f~s~~g~Lrarac~vl~~~~~~df~d~~--~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h 544 (1010)
T KOG1991|consen 467 VFPEFQSPYGYLRARACWVLSQFSSIDFKDPN--NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH 544 (1010)
T ss_pred hhHhhcCchhHHHHHHHHHHHHHHhccCCChH--HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence 888889999999999999999998321 1111 11224555566666 678889999999999998865433 33332
Q ss_pred -cCCHHHHHHhhcCCCHHHHHH
Q 012413 341 -AGAVRPLVGMLAGQGEGMAEK 361 (464)
Q Consensus 341 -~g~v~~Lv~lL~~~~~~v~~~ 361 (464)
-+.++.|+.+.+..+-+....
T Consensus 545 vp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred hhHHHHHHHHHHHhcchhHHHH
Confidence 224444555555544443333
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.98 Score=36.49 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~ 248 (464)
..+..+..|.++.+.+|..|+..|+.+..... ...+...+++..++..|+++|+-|-.+|..+|..|+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 45566778899999999999999999988865 1122235778888899999999999999999999985
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.36 E-value=3.1 Score=45.17 Aligned_cols=252 Identities=17% Similarity=0.145 Sum_probs=148.0
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHH
Q 012413 184 DGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIK 263 (464)
Q Consensus 184 ~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~ 263 (464)
..+.-.+.+.+..=..-|.... +...+.+.....++.|+..+...+ --...+..|..+.+.-+... ...+.+|
T Consensus 261 eel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p 333 (690)
T KOG1243|consen 261 EELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRIIP 333 (690)
T ss_pred HhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchhh
Confidence 3444445555444444443311 222344555566666666665544 11111122222222111001 4567899
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcC
Q 012413 264 SLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAG 342 (464)
Q Consensus 264 ~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g 342 (464)
.|+++++..|..+|..-+.-+-+...+ ....+++...+|.+..-+.+.++.+|..++.++..|+. -.++ .+...
T Consensus 334 ~l~kLF~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~---~Ln~E 408 (690)
T KOG1243|consen 334 VLLKLFKSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR---NLNGE 408 (690)
T ss_pred hHHHHhcCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh---hhcHH
Confidence 999999999999997665555543322 33456677789999999999999999999999988866 1211 11111
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcC-cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHH
Q 012413 343 AVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEEN-GIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLL 421 (464)
Q Consensus 343 ~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g-~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i 421 (464)
.+..+-.+-.+.+..++-+...||+.++.+... ..+.+ .+.+....++++-...|..+.++++.....-+...
T Consensus 409 llr~~ar~q~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~--- 482 (690)
T KOG1243|consen 409 LLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSE--- 482 (690)
T ss_pred HHHHHHhhCccccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhh---
Confidence 333333333456677788888888888754211 11333 34555556777666678888888877664321111
Q ss_pred HHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 422 VREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 422 ~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
+...+++.+.-+..+.+..+|..|..++..+-
T Consensus 483 va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 483 VANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred hhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 12346777777777788888888888776654
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.31 E-value=13 Score=40.73 Aligned_cols=108 Identities=13% Similarity=0.041 Sum_probs=78.3
Q ss_pred HcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcCHHhH
Q 012413 340 SAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAI-EDGSVKGKEFAVLTLLQLCAESVKNR 418 (464)
Q Consensus 340 ~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~~L~~~~~~~~ 418 (464)
...++|.|..-+++.+..+++.++..+..++..-+ ...+..-+++.|..+. ++.+..++.+++.|++.+.. ..
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~l 460 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RL 460 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HH
Confidence 34478899999999999999999999999986443 3344455666666664 36789999999999999982 22
Q ss_pred HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 419 GLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
+...-...+.++.+..+..++.+..+...+...+.
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 22222234566666677788988888887776654
|
|
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=90.25 E-value=9.2 Score=38.48 Aligned_cols=158 Identities=15% Similarity=0.079 Sum_probs=117.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-cCchhHHHHHhc-C-ChHHHHHhhcCC-----C--------HHHHHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAK-NRSDNRVLIGES-G-AVPALVPLLKCS-----D--------PWTQEHSV 240 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~-~~~~~r~~i~~~-g-~i~~Ll~lL~~~-----~--------~~v~~~A~ 240 (464)
+-++.+...|.+........+++.|..+.. +.......+.+. + -.+.+..++... . +.+|...+
T Consensus 56 ~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 56 NHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 447777889999888888899999999988 766666666542 2 234555555321 1 28888888
Q ss_pred HHHHHhcCC--CchHHHHH-hcCcHHHHHHHHccCCHHHHHHHHHHHHH-hcccc----cchhhhhccCChHHHHHHhhc
Q 012413 241 TALLNLSLH--ENNKTLIT-NAGAIKSLVYVLKTGTETSKQNAACALMS-LALIE----ENKSSIGACGAIPPLVSLLIY 312 (464)
Q Consensus 241 ~aL~~La~~--~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~-Ls~~~----~~~~~i~~~g~i~~Li~lL~~ 312 (464)
..+..+... +..+..+. ..+.+..+.+-|..++.++....+.+|.. +..++ ..|..+.....+..|..+...
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 888877663 45565555 46678899999999999999999999985 44442 346666677788899998877
Q ss_pred CCh----hhHHHHHHHHHHHhcCcch
Q 012413 313 GSS----RGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 313 ~~~----~v~~~A~~aL~nL~~~~~~ 334 (464)
.++ .++..+-..|..+|.++..
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCCCc
Confidence 776 8888889999998886654
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.07 E-value=19 Score=38.56 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=77.2
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
+.+.+..++..+.+.+..||..+++.|+.+...-.+. ...+-.|.+..|.+-+-+..+.||..|+.+|+.+-....+-.
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 3678899999999999999999999998887653332 233445777788877778889999999999998865332211
Q ss_pred HHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccc
Q 012413 255 LITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIE 291 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~ 291 (464)
. .....|+.+++. ++.++|..| |.|+..+.
T Consensus 168 n----~~~n~l~~~vqnDPS~EVRr~a---llni~vdn 198 (885)
T COG5218 168 N----RIVNLLKDIVQNDPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred H----HHHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence 1 123356666654 567888764 56664443
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.45 E-value=2.9 Score=39.34 Aligned_cols=148 Identities=17% Similarity=0.147 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh---cC--CCHHHHHHHHHHHHHhcCCC--chHHHHHhcCcH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL---KC--SDPWTQEHSVTALLNLSLHE--NNKTLITNAGAI 262 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL---~~--~~~~v~~~A~~aL~~La~~~--~~~~~i~~~g~i 262 (464)
...-...|+..|.-++.+ |+.+..++++..--.|...| .+ ....+|..++.+++.|.+++ +....+.....|
T Consensus 113 ~snRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv 191 (315)
T COG5209 113 ESNRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV 191 (315)
T ss_pred hhhHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence 334456777788888888 77777777765433333433 22 45678999999999999864 445566678899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc----cCCh----HHHHH-HhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA----CGAI----PPLVS-LLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~----~g~i----~~Li~-lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
|.+++.+..+++..+..|+.++..+-.++.+-+.+.. --++ ..++. +...+.....+.+.++-..|+..+.
T Consensus 192 PLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~ 271 (315)
T COG5209 192 PLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH 271 (315)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh
Confidence 9999999999999999999999887666544332221 1222 22322 2333566777778887777777666
Q ss_pred hHHHH
Q 012413 334 NKERA 338 (464)
Q Consensus 334 ~~~~i 338 (464)
.+..+
T Consensus 272 aR~lL 276 (315)
T COG5209 272 ARALL 276 (315)
T ss_pred HHHHH
Confidence 55544
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=89.42 E-value=17 Score=34.53 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=82.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHH
Q 012413 185 GLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKS 264 (464)
Q Consensus 185 ~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~ 264 (464)
.-+..++..+...+..|..++.++..+. .-++..|..+.+.+..+.+..+...+..+-...+- .. +.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-~f----~~L~~ 78 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR-HF----PFLQP 78 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-HH----HHHHH
Confidence 4456788999999999999998841221 23455566667777777766777777766543221 10 23333
Q ss_pred HHHHH--------c--cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHh-hcCChhhHHHHHHHHHHHhc
Q 012413 265 LVYVL--------K--TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL-IYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 265 Lv~lL--------~--~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL-~~~~~~v~~~A~~aL~nL~~ 330 (464)
++..+ . +...+.....+.++..++..... .-...++.+..+| .+.++.++..++.+|..||.
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 33330 1 11334555556777777765332 1122477888888 67788899999999999983
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.9 Score=42.32 Aligned_cols=142 Identities=16% Similarity=0.147 Sum_probs=99.9
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
...+...+..|.+.++..+..++..++.|+.-.++...... ...|..+++-+++....|-+.|+.++..|...-++.-.
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788999999999999999999988866554333322 24667777778888889999999999998764332211
Q ss_pred HHhcCcHHHHHH-HHcc---CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHH
Q 012413 256 ITNAGAIKSLVY-VLKT---GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKL 328 (464)
Q Consensus 256 i~~~g~i~~Lv~-lL~~---~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL 328 (464)
+ .+..++. ||.. ++.-+++.|-.+|..|..+-. ..-+++.|+..+.+.++.++..++.+..+.
T Consensus 166 --~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt------p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 166 --Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT------PQKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred --H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 1 2333333 3332 456789999999998865521 123577888888888999998888765553
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.73 E-value=1.6 Score=41.49 Aligned_cols=81 Identities=21% Similarity=0.181 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhcccccchhhhhccCChHHHHH-------Hhhc-CChhhHHHHHHHHHHHhcCcchHH--HHHHcCCH
Q 012413 275 TSKQNAACALMSLALIEENKSSIGACGAIPPLVS-------LLIY-GSSRGKKDALTTLYKLCSLKQNKE--RAVSAGAV 344 (464)
Q Consensus 275 ~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~-------lL~~-~~~~v~~~A~~aL~nL~~~~~~~~--~iv~~g~v 344 (464)
.-|..|+.+|+.|+..+.|.+.+...+-+..+-+ +|.. +++..|+.|...|.+|+..++... .-.+.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4588999999999999999999988876665443 3333 588899999999999999665433 33468899
Q ss_pred HHHHHhhcCCC
Q 012413 345 RPLVGMLAGQG 355 (464)
Q Consensus 345 ~~Lv~lL~~~~ 355 (464)
..|+.++.+..
T Consensus 219 ~~Li~FiE~a~ 229 (257)
T PF12031_consen 219 SHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999997643
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.70 E-value=3.5 Score=40.56 Aligned_cols=141 Identities=13% Similarity=0.136 Sum_probs=92.9
Q ss_pred ChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHH
Q 012413 302 AIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAI 379 (464)
Q Consensus 302 ~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i 379 (464)
++...+..|.+.+...+-.++..+..|+. +++....+..+ .+-.+++-++.....|-..|+.+++.|... ......
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34556667777778888888888888887 55555444443 667778888888899999999999988743 222222
Q ss_pred HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 012413 380 VEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGY 451 (464)
Q Consensus 380 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~ 451 (464)
.-.+.+-.|+.--..++.-+++.|-.+|-.+..+-.. ..+++.|+..+++.++.++..++...-+
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 1122222222222234566899999999998865322 2356778888888888888887755433
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=88.45 E-value=23 Score=33.66 Aligned_cols=137 Identities=22% Similarity=0.189 Sum_probs=84.4
Q ss_pred hHHHHH-hhcCCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhh
Q 012413 221 VPALVP-LLKCSDPWTQEHSVTALLNLSLHE-NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG 298 (464)
Q Consensus 221 i~~Ll~-lL~~~~~~v~~~A~~aL~~La~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~ 298 (464)
++.|+. +-+..+++++...+.+|..++.+. ..... .+..|..+...+....+.-+...+..+-...+ +. .
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~--f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RH--F 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hH--H
Confidence 344544 445589999999999999999887 44333 45556666777777665555555555432211 10 0
Q ss_pred ccCChHHHHHH--hh------cC--ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhh-cCCCHHHHHHHHHHHH
Q 012413 299 ACGAIPPLVSL--LI------YG--SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGML-AGQGEGMAEKAMVVLS 367 (464)
Q Consensus 299 ~~g~i~~Li~l--L~------~~--~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL-~~~~~~v~~~A~~aL~ 367 (464)
+.+..++.. ++ ++ ..+.....+.++..+|...++ .....++.+..+| .+.++.++..++.+|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 223333333 01 11 223444445677788875544 2223667888888 7778888999999999
Q ss_pred HHhC
Q 012413 368 LLAG 371 (464)
Q Consensus 368 nLa~ 371 (464)
.|+.
T Consensus 148 ~Lc~ 151 (234)
T PF12530_consen 148 PLCE 151 (234)
T ss_pred HHHH
Confidence 9994
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.98 E-value=18 Score=37.66 Aligned_cols=144 Identities=15% Similarity=0.024 Sum_probs=91.7
Q ss_pred hHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHH-HHHHHHhCCHhhHHHHH
Q 012413 303 IPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAM-VVLSLLAGIAEGREAIV 380 (464)
Q Consensus 303 i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~-~aL~nLa~~~~~~~~i~ 380 (464)
+-.+++.|.+ .+...++-|++.|..++.+...+-.=-.+-++..+++.-.+.+.++...|. .++.-++.+...
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~----- 405 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL----- 405 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch-----
Confidence 4456677777 688899999999999998665432212234667777777777776655554 445555544332
Q ss_pred hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 381 EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 381 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
-.|..+..++...+...-..++.++-.|+..-..--..-.--.+.|.++....+.+..||+.|.-.|-.+.
T Consensus 406 --~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 406 --QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred --hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 23444555555566666666666777766432111111112467899999999999999999988776554
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.88 E-value=3.7 Score=44.58 Aligned_cols=193 Identities=12% Similarity=0.053 Sum_probs=122.4
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
.++....+|.|+..+.-++. -...+..+..+...-+... ...+.+|.|++|+...+..+|..-+.=+-+... ..
T Consensus 288 ~i~~~kvlp~Ll~~~~~g~a--~~~~ltpl~k~~k~ld~~e--yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~--~L 361 (690)
T KOG1243|consen 288 EIIASKVLPILLAALEFGDA--ASDFLTPLFKLGKDLDEEE--YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID--HL 361 (690)
T ss_pred HHHHHHHHHHHHHHhhcccc--chhhhhHHHHhhhhccccc--cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh--hc
Confidence 34445566777776666651 1111222222222211111 556789999999999999999765554443332 23
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 335 KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
-..+++...+|.+..-+.+.++.+++..+.++..|+.--..+ .+....+..+-.+-.+.+..+|.+...||+.++.+.
T Consensus 362 t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l 439 (690)
T KOG1243|consen 362 TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL 439 (690)
T ss_pred CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeeccccccc
Confidence 345677779999999999999999999999999988421111 222223444444444677889999999999998763
Q ss_pred HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCC
Q 012413 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 415 ~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~ 458 (464)
.. ..+..-.+..+.+.++++-...|..+.+++....++-..
T Consensus 440 ~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~ 480 (690)
T KOG1243|consen 440 AA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ 480 (690)
T ss_pred ch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch
Confidence 21 223344556666677777778888888888776655443
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.63 E-value=9.8 Score=35.89 Aligned_cols=145 Identities=18% Similarity=0.085 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcccccchhhhhccCChHHHHHHhh---c--CChhhHHHHHHHHHHHhcCc--chHHHHHHcCCHHHHHH
Q 012413 277 KQNAACALMSLALIEENKSSIGACGAIPPLVSLLI---Y--GSSRGKKDALTTLYKLCSLK--QNKERAVSAGAVRPLVG 349 (464)
Q Consensus 277 ~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~---~--~~~~v~~~A~~aL~nL~~~~--~~~~~iv~~g~v~~Lv~ 349 (464)
..+|+..|--++.+++.|..+.++..--.|...|. + .....|..++++++.|.+++ .....+....++|.++.
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 34666777778899999999988764223333333 2 24568889999999999954 34455567889999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh----cCc----HHHHHHH-HhcCCHHHHHHHHHHHHHHhhcCHHhHHH
Q 012413 350 MLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE----ENG----IAALVEA-IEDGSVKGKEFAVLTLLQLCAESVKNRGL 420 (464)
Q Consensus 350 lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~----~g~----i~~Lv~l-L~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 420 (464)
++....+-.+.-|+.++..+-+++.+-+.+.. --+ ...++.. ....+.++-..+.++-..|+. .+..|..
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd-~p~aR~l 275 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD-KPHARAL 275 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC-CHhHHHH
Confidence 99887777777888888888877766554433 222 3333333 334677888888888888874 4555554
Q ss_pred HH
Q 012413 421 LV 422 (464)
Q Consensus 421 i~ 422 (464)
+.
T Consensus 276 L~ 277 (315)
T COG5209 276 LS 277 (315)
T ss_pred Hh
Confidence 43
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=87.44 E-value=33 Score=34.99 Aligned_cols=232 Identities=19% Similarity=0.127 Sum_probs=129.0
Q ss_pred ChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHH-hcccccchhh
Q 012413 220 AVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTG-TETSKQNAACALMS-LALIEENKSS 296 (464)
Q Consensus 220 ~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~-Ls~~~~~~~~ 296 (464)
-|..++.=|+. ....+|+.++.-|+.-+.++..+..+...|.+..+++.+.+. +..+...++.++.. ++.+...-..
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 45566666653 556789999999999999999999999999999999999554 33255444445544 4444334444
Q ss_pred hhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhh---c------CCCHHHHHHHHHHH
Q 012413 297 IGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGML---A------GQGEGMAEKAMVVL 366 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL---~------~~~~~v~~~A~~aL 366 (464)
+.+.+....++.++.-. ...+..... .....+..++. .+.+..+...+ . ......+.-|..+|
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~l 174 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLAL 174 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHHH
Confidence 44555566668887711 000000000 00000111111 11111111222 0 11122355566666
Q ss_pred HHHhC---------------CHhhHHHHHhcCcHHHHHHHHhc----C------------CHHHHHHHHHHHHHHhhcCH
Q 012413 367 SLLAG---------------IAEGREAIVEENGIAALVEAIED----G------------SVKGKEFAVLTLLQLCAESV 415 (464)
Q Consensus 367 ~nLa~---------------~~~~~~~i~~~g~i~~Lv~lL~~----~------------~~~v~~~A~~aL~~L~~~~~ 415 (464)
..++. .+-.++.+.+.|++..+++.+.+ . +...-..+..+|-+.+..++
T Consensus 175 e~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~ 254 (361)
T PF07814_consen 175 ESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSE 254 (361)
T ss_pred HHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCc
Confidence 65530 12347778888999999999862 1 11234468888888887777
Q ss_pred HhHHHHHHc--CChHHHH-HhhhcCC---HHHHHHHHHHHHHhhcCCCC
Q 012413 416 KNRGLLVRE--GGIPPLV-ALSQTGS---VRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 416 ~~~~~i~~~--g~i~~Lv-~lL~s~~---~~v~~~A~~aL~~L~~~~~~ 458 (464)
.++..+... +.+..+. .++..-. ......+.+.+-|++-+.++
T Consensus 255 ~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~ 303 (361)
T PF07814_consen 255 ENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS 303 (361)
T ss_pred cchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc
Confidence 777765553 3333333 3333322 24455667777777765544
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species | Back alignment and domain information |
|---|
Probab=86.98 E-value=26 Score=33.73 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=58.8
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhh--hccCChHHHHHHhhcC--ChhhHHHHHHHHHHHhc-C
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSI--GACGAIPPLVSLLIYG--SSRGKKDALTTLYKLCS-L 331 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i--~~~g~i~~Li~lL~~~--~~~v~~~A~~aL~nL~~-~ 331 (464)
.+..+.|+|+++++.++..+-...--++. ++....+ +-.|-++.|-+++.++ +..+|..|+.+|..++. +
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~t-----E~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~ 144 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFIT-----EDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEG 144 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhH-----hHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcC
Confidence 45679999999998766521111000000 0111111 2367789999999987 66799999999999998 5
Q ss_pred cchHHHHHHcCCHHHHHHh-hcCCCHH
Q 012413 332 KQNKERAVSAGAVRPLVGM-LAGQGEG 357 (464)
Q Consensus 332 ~~~~~~iv~~g~v~~Lv~l-L~~~~~~ 357 (464)
+..|+.+++ .+..++.. +...+..
T Consensus 145 ~~~Re~vi~--~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 145 PISREEVIQ--YFRELLNYFLERNPSF 169 (249)
T ss_pred CCCHHHHHH--HHHHHHHHHhccCchH
Confidence 566777776 45555554 4444343
|
The function of this family is unknown. |
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=86.90 E-value=36 Score=34.17 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=111.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcC-CC-chHHHHHh--cCcHHHHHHHHccC-----C--------HHHHHHHHHH
Q 012413 221 VPALVPLLKCSDPWTQEHSVTALLNLSL-HE-NNKTLITN--AGAIKSLVYVLKTG-----T--------ETSKQNAACA 283 (464)
Q Consensus 221 i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~-~~~~~i~~--~g~i~~Lv~lL~~~-----~--------~~v~~~a~~a 283 (464)
++.+...|....+.+...++..|..+.. +. .....+.. .-..+.|.+++... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7888899999889999999999999988 54 44444443 33455666666431 1 2788888888
Q ss_pred HHHhccc--ccchhhhhc-cCChHHHHHHhhcCChhhHHHHHHHHHH-HhcCc----chHHHHHHcCCHHHHHHhhcCCC
Q 012413 284 LMSLALI--EENKSSIGA-CGAIPPLVSLLIYGSSRGKKDALTTLYK-LCSLK----QNKERAVSAGAVRPLVGMLAGQG 355 (464)
Q Consensus 284 L~~Ls~~--~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~A~~aL~n-L~~~~----~~~~~iv~~g~v~~Lv~lL~~~~ 355 (464)
+..+... +..+..+.+ .+.+..+.+-|..++.++....+.+|.. +...+ ..+-.+..+..+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 7776654 455666655 6667888888888888999999999985 44433 24455566778889999887777
Q ss_pred H----HHHHHHHHHHHHHhCCH
Q 012413 356 E----GMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 356 ~----~v~~~A~~aL~nLa~~~ 373 (464)
+ .+...+-..|..+|..+
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 7 78888999999998644
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.72 E-value=50 Score=35.61 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=69.9
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHH
Q 012413 259 AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERA 338 (464)
Q Consensus 259 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~i 338 (464)
+|.+..+++-+.+++..+|..++..|+-++..-.--+...-.|.+..|.+.+-+..+.||+.|+.+|+.+-....+-+..
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 46778888888899999999999999988654222223444566777778888889999999999999886543332222
Q ss_pred HHcCCHHHHHHhhc-CCCHHHHHHHH
Q 012413 339 VSAGAVRPLVGMLA-GQGEGMAEKAM 363 (464)
Q Consensus 339 v~~g~v~~Lv~lL~-~~~~~v~~~A~ 363 (464)
.+-.|+.+++ ++..+|+..|+
T Consensus 170 ----~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 170 ----IVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred ----HHHHHHHHHhcCcHHHHHHHHH
Confidence 2235666665 44556666544
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.78 E-value=13 Score=40.35 Aligned_cols=166 Identities=18% Similarity=0.192 Sum_probs=105.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH---hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhc
Q 012413 183 IDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG---ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNA 259 (464)
Q Consensus 183 v~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~---~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~ 259 (464)
+..+..-.++.+.-|+.+|+.+..|..-+-..+- ....+..++..+. .++..+..++++|.|+-.++-+++.+...
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~ 628 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR 628 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4444555677788899999999888655433332 2335666666666 67888999999999999988777776642
Q ss_pred --CcHHHHHHHHccCCHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHhhcC-----ChhhHHHHHHHHHHHhc
Q 012413 260 --GAIKSLVYVLKTGTETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLLIYG-----SSRGKKDALTTLYKLCS 330 (464)
Q Consensus 260 --g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL~~~-----~~~v~~~A~~aL~nL~~ 330 (464)
-.+..++..=..++..++...+....|.+.. ..+- +.|+.+.+..++... +-+.....+-||++|+.
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 2233333333334566766666666665432 2211 145556555555431 33455667889999999
Q ss_pred CcchHHHHHHcCCHHHHHHhhcC
Q 012413 331 LKQNKERAVSAGAVRPLVGMLAG 353 (464)
Q Consensus 331 ~~~~~~~iv~~g~v~~Lv~lL~~ 353 (464)
.+....++...-.+..+..-+++
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHHHH
Confidence 88887777766666666666654
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.49 E-value=15 Score=40.15 Aligned_cols=176 Identities=16% Similarity=0.066 Sum_probs=107.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcc--cc----cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-Ccc-
Q 012413 262 IKSLVYVLKTGTETSKQNAACALMSLAL--IE----ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQ- 333 (464)
Q Consensus 262 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~--~~----~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~- 333 (464)
-|.|.+-|+-.+..||.+|+..+.++=- ++ +..+.+.+.. +..|.+||.++-+.+|..|..-++.+.. .=+
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3556667778899999999999998642 22 2244444433 7789999999999999888776665533 100
Q ss_pred hHHHHHHcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGML-AGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
.-..++. ..+..++.-+ .+...+|+-.....|-.|..++..-..+- -++++|-..|.+.+..||..+...|..|-.
T Consensus 255 iP~~i~~-~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 255 IPPTILI-DLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred cCHHHHH-HHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 0000110 0111222211 34456788888889998888775443332 246677788889999999999999988754
Q ss_pred cCHHhHHHHHHcCChHHHHHhhhcCCHHHHHH
Q 012413 413 ESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444 (464)
Q Consensus 413 ~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~ 444 (464)
.. ...++.---...++.-|..++..|.+.
T Consensus 332 vr---a~~f~~I~~~d~~l~~L~~d~~~v~rr 360 (1005)
T KOG1949|consen 332 VR---AAKFWKICPMDHILVRLETDSRPVSRR 360 (1005)
T ss_pred hh---hhhhhccccHHHHHHHHhccccHHHHH
Confidence 31 112333223444555555554444333
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=85.17 E-value=2.5 Score=40.13 Aligned_cols=81 Identities=27% Similarity=0.292 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHhcCcchHHHHHHcC-------CHHHHHHhhcCC-CHHHHHHHHHHHHHHhCCHh-hH-HHHHhcCcH
Q 012413 316 RGKKDALTTLYKLCSLKQNKERAVSAG-------AVRPLVGMLAGQ-GEGMAEKAMVVLSLLAGIAE-GR-EAIVEENGI 385 (464)
Q Consensus 316 ~v~~~A~~aL~nL~~~~~~~~~iv~~g-------~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~-~~-~~i~~~g~i 385 (464)
.-++.|+.+|+.|+..+.|.+.++..+ .+..|+.+|... +.-.++.|+..|.+|+..++ .. ..-.+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 358899999999999998888775443 455666666544 45569999999999995443 33 334457899
Q ss_pred HHHHHHHhcCC
Q 012413 386 AALVEAIEDGS 396 (464)
Q Consensus 386 ~~Lv~lL~~~~ 396 (464)
..|+.++.+.+
T Consensus 219 ~~Li~FiE~a~ 229 (257)
T PF12031_consen 219 SHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999997643
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.98 E-value=69 Score=35.65 Aligned_cols=217 Identities=13% Similarity=0.055 Sum_probs=114.1
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhh
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG 298 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~ 298 (464)
.+.-.+.++.++.++.+|+..-.++..++.-.+..-. +...|.+-.....+..+..|+.+|+.+...
T Consensus 64 e~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvii-----vtsslmkD~t~~~d~yr~~AiR~L~~I~d~-------- 130 (865)
T KOG1078|consen 64 ELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVII-----VTSSLMKDMTGKEDLYRAAAIRALCSIIDG-------- 130 (865)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhhh-----hhHHHHhhccCCCcchhHHHHHHHHhhcCc--------
Confidence 3455677888999999999999999999874332111 233344444445667788888888887433
Q ss_pred ccCChHHHHHHhh----cCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH-
Q 012413 299 ACGAIPPLVSLLI----YGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA- 373 (464)
Q Consensus 299 ~~g~i~~Li~lL~----~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~- 373 (464)
|-+...-+.++ +.++.+...|+-.=.+|........+=...+ ......+.+.-+|.+|++.|+.+-.++
T Consensus 131 --~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~ne----iqea~~s~~~m~QyHalglLyqirk~dr 204 (865)
T KOG1078|consen 131 --TMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANE----VQEAVNSDNIMVQYHALGLLYQIRKNDR 204 (865)
T ss_pred --chhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHh----hhhccCcHHHHHHHHHHHHHHHHHhhhH
Confidence 22222222221 2233333222221112211111100000000 001111111223344444444332111
Q ss_pred -----------------hhHH---------HHHh-cCcHHHHHH----HHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHH
Q 012413 374 -----------------EGRE---------AIVE-ENGIAALVE----AIEDGSVKGKEFAVLTLLQLCAESVKNRGLLV 422 (464)
Q Consensus 374 -----------------~~~~---------~i~~-~g~i~~Lv~----lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~ 422 (464)
..+. .+-+ ..+..++.. ++.+...-+...|+.++.+|...... .+
T Consensus 205 la~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l- 280 (865)
T KOG1078|consen 205 LAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---EL- 280 (865)
T ss_pred HHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hc-
Confidence 0000 0001 233334444 44466788899999999999865432 11
Q ss_pred HcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCC
Q 012413 423 REGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 423 ~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~ 459 (464)
...+..|.-++.+..+-+|.+|.+.|..++--.++.
T Consensus 281 -~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 281 -APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred -chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc
Confidence 127888899999999999999999999988755543
|
|
| >PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning | Back alignment and domain information |
|---|
Probab=84.55 E-value=8.4 Score=31.48 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=55.1
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHH
Q 012413 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACAL 284 (464)
Q Consensus 217 ~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 284 (464)
..+.+..|+..+..+.+-....++..|..+..++.....+.+-|++..|-++-..-++..+...-..+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34667778888888777789999999999999999999999999999988877666776666554444
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=84.43 E-value=12 Score=33.61 Aligned_cols=111 Identities=22% Similarity=0.174 Sum_probs=72.3
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhc--CChHHHHHhhcC-CCHHHHHHHHHHHHHhcC--
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGES--GAVPALVPLLKC-SDPWTQEHSVTALLNLSL-- 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~--g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~-- 248 (464)
.+...+..+...|++.+++.|..++..+......++ .+.+.+. .-+..|+..|+. +.+.+.+.++.+|..|-.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 345667777888999999999999999988887642 2344332 347788888988 456778888888888743
Q ss_pred --CCchHHHHHh---cCcHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 012413 249 --HENNKTLITN---AGAIKSLVYVLKTGTETSKQNAACALMSLA 288 (464)
Q Consensus 249 --~~~~~~~i~~---~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls 288 (464)
.++....+.- .+.++.++.+++. ......++.+|..+-
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 2443334332 2344555555554 455566666666654
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=84.09 E-value=5 Score=35.15 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=64.0
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcC
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNR-SDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~-~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~ 248 (464)
+...++..|.+.|++.++.++..|+..|-.+.++. ......+.+.+.+..|+.++.. .++.|+..++..+..-+.
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999884 5567778888999999999974 788999999999877663
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=84.01 E-value=40 Score=32.78 Aligned_cols=210 Identities=13% Similarity=0.061 Sum_probs=124.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCchHHHHHhc
Q 012413 182 CIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLHENNKTLITNA 259 (464)
Q Consensus 182 Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~~~~~~i~~~ 259 (464)
|=..|.++++.+|..|+..|..+...-+.. .....-+..|+..+-+ .|......++.+|..|........
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~----- 75 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP----- 75 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh-----
Confidence 345678899999999999998887664432 1233446666666544 566666666777777775432111
Q ss_pred CcHHHHHH-HHcc-----CCHHHHHHHHHHHHHhcccccchhhhhc--cCChHHHHHHhhcC-ChhhHHHHHHHHHHHhc
Q 012413 260 GAIKSLVY-VLKT-----GTETSKQNAACALMSLALIEENKSSIGA--CGAIPPLVSLLIYG-SSRGKKDALTTLYKLCS 330 (464)
Q Consensus 260 g~i~~Lv~-lL~~-----~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~ 330 (464)
+....+++ +.+. -....|..+...|..|..+. ...+.+ .+.+..+++++..+ ||+....+...+..+..
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 11222222 2222 23467778888887775442 222222 34567777777765 89988888888887766
Q ss_pred CcchHHHHHHcCCHHHHHHhhcC---------C-CH-HH-HHHHHH-HHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCH
Q 012413 331 LKQNKERAVSAGAVRPLVGMLAG---------Q-GE-GM-AEKAMV-VLSLLAGIAEGREAIVEENGIAALVEAIEDGSV 397 (464)
Q Consensus 331 ~~~~~~~iv~~g~v~~Lv~lL~~---------~-~~-~v-~~~A~~-aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 397 (464)
.=+. ....+.+.+.+.. + ++ .+ ++.-.. ....|+.++.. ..-+++.|++-|.+++.
T Consensus 154 ~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~ 222 (262)
T PF14500_consen 154 EFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSP 222 (262)
T ss_pred hccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCc
Confidence 2221 2233344444421 1 11 11 222222 23333343322 23578999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 012413 398 KGKEFAVLTLLQLCA 412 (464)
Q Consensus 398 ~v~~~A~~aL~~L~~ 412 (464)
.++.-++.+|...+.
T Consensus 223 ~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 223 SVKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=83.87 E-value=7.7 Score=33.46 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=63.3
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCch-hHHHHHhcCChHHHHHhhcC---CCHHHHHHHHHHHHHhcC
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSD-NRVLIGESGAVPALVPLLKC---SDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~-~r~~i~~~g~i~~Ll~lL~~---~~~~v~~~A~~aL~~La~ 248 (464)
+...++..|.+.|+++++.++..|+..|-.+.++... ....+.....+..|+.++.. .++.|+..++..+...+.
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4467889999999999999999999999999998765 66677676888889999875 578999999999988764
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=83.67 E-value=29 Score=31.73 Aligned_cols=142 Identities=14% Similarity=0.080 Sum_probs=88.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC--chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchh
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHE--NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKS 295 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~ 295 (464)
..++.++++..+++..++..|+..|.-+.+.- .. ...+|.|+.|..++++.++..|...+..+... +..-.
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP------~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP------KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh------HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 45677888888999999999999997665310 11 12689999999999999999999999998643 22111
Q ss_pred hhhccCChHHHHHHhhc--CCh--hh---HHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCC--------CHHHH
Q 012413 296 SIGACGAIPPLVSLLIY--GSS--RG---KKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQ--------GEGMA 359 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~~--~~~--~v---~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~--------~~~v~ 359 (464)
.=. ..|+..-.+.-.. ++. .. ...-+..|+.+.. ....+.+++. .|++.+... ...-.
T Consensus 82 ~~~-~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 82 SRY-SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHH-HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH-----HHHHHHHhhccccccccchhHH
Confidence 111 1134443333222 111 11 5566777778877 4566777654 444444332 23345
Q ss_pred HHHHHHHHHHhCC
Q 012413 360 EKAMVVLSLLAGI 372 (464)
Q Consensus 360 ~~A~~aL~nLa~~ 372 (464)
.....+..|||..
T Consensus 156 ~~~~Fla~nLA~l 168 (187)
T PF12830_consen 156 DFLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHHhcC
Confidence 5666677777753
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.32 E-value=25 Score=38.58 Aligned_cols=149 Identities=9% Similarity=0.046 Sum_probs=94.3
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh----cCCCHHHHHHHHHHHHHhcCCC
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL----KCSDPWTQEHSVTALLNLSLHE 250 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL----~~~~~~v~~~A~~aL~~La~~~ 250 (464)
+++....+.++|.++-+.||-.|..-+..+... .+..+-..-.++.|-... .+...+||......|-.+..+|
T Consensus 218 ~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np 294 (1005)
T KOG1949|consen 218 IQKQFEELYSLLEDPYPMVRSTAILGVCKITSK---FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP 294 (1005)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc
Confidence 357788889999999999999998887665532 333332222222222222 2345688888888898888776
Q ss_pred chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 251 NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 251 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
..-.. .+ -++|.|=..|.+..+.||..+...|..|=.+... .+.+--....++..|..++..+.+.-+..|.+.+-
T Consensus 295 ~sh~~-le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~--~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 295 LSHPL-LE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAA--KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL 370 (1005)
T ss_pred cchhH-HH-HHHHhcchhhhccchhHHHHHHHHHHHHHhhhhh--hhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 54322 22 2566777788899999999999888877322111 11112234456666777776766666666666554
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=83.22 E-value=11 Score=34.61 Aligned_cols=137 Identities=18% Similarity=0.200 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCCCchHHHH------H-hc------CcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc----hhhh
Q 012413 235 TQEHSVTALLNLSLHENNKTLI------T-NA------GAIKSLVYVLKTGTETSKQNAACALMSLALIEEN----KSSI 297 (464)
Q Consensus 235 v~~~A~~aL~~La~~~~~~~~i------~-~~------g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~----~~~i 297 (464)
+|..|+.+|..+++.-+.|... . +. ...+.+.-++.++++.+|..|+.+|..|-..... .+.-
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 6778888888888763333211 1 11 2344556677889999999999999988654211 0000
Q ss_pred -hccCCh---------------HHHHHHhhcC-ChhhHHHHHHHHHHHhcCc-chH--HHHHHcCCHHHHHHhhcCCCHH
Q 012413 298 -GACGAI---------------PPLVSLLIYG-SSRGKKDALTTLYKLCSLK-QNK--ERAVSAGAVRPLVGMLAGQGEG 357 (464)
Q Consensus 298 -~~~g~i---------------~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~-~~~--~~iv~~g~v~~Lv~lL~~~~~~ 357 (464)
...+.+ ..|+..|..+ +..+....+.+|..|.... -.+ ..++. ..+..+..++.+.+.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRDPN 160 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhcCCCc
Confidence 011122 2344455554 7778889999999998844 333 22222 2445555667788999
Q ss_pred HHHHHHHHHHHHhCC
Q 012413 358 MAEKAMVVLSLLAGI 372 (464)
Q Consensus 358 v~~~A~~aL~nLa~~ 372 (464)
++..++.+++.+...
T Consensus 161 v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 161 VRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999988753
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.18 E-value=11 Score=41.20 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHH
Q 012413 189 SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVY 267 (464)
Q Consensus 189 ~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ 267 (464)
.|+..+..|--+|..+.--+.+. . ..-+|.|+..++ +++|.+|.+|+..|+.++-.-.. . ....-..|.+
T Consensus 908 sd~~lq~aA~l~L~klMClS~~f---c--~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~---~-~de~t~yLyr 978 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEF---C--SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT---T-ADEHTHYLYR 978 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHH---H--HHHHHHHHHHHhhCCCcceeccceeeccccceehhh---h-hHHHHHHHHH
Confidence 68889999988886654322211 1 245788888887 79999999999999988643111 0 1123456778
Q ss_pred HHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 268 VLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 268 lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
-|.+.+..||..+.-++.+|-.. ..+.-.|-.+.++.+|.+++.++..-|-..+..+++-+
T Consensus 979 rL~De~~~V~rtclmti~fLila----gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 979 RLGDEDADVRRTCLMTIHFLILA----GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HhcchhhHHHHHHHHHHHHHHHc----cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 88899999999999999987432 23334678899999999999999998888888887743
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=83.03 E-value=26 Score=35.88 Aligned_cols=207 Identities=18% Similarity=0.138 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHH
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-----SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLV 266 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-----~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv 266 (464)
.++.+++..+...+...++.-..++. ..+..+.++|.. ....+...|..-|..++..+..+..+...+.++.|+
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 46667777776666554433222222 344555555543 224566677777777665443322222222222222
Q ss_pred H---------------HHcc-------------CCHHHHHHHHHHHHHhccccc-chhhhhccCChHHHHHHhh------
Q 012413 267 Y---------------VLKT-------------GTETSKQNAACALMSLALIEE-NKSSIGACGAIPPLVSLLI------ 311 (464)
Q Consensus 267 ~---------------lL~~-------------~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~~g~i~~Li~lL~------ 311 (464)
. +..+ +...-|..|+..|..|+..-+ ....+ ....+-.+|.
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y~~~~ 265 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQYASNP 265 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-T
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHhhCC
Confidence 2 1111 112356688888888876521 11111 0122223333
Q ss_pred cCChhhHHHHHHHHHHHhcCcc-------------hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHH
Q 012413 312 YGSSRGKKDALTTLYKLCSLKQ-------------NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREA 378 (464)
Q Consensus 312 ~~~~~v~~~A~~aL~nL~~~~~-------------~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 378 (464)
+.+..-+..|+..++.|+.... +...+...-++|.|. -=....+-++..|++.+......- ..+.
T Consensus 266 ~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~ 343 (370)
T PF08506_consen 266 SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQ 343 (370)
T ss_dssp TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHH
T ss_pred cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHH
Confidence 2366778889999999977331 234455555666665 111234556777777777766421 1222
Q ss_pred HHhcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 012413 379 IVEENGIAALVEAIEDGSVKGKEFAVLTL 407 (464)
Q Consensus 379 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 407 (464)
+ .++++.++.+|.+++.-|...|+.|+
T Consensus 344 l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 344 L--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp H--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2 34899999999999999999999875
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=82.94 E-value=6.6 Score=33.91 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=62.0
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcC
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNR-SDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~-~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~ 248 (464)
+...++..|.+.|++.++.++..|+..|-.+.++. ......+.+.+++..|..++.. ..+.|+..++..+..-+.
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999884 5566777788899999999887 334589998888877653
|
Unpublished observations. Domain of unknown function. |
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=82.76 E-value=15 Score=43.52 Aligned_cols=145 Identities=13% Similarity=0.070 Sum_probs=93.9
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~ 254 (464)
.+-++.++..|.++...+|-.|++||..+...++... ....+-..+-.-+.+....||+.|+..++.... +++.-.
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 4678888999999999999999999999987755422 122333444555667788999999999997654 445433
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
. ....+..-..+....||..+...+..++.....-..+. .....++....++...+++-++.++.++.-
T Consensus 892 q-----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~--~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 892 Q-----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV--DMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred H-----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH--HHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 3 23345666667888999999999999986532211111 011222222233333366666666666644
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=82.74 E-value=15 Score=33.59 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=81.6
Q ss_pred ChHHHHHHhhcCChhhHHHHHHHHHHHhcCc-chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHH
Q 012413 302 AIPPLVSLLIYGSSRGKKDALTTLYKLCSLK-QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAI 379 (464)
Q Consensus 302 ~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i 379 (464)
.++.+++++.+.+..++..|+..+.-+.+.. -+- ...+|.|+.+..++++.++..|...+..+. .++..-..=
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3678888999999999999999998764421 000 117899999999999999999999999998 444433332
Q ss_pred HhcCcHHHHHHHHhc--CCHH--H---HHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc
Q 012413 380 VEENGIAALVEAIED--GSVK--G---KEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 380 ~~~g~i~~Lv~lL~~--~~~~--v---~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s 436 (464)
..+| +..-.++-.. ++.. . ...-..-|..+...+...|..+ +..|++.+..
T Consensus 84 ~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~ 141 (187)
T PF12830_consen 84 YSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDF 141 (187)
T ss_pred HHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHh
Confidence 2233 4433333332 1111 1 4556666777777666777765 5555555544
|
|
| >KOG1566 consensus Conserved protein Mo25 [Function unknown] | Back alignment and domain information |
|---|
Probab=82.62 E-value=54 Score=32.58 Aligned_cols=221 Identities=14% Similarity=0.062 Sum_probs=145.0
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHh-----cCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 012413 213 VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITN-----AGAIKSLVYVLKTGTETSKQNAACALMS 286 (464)
Q Consensus 213 ~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~-----~g~i~~Lv~lL~~~~~~v~~~a~~aL~~ 286 (464)
+.+-++|.+..|+..+..-+-+.+..++.+..++-.- -+.+...++ ...+..|+.--.. .+++...+-..|..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence 4566789999999999998888899998888888653 233332222 2334444443111 35555555555555
Q ss_pred hcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcC---CHHH-HHHhhcCCCHHHHHH
Q 012413 287 LALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAG---AVRP-LVGMLAGQGEGMAEK 361 (464)
Q Consensus 287 Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g---~v~~-Lv~lL~~~~~~v~~~ 361 (464)
-..++.....+....-+......+..++=.+...|..+...+.. ++.....+.... -++. --.++.+.+--.+..
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 55666666667777777777777777776777788888877765 544444444322 2233 455667766667899
Q ss_pred HHHHHHHHhCCHhh----HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH---HhHHHHHHcCChHHHHHhh
Q 012413 362 AMVVLSLLAGIAEG----REAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV---KNRGLLVREGGIPPLVALS 434 (464)
Q Consensus 362 A~~aL~nLa~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~---~~~~~i~~~g~i~~Lv~lL 434 (464)
+..+|+.+-....+ .+.+-+...+..++.+|++++..+|-.|-...+-..+... .-...+.... +.|++++
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr--~KLl~~l 309 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNR--PKLLELL 309 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCc--HHHHHHH
Confidence 99999998754333 4444556789999999999999999999999988886532 2233444432 5555555
Q ss_pred hc
Q 012413 435 QT 436 (464)
Q Consensus 435 ~s 436 (464)
..
T Consensus 310 ~~ 311 (342)
T KOG1566|consen 310 HD 311 (342)
T ss_pred HH
Confidence 43
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=82.46 E-value=21 Score=32.65 Aligned_cols=138 Identities=18% Similarity=0.146 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhcc-Cchh----HHHHH-h-----c-CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHh--
Q 012413 193 IKRSAAAKLRLLAKN-RSDN----RVLIG-E-----S-GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITN-- 258 (464)
Q Consensus 193 vr~~A~~~L~~La~~-~~~~----r~~i~-~-----~-g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~-- 258 (464)
+|..|+.+|..+++. +... +..+. + . .-...+..++.++++.+|..|+.+|..|-.....--..++
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 677888888888877 2211 11111 1 1 2233444567789999999999999998654311111111
Q ss_pred c---C---------------cHHHHHHHHccC-CHHHHHHHHHHHHHhcccccchhhhhccCChH----HHHHHhhcCCh
Q 012413 259 A---G---------------AIKSLVYVLKTG-TETSKQNAACALMSLALIEENKSSIGACGAIP----PLVSLLIYGSS 315 (464)
Q Consensus 259 ~---g---------------~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~----~Li~lL~~~~~ 315 (464)
. + .-..|+..|+.+ +..+..+.+.+|..|........ ...|.++ .+..++.+.|+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r--L~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR--LPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh--cCHhHHHHHHHHHHHHHhcCCC
Confidence 1 1 123455566554 67788889999998887643221 1234444 44556677899
Q ss_pred hhHHHHHHHHHHHhcCc
Q 012413 316 RGKKDALTTLYKLCSLK 332 (464)
Q Consensus 316 ~v~~~A~~aL~nL~~~~ 332 (464)
.++..++.+++.+....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999999887643
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=81.62 E-value=8.4 Score=33.82 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=64.6
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCch-hHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcC
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSD-NRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~-~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~ 248 (464)
+...++..|.+.|.+.++.++..|+..|-.+.++... ....+.+...+..|+.++.. .++.|+..++..+...+.
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4467899999999999999999999999999988653 56677788999999999988 889999999999888763
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=81.29 E-value=14 Score=33.06 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=78.0
Q ss_pred hHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh
Q 012413 303 IPPLVSLLIYG-SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE 381 (464)
Q Consensus 303 i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~ 381 (464)
++.|+++|+.+ +..+|+.++++|+.|..-+..+-+.+..+.-..- -............ . ..+.....+...-
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~~~~~~l---~-~~~~~~~~ee~y~ 84 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDESTDISL---P-MMGISPSSEEYYP 84 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc---cccccccchhhHH---h-hccCCCchHHHHH
Confidence 56677778776 6889999999999998866555443321110000 0000011111111 1 1111112334444
Q ss_pred cCcHHHHHHHHhcCCHH-HHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 382 ENGIAALVEAIEDGSVK-GKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~-v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
..++..|+..|++.+-. -...++.++-++...-...+.... ..++|.++..++..++..++.--+-|..|.
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 55788888888876532 233566666666532111111111 246899999999877788877666666553
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=80.34 E-value=14 Score=32.94 Aligned_cols=143 Identities=11% Similarity=0.063 Sum_probs=77.6
Q ss_pred ChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhh
Q 012413 220 AVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG 298 (464)
Q Consensus 220 ~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~ 298 (464)
.++.|+.+|+. .+..+|+++.++|+.|..-+..+.+....+. +.-. -...+......... ...++ ...+...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~~~~l~-~~~~~---~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDESTDISLP-MMGIS---PSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccchhhHHh-hccCC---CchHHHH
Confidence 45667788877 4689999999999999764444433221110 0000 00001111111110 01111 0122233
Q ss_pred ccCChHHHHHHhhcCCh-hhHHHHHHHHHHHhcCc-chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 012413 299 ACGAIPPLVSLLIYGSS-RGKKDALTTLYKLCSLK-QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 299 ~~g~i~~Li~lL~~~~~-~v~~~A~~aL~nL~~~~-~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa 370 (464)
-..++..|+..|++++- .-...++.++.++.... ..+-.+... .+|.++..++......++....-|+.|.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~-viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQ-VIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34467888888887632 33445667766666432 122333333 8899999998877777777777666654
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 464 | ||||
| 4db8_A | 252 | Designed Armadillo-Repeat Protein Length = 252 | 5e-07 | ||
| 4dba_A | 210 | Designed Armadillo Repeat Protein (Yiim3aii) Length | 3e-05 | ||
| 4db6_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aii) Lengt | 5e-05 | ||
| 4db9_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aiii) Leng | 5e-05 |
| >pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 | Back alignment and structure |
|
| >pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 1e-61
Identities = 60/234 (25%), Positives = 114/234 (48%), Gaps = 4/234 (1%)
Query: 183 IDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTA 242
L S + + SA K + + ++ + ++GA+PALV LL + + ++ A
Sbjct: 18 TQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 77
Query: 243 LLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGAC 300
L N++ + +AGA+ +LV +L + E Q A AL ++A E ++
Sbjct: 78 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137
Query: 301 GAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERA-VSAGAVRPLVGMLAGQGEGMA 359
GA+P LV LL + + ++AL L + S + +A + AGA+ LV +L+ E +
Sbjct: 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 197
Query: 360 EKAMVVLS-LLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412
++A+ LS + +G E ++A+ E + L + + K ++ A L +L +
Sbjct: 198 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 4e-32
Identities = 39/206 (18%), Positives = 88/206 (42%), Gaps = 3/206 (1%)
Query: 250 ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVS 308
+ + + + L + + +A + E ++ GA+P LV
Sbjct: 2 RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQ 61
Query: 309 LLIYGSSRGKKDALTTLYKLCSLK-QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLS 367
LL + + ++AL L + S + + + AGA+ LV +L+ E + ++A+ LS
Sbjct: 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 368 LLAGI-AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGG 426
+A E +A+++ + ALV+ + + + + A+ L + + + ++ G
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 181
Query: 427 IPPLVALSQTGSVRAKHKAETLLGYL 452
+P LV L + + + +A L +
Sbjct: 182 LPALVQLLSSPNEQILQEALWALSNI 207
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 5e-22
Identities = 27/165 (16%), Positives = 70/165 (42%), Gaps = 2/165 (1%)
Query: 290 IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK-QNKERAVSAGAVRPLV 348
+ + +P + L + + A ++ S + + + AGA+ LV
Sbjct: 1 MRGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALV 60
Query: 349 GMLAGQGEGMAEKA-MVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTL 407
+L+ E + ++A + ++ +G E +A+++ + ALV+ + + + + A+ L
Sbjct: 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120
Query: 408 LQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
+ + + ++ G +P LV L + + + +A L +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 183 IDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTA 242
+ L S + I + A L +A ++ + + E+GA+ L L + Q+ + A
Sbjct: 186 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245
Query: 243 LLNLSLH 249
L L H
Sbjct: 246 LEKLQSH 252
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 201 bits (512), Expect = 8e-59
Identities = 62/271 (22%), Positives = 106/271 (39%), Gaps = 7/271 (2%)
Query: 183 IDGLQSSS-VAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVT 241
+ +Q+++ V R A L L+ +R + + I +SG +PALV +L +++T
Sbjct: 65 VRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAIT 123
Query: 242 ALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGA 299
L NL LH E K + AG ++ +V +L L LA +E+K I A
Sbjct: 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183
Query: 300 CGAIPPLVSLLIYGSSRGKKD-ALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGM 358
G LV+++ + L L NK V AG ++ L L + +
Sbjct: 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 243
Query: 359 AEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNR 418
+ + L L+ + E + LV+ + + A L L + KN+
Sbjct: 244 VQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301
Query: 419 GLLVREGGIPPLVALSQTGSVRAKHKAETLL 449
++ + GGI LV R +
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAIC 332
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 9e-54
Identities = 62/274 (22%), Positives = 108/274 (39%), Gaps = 7/274 (2%)
Query: 183 IDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS-DPWTQEHSVT 241
L + AA + L+K + ++ V A+V ++ + D T +
Sbjct: 23 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAG 82
Query: 242 ALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGAC 300
L NLS H I +G I +LV +L + ++ A L +L L E K ++
Sbjct: 83 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 142
Query: 301 GAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ-NKERAVSAGAVRPLVGMLA-GQGEGM 358
G + +V+LL + + L L Q +K +++G + LV ++ E +
Sbjct: 143 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 202
Query: 359 AEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNR 418
VL +L+ + + AIVE G+ AL + D S + + + TL L
Sbjct: 203 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA---AT 259
Query: 419 GLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
EG + LV L + + A +L L
Sbjct: 260 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 1e-47
Identities = 61/268 (22%), Positives = 105/268 (39%), Gaps = 10/268 (3%)
Query: 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALL- 244
L ++V L++LA +++++I SG ALV +++ + + +L
Sbjct: 152 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211
Query: 245 NLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIP 304
LS+ +NK I AG +++L L ++ QN L +L+ + G G +
Sbjct: 212 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLG 269
Query: 305 PLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGML--AGQGEGMAEK 361
LV LL A L L +NK G + LV + AG E + E
Sbjct: 270 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 329
Query: 362 AMVVLSLLAGIAE----GREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKN 417
A+ L L + + A+ G+ +V+ + S A + L++ A N
Sbjct: 330 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 389
Query: 418 RGLLVREGGIPPLVALSQTGSVRAKHKA 445
L +G IP LV L + +
Sbjct: 390 HAPLREQGAIPRLVQLLVRAHQDTQRRT 417
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 2e-46
Identities = 63/358 (17%), Positives = 128/358 (35%), Gaps = 20/358 (5%)
Query: 96 SEDDYLNVSQAFSDFSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLG 155
+ + S + ++ + + ++ N+ G
Sbjct: 30 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA-------RCTAG 82
Query: 156 FLQRENFSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLI 215
L + E + +I + + L S ++ A L L ++ ++ +
Sbjct: 83 TLHNLSHHREGLLAIFKS---GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 139
Query: 216 GESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTLITNAGAIKSLVYVLKTGTE 274
+G + +V LL ++ + L L+ ++ +K +I +G ++LV +++T T
Sbjct: 140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 199
Query: 275 TSKQ-NAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333
+ L L++ NK +I G + L L S R ++ L TL L
Sbjct: 200 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--A 257
Query: 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLS-LLAGIAEGREAIVEENGIAALVEAI 392
++ G + LV +L + A +LS L + + + + GI ALV +
Sbjct: 258 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 317
Query: 393 EDGSVKG--KEFAVLTLLQLCA---ESVKNRGLLVREGGIPPLVALSQTGSVRAKHKA 445
+ E A+ L L + E+ + + G+P +V L S KA
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 1e-45
Identities = 61/297 (20%), Positives = 100/297 (33%), Gaps = 34/297 (11%)
Query: 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLN 245
L S + ++ LR L+ G G + LV LL D + L N
Sbjct: 236 LTDPSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292
Query: 246 LSLHEN-NKTLITNAGAIKSLVYVLKTGTETS--KQNAACALMSLALI----EENKSSIG 298
L+ + NK ++ G I++LV + + + A CAL L E ++++
Sbjct: 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 352
Query: 299 ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGML------ 351
+P +V LL S A L + +L N GA+ LV +L
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412
Query: 352 ----------------AGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDG 395
+ E + E L +LA R I N I V+ +
Sbjct: 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP 472
Query: 396 SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
+ A L +L + + + EG PL L + + A +L +
Sbjct: 473 IENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 1e-42
Identities = 51/247 (20%), Positives = 92/247 (37%), Gaps = 4/247 (1%)
Query: 210 DNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNKTLITNAGAIKSLVYV 268
+ A+P L LL D + + LS E + ++ + + ++V
Sbjct: 8 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 67
Query: 269 LKTGTETSKQ-NAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYK 327
++ + A L +L+ E +I G IP LV +L A+TTL+
Sbjct: 68 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 127
Query: 328 LCSLKQNKERAV-SAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEENGI 385
L ++ + AV AG ++ +V +L L +LA E + I+ G
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 386 AALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKA 445
ALV + + + + +L++ + N+ +V GG+ L S R
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247
Query: 446 ETLLGYL 452
L L
Sbjct: 248 LWTLRNL 254
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 2e-30
Identities = 40/215 (18%), Positives = 84/215 (39%), Gaps = 6/215 (2%)
Query: 242 ALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSI-GAC 300
A++NL ++ + + AI L +L + AA + L+ E ++ +I +
Sbjct: 1 AVVNL-INYQDDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58
Query: 301 GAIPPLVSLLIYGSSRG-KKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMA 359
+ +V + + + TL+ L ++ +G + LV ML + +
Sbjct: 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118
Query: 360 EKAMVVLSLLAGIAEG-REAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNR 418
A+ L L EG + A+ G+ +V + +VK L L + +++
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178
Query: 419 GLLVREGGIPPLVALSQTGSVRAKHK-AETLLGYL 452
+++ GG LV + +T + +L L
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 8e-16
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 1/101 (0%)
Query: 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLS 247
I L +LA++ NR++I +P V LL Q + L L+
Sbjct: 430 VRMEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488
Query: 248 LHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLA 288
+ I GA L +L + E AA L ++
Sbjct: 489 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 4e-58
Identities = 63/303 (20%), Positives = 121/303 (39%), Gaps = 27/303 (8%)
Query: 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC----- 230
+P + + + + A L L+ + ++R + E G + A+ LL+
Sbjct: 31 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMY 89
Query: 231 ------SDPWTQEHSVTALLNLSLH--ENNKTLITNAGAIKSLVYVLKTGTETSKQNAAC 282
+ ++ AL NL+ N TL + G +++LV LK+ +E +Q A
Sbjct: 90 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS 149
Query: 283 ALMSLALI--EENKSSIGACGAIPPLVSLLIYGSSRG-KKDALTTLYKLCSL-KQNKERA 338
L +L+ +K ++ G++ L+ + K L+ L+ L + +NK
Sbjct: 150 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 209
Query: 339 VSA-GAVRPLVGMLAGQGEGMAEKAMV--------VLSLLAGIAEGREAIVEENGIAALV 389
+ GA+ LVG L + + + V SL+A + R+ + E N + L+
Sbjct: 210 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 269
Query: 390 EAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLL 449
+ ++ S+ A TL L A + K++ L G + L L + + L
Sbjct: 270 QHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329
Query: 450 GYL 452
L
Sbjct: 330 RNL 332
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 5e-34
Identities = 56/272 (20%), Positives = 99/272 (36%), Gaps = 17/272 (6%)
Query: 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLI-GESGAVPALVPLLKCSDP 233
LQ ++ S+ ++R A L L N+ + G + ALV LK
Sbjct: 82 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 141
Query: 234 WTQEHSVTALLNLSLHEN--NKTLITNAGAIKSLVYVLKTGTETSKQ-NAACALMSLA-L 289
Q+ + L NLS + +K + G++K+L+ + S + AL +L+
Sbjct: 142 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201
Query: 290 IEENKSSI-GACGAIPPLVSLLIYGSSRG----KKDALTTLYKLCSL----KQNKERAVS 340
ENK+ I GA+ LV L Y S + L + SL + +++
Sbjct: 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 261
Query: 341 AGAVRPLVGMLAGQGEGMAEKAMVVLS-LLAGIAEGREAIVEENGIAALVEAIEDGSVKG 399
++ L+ L + A L L A + +EA+ + ++ L I
Sbjct: 262 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 321
Query: 400 KEFAVLTLLQLCA--ESVKNRGLLVREGGIPP 429
+ L L A + ++ G P
Sbjct: 322 AMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 2e-31
Identities = 50/281 (17%), Positives = 100/281 (35%), Gaps = 29/281 (10%)
Query: 201 LRLLAKNR----SDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256
L LL + R + + + +V L+ LS E ++ +
Sbjct: 10 LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAM 69
Query: 257 TNAGAIKSLVYVLKTGTETS-----------KQNAACALMSLALI-EENKSSIGAC-GAI 303
G ++++ +L+ E ++ A AL +L NK+++ + G +
Sbjct: 70 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 129
Query: 304 PPLVSLLIYGSSRGKKDALTTLYKLCSLK--QNKERAVSAGAVRPLVGML-AGQGEGMAE 360
LV+ L S ++ + L L +K+ G+V+ L+ + E +
Sbjct: 130 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 189
Query: 361 KAMVVLS-LLAGIAEGREAIVEENG-IAALVEAI----EDGSVKGKEFAVLTL---LQLC 411
+ L L A E + I +G +A LV + + ++ E L L
Sbjct: 190 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249
Query: 412 AESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
A + +R +L + L+ ++ S+ A L L
Sbjct: 250 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 5e-57
Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 7/275 (2%)
Query: 179 VKICIDGLQSSS-VAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237
V + +Q+++ V R A L L+ +R + + I +SG +PALV +L
Sbjct: 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 116
Query: 238 HSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKS 295
+++T L NL LH E K + AG ++ +V +L L LA +E+K
Sbjct: 117 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176
Query: 296 SIGACGAIPPLVSLLIYGSSRGKK-DALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQ 354
I A G LV+++ + L L NK V AG ++ L L
Sbjct: 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 236
Query: 355 GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414
+ + + + L L+ + E + LV+ + + A L L +
Sbjct: 237 SQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294
Query: 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLL 449
KN+ ++ + GGI LV R +
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 1e-53
Identities = 62/274 (22%), Positives = 109/274 (39%), Gaps = 7/274 (2%)
Query: 183 IDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVT 241
L + AA + L+K + ++ V A+V ++ +D T +
Sbjct: 20 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAG 79
Query: 242 ALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN-KSSIGAC 300
L NLS H I +G I +LV +L + ++ A L +L L +E K ++
Sbjct: 80 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 139
Query: 301 GAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ-NKERAVSAGAVRPLVGMLA-GQGEGM 358
G + +V+LL + + L L Q +K +++G + LV ++ E +
Sbjct: 140 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 199
Query: 359 AEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNR 418
VL +L+ + + AIVE G+ AL + D S + + + TL L
Sbjct: 200 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA---AT 256
Query: 419 GLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
EG + LV L + + A +L L
Sbjct: 257 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 1e-44
Identities = 61/297 (20%), Positives = 99/297 (33%), Gaps = 34/297 (11%)
Query: 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLN 245
L S + ++ LR L+ G G + LV LL D + L N
Sbjct: 233 LTDPSQRLVQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289
Query: 246 LSLH-ENNKTLITNAGAIKSLVYVLKTGTETS--KQNAACALMSLALI----EENKSSIG 298
L+ + NK ++ G I++LV + + + A CAL L E ++++
Sbjct: 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 349
Query: 299 ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLA----- 352
+P +V LL S A L + +L N GA+ LV +L
Sbjct: 350 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 409
Query: 353 -----------------GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDG 395
+ E + E L +LA R I N I V+ +
Sbjct: 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP 469
Query: 396 SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
+ A L +L + + EG PL L + + A +L +
Sbjct: 470 IENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 525
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 160 bits (405), Expect = 4e-43
Identities = 59/315 (18%), Positives = 106/315 (33%), Gaps = 32/315 (10%)
Query: 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL--KCSDPWTQ 236
+ + L S + + AA L L N N++++ + G + ALV +
Sbjct: 265 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324
Query: 237 EHSVTALLNLSLH----ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMS-LALIE 291
E ++ AL +L+ E + + + +V +L + A L+ LAL
Sbjct: 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384
Query: 292 ENKSSIGACGAIPPLVSLLIYGSSRGKKD----------------------ALTTLYKLC 329
N + + GAIP LV LL+ ++ L+ L
Sbjct: 385 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 444
Query: 330 SLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALV 389
N+ + V +L E + A VL LA E EAI E A L
Sbjct: 445 RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT 504
Query: 390 EAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLL 449
E + + +A L ++ + ++ + + +L +T + A+ L
Sbjct: 505 ELLHSRNEGVATYAAAVLFRMSEDKPQDY---KKRLSVELTSSLFRTEPMAWNETADLGL 561
Query: 450 GYLREPRQEGPSSSP 464
+ G
Sbjct: 562 DIGAQGEPLGYRQDD 576
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 6e-41
Identities = 51/247 (20%), Positives = 92/247 (37%), Gaps = 4/247 (1%)
Query: 210 DNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNKTLITNAGAIKSLVYV 268
+ A+P L LL D + + LS E + ++ + + ++V
Sbjct: 5 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64
Query: 269 LKTGTETSKQ-NAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYK 327
++ + A L +L+ E +I G IP LV +L A+TTL+
Sbjct: 65 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124
Query: 328 LCSLKQNKERAV-SAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEENGI 385
L ++ + AV AG ++ +V +L L +LA E + I+ G
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184
Query: 386 AALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKA 445
ALV + + + + +L++ + N+ +V GG+ L S R
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 244
Query: 446 ETLLGYL 452
L L
Sbjct: 245 LWTLRNL 251
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 1e-23
Identities = 38/166 (22%), Positives = 60/166 (36%), Gaps = 2/166 (1%)
Query: 289 LIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAV-SAGAVRPL 347
LI + A AIP L LL A +++L + ++ + S V +
Sbjct: 2 LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 61
Query: 348 VGMLA-GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLT 406
V + A L L+ EG AI + GI ALV+ + +A+ T
Sbjct: 62 VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 121
Query: 407 LLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
L L + + GG+ +VAL +V+ L L
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 189 bits (480), Expect = 5e-55
Identities = 64/306 (20%), Positives = 122/306 (39%), Gaps = 27/306 (8%)
Query: 173 EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-- 230
E +P + + + + A L L+ + ++R + E G + A+ LL+
Sbjct: 144 EAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDC 202
Query: 231 ---------SDPWTQEHSVTALLNLSLH--ENNKTLITNAGAIKSLVYVLKTGTETSKQN 279
+ ++ AL NL+ N TL + G +++LV LK+ +E +Q
Sbjct: 203 EMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 262
Query: 280 AACALMSLALI--EENKSSIGACGAIPPLVSLLIYGSSRG-KKDALTTLYKLCSL-KQNK 335
A L +L+ +K ++ G++ L+ + K L+ L+ L + +NK
Sbjct: 263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322
Query: 336 ERAVSA-GAVRPLVGMLAGQGEGMAEKAMV--------VLSLLAGIAEGREAIVEENGIA 386
+ GA+ LVG L + + + V SL+A + R+ + E N +
Sbjct: 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ 382
Query: 387 ALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAE 446
L++ ++ S+ A TL L A + K++ L G + L L + +
Sbjct: 383 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 442
Query: 447 TLLGYL 452
L L
Sbjct: 443 AALRNL 448
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-34
Identities = 54/253 (21%), Positives = 94/253 (37%), Gaps = 15/253 (5%)
Query: 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLI-GESGAVPALVPLLKCSDP 233
LQ ++ S+ ++R A L L N+ + G + ALV LK
Sbjct: 198 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 257
Query: 234 WTQEHSVTALLNLSLHEN--NKTLITNAGAIKSLVYVLKTGTETSKQ-NAACALMSLA-L 289
Q+ + L NLS + +K + G++K+L+ + S + AL +L+
Sbjct: 258 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317
Query: 290 IEENKSSI-GACGAIPPLVSLLIYGSSRG----KKDALTTLYKLCSL----KQNKERAVS 340
ENK+ I GA+ LV L Y S + L + SL + +++
Sbjct: 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 377
Query: 341 AGAVRPLVGMLAGQGEGMAEKAMVVLS-LLAGIAEGREAIVEENGIAALVEAIEDGSVKG 399
++ L+ L + A L L A + +EA+ + ++ L I
Sbjct: 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 437
Query: 400 KEFAVLTLLQLCA 412
+ L L A
Sbjct: 438 AMGSAAALRNLMA 450
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-29
Identities = 50/289 (17%), Positives = 100/289 (34%), Gaps = 29/289 (10%)
Query: 193 IKRSAAAKLRLLAKNRSD----NRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL 248
R L LL + R+ + + +V L+ LS
Sbjct: 118 RGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF 177
Query: 249 HENNKTLITNAGAIKSLVYVLKTGTETS-----------KQNAACALMSLALI-EENKSS 296
E ++ + G ++++ +L+ E ++ A AL +L NK++
Sbjct: 178 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 237
Query: 297 IGA-CGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL--KQNKERAVSAGAVRPLVGMLA- 352
+ + G + LV+ L S ++ + L L +K+ G+V+ L+
Sbjct: 238 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE 297
Query: 353 GQGEGMAEKAMVVL-SLLAGIAEGREAIVEENG-IAALVEAIEDGSVKGKEFAVL----- 405
+ E + + L +L A E + I +G +A LV + S +
Sbjct: 298 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI 357
Query: 406 --TLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
+ L A + +R +L + L+ ++ S+ A L L
Sbjct: 358 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 55/340 (16%), Positives = 107/340 (31%), Gaps = 59/340 (17%)
Query: 171 SPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC 230
L V++ L K + L ++ + D+ + + +SG +P L+ LL
Sbjct: 23 LTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSS-QDSCISMRQSGCLPLLIQLLHG 81
Query: 231 SDP------------WTQEHSVTALLNLSLHENNKT------------------------ 254
+D + + AL N+ + +
Sbjct: 82 NDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWE 141
Query: 255 -LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG 313
+ + + E A C LM L+ EE++ ++ G + + LL
Sbjct: 142 WQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVD 201
Query: 314 SSRGKKD-----------ALTTLYKLCSLKQNKERAV--SAGAVRPLVGMLAGQGEGMAE 360
A L L + + G +R LV L + E + +
Sbjct: 202 CEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 261
Query: 361 KAMVVLSLLAGIA--EGREAIVEENGIAALVEAIEDGSVKG-KEFAVLTLLQLCAESVKN 417
VL L+ A ++ + E + AL+E + + + + L L A +N
Sbjct: 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321
Query: 418 RGLLVRE-GGIPPLVAL----SQTGSVRAKHKAETLLGYL 452
+ + G + LV SQT ++ +L +
Sbjct: 322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 361
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 5e-23
Identities = 31/162 (19%), Positives = 67/162 (41%), Gaps = 10/162 (6%)
Query: 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRV-LIGESGAVPALVPLLKCSDPWT----QEHSV 240
L+ + +S + L L+ + ++N+ + GA+ LV L E
Sbjct: 296 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 355
Query: 241 TALLNLSLH----ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSL-ALIEENKS 295
L N+S E+++ ++ +++L+ LK+ + T NA L +L A +++
Sbjct: 356 GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE 415
Query: 296 SIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKER 337
++ GA+ L +L+ + L L + + K +
Sbjct: 416 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 3e-16
Identities = 50/267 (18%), Positives = 91/267 (34%), Gaps = 52/267 (19%)
Query: 235 TQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENK 294
HS + S L T + SL+ +L T K + + L++++ +++
Sbjct: 7 HHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGT---HDKDDMSRTLLAMSSSQDSC 63
Query: 295 SSIGACGAIPPLVSLL------------IYGSSRGKKDALTTLYKLCSLKQNKERAVSAG 342
S+ G +P L+ LL GS + A L+ + + + +R
Sbjct: 64 ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREI 123
Query: 343 AVRPL-------------------------VGMLAGQGEGMAEKAMVVLSLLAGIAEGRE 377
V L + E A+ VL L+ E R
Sbjct: 124 RVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH 183
Query: 378 AIVEENGIAALVE-----------AIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR-EG 425
A+ E G+ A+ E + S+ + +A + L L V N+ L +G
Sbjct: 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243
Query: 426 GIPPLVALSQTGSVRAKHKAETLLGYL 452
+ LVA ++ S + ++L L
Sbjct: 244 CMRALVAQLKSESEDLQQVIASVLRNL 270
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 3e-09
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEH 238
++ + L+S S+ I +A L L+ ++ + + GAV L L+
Sbjct: 381 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 440
Query: 239 SVTALLNLSLHENNK 253
S AL NL + K
Sbjct: 441 SAAALRNLMANRPAK 455
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 9e-55
Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 7/275 (2%)
Query: 179 VKICIDGLQSSS-VAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237
V + +Q+++ V R + L L+ +R + + I +SG +PALV +L
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLF 252
Query: 238 HSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKS 295
H++T L NL LH E K + AG ++ +V +L L LA +E+K
Sbjct: 253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 312
Query: 296 SIGACGAIPPLVSLLIYGSSRGKK-DALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQ 354
I A G LV+++ + L L NK V AG ++ L L
Sbjct: 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 372
Query: 355 GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414
+ + + + L L+ + E + LV+ + + A L L +
Sbjct: 373 SQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430
Query: 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLL 449
KN+ ++ + GGI LV R +
Sbjct: 431 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 1e-49
Identities = 69/344 (20%), Positives = 130/344 (37%), Gaps = 21/344 (6%)
Query: 122 QRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQP---- 177
QR+ + PE + + Q + +QR +++++ +
Sbjct: 91 QRVRAAMFPETLDEGMQIPSTQFDSAHPTN-----VQRLAEPSQMLKHAVVNLINYQDDA 145
Query: 178 -----TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CS 231
+ L + AA + L+K + ++ V A+V ++ +
Sbjct: 146 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 205
Query: 232 DPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE 291
D T + L NLS H I +G I +LV +L + ++ +A L +L L +
Sbjct: 206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265
Query: 292 EN-KSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ-NKERAVSAGAVRPLVG 349
E K ++ G + +V+LL + + L L Q +K +++G + LV
Sbjct: 266 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 325
Query: 350 MLA-GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLL 408
++ E + VL +L+ + + AIVE G+ AL + D S + + + TL
Sbjct: 326 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 385
Query: 409 QLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
L EG + LV L + + A +L L
Sbjct: 386 NLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 7e-38
Identities = 59/316 (18%), Positives = 106/316 (33%), Gaps = 34/316 (10%)
Query: 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL--KCSDPWTQ 236
+ + L S + + AA L L N N++++ + G + ALV +
Sbjct: 401 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 460
Query: 237 EHSVTALLNLSLH----ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMS-LALIE 291
E ++ AL +L+ E + + + +V +L + A L+ LAL
Sbjct: 461 EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520
Query: 292 ENKSSIGACGAIPPLVSLLIYGSSRGKKDA----------------------LTTLYKLC 329
N + + GAIP LV LL+ ++ L+ L
Sbjct: 521 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILA 580
Query: 330 SLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALV 389
N+ + V +L E + A VL LA E EAI E A L
Sbjct: 581 RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT 640
Query: 390 EAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLV-ALSQTGSVRAKHKAETL 448
E + + +A L ++ + ++ ++ L +L +T + +
Sbjct: 641 ELLHSRNEGVATYAAAVLFRMSEDKPQDY----KKRLSVELTSSLFRTEPMTWNETGDLG 696
Query: 449 LGYLREPRQEGPSSSP 464
L + G
Sbjct: 697 LDIGAQGEPLGYRQDD 712
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 3e-23
Identities = 43/220 (19%), Positives = 70/220 (31%), Gaps = 8/220 (3%)
Query: 235 TQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENK 294
Q A + V L + Q A+++L +++
Sbjct: 90 AQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPS----QMLKHAVVNLINYQDDA 145
Query: 295 SSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAV-SAGAVRPLVGMLA- 352
A AIP L LL A +++L + ++ + S V +V +
Sbjct: 146 --ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 203
Query: 353 GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412
A L L+ EG AI + GI ALV + A+ TL L
Sbjct: 204 TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263
Query: 413 ESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
+ + GG+ +VAL +V+ L L
Sbjct: 264 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 2e-49
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 3/188 (1%)
Query: 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLN 245
L S +SA KL +A ++ + ++GA+PALV LL + + ++ AL N
Sbjct: 21 LNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 80
Query: 246 LSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAI 303
++ + +AGA+ +LV +L + E Q A AL ++A E ++ GA+
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140
Query: 304 PPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAV-SAGAVRPLVGMLAGQGEGMAEKA 362
P LV LL + + ++AL L + S +++AV AGA+ L + + + E + ++A
Sbjct: 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200
Query: 363 MVVLSLLA 370
L L
Sbjct: 201 QEALEKLQ 208
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-35
Identities = 45/206 (21%), Positives = 93/206 (45%), Gaps = 3/206 (1%)
Query: 250 ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVS 308
+ + + +V L + + Q+A L +A E ++ GA+P LV
Sbjct: 2 RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ 61
Query: 309 LLIYGSSRGKKDALTTLYKLCSLKQNKERAV-SAGAVRPLVGMLAGQGEGMAEKAMVVLS 367
LL + + ++AL L + S + +AV AGA+ LV +L+ E + ++A+ LS
Sbjct: 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 368 LLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGG 426
+A G E +A+++ + ALV+ + + + + A+ L + + + + + G
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA 181
Query: 427 IPPLVALSQTGSVRAKHKAETLLGYL 452
+ L L + + + +A+ L L
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 1e-23
Identities = 30/165 (18%), Positives = 73/165 (44%), Gaps = 2/165 (1%)
Query: 290 IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLV 348
+ + +P +V L + + AL L ++ S + + + AGA+ LV
Sbjct: 1 MRGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV 60
Query: 349 GMLAGQGEGMAEKA-MVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTL 407
+L+ E + ++A + ++ +G E +A+++ + ALV+ + + + + A+ L
Sbjct: 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120
Query: 408 LQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
+ + + ++ G +P LV L + + + +A L +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 6e-08
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 183 IDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTA 242
+ L S + I + A L +A ++ + + E+GA+ L L + Q+ + A
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 203
Query: 243 LLNLSLH 249
L L H
Sbjct: 204 LEKLQSH 210
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 3e-45
Identities = 51/280 (18%), Positives = 105/280 (37%), Gaps = 6/280 (2%)
Query: 179 VKICIDGLQSSS-VAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237
V ++ L+ ++ +A L +A S ++ ++GAVP + LL QE
Sbjct: 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 125
Query: 238 HSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETS-KQNAACALMSLALIEENKS 295
+V AL N++ + + + + L+ + + +NA AL +L +
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185
Query: 296 SIGA-CGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAG 353
+ L LL + DA L L + + AG R LV +L
Sbjct: 186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245
Query: 354 QGEGMAEKAMVVLS-LLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412
+ A+ + ++ G + I+ + + +L+ + K+ A T+ + A
Sbjct: 246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305
Query: 413 ESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
+ ++ P L+++ QT R + +A +
Sbjct: 306 GNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNA 345
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 9e-34
Identities = 57/278 (20%), Positives = 108/278 (38%), Gaps = 8/278 (2%)
Query: 183 IDGLQSSSVAIKRSAAAKLRLLAKNRSDNRV--LIGESGAVPALVPLLKCSD-PWTQEHS 239
I+ + S S + SA K R L + + +I G V V LK + Q S
Sbjct: 26 IEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFES 85
Query: 240 VTALLNLSLHENNKT-LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSI 297
L N++ + +T ++ AGA+ + +L + E ++ A AL ++A + +
Sbjct: 86 AWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYV 145
Query: 298 GACGAIPPLVSLLIYGSSRG-KKDALTTLYKLCSLKQNK-ERAVSAGAVRPLVGMLAGQG 355
C +PPL+ L + ++A+ L LC K E A + + L +L
Sbjct: 146 LDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSD 205
Query: 356 EGMAEKAMVVLS-LLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414
+ A LS L G + +A+++ LVE + K A+ + +
Sbjct: 206 TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD 265
Query: 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
+++ + L+ L + K +A + +
Sbjct: 266 DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 9e-29
Identities = 40/254 (15%), Positives = 79/254 (31%), Gaps = 8/254 (3%)
Query: 207 NRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN---KTLITNAGAIK 263
+ +N + ++ ++ P Q + L E N +I+ G +
Sbjct: 8 AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67
Query: 264 SLVYVLKTGTETSKQ-NAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDA 321
V LK + Q +A L ++A + GA+P + LL ++ A
Sbjct: 68 RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127
Query: 322 LTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEG-MAEKAMVVLSLLAGIAEGREAI 379
+ L + ++ + + PL+ + + Q M A+ LS L
Sbjct: 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187
Query: 380 VEENG-IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGS 438
+ + + L + A L L ++ G LV L
Sbjct: 188 AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND 247
Query: 439 VRAKHKAETLLGYL 452
+ A +G +
Sbjct: 248 YKVVSPALRAVGNI 261
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 7e-27
Identities = 47/238 (19%), Positives = 93/238 (39%), Gaps = 5/238 (2%)
Query: 161 NFSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGA 220
N + P + + L S + A L L+ +D + ++G
Sbjct: 176 NLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGV 235
Query: 221 VPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQN 279
LV LL +D ++ A+ N+ + +I N A++SL+++L + E+ K+
Sbjct: 236 CRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKE 295
Query: 280 AACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK--QNKE 336
A + ++ ++ P L+S+L R +K+A + S + +
Sbjct: 296 ACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIK 355
Query: 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED 394
V G ++PL +L + + A+ L + + E +EA GI IE+
Sbjct: 356 YLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE-QEAKRNGTGINPYCALIEE 412
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 98.4 bits (245), Expect = 2e-22
Identities = 40/218 (18%), Positives = 75/218 (34%), Gaps = 7/218 (3%)
Query: 242 ALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN---KSSIG 298
A+ NN + ++ ++ + + + +A L E N I
Sbjct: 2 AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61
Query: 299 ACGAIPPLVSLLIYGSSRG-KKDALTTLYKLCSLKQNKERAV-SAGAVRPLVGMLAGQGE 356
G + V L + + ++ L + S + R V AGAV + +L+ + E
Sbjct: 62 TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121
Query: 357 GMAEKAMVVLSLLAGI-AEGREAIVEENGIAALVEAI-EDGSVKGKEFAVLTLLQLCAES 414
+ E+A+ L +AG R+ +++ N + L++ + + AV L LC
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181
Query: 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
+ L L A L YL
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYL 219
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 1e-38
Identities = 50/284 (17%), Positives = 102/284 (35%), Gaps = 10/284 (3%)
Query: 179 VKICIDGLQSSSVA-IKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237
+ + L + + I+ +A L +A S+ + + GA+PA + LL E
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
Query: 238 HSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLAL------I 290
+V AL N++ + L+ GAI L+ +L ++ ++ L
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221
Query: 291 EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAV-SAGAVRPLVG 349
+P LV LL + D+ + L + V G V LV
Sbjct: 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281
Query: 350 MLAGQGEGMAEKAMVVLS-LLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLL 408
+L + A+ + ++ G E + +++ +A + + ++ A T+
Sbjct: 282 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341
Query: 409 QLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
+ A +V G +P LV + + + +A +
Sbjct: 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 5e-30
Identities = 53/304 (17%), Positives = 113/304 (37%), Gaps = 11/304 (3%)
Query: 160 ENFSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLR-LLAKNRSDNRVLIGES 218
++ + + +V+ + G+ S+++ + A R LL++ + I +
Sbjct: 40 DDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRA 99
Query: 219 GAVPALVPLLKCSD-PWTQEHSVTALLNLSLHENNKT-LITNAGAIKSLVYVLKTGTETS 276
G +P V L +D Q S AL N++ + +T + + GAI + + +L +
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159
Query: 277 KQNAACALMSLAL-IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTT-----LYKLCS 330
+ A AL ++A + + GAI PL++LL L LC
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219
Query: 331 LKQN-KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAAL 388
K + LV +L + + +S L G E E +V++ + L
Sbjct: 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279
Query: 389 VEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETL 448
V+ + + A+ + + + + ++ G + +L + +A
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339
Query: 449 LGYL 452
+ +
Sbjct: 340 MSNI 343
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 4e-28
Identities = 52/274 (18%), Positives = 105/274 (38%), Gaps = 11/274 (4%)
Query: 187 QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNL 246
+ + R+ L L +N++ L +P LV LL +DP S A+ L
Sbjct: 200 STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 259
Query: 247 SLHENNKT-LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIP 304
+ N + ++ G + LV +L A A+ ++ +E + GA+
Sbjct: 260 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 319
Query: 305 PLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAM 363
SLL + +K+A T+ + + + ++ V+ G V LVG+L+ ++A
Sbjct: 320 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379
Query: 364 VVLSLLA--GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC------AESV 415
++ G E +V I L+ + K + + + + E+
Sbjct: 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETE 439
Query: 416 KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLL 449
K ++ GG+ + AL + + + L+
Sbjct: 440 KLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-25
Identities = 41/306 (13%), Positives = 103/306 (33%), Gaps = 16/306 (5%)
Query: 96 SEDDYLNVSQAFSDFSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLG 155
A + + S + + ++ +L P+ +
Sbjct: 156 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL-----RNL 210
Query: 156 FLQRENFSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLI 215
N + + ++ + + L + + + + L ++ ++
Sbjct: 211 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV 270
Query: 216 GESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTE 274
+ G VP LV LL ++ ++ A+ N+ + + +AGA+ +L
Sbjct: 271 VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT 330
Query: 275 TSKQNAACALMSL-ALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-- 331
++ A + ++ A ++ + G +P LV +L + +K+A + S
Sbjct: 331 NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT 390
Query: 332 KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEG-------REAIVEENG 384
+ V G + PL+ +L+ + + + + +S + AE I E G
Sbjct: 391 VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG 450
Query: 385 IAALVE 390
+ +
Sbjct: 451 LDKIEA 456
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 83.9 bits (207), Expect = 2e-17
Identities = 42/222 (18%), Positives = 80/222 (36%), Gaps = 10/222 (4%)
Query: 241 TALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKS--SIG 298
T + ++ + T +++ +V + + S+ A A L E+ +I
Sbjct: 38 TDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNII 97
Query: 299 ACGAIPPLVSLLIYGSSRG-KKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGE 356
G IP VS L + ++ L + S + + V GA+ + +LA
Sbjct: 98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA 157
Query: 357 GMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLT-----LLQL 410
++E+A+ L +AG + R+ +++ I L+ + + L L L
Sbjct: 158 HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217
Query: 411 CAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
C L E +P LV L + + YL
Sbjct: 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 259
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 2e-14
Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 4/173 (2%)
Query: 277 KQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK- 335
+ A+ + + ++ +V + + + A KL S ++
Sbjct: 33 SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92
Query: 336 -ERAVSAGAVRPLVGMLA--GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAI 392
+ + AG + V L E A + ++ +G +E +A+V+ I A + +
Sbjct: 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152
Query: 393 EDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKA 445
E AV L + + R L+++ G I PL+AL +
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 8/123 (6%)
Query: 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRS-DNRVLIGESGAVPALVPLLKCSDPWTQE 237
V + L + ++ AA + + + V + G + L+ LL D +
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 238 HSVTALLNLSLH-------ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI 290
+ A+ N+ E +I G + + + + E+ + + + +
Sbjct: 420 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479
Query: 291 EEN 293
EE
Sbjct: 480 EEE 482
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-35
Identities = 61/301 (20%), Positives = 124/301 (41%), Gaps = 6/301 (1%)
Query: 158 QRENFSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLR-LLAKNRSDNRVLIG 216
E+ S+ + LQ + L S + + SA K R +L++ ++
Sbjct: 68 DEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI 127
Query: 217 ESGAVPALVPLLKCSDPWT-QEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTE 274
++G VP LV ++ + P Q + AL N++ ++ +A A+ + +L TG+
Sbjct: 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV 187
Query: 275 TSKQNAACALMSLAL-IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333
K+ A AL ++A + + + C A+ P++ L + A TL LC K+
Sbjct: 188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247
Query: 334 N-KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEA 391
+ +V + A+ L ++ A +S L+ G E +A+++ LVE
Sbjct: 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL 307
Query: 392 IEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGY 451
+ S + A+ + + + +++ G +P L L + K +A +
Sbjct: 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367
Query: 452 L 452
+
Sbjct: 368 I 368
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 4e-35
Identities = 69/363 (19%), Positives = 136/363 (37%), Gaps = 25/363 (6%)
Query: 112 VCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEI----- 166
+ S D+ +L IL + + ++ P L REN +
Sbjct: 96 LNSDDMQEQLSATVKFR---QILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAA 152
Query: 167 -----IESISPEDLQP-----TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG 216
I S + + V + I L + SV +K A L +A + +D R +
Sbjct: 153 WALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVL 212
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTET 275
+ A+ ++ L + P + L NL + + A+ +L ++ +
Sbjct: 213 QCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE 272
Query: 276 SKQNAACALMSLALIEENKSSIGA-CGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK-Q 333
+ +A A+ L+ + LV LL + S+ + AL + + +
Sbjct: 273 TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL 332
Query: 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLS-LLAGIAEGREAIVEENGIAALVEAI 392
+ ++AG + L +L+ E + ++A +S + AG E +A+++ N I LV+ +
Sbjct: 333 QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL 392
Query: 393 EDGSVKGKEFAVLTLLQLCAESVKNRGL---LVREGGIPPLVALSQTGSVRAKHKAETLL 449
E K K+ A + + ++ + LV +G I PL L + R L
Sbjct: 393 EVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL 452
Query: 450 GYL 452
+
Sbjct: 453 ENI 455
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 4e-27
Identities = 45/263 (17%), Positives = 86/263 (32%), Gaps = 6/263 (2%)
Query: 196 SAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255
A + + +D + +P + L D Q + + E+ +
Sbjct: 64 GADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPI 123
Query: 256 --ITNAGAIKSLVYVLKTGTETSKQ-NAACALMSLALI-EENKSSIGACGAIPPLVSLLI 311
+ AG + LV ++ Q AA AL ++A + A+P + LL
Sbjct: 124 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 183
Query: 312 YGSSRGKKDALTTLYKLC-SLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA 370
GS K+ A+ L + ++ + A+ P++G+ + A LS L
Sbjct: 184 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243
Query: 371 -GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPP 429
G + V + L + I + A + L + ++
Sbjct: 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 303
Query: 430 LVALSQTGSVRAKHKAETLLGYL 452
LV L S + A +G +
Sbjct: 304 LVELLSHESTLVQTPALRAVGNI 326
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 9e-26
Identities = 50/289 (17%), Positives = 104/289 (35%), Gaps = 18/289 (6%)
Query: 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEH 238
++ + S+ ++ R+A L L + + S A+P L L+ D T
Sbjct: 217 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD 276
Query: 239 SVTALLNLSLHENNKT-LITNAGAIKSLVYVLKTGTETSKQNAACALMSLAL-IEENKSS 296
+ A+ LS + + K LV +L + + A A+ ++ +
Sbjct: 277 ACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQV 336
Query: 297 IGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAV-SAGAVRPLVGMLAGQG 355
+ G +P L LL KK+A T+ + + + +AV A + PLV +L
Sbjct: 337 VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE 396
Query: 356 EGMAEKAMVVLSLLAGIA----EGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411
++A +S + + +V + I L + +E + E + L +
Sbjct: 397 YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 456
Query: 412 AESVKNRG-----------LLVREGGIPPLVALSQTGSVRAKHKAETLL 449
++ + + GG+ + Q + + KA ++
Sbjct: 457 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 9e-35
Identities = 65/374 (17%), Positives = 115/374 (30%), Gaps = 67/374 (17%)
Query: 145 ELEPEPEPCLGFLQRENFSTEIIESIS------PEDLQPTVKICIDGLQSSSVAIKRSAA 198
E+ + Q E S ++S+ P QP + I L A+K +AA
Sbjct: 10 EVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAA 69
Query: 199 AKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHEN--NKTLI 256
A L+ L + + + +P LV LL + AL N+S + NK I
Sbjct: 70 AYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129
Query: 257 TNAGAIKSLVYVLKTGTETSKQ-NAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSS 315
N + +LV +L+ + L +L+ + K I A+ L +I S
Sbjct: 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI-VDHALHALTDEVIIPHS 188
Query: 316 RGKKDALT------------------TLYKLCSLKQNKERAVSA--GAVRPLVGML---- 351
+++ L + S + R + G V L+ ++
Sbjct: 189 GWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI 248
Query: 352 --AGQGEGMAEKAMVVLSLL--------------------------AGIAEGREAIVEEN 383
+ E + +L L A G E + +
Sbjct: 249 GQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPE 308
Query: 384 GIAALVEAIEDGSVKG-KEFAVLTLLQLCA----ESVKNRGLLVREGGIPPLVALSQTGS 438
+ + +++ E + + LCA R L +E + + L
Sbjct: 309 VVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH 368
Query: 439 VRAKHKAETLLGYL 452
R A L L
Sbjct: 369 ERVVKAASGALRNL 382
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 86.9 bits (214), Expect = 2e-18
Identities = 45/231 (19%), Positives = 82/231 (35%), Gaps = 19/231 (8%)
Query: 127 LPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGL 186
+ N+ Q + QAE E P + + + PE ++ + +
Sbjct: 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLL---K 318
Query: 187 QSSSVAIKRSAAAKLRLLAKNR----SDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTA 242
+S + AI ++A ++ L R R + + A+ A+ LL + + A
Sbjct: 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGA 378
Query: 243 LLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQ--------NAACALMSLALI-EEN 293
L NL++ NK LI AI +LV L G + S + + + E
Sbjct: 379 LRNLAVDARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437
Query: 294 KSSIGACGAIPPLVSLLIYG--SSRGKKDALTTLYKLCSLKQNKERAVSAG 342
+ I LV + G S + + A L + K+ ++ G
Sbjct: 438 AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEG 488
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 79.6 bits (195), Expect = 4e-16
Identities = 61/329 (18%), Positives = 106/329 (32%), Gaps = 52/329 (15%)
Query: 186 LQSSSVAIKRSAAAKLRLLAKNRSDNR-VLIGESGAVPALVPLLKCS------DPWTQEH 238
++ + A LR ++ RS+ R L G V AL+ +++ D E+
Sbjct: 201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVEN 260
Query: 239 SVTALLNLSL--------------------------HENNKTLITNAGAIKSLVYVLKTG 272
V L NLS L+ ++ + +LK
Sbjct: 261 CVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES 320
Query: 273 T-ETSKQNAACALMSLA-----LIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLY 326
+ +A A+ +L +S++ A+ + LL R K A L
Sbjct: 321 KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALR 380
Query: 327 KLCSLKQNKERAVSAGAVRPLVGMLAG---------QGEGMAEKAMVVLSLLAGIAEGRE 377
L +NKE + A+ LV L G + + + ++A E +
Sbjct: 381 NLAVDARNKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAK 439
Query: 378 AIVEENGIAALVEAIEDG--SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQ 435
+ E GI LV + G S K A L L + + R L +EG ++
Sbjct: 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK-ELRKPLEKEGWKKSDFQVNL 498
Query: 436 TGSVRAKHKAETLLGYLREPRQEGPSSSP 464
+ R++ L + S
Sbjct: 499 NNASRSQSSHSYDDSTLPLIDRNQKSDKK 527
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 131 bits (329), Expect = 9e-34
Identities = 45/303 (14%), Positives = 84/303 (27%), Gaps = 35/303 (11%)
Query: 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQ 236
T+ + L S + A ++ + + + G + LV LL+ + Q
Sbjct: 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61
Query: 237 EHSVTALLNLSLHEN-NKTLITNAGAIKSLVYVL-KTGTETSKQNAACALMSLALIEENK 294
+ + AL NL NK I+ V +L +TG ++ L +L+ +E K
Sbjct: 62 QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121
Query: 295 SSIGACGAIPPLVSLLIYGSSRG----------------KKDALTTLYKLCSLKQNKERA 338
+ A A+P L +I S +A L L S ++
Sbjct: 122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180
Query: 339 VSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAAL---------- 388
+ + + + + + ++
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240
Query: 389 ------VEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAK 442
+ S K L + K G L I + L A
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300
Query: 443 HKA 445
+A
Sbjct: 301 LEA 303
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 85.3 bits (210), Expect = 5e-18
Identities = 35/296 (11%), Positives = 84/296 (28%), Gaps = 31/296 (10%)
Query: 187 QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNL 246
+ + +A LR L+ + + + SG + +L+ ++ ++ + +
Sbjct: 153 EVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCM 212
Query: 247 -SLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAAC---------------ALMSLALI 290
LH + L + T K + C L
Sbjct: 213 CVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN 272
Query: 291 EENKSSIGACGAIPPLVSLLIYGSSRGKKDA-------LTTLYKLCSLKQNKERAVSAGA 343
+ + AI ++L+ +A LT L S ++ +
Sbjct: 273 PKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKG 332
Query: 344 VRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGK--- 400
+ + +L + +LS ++ + + + + +
Sbjct: 333 LPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQ-VFPEVTRLLTSHTGNTSNSE 391
Query: 401 ---EFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG-SVRAKHKAETLLGYL 452
A T+ L A + + ++ L ++ S +A A LL +
Sbjct: 392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 82.2 bits (202), Expect = 5e-17
Identities = 25/224 (11%), Positives = 69/224 (30%), Gaps = 16/224 (7%)
Query: 127 LPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGL 186
+ N + + C + + + + ++ ++ +
Sbjct: 234 EYNARNAYTEKSSTGCFSNKSDKMM-NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLM 292
Query: 187 QSSSVAIKRSAA--AKLRLLAKN----RSDNRVLIGESGAVPALVPLLKCSDPWTQEHSV 240
S A A L A ++++ + +P + LL+ +
Sbjct: 293 GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGA 352
Query: 241 TALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQ------NAACALMSLALI-EEN 293
+ L N+S H ++ N + +L + T + +A + +L +
Sbjct: 353 SLLSNMSRHPLLHRVMGNQV-FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL 411
Query: 294 KSSIGACGAIPPLVSLLIYGSS-RGKKDALTTLYKLCSLKQNKE 336
+ + +++L +S + + A L + S K+ +
Sbjct: 412 AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 1e-13
Identities = 33/250 (13%), Positives = 76/250 (30%), Gaps = 22/250 (8%)
Query: 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237
+V+ C+ L + S + + R L N + +G SD
Sbjct: 207 SVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCF------SNKSDKMMNN 260
Query: 238 HSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAAC-ALMSLALIEENKSS 296
+ L + + ++ AI++ + ++ + + A AL +L + SS
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320
Query: 297 ------IGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGM 350
+P + LL G+S + + L + + + +
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV-FPEVTRL 379
Query: 351 LAGQGEGMAEKAMVVLSLLAGI-------AEGREAIVEENGIAALVEAIEDG-SVKGKEF 402
L + ++ S + + + + + ++ S K E
Sbjct: 380 LTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA 439
Query: 403 AVLTLLQLCA 412
A L L + +
Sbjct: 440 ARLLLSDMWS 449
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 7e-05
Identities = 13/68 (19%), Positives = 25/68 (36%)
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
I V+ + K + + C + + + + GGI LV L ++ + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 445 AETLLGYL 452
A L L
Sbjct: 64 AAGALRNL 71
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 5e-30
Identities = 48/255 (18%), Positives = 91/255 (35%), Gaps = 7/255 (2%)
Query: 211 NRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLK 270
++ G AL L K +QE L + + + + G +K+L+ +
Sbjct: 487 RITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMAL 546
Query: 271 TGTETSKQNAACALMSLALIEENKSSIGA---CGAIPPLVSLLIYGSSRGKK-DALTTLY 326
GTE K++A AL + + + S I PL++LL + + ++L L
Sbjct: 547 EGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT 606
Query: 327 KLCSLKQ-NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENG- 384
L S+ + ++R + V + L + A L L + + N
Sbjct: 607 NLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDR 666
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVK-NRGLLVREGGIPPLVALSQTGSVRAKH 443
+ L ED + L + + SVK +L + L L S +H
Sbjct: 667 VKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQH 726
Query: 444 KAETLLGYLREPRQE 458
+ ++ + +E
Sbjct: 727 RGIVIILNMINAGEE 741
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 5e-28
Identities = 56/340 (16%), Positives = 112/340 (32%), Gaps = 40/340 (11%)
Query: 153 CLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSSS--VAIKRSAAAKLRLLAKNRSD 210
L L I + C L I+R AA L L +
Sbjct: 353 GLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC 412
Query: 211 NRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLS----------------------- 247
LI + ++ AL+ L + + VT +NL
Sbjct: 413 KEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHI 472
Query: 248 ----------LHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSI 297
T++ N G +L + KT + S++ A L ++ ++E + +
Sbjct: 473 PEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKV 532
Query: 298 GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK---ERAVSAGAVRPLVGMLAGQ 354
G + L+ + + G+ +GK+ A L ++ + S +RPL+ +L
Sbjct: 533 VQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD 592
Query: 355 GEGMA-EKAMVVLSLLAGIAEG-REAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412
+ ++++ L+ LA + E R+ I++E G++ + + + + A L L
Sbjct: 593 CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652
Query: 413 ESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
+ + L L + L +
Sbjct: 653 SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAII 692
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 50/276 (18%), Positives = 96/276 (34%), Gaps = 19/276 (6%)
Query: 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLN 245
+ ++ +++ A + + A ++ D + E G V L L + + ++ L
Sbjct: 298 MATTDDELQQRVACECLIAASSKKDKAKALCEQG-VDILKRLYHSKNDGIRVRALVGLCK 356
Query: 246 LSLHENNKTLITNA--GAIKSLVYVLK------TGTETSKQNAACALMSLALIEENKSSI 297
L + I GA L + + ++ AA L L L E K +
Sbjct: 357 LGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKL 416
Query: 298 GA-CGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGE 356
+I L+ L G+ +TT LC+ + +E + +
Sbjct: 417 IEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEH 476
Query: 357 GMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416
L + I + + E AL + S +E L +C +
Sbjct: 477 --------ELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-E 527
Query: 417 NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
RG +V+EGG+ L+ ++ G+ + K A L +
Sbjct: 528 LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI 563
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 5e-28
Identities = 43/247 (17%), Positives = 88/247 (35%), Gaps = 30/247 (12%)
Query: 171 SPEDLQPTVKICIDGLQSSS--VAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL 228
S D++ T++ + L++ + +AA ++ +S+ R + + + L+ LL
Sbjct: 2 SNADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL 61
Query: 229 KCSDPWTQEHSVTALLNLSL-HENNKTLITNAGAIKSLVYVLKTGTETSKQ-NAACALMS 286
K + Q AL NL +NK + + L+ VLK + + L +
Sbjct: 62 KVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWN 121
Query: 287 LALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRP 346
L+ ++ K+ + A+ L +I S + L G +R
Sbjct: 122 LSSNDKLKNLM-ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN---VTGCLR- 176
Query: 347 LVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENG-IAALVEAIEDGSVKGKEFAVL 405
++ + A+GR+A+ +G I +LV + +
Sbjct: 177 --------------------NMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKA 216
Query: 406 TLLQLCA 412
T +C
Sbjct: 217 TENCVCI 223
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 8e-19
Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 18/164 (10%)
Query: 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS-DPWTQEHSVTALL 244
L+ + ++R+ LR L +DN++ + E VP L+ +LK + D T++ L
Sbjct: 61 LKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLW 120
Query: 245 NLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQ---------------NAACALMSLAL 289
NLS ++ K L+ + ++ + + N L +++
Sbjct: 121 NLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180
Query: 290 I-EENKSSIGAC-GAIPPLVSLLIYGSSRGKKDALTTLYKLCSL 331
+ + ++ C G I LV + + + D T +C L
Sbjct: 181 AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCIL 224
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 1e-08
Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 4/140 (2%)
Query: 303 IPPLVSLLIYGSSRG--KKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMA 359
+ VS+L A T + C + ++R + L+ +L Q E +
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 360 EKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNR 418
L L + + + E NG+ L++ ++ + + LL + + K +
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129
Query: 419 GLLVREGGIPPLVALSQTGS 438
L++ E + + S
Sbjct: 130 NLMITEALLTLTENIIIPFS 149
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 4e-07
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 337 RAVSAGAVRPLVGMLAGQGEGMAEK---AMVVLSLLAGIAEGREAIVEENGIAALVEAIE 393
A + V ML + A + +E R+ + + GI L++ ++
Sbjct: 3 NADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK 62
Query: 394 DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVA-LSQTGSVRAKHKAETLLGYL 452
+ + L L E N+ + G+P L+ L QT + K + LL L
Sbjct: 63 VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 82.8 bits (204), Expect = 8e-18
Identities = 44/273 (16%), Positives = 85/273 (31%), Gaps = 11/273 (4%)
Query: 150 PEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRS 209
P ++ + E ++S QP + Q++ + A L L +N
Sbjct: 13 LVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMD 72
Query: 210 DNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNL-SLHENNKTLITNAGAIKSLVYV 268
+ SG + L+ + + + + + GA++ L+ +
Sbjct: 73 NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132
Query: 269 LKTGTETS-KQNAACALMSLAL-IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLY 326
L + + A A+ L E L+ + + K + L
Sbjct: 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQ 192
Query: 327 KLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA--GIAEGREAIVEEN 383
L ++K S G V+ LV ++ + E + L L RE E
Sbjct: 193 NLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL 252
Query: 384 GIAALVEAIEDGSVKGKEFA-----VLTLLQLC 411
G+ L+ + +E+ LLQ C
Sbjct: 253 GLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 5e-17
Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 7/196 (3%)
Query: 264 SLVYVLKTGTETSKQNAACALMSLA-LIE--ENKSSIGACGAIPPLVSLLIYGSSRG-KK 319
+ +Q AL LA L E +N + + LV + + G +
Sbjct: 41 MPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRW 100
Query: 320 DALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQG-EGMAEKAMVVLS-LLAGIAEGR 376
A + +E+ + GA+R L+ +L + + KA+ +S L+ G
Sbjct: 101 RAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL 160
Query: 377 EAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT 436
+ +G + L+ A++ K K + L L +++G L G + LVAL +T
Sbjct: 161 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT 220
Query: 437 GSVRAKHKAETLLGYL 452
L L
Sbjct: 221 EHSPFHEHVLGALCSL 236
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 4e-10
Identities = 39/276 (14%), Positives = 83/276 (30%), Gaps = 36/276 (13%)
Query: 210 DNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVL 269
N I + + L + P ++ V + N++ +N + GA+K ++ L
Sbjct: 448 FNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYL 507
Query: 270 KTGTETSKQNAACALMSLA--LIEENKSSI----GACGAIPPLVSLLIYGSSRGKK---- 319
+ + +L LI N I A AIP L LL +
Sbjct: 508 ANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN 567
Query: 320 ----------DALTTLYKLCSLKQN------KERAVSAGAVRPLVGMLAGQGEGMAEKAM 363
+AL L L S + + K + + ++ + + +
Sbjct: 568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTL 627
Query: 364 VVLSLLAGIAEGREAIVEENGIAA-------LVEAIEDGSVKGKEFAVLTLLQLCAESVK 416
++S + A LV+ ++ V+ + +
Sbjct: 628 ELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL 687
Query: 417 N-RGLLVREGGIPPLVAL--SQTGSVRAKHKAETLL 449
+ LL ++ I + + Q + + + L
Sbjct: 688 IAKELLTKKELIENAIQVFADQIDDIELRQRLLMLF 723
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 3e-07
Identities = 57/366 (15%), Positives = 99/366 (27%), Gaps = 96/366 (26%)
Query: 17 RQNLYTPPSASSTKIHRSIGRSMRTIRSNLYQTDNSCSFVSVPDNSGYLSENLTESVIDM 76
R LY K + S + +R L + V + G +
Sbjct: 116 RDRLYNDNQ-VFAKYNVSRLQPYLKLRQALLE-LRPAKNVLI---DG------------V 158
Query: 77 RLGE----LASKTNDAKSVKSTISEDDY-LNVSQAFSDFSVCSSDISGELQRLASLPSPE 131
LG +A + V+ + + LN+ S + LQ+L P
Sbjct: 159 -LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-----ETVLEMLQKLLYQIDPN 212
Query: 132 NILRQPNENNCQAELEPEPEPCLGFLQRENF-----------STEIIESISPEDLQPTVK 180
R + +N + + L+ + + + + + +L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF---NLS---- 265
Query: 181 IC-----------IDGLQSSSVAIKR--------SAAAKLRLLAKNRSDNRVLIGESGAV 221
C D L +++ + LL K L +
Sbjct: 266 -CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK------YLDCRPQDL 318
Query: 222 PALV----PLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSK 277
P V P S A + H N L T I+S + VL+ E K
Sbjct: 319 PREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTT---IIESSLNVLEP-AEYRK 373
Query: 278 QNAACALMSLALIEENKSSIGACGAIPP--LVSLLIYGSSRGKKDALTTLYKLCSL-KQN 334
L++ + IP L + + L+K + KQ
Sbjct: 374 M-----FDRLSVFPPSAH-------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 335 KERAVS 340
KE +S
Sbjct: 422 KESTIS 427
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 1e-05
Identities = 74/498 (14%), Positives = 148/498 (29%), Gaps = 160/498 (32%)
Query: 74 IDMRLGELASKTNDAKSVKSTISEDDYLNVSQAFSDFSVCSSDISGELQRLASLPSPENI 133
+D GE + D SV ED ++ +F D+ + + S ++I
Sbjct: 7 MDFETGEHQYQYKDILSV----FEDAFV------DNFDC--KDVQDMPKSILSKEEIDHI 54
Query: 134 LRQPNENNCQAE-----LEPEPEPCLG-FLQ---RENFSTEIIESISPEDLQPTVKI--- 181
+ + + L + E + F++ R N+ ++ I E QP++
Sbjct: 55 IMSKDAVS-GTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMY 112
Query: 182 --CIDGLQSSS-VAIKRS-----AAAKLR-LLAKNRSDNRVLI-GESGA---VPALVPLL 228
D L + + V K + KLR L + R VLI G G+ + L
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VA-LD 169
Query: 229 KCSDP-----------W---TQEHSVTALL----NL---------SLHENNKTLITNAGA 261
C W +S +L L S +++ + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 262 IKS-LVYVLKTGTETSKQNAACALMSLALIEENKSSIGA----C---------------- 300
I++ L +LK SK C L+ L + +N + A C
Sbjct: 230 IQAELRRLLK-----SKPYENC-LLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 301 GAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAE 360
A +SL + + + + L K + P
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPR------------- 328
Query: 361 KAMVVLSLLAGIAEGREAIVE------------ENGIAALVEAIEDGSVKG--KEFA--- 403
LS++A R+ + I + + +E + +
Sbjct: 329 ----RLSIIA--ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 404 --------VLTLL---------QLCAESVKNRGLLVREG-----GIPPL--VALSQTGSV 439
+L+L+ + + L+ ++ IP + + +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 440 RAKHKAETLLGYLREPRQ 457
A H+ +++ + P+
Sbjct: 443 YALHR--SIVDHYNIPKT 458
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 4e-04
Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 32/173 (18%)
Query: 3 SL--EDSQSTSNRFPLRQNLYTPPSASSTKIHRSIGRSMRTIRSNLYQTDNSCSFVSVPD 60
SL + + ++ P + +HRSI ++ + +D+ + P
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT--FDSDD----LIPPY 468
Query: 61 NSGY--------LSE-NLTESVIDMR-----LGELASK-TNDAKSVKSTISEDDYLNVSQ 105
Y L E + R L K +D+ + ++ S + L +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 106 AFSDFSVCSSDISGELQRLAS-----LPSPE-NILRQPNENNCQAELEPEPEP 152
+ + +C +D + +RL + LP E N++ + + L E E
Sbjct: 529 FYKPY-ICDND--PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 29/281 (10%), Positives = 74/281 (26%), Gaps = 50/281 (17%)
Query: 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWT 235
+ L + + S+A L+L G AV + +
Sbjct: 22 KLNDDELFRLLDDHNSLKRISSARVLQL-----------RGGQDAVRLAIEFCSDKNYIR 70
Query: 236 QEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKS 295
++ L + + + + + N L + + A + K+
Sbjct: 71 RDIGAFILGQIKICKKCEDNVFNI----LNNMALNDKSACVRATAIESTAQRC----KKN 122
Query: 296 SIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQG 355
I + + S+ ++ + + + L+ +L
Sbjct: 123 PIYSPKIVEQSQITAFDKSTNVRRATAFAISVIN----------DKATIPLLINLLKDPN 172
Query: 356 EGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV 415
+ A +++ I + VE ++D + + + A++ L + V
Sbjct: 173 GDVRNWAAFAINI---NKYDNSDIRD-----CFVEMLQDKNEEVRIEAIIGLSYRKDKRV 224
Query: 416 KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456
+ L + +V G L +
Sbjct: 225 -----------LSVLCDELKKNTVY--DDIIEAAGELGDKT 252
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 4e-06
Identities = 55/240 (22%), Positives = 88/240 (36%), Gaps = 51/240 (21%)
Query: 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237
V++ I LQ S ++R+AA L K IG+ AV L+ LK D W +
Sbjct: 20 KVEMYIKNLQDDSYYVRRAAA---YALGK--------IGDERAVEPLIKALKDEDAWVRR 68
Query: 238 HSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSI 297
+ AL I + A++ L+ LK +Q+AA AL I
Sbjct: 69 AAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVAL----------GQI 108
Query: 298 GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEG 357
G A+ PL+ L + A L ++ AV PL+ L +
Sbjct: 109 GDERAVEPLIKALKDEDWFVRIAAAFALGEIG----------DERAVEPLIKALKDEDGW 158
Query: 358 MAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKN 417
+ + A L + G E AA+ + E G+ ++ AV L + + +
Sbjct: 159 VRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHHH 208
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 45/240 (18%), Positives = 82/240 (34%), Gaps = 51/240 (21%)
Query: 214 LIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGT 273
L + V + L+ + + + AL + + A++ L+ LK
Sbjct: 14 LRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDED 63
Query: 274 ETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333
++ AA AL IG A+ PL+ L ++ A L ++
Sbjct: 64 AWVRRAAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG---- 109
Query: 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIE 393
AV PL+ L + + A L + G E VE L++A++
Sbjct: 110 ------DERAVEPLIKALKDEDWFVRIAAAFALGEI-----GDERAVE-----PLIKALK 153
Query: 394 DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453
D ++ A L ++ E V + L++TG+ A+ A L +
Sbjct: 154 DEDGWVRQSAADALGEIGGERV-----------RAAMEKLAETGTGFARKVAVNYLETHK 202
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 54/230 (23%), Positives = 84/230 (36%), Gaps = 51/230 (22%)
Query: 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237
V++ I LQ S ++R+AA L IG+ AV L+ LK D W +
Sbjct: 15 KVEMYIKNLQDDSYYVRRAAAYALGK-----------IGDERAVEPLIKALKDEDAWVRR 63
Query: 238 HSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSI 297
+ AL I + A++ L+ LK +Q+AA AL I
Sbjct: 64 AAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVAL----------GQI 103
Query: 298 GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEG 357
G A+ PL+ L + A L ++ AV PL+ L +
Sbjct: 104 GDERAVEPLIKALKDEDWFVRIAAAFALGEIG----------DERAVEPLIKALKDEDGW 153
Query: 358 MAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTL 407
+ + A L + G E AA+ + E G+ ++ AV L
Sbjct: 154 VRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYL 193
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 45/242 (18%), Positives = 81/242 (33%), Gaps = 51/242 (21%)
Query: 215 IGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTE 274
+ V + L+ + + + AL I + A++ L+ LK
Sbjct: 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYAL----------GKIGDERAVEPLIKALKDEDA 59
Query: 275 TSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334
++ AA AL IG A+ PL+ L ++ A L ++
Sbjct: 60 WVRRAAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG----- 104
Query: 335 KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED 394
AV PL+ L + + A L + G E VE L++A++D
Sbjct: 105 -----DERAVEPLIKALKDEDWFVRIAAAFALGEI-----GDERAVE-----PLIKALKD 149
Query: 395 GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454
++ A L ++ E V + L++TG+ A+ A L +
Sbjct: 150 EDGWVRQSAADALGEIGGERV-----------RAAMEKLAETGTGFARKVAVNYLETHKS 198
Query: 455 PR 456
Sbjct: 199 LI 200
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 4e-04
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 32/143 (22%)
Query: 183 IDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTA 242
+ + ++R + L++ + A L+ L D + +
Sbjct: 18 GSHMADENKWVRRDVS---TALSRMGDE---------AFEPLLESLSNEDWRIRGAAAWI 65
Query: 243 LLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGA 302
+ N + A++ L+ +L+ + + AA +L IG
Sbjct: 66 IGNFQ----------DERAVEPLIKLLEDDSGFVRSGAARSL----------EQIGGERV 105
Query: 303 IPPLVSLLIYGSSRGKKDALTTL 325
+ L G+ +K A+ L
Sbjct: 106 RAAMEKLAETGTGFARKVAVNYL 128
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 100.0 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.98 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.97 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.97 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.97 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.97 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.97 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.97 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.97 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.96 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.96 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.96 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.96 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.96 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.96 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.96 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.95 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.94 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.94 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.93 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.91 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.91 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.9 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.9 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.89 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.72 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.71 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.69 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.69 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.68 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.66 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.65 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.64 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.62 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.55 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.54 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.52 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.43 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.42 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.39 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.28 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 99.22 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.17 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.17 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.17 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 99.17 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.15 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.15 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.09 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.02 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.94 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.93 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.81 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.8 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.77 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.77 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.75 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.75 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 98.71 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.7 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.7 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.62 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.58 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.57 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.53 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 98.41 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.32 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 98.28 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 98.01 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.99 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.92 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.83 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.82 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.71 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 97.43 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.34 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 97.33 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.2 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.16 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 97.11 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 97.1 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 97.1 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 96.78 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 96.77 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 96.66 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 96.64 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 96.48 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 96.42 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 96.25 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.25 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 96.23 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 96.03 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 95.94 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 95.42 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 95.27 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 95.2 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 94.94 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 94.78 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 94.71 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 94.54 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 94.51 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 93.92 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 93.82 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 93.8 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 93.58 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 93.48 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 93.4 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 93.07 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 93.03 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 92.84 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 92.65 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 90.96 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 90.9 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 90.79 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 89.23 | |
| 3qml_C | 315 | Protein SLS1, nucleotide exchange factor SIL1; arm | 85.44 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 84.3 | |
| 3gae_A | 253 | Protein DOA1; UFD3, CDC48, armadillo repeat, nucle | 83.72 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 80.01 |
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=303.34 Aligned_cols=263 Identities=23% Similarity=0.263 Sum_probs=240.1
Q ss_pred HHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCCCc-hHHHHHh-cCcH
Q 012413 196 SAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-----------SDPWTQEHSVTALLNLSLHEN-NKTLITN-AGAI 262 (464)
Q Consensus 196 ~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-----------~~~~v~~~A~~aL~~La~~~~-~~~~i~~-~g~i 262 (464)
+|+++|.+++.+ +++|..+.+.|++++|+.+|.. .++.+++.|+++|.||+.+.+ ++..+.. .|+|
T Consensus 167 qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 167 PAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 999999999887 9999999999999999999952 347899999999999999764 6666655 5669
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHh-hcCChhhHHHHHHHHHHHhc-CcchHHHH
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLL-IYGSSRGKKDALTTLYKLCS-LKQNKERA 338 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL-~~~~~~v~~~A~~aL~nL~~-~~~~~~~i 338 (464)
|.|+.+|++++++++..|+|+|.+|+.. +++|..+++.|+||+|+++| .+.+..+++.|+.+|+||+. .++++..+
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999999999999999999985 57899999999999999975 55688999999999999999 77889888
Q ss_pred H-HcCCHHHHHHhhcCCCH----HHHHHHHHHHHHHh----CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012413 339 V-SAGAVRPLVGMLAGQGE----GMAEKAMVVLSLLA----GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 339 v-~~g~v~~Lv~lL~~~~~----~v~~~A~~aL~nLa----~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 409 (464)
+ ..|+++.|+.+|.+... .+++.|+++|.||+ ..+++++.+++.|+++.|+++|++++..++..|+++|+|
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 405 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 8 69999999999987654 48999999999999 489999999999999999999999999999999999999
Q ss_pred HhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCC
Q 012413 410 LCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 410 L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~ 459 (464)
|+..+++++..+.+.|++++|+++++++++.+++.|+|+|++|..+++..
T Consensus 406 La~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 406 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp HHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhh
Confidence 99888999999999999999999999999999999999999999887653
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=291.49 Aligned_cols=268 Identities=22% Similarity=0.251 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCCC-chHHHHHh
Q 012413 191 VAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-----------SDPWTQEHSVTALLNLSLHE-NNKTLITN 258 (464)
Q Consensus 191 ~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-----------~~~~v~~~A~~aL~~La~~~-~~~~~i~~ 258 (464)
...+..|+++|.+++.+ +++|..+.+.|++++|+.+|.. .++.+++.|+++|.||+.+. +++..+..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35567899999999998 8999999999999999999952 34789999999999999875 47777765
Q ss_pred -cCcHHHHHHHHccCCHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHh-hcCChhhHHHHHHHHHHHhc-Ccc
Q 012413 259 -AGAIKSLVYVLKTGTETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLL-IYGSSRGKKDALTTLYKLCS-LKQ 333 (464)
Q Consensus 259 -~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL-~~~~~~v~~~A~~aL~nL~~-~~~ 333 (464)
.|+||.|+.+|++++++++..|+|+|.||+.. +++|..+++.|+||+|+++| .+.+..+++.|+.+|+||+. .++
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 55699999999999999999999999999985 57899999999999999975 55788999999999999999 668
Q ss_pred hHHHHH-HcCCHHHHHHhhcCCCH----HHHHHHHHHHHHHhC----CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHH
Q 012413 334 NKERAV-SAGAVRPLVGMLAGQGE----GMAEKAMVVLSLLAG----IAEGREAIVEENGIAALVEAIEDGSVKGKEFAV 404 (464)
Q Consensus 334 ~~~~iv-~~g~v~~Lv~lL~~~~~----~v~~~A~~aL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 404 (464)
++..++ ..|+++.|+.+|.+.+. .+++.|+++|.||+. .+++++.+.+.|+++.|+++|++++..++..|+
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence 888888 69999999999987654 589999999999994 899999999999999999999999999999999
Q ss_pred HHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCC
Q 012413 405 LTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 405 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~ 459 (464)
++|+||+..+++++..+.+.|++++|+++++++++.+++.|+|+|.+|...++..
T Consensus 285 ~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 285 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999888999999999999999999999999999999999999999876653
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=290.81 Aligned_cols=322 Identities=14% Similarity=0.097 Sum_probs=276.0
Q ss_pred hHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCCch
Q 012413 98 DDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQ 176 (464)
Q Consensus 98 ~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~ 176 (464)
..+++|.++|.+ ++.++.+++.+|+.++...+.... .+.+ .
T Consensus 2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~-------------------------------~i~~-------~ 43 (457)
T 1xm9_A 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQ-------------------------------QVYQ-------L 43 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHH-------------------------------HHHH-------T
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHH-------------------------------HHHH-------c
Confidence 467889999988 888999999999998643333221 1111 3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
+.|+.|+++|+++++.++..|+++|++++.++++++..+++.|+||+|+.+|+ +.++++++.|+++|.||+.+++++..
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~ 123 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHH
Confidence 67888999999999999999999999999998999999999999999999999 78999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHc--------c--------CCHHHHHHHHHHHHHhcccccchhhhhcc-CChHHHHHHhhc------
Q 012413 256 ITNAGAIKSLVYVLK--------T--------GTETSKQNAACALMSLALIEENKSSIGAC-GAIPPLVSLLIY------ 312 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~--------~--------~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~-g~i~~Li~lL~~------ 312 (464)
+++ |++|.|+.+|. + .+..++..|+|+|.||+.+++++..+.+. |++++|+.+|.+
T Consensus 124 i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 202 (457)
T 1xm9_A 124 LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASR 202 (457)
T ss_dssp HHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTC
T ss_pred HHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccC
Confidence 999 99999999993 2 24667779999999999998899999997 999999988864
Q ss_pred C-------------------------------------------------------------------------------
Q 012413 313 G------------------------------------------------------------------------------- 313 (464)
Q Consensus 313 ~------------------------------------------------------------------------------- 313 (464)
.
T Consensus 203 ~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (457)
T 1xm9_A 203 CDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS 282 (457)
T ss_dssp TTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSH
T ss_pred CchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCc
Confidence 1
Q ss_pred --------------ChhhHHHHHHHHHHHhcCcch-H----HHHH-HcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 314 --------------SSRGKKDALTTLYKLCSLKQN-K----ERAV-SAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 314 --------------~~~v~~~A~~aL~nL~~~~~~-~----~~iv-~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
++.+++.|+++|+||+..... . +.++ +.|++|.|+.+|.+++.+++..|+++|.||+.++
T Consensus 283 ~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 234556688999999885422 1 2334 6899999999999999999999999999999988
Q ss_pred hhHHHHHhcCcHHHHHHHHhcCC------HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC-CHHHHHHHH
Q 012413 374 EGREAIVEENGIAALVEAIEDGS------VKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG-SVRAKHKAE 446 (464)
Q Consensus 374 ~~~~~i~~~g~i~~Lv~lL~~~~------~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~ 446 (464)
+++..|. .|++++|+++|...+ +++...++++|+++...++.+...+.+.|++++|+.++.++ ++++++.|.
T Consensus 363 ~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~ 441 (457)
T 1xm9_A 363 LLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441 (457)
T ss_dssp GGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence 8776665 589999999999763 46888999999999988888999999999999999999999 999999999
Q ss_pred HHHHHhhcCCCCC
Q 012413 447 TLLGYLREPRQEG 459 (464)
Q Consensus 447 ~aL~~L~~~~~~~ 459 (464)
|+|.++..+..-+
T Consensus 442 ~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 442 LLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHTTSSSTTCS
T ss_pred HHHHHHHcchhhh
Confidence 9999999876644
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=306.13 Aligned_cols=352 Identities=16% Similarity=0.150 Sum_probs=286.9
Q ss_pred hhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchh--hhhcCcccCcccccCCCchhhhhhhccc--C----------
Q 012413 97 EDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPEN--ILRQPNENNCQAELEPEPEPCLGFLQRE--N---------- 161 (464)
Q Consensus 97 e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~--~~~~~~~~~~~e~~~p~l~~lv~~L~~~--~---------- 161 (464)
+.-+++|..++.. .+.+|..+.-+|-+++....... .....+ ...+..+.++.+|... +
T Consensus 329 ~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g------~i~~Lv~~l~~lL~~~~~d~~v~~~Avea 402 (810)
T 3now_A 329 EQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDG------AALKLAEACRRFLIKPGKDKDIRRWAADG 402 (810)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTT------HHHHHHHHHHHHHHCSSCCSSHHHHHHHH
T ss_pred HcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhc------cHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3445888888876 66778888888888865322111 111001 0222233445665544 1
Q ss_pred -----chhhHhhhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCch--------------------------
Q 012413 162 -----FSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSD-------------------------- 210 (464)
Q Consensus 162 -----~s~~i~~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~-------------------------- 210 (464)
...++.+.+... .+.++.|+.+|+++++.++..|+++|.|++.+.+.
T Consensus 403 LayLS~~~~vk~~lv~d--~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~ 480 (810)
T 3now_A 403 LAYLTLDAECKEKLIED--KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDD 480 (810)
T ss_dssp HHHHTTSHHHHHHHHHC--HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHH
T ss_pred HHHHhCCcHHHHHHHHc--cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcccccccc
Confidence 122333333322 57999999999999999999999999999986431
Q ss_pred ---hH---HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHH
Q 012413 211 ---NR---VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACAL 284 (464)
Q Consensus 211 ---~r---~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 284 (464)
.+ +.+++.|++|.|+.+|+++++.+++.|+|+|+||+.+++++..+++.|++|+|+.+|++++...+..|+|+|
T Consensus 481 ~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL 560 (810)
T 3now_A 481 VDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQAL 560 (810)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHH
Confidence 22 677899999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHhcccccchhhhh---ccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHH
Q 012413 285 MSLALIEENKSSIG---ACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMA 359 (464)
Q Consensus 285 ~~Ls~~~~~~~~i~---~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~ 359 (464)
.+|+.+.+....+. ..|++|+|+.+|.++ +...+..|+++|.||+.. ++++..++++|+++.|+.+|.+.+..++
T Consensus 561 ~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq 640 (810)
T 3now_A 561 ARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLT 640 (810)
T ss_dssp HHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHH
T ss_pred HHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHH
Confidence 99987643322221 246999999999866 334557899999999996 5789999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHhhHHHHHh-cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH-cCChHHHHHhhhcC
Q 012413 360 EKAMVVLSLLAGIAEGREAIVE-ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR-EGGIPPLVALSQTG 437 (464)
Q Consensus 360 ~~A~~aL~nLa~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~s~ 437 (464)
..|+++|+||+..++.+..+++ .|+++.|+.++.+++..+|..|+|+|++|+.+++.....+.+ .|++++|+.++.++
T Consensus 641 ~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~ 720 (810)
T 3now_A 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP 720 (810)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC
Confidence 9999999999999888888886 789999999999999999999999999999988888888888 89999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCC
Q 012413 438 SVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 438 ~~~v~~~A~~aL~~L~~~~ 456 (464)
+.++++.|+|+|.++....
T Consensus 721 d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 721 SPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp SHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhCC
Confidence 9999999999999998743
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=294.49 Aligned_cols=350 Identities=18% Similarity=0.187 Sum_probs=298.5
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCC--CchhhhhcCcccCcccccCCCchhhhhhhcccCch------hhH
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLP--SPENILRQPNENNCQAELEPEPEPCLGFLQRENFS------TEI 166 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~--~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s------~~i 166 (464)
-.+.+++|.+.+.+ ++..+..+..+++++.+.. .++..++++| .+|.| |.+|+..+.. ..+
T Consensus 55 ~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G-------~ip~L---V~lL~~~~~~~lq~~Aa~a 124 (510)
T 3ul1_B 55 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG-------LIPKF---VSFLGKTDCSPIQFESAWA 124 (510)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTT-------HHHHH---HHHTTCTTCHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCC-------CHHHH---HHHHCCCCCHHHHHHHHHH
Confidence 35568888888876 8888999999999997653 3567777777 66666 8888654421 111
Q ss_pred hhhcCCCCc--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCC-----H
Q 012413 167 IESISPEDL--------QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSD-----P 233 (464)
Q Consensus 167 ~~~~~~~~~--------~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~-----~ 233 (464)
+..+..+.- .++|+.|+.+|+++++++++.|+++|++++.+++.+|..+.+.|++++|+.+|.+.+ .
T Consensus 125 L~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~ 204 (510)
T 3ul1_B 125 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 204 (510)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCH
T ss_pred HHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhH
Confidence 222211110 258999999999999999999999999999999999999999999999999998754 4
Q ss_pred HHHHHHHHHHHHhcCCCchH-HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhh
Q 012413 234 WTQEHSVTALLNLSLHENNK-TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLI 311 (464)
Q Consensus 234 ~v~~~A~~aL~~La~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~ 311 (464)
.+++.++++|.+++.+.... ......|++|.|+.+|.+++++++..|+|+|.+|+.+. +....+.+.|+++.|+++|.
T Consensus 205 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 284 (510)
T 3ul1_B 205 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284 (510)
T ss_dssp HHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc
Confidence 67889999999999875433 33445789999999999999999999999999999885 45667788999999999999
Q ss_pred cCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHH
Q 012413 312 YGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALV 389 (464)
Q Consensus 312 ~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv 389 (464)
+++..++..++++|+|++.. +..+..+++.|+++.|+.+|.+++..++..|+++|+||+ ..+..+..+.+.|+++.|+
T Consensus 285 ~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv 364 (510)
T 3ul1_B 285 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364 (510)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHH
Confidence 99999999999999999884 567788899999999999999999999999999999999 5677888999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 390 EAIEDGSVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 390 ~lL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.++.+.+.+++..|+++|+|++.. +.++...+.+.|++++|+.+|.+.+++++..+.++|.+|.+.
T Consensus 365 ~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999975 567778899999999999999999999999999999998753
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=290.05 Aligned_cols=348 Identities=18% Similarity=0.187 Sum_probs=295.1
Q ss_pred hhHHHHHHhhhhh-cccchhhhHHHHHHhhcCC--CchhhhhcCcccCcccccCCCchhhhhhhcccCchh------hHh
Q 012413 97 EDDYLNVSQAFSD-FSVCSSDISGELQRLASLP--SPENILRQPNENNCQAELEPEPEPCLGFLQRENFST------EII 167 (464)
Q Consensus 97 e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~--~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~------~i~ 167 (464)
.+.++.+.+.+.. ++..+..+.+.+.++.+.. .++..++..| .+|.+ |.+|...++.+ .++
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G-------~ip~L---v~lL~~~~~~~~q~~Aa~aL 144 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG-------LIPKF---VSFLGKTDCSPIQFESAWAL 144 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTT-------HHHHH---HHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCC-------CHHHH---HHHHcCCCCHHHHHHHHHHH
Confidence 3456777776665 7888889999999987543 3456677666 66666 77776544211 111
Q ss_pred hhcCCCCc--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCC-----HH
Q 012413 168 ESISPEDL--------QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSD-----PW 234 (464)
Q Consensus 168 ~~~~~~~~--------~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~-----~~ 234 (464)
..+..+.- .++|+.|+.+|.++++++++.|+++|++++.+++.+|..+.+.|++++|+.+|...+ ..
T Consensus 145 ~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~ 224 (529)
T 3tpo_A 145 TNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 224 (529)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHH
Confidence 21211110 258899999999999999999999999999999999999999999999999998744 46
Q ss_pred HHHHHHHHHHHhcCCCchH-HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhc
Q 012413 235 TQEHSVTALLNLSLHENNK-TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIY 312 (464)
Q Consensus 235 v~~~A~~aL~~La~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~ 312 (464)
+.+.++++|.+++.+.... ......|++|.|+.+|.+++++++..++|+|.+++.+. +....+.+.|+++.|+.+|.+
T Consensus 225 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~ 304 (529)
T 3tpo_A 225 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 304 (529)
T ss_dssp HHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC
Confidence 7889999999999875433 34445789999999999999999999999999999885 556677889999999999999
Q ss_pred CChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHH
Q 012413 313 GSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVE 390 (464)
Q Consensus 313 ~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~ 390 (464)
++..++..++.+|+||+.. +.....+++.|+++.|+.+|.+++..++..|+++|+||+ ..+..+..+.+.|+++.|+.
T Consensus 305 ~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~ 384 (529)
T 3tpo_A 305 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 384 (529)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHH
Confidence 9999999999999999884 567788899999999999999999999999999999999 56778888999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 391 AIEDGSVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 391 lL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
++.+++.+++..|+|+|+|++.. ++++...+++.|++++|+++|.+.+++++..+.++|.+|.+
T Consensus 385 lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 385 VLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999975 56777889999999999999999999999999999999875
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=298.29 Aligned_cols=345 Identities=15% Similarity=0.104 Sum_probs=288.8
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhc-------ccCchhhHh
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQ-------RENFSTEII 167 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~-------~~~~s~~i~ 167 (464)
+...+++|.+++.+ ++.++..+..+|+.+++..+... ..|.+..+-.+.. ..+..+.+.
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~-------------~~~~l~~la~~s~~~v~~~~~ld~~~~v~ 485 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE-------------MLPEMIELAKFAKQHIPEEHELDDVDFIN 485 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC-------------CCCSCGGGTTTTCCSCCCSSCHHHHHHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh-------------hhHHHHHHHHHhhccCccccccccHHHHH
Confidence 56788999999987 88889999999999987543210 1111211111100 000111121
Q ss_pred ---hhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 012413 168 ---ESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALL 244 (464)
Q Consensus 168 ---~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~ 244 (464)
..+.. .++|+.|+.+|+++++.+|+.|+++|.+++.+ +++|..+++.|++|+|+.+|++.++..++.|+++|.
T Consensus 486 ~r~~~Vve---aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~ 561 (810)
T 3now_A 486 KRITVLAN---EGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALA 561 (810)
T ss_dssp HHHHHHHH---TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHH
Confidence 22222 26899999999999999999999999999976 779999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHH---hcCcHHHHHHHHccC-CHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHH
Q 012413 245 NLSLHENNKTLIT---NAGAIKSLVYVLKTG-TETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKK 319 (464)
Q Consensus 245 ~La~~~~~~~~i~---~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~ 319 (464)
+|+.+.+....+. ..|++|+|+.+|..+ +...+..|+++|.||+.+ ++++..+++.|+++.|+.+|.++++.+++
T Consensus 562 nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~ 641 (810)
T 3now_A 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTR 641 (810)
T ss_dssp HHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHH
T ss_pred HHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHH
Confidence 9987544433221 246999999999876 445567999999999998 47888999999999999999999999999
Q ss_pred HHHHHHHHHhcCcchHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHh-cCcHHHHHHHHhcCC
Q 012413 320 DALTTLYKLCSLKQNKERAVS-AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVE-ENGIAALVEAIEDGS 396 (464)
Q Consensus 320 ~A~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~-~g~i~~Lv~lL~~~~ 396 (464)
.|+++|+||+.+++.+..+++ .|+++.|+.++.+.+..++..|+++|+||+. ++...+.+++ .|+++.|++++.+++
T Consensus 642 ~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d 721 (810)
T 3now_A 642 AAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS 721 (810)
T ss_dssp HHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSS
T ss_pred HHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCC
Confidence 999999999999999988886 7899999999999999999999999999996 7888899998 899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC---CHHHHHHHHHHHHHhhcCCC
Q 012413 397 VKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG---SVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 397 ~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~---~~~v~~~A~~aL~~L~~~~~ 457 (464)
.+++..|+|+|+||+..+++....+.+.|++++|+++++.. ++++.+.|..+|.++.+++-
T Consensus 722 ~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 722 PAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999998888899999999999999999765 68999999999999987543
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=290.46 Aligned_cols=278 Identities=20% Similarity=0.215 Sum_probs=243.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLI 256 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i 256 (464)
.++.++..|++++++++..|+++|++++.+++..+..+.+.|+||.|+.+|+++++.++..|+++|.||+.+ ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 467789999999999999999999999998888888999999999999999999999999999999999986 8999999
Q ss_pred HhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhh--------cC--------ChhhHH
Q 012413 257 TNAGAIKSLVYVLK-TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLI--------YG--------SSRGKK 319 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~--------~~--------~~~v~~ 319 (464)
++.|+||.|+++|+ +++++++..++|+|+||+.++++|..+++ |++|+|+++|. ++ +..+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999889999999 99999999993 22 456777
Q ss_pred HHHHHHHHHhcCcchHHHHHHc-CCHHHHHHhhcC------CCHHHHHHHHHHHHHHhCCH-------------------
Q 012413 320 DALTTLYKLCSLKQNKERAVSA-GAVRPLVGMLAG------QGEGMAEKAMVVLSLLAGIA------------------- 373 (464)
Q Consensus 320 ~A~~aL~nL~~~~~~~~~iv~~-g~v~~Lv~lL~~------~~~~v~~~A~~aL~nLa~~~------------------- 373 (464)
.|+++|+||+.+++++..+++. |+++.|+.+|.+ .+..+.++++++|.||+...
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999998899999997 999999999985 45567889999999997321
Q ss_pred --------------------------------hhHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcCHH----
Q 012413 374 --------------------------------EGREAIVEENGIAALVEAIED-GSVKGKEFAVLTLLQLCAESVK---- 416 (464)
Q Consensus 374 --------------------------------~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~~~~---- 416 (464)
.+.+.+.+.|+++.|+.+|.+ .++.+++.|+|+|+||+..+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 122334556789999999985 4699999999999999976422
Q ss_pred h-HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 417 N-RGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 417 ~-~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
. +..+.+.|+++.|+++|.++++++++.|+|+|++++.+.
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 2 344557899999999999999999999999999998754
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-31 Score=279.09 Aligned_cols=350 Identities=19% Similarity=0.203 Sum_probs=297.6
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCC--chhhhhcCcccCcccccCCCchhhhhhhcccCc------hhhH
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPS--PENILRQPNENNCQAELEPEPEPCLGFLQRENF------STEI 166 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~--~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~------s~~i 166 (464)
.++.++.|.+.|.+ ++.++..+..+|.++++... ....+...+ .+|.+ +.+|...+. ...+
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g-------~v~~L---v~lL~~~~~~~v~~~A~~~ 141 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSG-------VVPRF---VQFLTREDFPQLQFEAAWA 141 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTT-------CHHHH---HHHHTCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCC-------CHHHH---HHHhCCCCCHHHHHHHHHH
Confidence 56779999999987 88899999999999977643 444555444 55555 777765441 0111
Q ss_pred hhhcCCCCc--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh-cCCCHHHHH
Q 012413 167 IESISPEDL--------QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL-KCSDPWTQE 237 (464)
Q Consensus 167 ~~~~~~~~~--------~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL-~~~~~~v~~ 237 (464)
+..+..+.. .+.++.|+..|.++++.++..|+++|++++.+++.++..+.+.|+++.|+.+| .+.++.++.
T Consensus 142 L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~ 221 (528)
T 4b8j_A 142 LTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 221 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHH
T ss_pred HHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHH
Confidence 122221110 15889999999999999999999999999999899999999999999999999 668999999
Q ss_pred HHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc-hhhhhccCChHHHHHHhhcCChh
Q 012413 238 HSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN-KSSIGACGAIPPLVSLLIYGSSR 316 (464)
Q Consensus 238 ~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~-~~~i~~~g~i~~Li~lL~~~~~~ 316 (464)
.|+++|.+|+.+..........|++|.|+.+|.++++.++..++++|.+|+..... ...+.+.|+++.|+.+|.++++.
T Consensus 222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~ 301 (528)
T 4b8j_A 222 NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 301 (528)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChh
Confidence 99999999998754444555689999999999999999999999999999987544 46778899999999999999999
Q ss_pred hHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHh
Q 012413 317 GKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIE 393 (464)
Q Consensus 317 v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~ 393 (464)
++..|+++|++|+. .+.....+++.|+++.|+.+|.++ +..++..|+++|+||+ ..+.....+++.|+++.|+++|.
T Consensus 302 v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~ 381 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 381 (528)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh
Confidence 99999999999999 456777888999999999999988 8999999999999999 46777888999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 394 DGSVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 394 ~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+.+..++..|+++|++|+.. ++.....+.+.|++++|+.+|.++++.++..|.++|.+|.+.
T Consensus 382 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (528)
T 4b8j_A 382 TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKV 444 (528)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 678888899999999999999999999999999999999764
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=282.77 Aligned_cols=280 Identities=19% Similarity=0.214 Sum_probs=254.8
Q ss_pred hHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchH
Q 012413 176 QPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~ 253 (464)
.++|+.|+++|++ +++.+|..|+++|.+++.++++.+..+++.|+||.|+.+|+++++++++.|+++|+||+.+ ++.+
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 3689999999975 5689999999999999999999999999999999999999999999999999999999986 6788
Q ss_pred HHHHhcCcHHHHHHHHccCC-----HHHHHHHHHHHHHhcccccchhh-hhccCChHHHHHHhhcCChhhHHHHHHHHHH
Q 012413 254 TLITNAGAIKSLVYVLKTGT-----ETSKQNAACALMSLALIEENKSS-IGACGAIPPLVSLLIYGSSRGKKDALTTLYK 327 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~-----~~v~~~a~~aL~~Ls~~~~~~~~-i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~n 327 (464)
..+.+.|++++|+.+|...+ ..++..++|+|.+++.+...... ....|++|.|+.+|.+++..++..|+++|++
T Consensus 179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258 (510)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999998754 46788999999999987644333 3347889999999999999999999999999
Q ss_pred HhcCcc-hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHH
Q 012413 328 LCSLKQ-NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVL 405 (464)
Q Consensus 328 L~~~~~-~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 405 (464)
|+..+. ....+++.|+++.|+.+|.+.+..++..++.+|+||+ ..+..+..+++.|+++.|+.++.++++.++..|+|
T Consensus 259 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~ 338 (510)
T 3ul1_B 259 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338 (510)
T ss_dssp HTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHH
T ss_pred HhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHH
Confidence 999664 5566778999999999999999999999999999998 56778889999999999999999999999999999
Q ss_pred HHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 406 TLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 406 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+|+||+..++..+..+.+.|+++.|+.++.+++.++|..|+|+|.+++..
T Consensus 339 aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999864
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=282.59 Aligned_cols=323 Identities=21% Similarity=0.235 Sum_probs=270.0
Q ss_pred cCCcchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCC-chhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhh
Q 012413 92 KSTISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPS-PENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIES 169 (464)
Q Consensus 92 ~~~~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~-~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~ 169 (464)
.....+..+++|.++|.+ ++.++.+++.+|..++.... ....+. +
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~--------------------------------~- 88 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVR--------------------------------K- 88 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH--------------------------------H-
T ss_pred CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHH--------------------------------H-
Confidence 556788899999999998 88899999999998864221 211111 1
Q ss_pred cCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-CchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 012413 170 ISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKN-RSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 170 ~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~-~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La 247 (464)
.+.|+.||.+|+++++++++.|+++|++|+.+ +++++..|.+.|+||+|+.+|++ .+.++++.|+++|.+|+
T Consensus 89 ------~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS 162 (584)
T 3l6x_A 89 ------LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLS 162 (584)
T ss_dssp ------TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHT
T ss_pred ------cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 36889999999999999999999999999985 68999999999999999999997 68899999999999999
Q ss_pred CCCchHHHHHhcCcHHHHHHHHc------------------cCCHHHHHHHHHHHHHhcccc-cchhhhhcc-CChHHHH
Q 012413 248 LHENNKTLITNAGAIKSLVYVLK------------------TGTETSKQNAACALMSLALIE-ENKSSIGAC-GAIPPLV 307 (464)
Q Consensus 248 ~~~~~~~~i~~~g~i~~Lv~lL~------------------~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~-g~i~~Li 307 (464)
.+++++..|++ +++|.|+.+|. ..++.++.+|+++|.||+.+. ++|..+++. |+++.|+
T Consensus 163 ~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV 241 (584)
T 3l6x_A 163 SHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALI 241 (584)
T ss_dssp TSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHH
T ss_pred CCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHH
Confidence 99999999996 57999999872 236799999999999999875 457777764 3345666
Q ss_pred HHhhc--------------------------------------------------------------------------C
Q 012413 308 SLLIY--------------------------------------------------------------------------G 313 (464)
Q Consensus 308 ~lL~~--------------------------------------------------------------------------~ 313 (464)
.+|.+ .
T Consensus 242 ~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~ 321 (584)
T 3l6x_A 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK 321 (584)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCC
T ss_pred HHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCC
Confidence 55432 2
Q ss_pred ChhhHHHHHHHHHHHhcCc-----chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHH
Q 012413 314 SSRGKKDALTTLYKLCSLK-----QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAAL 388 (464)
Q Consensus 314 ~~~v~~~A~~aL~nL~~~~-----~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L 388 (464)
++.++++|+++|+|||... .++..+.++|++|.|+.+|.+.+..++..|+++|+||+..+.++..| ..|+++.|
T Consensus 322 ~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~L 400 (584)
T 3l6x_A 322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNL 400 (584)
T ss_dssp CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHH
Confidence 3455667778888887643 22334445789999999999999999999999999999888887766 78999999
Q ss_pred HHHHhcC--------CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHHhhcC
Q 012413 389 VEAIEDG--------SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG--SVRAKHKAETLLGYLREP 455 (464)
Q Consensus 389 v~lL~~~--------~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~~L~~~ 455 (464)
+++|.++ +..+...|+++|+||+..++.++..+.+.|+|++|+.+++++ .+.+++.|+++|.++..+
T Consensus 401 V~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 9999976 468899999999999999999999999999999999999986 889999999999999865
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=284.52 Aligned_cols=281 Identities=20% Similarity=0.204 Sum_probs=243.6
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC--CchH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH--ENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~--~~~~ 253 (464)
.+.|+.||.+|.+++++++..|+++|.+++.+++.++..+.+.|+||+|+.+|+++++++++.|+++|.||+.+ ++++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 46788899999999999999999999999998899999999999999999999999999999999999999984 7999
Q ss_pred HHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhh------------------cCC
Q 012413 254 TLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLI------------------YGS 314 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~------------------~~~ 314 (464)
..|++.|+||.|+.+|++ .+.+++.+++++|++|+.++++|..|++ +++|+|++++. ..+
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 999999999999999997 5889999999999999999999999995 57999999872 125
Q ss_pred hhhHHHHHHHHHHHhcCc-chHHHHHHc-CCHHHHHHhhcC------CCHHHHHHHHHHHHHHhCCHh------------
Q 012413 315 SRGKKDALTTLYKLCSLK-QNKERAVSA-GAVRPLVGMLAG------QGEGMAEKAMVVLSLLAGIAE------------ 374 (464)
Q Consensus 315 ~~v~~~A~~aL~nL~~~~-~~~~~iv~~-g~v~~Lv~lL~~------~~~~v~~~A~~aL~nLa~~~~------------ 374 (464)
..++++|+++|.||+.+. +++..+++. |+++.|+.+|++ .+...+++|+++|.||+..-.
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 789999999999999965 568889884 556899999974 456789999999999995421
Q ss_pred --------------hHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcC----HHhHHHHHHcCChHHHHHhhh
Q 012413 375 --------------GREAIVEENGIAALVEAIE-DGSVKGKEFAVLTLLQLCAES----VKNRGLLVREGGIPPLVALSQ 435 (464)
Q Consensus 375 --------------~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~----~~~~~~i~~~g~i~~Lv~lL~ 435 (464)
+.+.+...++++.|+.+|+ +.++.+++.|+++|+|||... ...+..+.++|+++.|+++|.
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~ 365 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT 365 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence 1112223356778899997 468999999999999998754 234556777899999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCC
Q 012413 436 TGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 436 s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
++++.+++.|+|+|++|+.+..
T Consensus 366 s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHHhCChh
Confidence 9999999999999999998653
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-31 Score=279.76 Aligned_cols=280 Identities=19% Similarity=0.209 Sum_probs=255.9
Q ss_pred hHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchH
Q 012413 176 QPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~ 253 (464)
.+.|+.|+.+|+. .++.++..|+++|.+++.+++.....+++.|+||.|+.+|.++++++++.|+++|+||+.+ ++.+
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 3688999999974 5699999999999999999999999999999999999999999999999999999999985 6889
Q ss_pred HHHHhcCcHHHHHHHHccCC-----HHHHHHHHHHHHHhcccccchh-hhhccCChHHHHHHhhcCChhhHHHHHHHHHH
Q 012413 254 TLITNAGAIKSLVYVLKTGT-----ETSKQNAACALMSLALIEENKS-SIGACGAIPPLVSLLIYGSSRGKKDALTTLYK 327 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~-----~~v~~~a~~aL~~Ls~~~~~~~-~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~n 327 (464)
..+.+.|++++|+.+|..++ ..++..++|+|.+++.+..... .....|++|.|+.+|.++++.++..|+++|.+
T Consensus 198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~ 277 (529)
T 3tpo_A 198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 277 (529)
T ss_dssp HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999998654 4678899999999998854433 33447889999999999999999999999999
Q ss_pred HhcCc-chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHH
Q 012413 328 LCSLK-QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVL 405 (464)
Q Consensus 328 L~~~~-~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 405 (464)
|+.++ +....+++.|+++.|+.+|.+++..++..++.+|+||+ ..+..+..+++.|+++.|+.++.++++.++..|+|
T Consensus 278 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 278 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence 99966 45566778999999999999999999999999999998 56778889999999999999999999999999999
Q ss_pred HHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 406 TLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 406 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+|+||+..++..+..+.+.|++++|+.++.+++.+++..|+|+|.+++..
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999854
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-30 Score=273.17 Aligned_cols=324 Identities=15% Similarity=0.163 Sum_probs=284.7
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCC
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~ 174 (464)
-.+.+++|.+.|.+ ++.+|..+...|+++++.... |.+ ..+..
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~-----------------~~~-------------~~~~~------ 128 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHR-----------------PPI-------------DVVIQ------ 128 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSS-----------------CSH-------------HHHHH------
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCC-----------------ccH-------------HHHHH------
Confidence 33558889998887 888899999999998543211 000 01111
Q ss_pred chHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-Cch
Q 012413 175 LQPTVKICIDGLQSS-SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENN 252 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~-~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~ 252 (464)
.+.++.|+..|.++ ++.++..|+++|.+++.+++..+..+.+.|+++.|+.+|+++++.++..|+++|++|+.+ ++.
T Consensus 129 -~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 129 -AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp -TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred -CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 25677889999987 899999999999999999888889999999999999999999999999999999999986 578
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC
Q 012413 253 KTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL 331 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~ 331 (464)
+..+...|+++.|+.+|.+.+..++..++|+|.+|+.+. .........++++.|+.+|.++++.++..|+++|.+|+..
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 888899999999999999999999999999999999875 4555566689999999999999999999999999999985
Q ss_pred -cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012413 332 -KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 332 -~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 409 (464)
++....+++.|+++.|+.+|.+.+..++..|+++|++|+ ..+.....+++.|+++.|+.+|.+++..++..|+++|++
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 467788889999999999999999999999999999999 557778888899999999999999999999999999999
Q ss_pred HhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 410 LCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 410 L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
|+..++.....+.+.|+++.|+.+|.++++.++..|+|+|.+++...
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 414 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 99988888888889999999999999999999999999999998753
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-30 Score=267.43 Aligned_cols=345 Identities=17% Similarity=0.184 Sum_probs=289.5
Q ss_pred HHHHHhhhhh-cccchhhhHHHHHHhhcC--CCchhhhhcC-cccCcccccCCCchhhhhhhccc-Cc-----hhhHhhh
Q 012413 100 YLNVSQAFSD-FSVCSSDISGELQRLASL--PSPENILRQP-NENNCQAELEPEPEPCLGFLQRE-NF-----STEIIES 169 (464)
Q Consensus 100 ~~~L~~ll~~-~~~~r~~a~~~l~~la~~--~~~~~~~~~~-~~~~~~e~~~p~l~~lv~~L~~~-~~-----s~~i~~~ 169 (464)
++.|.+.+.+ ++.+|..+...|+++++. ..+....... + .+|.+ +..|+.. +. ...++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~-------~i~~L---~~~L~~~~~~~v~~~a~~~L~~ 91 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPG-------VVARF---VEFLKRKENCTLQFESAWVLTN 91 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTT-------HHHHH---HHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCC-------cHHHH---HHHHCCCCCHHHHHHHHHHHHH
Confidence 7888998887 888999999999998652 2233333322 2 34444 6777655 21 1112221
Q ss_pred cCCCC--------chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHH
Q 012413 170 ISPED--------LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSV 240 (464)
Q Consensus 170 ~~~~~--------~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~ 240 (464)
+.... ..+.++.|+..|+++++.+|..|+++|.+++.+.+..+..+.+.|+++.|+.+|++ .++.++..|+
T Consensus 92 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 92 IASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 21111 03588999999999999999999999999999988899999999999999999996 7899999999
Q ss_pred HHHHHhcCCC--chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhh
Q 012413 241 TALLNLSLHE--NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRG 317 (464)
Q Consensus 241 ~aL~~La~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v 317 (464)
++|++++.+. ..+..+. .+++|.|+.+|.++++.++..++|+|.+|+.+ ++.+..+.+.|+++.|+.+|.++++.+
T Consensus 172 ~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 250 (450)
T 2jdq_A 172 WALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKV 250 (450)
T ss_dssp HHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHH
T ss_pred HHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhH
Confidence 9999999753 3333333 78999999999999999999999999999987 466777888999999999999999999
Q ss_pred HHHHHHHHHHHhcCc-chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcC
Q 012413 318 KKDALTTLYKLCSLK-QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDG 395 (464)
Q Consensus 318 ~~~A~~aL~nL~~~~-~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~ 395 (464)
+..|+++|++|+... ...+.+++.|+++.|+.+|.+++..++..|+++|++|+ +.+...+.+++.|+++.|++++.++
T Consensus 251 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~ 330 (450)
T 2jdq_A 251 VSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA 330 (450)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC
Confidence 999999999999965 45566788999999999999999999999999999999 5777888899999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 396 SVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 396 ~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
++.+|..|+++|++|+.. ++.....+.+.|+++.|+.++.+++++++..|.++|.++...
T Consensus 331 ~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 331 EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999976 667777788999999999999999999999999999999864
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=272.51 Aligned_cols=266 Identities=18% Similarity=0.177 Sum_probs=233.8
Q ss_pred CCHHHHHHHHHHHHHHhccCchhHHHHHhcCCh----------HHHHHhhcCCC--HH-----HHH-------HHHHHHH
Q 012413 189 SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAV----------PALVPLLKCSD--PW-----TQE-------HSVTALL 244 (464)
Q Consensus 189 ~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i----------~~Ll~lL~~~~--~~-----v~~-------~A~~aL~ 244 (464)
.+++++.+|+++|.+|+...++......+.|++ +.+++++.+.. .+ +++ .|+|+|+
T Consensus 94 ~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~ 173 (458)
T 3nmz_A 94 GSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLM 173 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHH
Confidence 457999999999999999999888888888888 66677777642 12 444 9999999
Q ss_pred HhcCCCchHHHHHhcCcHHHHHHHHcc-----------CCHHHHHHHHHHHHHhccccc-chhhhhc-cCChHHHHHHhh
Q 012413 245 NLSLHENNKTLITNAGAIKSLVYVLKT-----------GTETSKQNAACALMSLALIEE-NKSSIGA-CGAIPPLVSLLI 311 (464)
Q Consensus 245 ~La~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~-~g~i~~Li~lL~ 311 (464)
|++.++++|+.|.+.|++++|+.+|.. .++.++.+|+|+|.||+.+.+ ++..+.. .|+||.|+.+|.
T Consensus 174 nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~ 253 (458)
T 3nmz_A 174 KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK 253 (458)
T ss_dssp HHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG
T ss_pred HhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh
Confidence 999999999999999999999999952 346799999999999998864 6767754 566999999999
Q ss_pred cCChhhHHHHHHHHHHHhcC--cchHHHHHHcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhC-CHhhHHHHH-hcCcHH
Q 012413 312 YGSSRGKKDALTTLYKLCSL--KQNKERAVSAGAVRPLVGML-AGQGEGMAEKAMVVLSLLAG-IAEGREAIV-EENGIA 386 (464)
Q Consensus 312 ~~~~~v~~~A~~aL~nL~~~--~~~~~~iv~~g~v~~Lv~lL-~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~-~~g~i~ 386 (464)
++++.++..|+++|+||+.. ++++..+++.|++|.|+.+| .+.+..+++.|+.+|+||+. .++++..|. ..|+++
T Consensus 254 s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~ 333 (458)
T 3nmz_A 254 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 333 (458)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHH
Confidence 99999999999999999984 57889999999999999975 55678899999999999997 788888888 799999
Q ss_pred HHHHHHhcCCH----HHHHHHHHHHHHHhh---cCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 387 ALVEAIEDGSV----KGKEFAVLTLLQLCA---ESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 387 ~Lv~lL~~~~~----~v~~~A~~aL~~L~~---~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.|+++|.+.++ .++..|+++|+||+. .+++++..+.+.|++++|+.+|++++..+++.|+|+|++|+.
T Consensus 334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 99999997654 599999999999997 688999999999999999999999999999999999999984
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=267.49 Aligned_cols=279 Identities=22% Similarity=0.206 Sum_probs=257.9
Q ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHH
Q 012413 177 PTVKICIDGLQSSS-VAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKT 254 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~-~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~ 254 (464)
+.++.|+..|.+++ +.++..|+++|.+++.+++..+..+.+.|+++.|+.+|.++++.++..|+++|++|+.+ +..+.
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 196 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD 196 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 57888899999887 99999999999999999899999999999999999999999999999999999999986 57788
Q ss_pred HHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 255 LITNAGAIKSLVYVL-KTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
.+.+.|+++.|+.+| .+.+..++..++|+|.+|+............|+++.|+.+|.++++.++..|+++|++|+...+
T Consensus 197 ~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 276 (528)
T 4b8j_A 197 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN 276 (528)
T ss_dssp HHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999 6779999999999999999885444555568999999999999999999999999999998664
Q ss_pred -hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 012413 334 -NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDG-SVKGKEFAVLTLLQL 410 (464)
Q Consensus 334 -~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~L 410 (464)
..+.+++.|+++.|+.+|.+++..++..|+++|++|+. .+.....+++.|+++.|+.+|.++ ++.++..|+++|++|
T Consensus 277 ~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 277 DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 44677889999999999999999999999999999995 677888899999999999999998 999999999999999
Q ss_pred hhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 411 CAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 411 ~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+..++.....+.+.|+++.|+.+|.++++.++..|+|+|.+++..
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 998888888899999999999999999999999999999999875
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=239.40 Aligned_cols=243 Identities=24% Similarity=0.289 Sum_probs=229.2
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhh
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSS 296 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~ 296 (464)
|+++.|+.+|++++++++..|+++|.+++... +++..+.+.|+++.|+.+|++++..++..++++|.+|+.+ ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67999999999999999999999999999865 5899999999999999999999999999999999999998 788999
Q ss_pred hhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHh
Q 012413 297 IGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAE 374 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~ 374 (464)
+.+.|+++.|+.+|.++++.++..|+++|++|+. .++++..+++.|+++.|+.++.++++.++..++++|++|+. .+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999995 77899999999999999999999999999999999999995 667
Q ss_pred hHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 375 GREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.+..+.+.|+++.|++++.++++.++..|+++|++|+..++..+..+.+.|+++.|+++++++++++++.|.++|++|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 77899999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred CCCCCCC
Q 012413 455 PRQEGPS 461 (464)
Q Consensus 455 ~~~~~~~ 461 (464)
..++...
T Consensus 242 ~~~~~~~ 248 (252)
T 4hxt_A 242 GGWLEHH 248 (252)
T ss_dssp TCBCCC-
T ss_pred CCCcccc
Confidence 8776543
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=260.41 Aligned_cols=268 Identities=22% Similarity=0.215 Sum_probs=231.7
Q ss_pred cCCCchhhhhhhcccCchhhHhhhcCCCCchHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHHhccCchhHHH
Q 012413 146 LEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQ-----------SSSVAIKRSAAAKLRLLAKNRSDNRVL 214 (464)
Q Consensus 146 ~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~~~v~~Lv~~L~-----------s~~~~vr~~A~~~L~~La~~~~~~r~~ 214 (464)
..|+...-+..|....++++.+..+.+. +.++.|+..|. ..++.++..|+++|.+++.+++.++..
T Consensus 45 ~~~~~~~A~~aL~nls~d~e~R~~i~~~---G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFDEEHRHAMNEL---GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp GGGTHHHHHHHHHHHHTSHHHHHHHHHT---THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHc---CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455544556666666667777776654 45555566663 134789999999999999998888888
Q ss_pred HHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC--CchHHHHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhcc-
Q 012413 215 IGE-SGAVPALVPLLKCSDPWTQEHSVTALLNLSLH--ENNKTLITNAGAIKSLVYVL-KTGTETSKQNAACALMSLAL- 289 (464)
Q Consensus 215 i~~-~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~- 289 (464)
+.. .|+||.|+.+|+++++++++.|+++|.||+.. +++|..+.+.|+||.|+++| ++++..+++.|+++|++|+.
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 764 56699999999999999999999999999985 57899999999999999975 66789999999999999999
Q ss_pred cccchhhhh-ccCChHHHHHHhhcCCh----hhHHHHHHHHHHHhc----CcchHHHHHHcCCHHHHHHhhcCCCHHHHH
Q 012413 290 IEENKSSIG-ACGAIPPLVSLLIYGSS----RGKKDALTTLYKLCS----LKQNKERAVSAGAVRPLVGMLAGQGEGMAE 360 (464)
Q Consensus 290 ~~~~~~~i~-~~g~i~~Li~lL~~~~~----~v~~~A~~aL~nL~~----~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~ 360 (464)
.++++..++ ..|++|.|+++|.+++. .+++.|+++|+||+. .+++++.+++.|+++.|+.+|.+.+..+++
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 467888888 79999999999998754 489999999999996 788999999999999999999999999999
Q ss_pred HHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 361 KAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 361 ~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
+|+++|+||+ .+++++..+++.|+++.|++++.++++.++..|+++|.+|+...+.
T Consensus 282 ~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999 6799999999999999999999999999999999999999987654
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-29 Score=263.64 Aligned_cols=279 Identities=20% Similarity=0.193 Sum_probs=253.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-chHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-~~~~~ 255 (464)
+.++.|+..|+++++.++..|+++|.+++.+++..+..+...|+++.|+.+|.+.++.++..|+++|.+|+.+. +....
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 252 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcH
Confidence 46777788888899999999999999999998899999999999999999999999999999999999999864 44455
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cc
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQ 333 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~ 333 (464)
....|++|.|+.+|.++++.++..++++|.+|+.. ++....+.+.|+++.|+.+|.+++..++..|+++|++|+.. +.
T Consensus 253 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~ 332 (530)
T 1wa5_B 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL 332 (530)
T ss_dssp HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHH
Confidence 66789999999999999999999999999999977 45677788899999999999999999999999999999985 56
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
....+++.|+++.|+.+|.+++..++..|+++|++|+ ..+.....+++.|+++.|+.+|.++++.++..|+++|++|+.
T Consensus 333 ~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 333 QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 412 (530)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 6677888999999999999999999999999999999 467777888899999999999999999999999999999997
Q ss_pred cC-H--HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 413 ES-V--KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 413 ~~-~--~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.. + .....+.+.|+++.|+.++.+.++.++..|.++|.++...
T Consensus 413 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 413 GGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 53 3 5677788999999999999999999999999999999764
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-28 Score=250.71 Aligned_cols=278 Identities=18% Similarity=0.170 Sum_probs=253.7
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHH
Q 012413 177 PTVKICIDGLQSS-SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKT 254 (464)
Q Consensus 177 ~~v~~Lv~~L~s~-~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~ 254 (464)
+.++.|+..|+++ ++.+|..|+++|.+++.++++....+.+.|+++.|+.+|+++++.++..|+++|++++.+ ++.+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6888899999988 899999999999999998788888888899999999999999999999999999999986 47888
Q ss_pred HHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccc--cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC
Q 012413 255 LITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIE--ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL 331 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~ 331 (464)
.+.+.|+++.|+.+|++ .+..++..++++|.+|+.+. ..+..+. .+++|.|+.++.++++.++..++++|.+|+..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88999999999999996 78999999999999999763 3333333 78999999999999999999999999999995
Q ss_pred -cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012413 332 -KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 332 -~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 409 (464)
++....+++.|+++.|+.+|.+++..++..|+++|++|+. .+...+.+.+.|+++.|++++.++++.++..|+++|++
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4677788899999999999999999999999999999995 46667778889999999999999999999999999999
Q ss_pred HhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 410 LCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 410 L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
|+..++.....+.+.|+++.|+.++.++++++|..|+|+|.+++..
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9988888888899999999999999999999999999999999864
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=233.21 Aligned_cols=238 Identities=25% Similarity=0.292 Sum_probs=224.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~ 255 (464)
+.++.|+..|++++++++..|+++|.+++.+.+..+..+.+.|+++.|+.+|++++++++..|+++|.+++.+ ++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3578889999999999999999999999999888999999999999999999999999999999999999997 789999
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcc-cccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cc
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLAL-IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQ 333 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~ 333 (464)
+.+.|+++.|+.+|+++++.++..|+++|.+|+. .++.+..+.+.|+++.|+++|.++++.++..++++|++|+.. +.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999995 578899999999999999999999999999999999999995 55
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
.+..+++.|+++.|+.++.++++.++..|+++|++|+. .+..+..+.+.|+++.|++++.++++.++..|+++|++|+.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 66888999999999999999999999999999999995 77888899999999999999999999999999999999997
Q ss_pred cC
Q 012413 413 ES 414 (464)
Q Consensus 413 ~~ 414 (464)
..
T Consensus 242 ~~ 243 (252)
T 4hxt_A 242 GG 243 (252)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=259.30 Aligned_cols=321 Identities=22% Similarity=0.214 Sum_probs=278.9
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCC
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~ 174 (464)
....+++|..++.+ ++.+|..++..|+.++...+....+. .
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~--------------------------------------~ 56 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM--------------------------------------R 56 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHH--------------------------------------T
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHH--------------------------------------h
Confidence 55679999999987 89999999999999864332211111 1
Q ss_pred chHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-Cch
Q 012413 175 LQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENN 252 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~ 252 (464)
..+.++.|++.|.+ ++++++..|+.+|.+++.+ ++++..+.+.|+++.|+.+|+++++.++..|+++|.+++.+ ++.
T Consensus 57 ~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch
Confidence 14677888888865 5899999999999999988 66889999999999999999999999999999999999986 577
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCCh-hhHHHHHHHHHHHhc
Q 012413 253 KTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSS-RGKKDALTTLYKLCS 330 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~-~v~~~A~~aL~nL~~ 330 (464)
+..+.+.|++|.|+.+|++++..++..++.+|.+++.. ++++..+.+.|+++.|+.+|.+.+. ..+..++.+|++|+.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999985 6889999999999999999998754 466678999999999
Q ss_pred CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 012413 331 LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQL 410 (464)
Q Consensus 331 ~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L 410 (464)
+++++..+++.|+++.|+.++.+++..++..++++|.+|+....... ...|+++.|++++.++++.++..|+++|++|
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 293 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996543221 1247899999999999999999999999999
Q ss_pred hhcCHHhHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHHhhcCCC
Q 012413 411 CAESVKNRGLLVREGGIPPLVALSQTG--SVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 411 ~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~~L~~~~~ 457 (464)
+..+++.+..+.+.|+++.|+.++.+. ++.++..|.++|++|+...+
T Consensus 294 ~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~ 342 (529)
T 1jdh_A 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342 (529)
T ss_dssp TTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred hcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCc
Confidence 998888999999999999999999863 47999999999999986543
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-29 Score=235.82 Aligned_cols=238 Identities=22% Similarity=0.282 Sum_probs=222.5
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchh
Q 012413 218 SGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKS 295 (464)
Q Consensus 218 ~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~ 295 (464)
....+.++.+|++++++++..|+++|.++.. +++++..+.+.|++|.|+.+|+++++.++..|+++|.+|+.+ ++++.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4568999999999999999999999977554 567888999999999999999999999999999999999984 78899
Q ss_pred hhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH-HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CH
Q 012413 296 SIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IA 373 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~-~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~ 373 (464)
.+.+.|+++.|+.+|.++++.++..|+++|++|+..++.+ ..+++.|+++.|+.+|.+++..++..|+++|++|+. .+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999999999999999999999999999988887 889999999999999999999999999999999995 67
Q ss_pred hhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 374 EGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 374 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
..+..+.+.|+++.|++++.++++.++..|+++|++|+..++..+..+.+.|+++.|+.+++++++++++.|+++|.+|+
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 78888999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cC
Q 012413 454 EP 455 (464)
Q Consensus 454 ~~ 455 (464)
.+
T Consensus 251 ~~ 252 (252)
T 4db8_A 251 SH 252 (252)
T ss_dssp --
T ss_pred cC
Confidence 53
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=265.45 Aligned_cols=348 Identities=18% Similarity=0.174 Sum_probs=291.5
Q ss_pred cchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCc-----------
Q 012413 95 ISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENF----------- 162 (464)
Q Consensus 95 ~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~----------- 162 (464)
+....+++|.+++.+ ++.+|..++..|+.++........+.... -.+ ..++..|.....
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~------~~i---~~Lv~~L~~~~~~~~~~~A~~~L 81 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP------QMV---SAIVRTMQNTNDVETARCTAGTL 81 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCH------HHH---HHHHHHHHSCCCHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhcc------ChH---HHHHHHHhcCCCHHHHHHHHHHH
Confidence 456679999999998 89999999999999998876544333210 022 333666654321
Q ss_pred -----hhhHhhhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 012413 163 -----STEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237 (464)
Q Consensus 163 -----s~~i~~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~ 237 (464)
..+....+.. .+.++.|+..|+++++.++..|+++|.+++.+.+..+..+.+.|+++.|+.+|++.+++++.
T Consensus 82 ~~Ls~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~ 158 (644)
T 2z6h_A 82 HNLSHHREGLLAIFK---SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 158 (644)
T ss_dssp HHHTTSHHHHHHHHT---TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHH
T ss_pred HHHhcChhhHHHHHH---cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHH
Confidence 1111111111 25889999999999999999999999999999888888888999999999999999999999
Q ss_pred HHHHHHHHhcC-CCchHHHHHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCCh
Q 012413 238 HSVTALLNLSL-HENNKTLITNAGAIKSLVYVLKTGT-ETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSS 315 (464)
Q Consensus 238 ~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~ 315 (464)
.++.+|.+++. +++++..+.+.|+++.|+.+|++.+ +.++..++.+|++|+.+++++..+++.|+++.|+.++.+.+.
T Consensus 159 ~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~ 238 (644)
T 2z6h_A 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 238 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCH
Confidence 99999999997 6789999999999999999998864 678899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhc
Q 012413 316 RGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIED 394 (464)
Q Consensus 316 ~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~ 394 (464)
.+++.++++|.+|+...... ....++++.|+.+|.+.+..++..|+++|++|+. .+.++..+.+.|+++.|++++.+
T Consensus 239 ~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 239 RLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence 99999999999999854322 1224789999999999999999999999999995 56889999999999999999986
Q ss_pred C--CHHHHHHHHHHHHHHhhcCH---HhHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHhhcCC
Q 012413 395 G--SVKGKEFAVLTLLQLCAESV---KNRGLLVREGGIPPLVALSQTGS-VRAKHKAETLLGYLREPR 456 (464)
Q Consensus 395 ~--~~~v~~~A~~aL~~L~~~~~---~~~~~i~~~g~i~~Lv~lL~s~~-~~v~~~A~~aL~~L~~~~ 456 (464)
. .+.++..|+++|++|+...+ ..+..+.+.|+++.|+++|.+++ +.+++.|+|+|++|+..+
T Consensus 317 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 317 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384 (644)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred cCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH
Confidence 3 37999999999999997543 35667889999999999999875 799999999999998643
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=235.56 Aligned_cols=236 Identities=25% Similarity=0.299 Sum_probs=219.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~ 255 (464)
...+.+++.|++++++++..|+++|.++...++..+..+.+.|+++.|+.+|++++++++..|+++|.+++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 456777899999999999999999977665567788889999999999999999999999999999999998 5789999
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccch-hhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-Ccc
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENK-SSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQ 333 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~-~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~ 333 (464)
+.+.|+++.|+.+|+++++.++..|+++|.+|+.+++.+ ..+.+.|+++.|+++|.+++..++..|+++|++|+. .++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999998877 888999999999999999999999999999999998 457
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
.+..+++.|+++.|+.+|.++++.++..|+++|++|+ ..+..+..+.+.|+++.|++++.++++.++..|+++|++|+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 7788889999999999999999999999999999999 677888999999999999999999999999999999999985
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=254.37 Aligned_cols=318 Identities=19% Similarity=0.174 Sum_probs=275.1
Q ss_pred hhHHHHHHhhhhh--cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCC
Q 012413 97 EDDYLNVSQAFSD--FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174 (464)
Q Consensus 97 e~~~~~L~~ll~~--~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~ 174 (464)
+..+++|.++|.+ ++.++..+..+|..++..+++... +.+
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~--------------------------------i~~------ 99 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA--------------------------------IFK------ 99 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH--------------------------------HHH------
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH--------------------------------HHH------
Confidence 4678888888864 567788888888887543221111 111
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNK 253 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~ 253 (464)
.+.++.|+..|+++++.++..|+++|.+++.+++..+..+.+.|+++.|+.+|++++++++..++.+|.+++.. ++++
T Consensus 100 -~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 100 -SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp -TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 25788889999999999999999999999999888888898999999999999999999999999999999984 7889
Q ss_pred HHHHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 254 TLITNAGAIKSLVYVLKTGT-ETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
..+.+.|+++.|+.+|++++ ...+..++.+|.+|+.+++++..+.+.|+++.|+.++.++++.+++.++++|.+|+...
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCC
Confidence 99999999999999998864 56777889999999999999999999999999999999999999999999999999865
Q ss_pred chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 012413 333 QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIED--GSVKGKEFAVLTLLQ 409 (464)
Q Consensus 333 ~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~ 409 (464)
.... ...|+++.|+.++.+.+++++..|+++|++|+. .++++..+.+.|+++.|++++.+ .++.++..|+++|++
T Consensus 259 ~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n 336 (529)
T 1jdh_A 259 TKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336 (529)
T ss_dssp TTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 4322 124789999999999999999999999999995 46799999999999999999986 348999999999999
Q ss_pred HhhcCHH---hHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHhhcC
Q 012413 410 LCAESVK---NRGLLVREGGIPPLVALSQTGS-VRAKHKAETLLGYLREP 455 (464)
Q Consensus 410 L~~~~~~---~~~~i~~~g~i~~Lv~lL~s~~-~~v~~~A~~aL~~L~~~ 455 (464)
|+..++. .+..+.+.|+++.|+.++++++ +.++..|+|+|++++..
T Consensus 337 l~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 9976433 5778999999999999999986 59999999999999864
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=260.94 Aligned_cols=345 Identities=19% Similarity=0.165 Sum_probs=285.3
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhc-CCCchhhhhcCcccCcccccCCCchhhhhhhcccCc-----------
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLAS-LPSPENILRQPNENNCQAELEPEPEPCLGFLQRENF----------- 162 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~-~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~----------- 162 (464)
....++.|.++|.+ ++.++..+..+|..++. .++....+...+ .+|.+ +..++..+.
T Consensus 138 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g-------~v~~L---v~lL~~~~~~~~~~~a~~~L 207 (644)
T 2z6h_A 138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-------GPQAL---VNIMRTYTYEKLLWTTSRVL 207 (644)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-------HHHHH---HHHHTTCCCHHHHHHHHHHH
T ss_pred HCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcC-------ChHHH---HHHHHcCChHHHHHHHHHHH
Confidence 46778999999988 77777778889999886 333444444333 33333 555544321
Q ss_pred -----hhhHhhhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 012413 163 -----STEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237 (464)
Q Consensus 163 -----s~~i~~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~ 237 (464)
+.+....+.. .+.++.|+..+.+.+..++..++++|.+++.+.+.. ....++++.|+.+|++.+++++.
T Consensus 208 ~nLs~~~~~~~~l~~---~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~ 281 (644)
T 2z6h_A 208 KVLSVCSSNKPAIVE---AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVT 281 (644)
T ss_dssp HHHTTCTTHHHHHHH---TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHhcCcccHHHHHH---CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHH
Confidence 1111111111 247888899999999999999999999999875432 12347899999999999999999
Q ss_pred HHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhccc-c---cchhhhhccCChHHHHHHh
Q 012413 238 HSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTG--TETSKQNAACALMSLALI-E---ENKSSIGACGAIPPLVSLL 310 (464)
Q Consensus 238 ~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~-~---~~~~~i~~~g~i~~Li~lL 310 (464)
.|+++|.+|+.+ ++++..+.+.|+++.|+.+|.+. .+.++..|+++|.+|+.. + ..+..+.+.|+++.|+++|
T Consensus 282 ~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL 361 (644)
T 2z6h_A 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 361 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHh
Confidence 999999999986 47889999999999999999874 379999999999999875 2 2455688899999999999
Q ss_pred hcCC-hhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCC----------------------CHHHHHHHHHHHH
Q 012413 311 IYGS-SRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQ----------------------GEGMAEKAMVVLS 367 (464)
Q Consensus 311 ~~~~-~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~----------------------~~~v~~~A~~aL~ 367 (464)
.+++ ..+++.|+++|+||+.+++++..+++.|+++.|+.+|.+. ..+++..++.+|+
T Consensus 362 ~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~ 441 (644)
T 2z6h_A 362 HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 441 (644)
T ss_dssp STTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHH
Confidence 9875 6899999999999999999999999999999999999763 2456778999999
Q ss_pred HHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHH
Q 012413 368 LLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAET 447 (464)
Q Consensus 368 nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~ 447 (464)
+|+..+.++..+.+.|+++.|++++.+.++.++..|+++|++|+.. +..+..+.+.|+++.|.+++++++++++..|++
T Consensus 442 ~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~ 520 (644)
T 2z6h_A 442 ILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 520 (644)
T ss_dssp HHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999864 778889999999999999999999999999999
Q ss_pred HHHHhhcCCC
Q 012413 448 LLGYLREPRQ 457 (464)
Q Consensus 448 aL~~L~~~~~ 457 (464)
+|.+|.+++.
T Consensus 521 aL~~l~~~~~ 530 (644)
T 2z6h_A 521 VLFRMSEDKP 530 (644)
T ss_dssp HHHHHTTTSC
T ss_pred HHHHHhccCc
Confidence 9999998763
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=261.49 Aligned_cols=345 Identities=19% Similarity=0.171 Sum_probs=282.6
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcC-CCchhhhhcCcccCcccccCCCchhhhhhhcccCchh---------
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASL-PSPENILRQPNENNCQAELEPEPEPCLGFLQRENFST--------- 164 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~-~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~--------- 164 (464)
....++.|.++|.+ ...++..+..+|..++.. ++....+...+ .+ +.++..++..+...
T Consensus 274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~-------~i---~~Lv~lL~~~~~~~~~~~a~~aL 343 (780)
T 2z6g_A 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-------GP---QALVNIMRTYTYEKLLWTTSRVL 343 (780)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTT-------HH---HHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC-------CH---HHHHHHHhcCCHHHHHHHHHHHH
Confidence 45678899999987 777788888888888753 22333333222 22 23355555432210
Q ss_pred -------hHhhhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 012413 165 -------EIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237 (464)
Q Consensus 165 -------~i~~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~ 237 (464)
+....+.. .+.++.|+..|.+.++.++..|+++|.+++...... ....++++.|+.+|++.+++++.
T Consensus 344 ~~Ls~~~~~~~~i~~---~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~ 417 (780)
T 2z6g_A 344 KVLSVCSSNKPAIVE---AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVT 417 (780)
T ss_dssp HHHHTSTTHHHHHHH---TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHH
T ss_pred HHhhcChHHHHHHHH---hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHH
Confidence 01111111 247788899999999999999999999999875432 12357899999999999999999
Q ss_pred HHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhcccc-c---chhhhhccCChHHHHHHh
Q 012413 238 HSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTG--TETSKQNAACALMSLALIE-E---NKSSIGACGAIPPLVSLL 310 (464)
Q Consensus 238 ~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~~-~---~~~~i~~~g~i~~Li~lL 310 (464)
.|+++|.+|+.+ ++.+..+.+.|+++.|+.+|.+. .+.++..|+++|++|+... + .+..+...|+++.|+++|
T Consensus 418 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL 497 (780)
T 2z6g_A 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLL 497 (780)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHh
Confidence 999999999986 47888999999999999999873 3589999999999998753 2 356788899999999999
Q ss_pred hcCCh-hhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCC----------------------HHHHHHHHHHHH
Q 012413 311 IYGSS-RGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQG----------------------EGMAEKAMVVLS 367 (464)
Q Consensus 311 ~~~~~-~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~----------------------~~v~~~A~~aL~ 367 (464)
.+++. .+++.|+++|+||+.+++++..+++.|+++.|+.+|.+.+ .+++..++.+|+
T Consensus 498 ~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~ 577 (780)
T 2z6g_A 498 HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALH 577 (780)
T ss_dssp STTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHH
Confidence 98875 9999999999999999999988999999999999997532 346778999999
Q ss_pred HHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHH
Q 012413 368 LLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAET 447 (464)
Q Consensus 368 nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~ 447 (464)
+|+..+.++..+.+.|+++.|++++.+.++.++..|+.+|++|+. .+..+..+.+.|+++.|+.++.++++.+|..|++
T Consensus 578 ~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~ 656 (780)
T 2z6g_A 578 ILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 656 (780)
T ss_dssp HHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 999989999999999999999999999999999999999999984 5778889999999999999999999999999999
Q ss_pred HHHHhhcCCC
Q 012413 448 LLGYLREPRQ 457 (464)
Q Consensus 448 aL~~L~~~~~ 457 (464)
+|.+|..+.+
T Consensus 657 aL~~l~~~~~ 666 (780)
T 2z6g_A 657 VLFRMSEDKP 666 (780)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHcCCh
Confidence 9999998765
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=256.12 Aligned_cols=278 Identities=24% Similarity=0.235 Sum_probs=248.9
Q ss_pred hHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchH
Q 012413 176 QPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~ 253 (464)
.+.++.|+..|++ .++.+|..|+.+|.+++.+ +.++..+.+.|+|+.|+.+|+++++.++..|+++|.+|+.+ ++.+
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 4688888999975 4899999999999999988 56688888999999999999999999999999999999986 5777
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChh-hHHHHHHHHHHHhcC
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSR-GKKDALTTLYKLCSL 331 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~-v~~~A~~aL~nL~~~ 331 (464)
..+.+.|+++.|+.+|++++..++..++.+|.+++.. ++++..+.+.|+++.|+.+|++.+.. .+..++.+|++|+..
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 7888999999999999999999999999999999974 78899999999999999999987554 556889999999999
Q ss_pred cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 332 KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 332 ~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
+.++..+++.|+++.|+.++.+.+..++..++++|.+|+...... ....++++.|++++++.++.++..|+++|++|+
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999643221 122568999999999999999999999999999
Q ss_pred hcCHHhHHHHHHcCChHHHHHhhhc-CC-HHHHHHHHHHHHHhhcCC
Q 012413 412 AESVKNRGLLVREGGIPPLVALSQT-GS-VRAKHKAETLLGYLREPR 456 (464)
Q Consensus 412 ~~~~~~~~~i~~~g~i~~Lv~lL~s-~~-~~v~~~A~~aL~~L~~~~ 456 (464)
..++..+..+.+.|+++.|+.+|.+ ++ +.++..|+++|++|+...
T Consensus 428 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~ 474 (780)
T 2z6g_A 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 474 (780)
T ss_dssp SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 9988899999999999999999987 33 499999999999998643
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=241.54 Aligned_cols=354 Identities=14% Similarity=0.106 Sum_probs=280.6
Q ss_pred cccCCcchhHHHHHHhhhhhcccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccC--------
Q 012413 90 SVKSTISEDDYLNVSQAFSDFSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQREN-------- 161 (464)
Q Consensus 90 ~~~~~~~e~~~~~L~~ll~~~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~-------- 161 (464)
.-+.-+.+..+++|.+++++ ..+|.-+.-.|-++...+..... + .....+.|+.+|...+
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~-~~ir~lAavvL~KL~~~~~~~~~-------s----i~~La~~~~~~L~~~~~~~~~~Av 355 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNV-EDVQIYSALVLVKTWSFTKLTCI-------N----LKQLSEIFINAISRRIVPKVEMSV 355 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-GGGHHHHHHHHHHHTGGGTCTTC-------C----HHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCCCcC-------c----HHHHHHHHHHHHhcCCccHHHHHH
Confidence 34556678888999999876 46788888899888765543211 1 1112233344554422
Q ss_pred -------chhhHhhhcCCCCchHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCch-----------------------
Q 012413 162 -------FSTEIIESISPEDLQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSD----------------------- 210 (464)
Q Consensus 162 -------~s~~i~~~~~~~~~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~----------------------- 210 (464)
...++.+.+... .+.++.|++.++. .+..+...++.+|.|++...+.
T Consensus 356 EgLaYLSl~~~VKe~L~~d--~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~ 433 (778)
T 3opb_A 356 EALAYLSLKASVKIMIRSN--ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAAD 433 (778)
T ss_dssp HHHHHHTTSSHHHHHHHHC--HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-----------------
T ss_pred HHHHHHhCCHHHHHHHHhC--HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccC
Confidence 233445544444 6789999999995 7778899999999999974331
Q ss_pred ---------------hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHH
Q 012413 211 ---------------NRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTET 275 (464)
Q Consensus 211 ---------------~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 275 (464)
++..+.+.|++|.|+.++.+.++.+++.|+++|.+|+.++++|..+++.|++++|+.+|.++...
T Consensus 434 ~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~ 513 (778)
T 3opb_A 434 KVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDI 513 (778)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---
T ss_pred cccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCc
Confidence 45677889999999999999999999999999999999999999999999999999999988655
Q ss_pred ---HHHHHHHHHHHhcccccchhhhh--c-cCChHHHHHHhhc-CChh-------------hHHHHHHHHHHHhcCc---
Q 012413 276 ---SKQNAACALMSLALIEENKSSIG--A-CGAIPPLVSLLIY-GSSR-------------GKKDALTTLYKLCSLK--- 332 (464)
Q Consensus 276 ---v~~~a~~aL~~Ls~~~~~~~~i~--~-~g~i~~Li~lL~~-~~~~-------------v~~~A~~aL~nL~~~~--- 332 (464)
.+..|+.+|.+|+...+....+. . .|+|++|+.+|.. +... -+..|+.+|.||+..+
T Consensus 514 ~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~ 593 (778)
T 3opb_A 514 GEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSD 593 (778)
T ss_dssp CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHH
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCccc
Confidence 89999999999986544333332 1 4899999999983 2211 2779999999999976
Q ss_pred --chHHHHHHc-CCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhH-HHHHhc------CcHHHHHHHHhcCCHHHHHH
Q 012413 333 --QNKERAVSA-GAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGR-EAIVEE------NGIAALVEAIEDGSVKGKEF 402 (464)
Q Consensus 333 --~~~~~iv~~-g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~------g~i~~Lv~lL~~~~~~v~~~ 402 (464)
+.+..++.+ |+++.|..+|.+++..++..|+++++||+.+++.. +.+.+. +.++.|+.++.+++.++|..
T Consensus 594 ~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~A 673 (778)
T 3opb_A 594 GEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRA 673 (778)
T ss_dssp HHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHH
T ss_pred chHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHH
Confidence 347888885 99999999999999999999999999999988764 355432 24889999999999999999
Q ss_pred HHHHHHHHhhcCHHhHHHHHHc-CChHHHHHhhhc--CCHHHHHHHHHHHHHhhcCCC
Q 012413 403 AVLTLLQLCAESVKNRGLLVRE-GGIPPLVALSQT--GSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 403 A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~lL~s--~~~~v~~~A~~aL~~L~~~~~ 457 (464)
|+++|.+++...+..+..+.+. ++++.|+.++++ ++++++.+++.++.++.++.+
T Consensus 674 AagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 674 VAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp HHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999987778777777776 899999999999 899999999999999998543
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-25 Score=203.31 Aligned_cols=198 Identities=22% Similarity=0.286 Sum_probs=184.6
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchH
Q 012413 258 NAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNK 335 (464)
Q Consensus 258 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~ 335 (464)
..|..+.|+.+|+++++.++..|+++|.+|+.. ++.+..+.+.|+++.|+++|.++++.++..|+++|++|+. .++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 467899999999999999999999999999965 6788899999999999999999999999999999999996 66888
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 336 ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 336 ~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
..+++.|+++.|+.+|.+++..++..|+++|+||+ ..+..+..+.+.|+++.|++++.++++.++..|+++|++|+..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999 56777888999999999999999999999999999999999988
Q ss_pred HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 415 ~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+..+..+.+.|+++.|+.++.++++++++.|.++|++|+++
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999853
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=200.42 Aligned_cols=196 Identities=24% Similarity=0.294 Sum_probs=182.0
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccch
Q 012413 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENK 294 (464)
Q Consensus 217 ~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~ 294 (464)
..|+.+.|+.+|++++++++..|+++|.+++. +++.+..+.+.|+++.|+.+|+++++.++..|+++|.+|+.+ ++.+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 45889999999999999999999999999996 568888999999999999999999999999999999999965 6788
Q ss_pred hhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-
Q 012413 295 SSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI- 372 (464)
Q Consensus 295 ~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~- 372 (464)
..+.+.|+++.|+.+|.++++.++..|+++|++|+. .++.+..+++.|+++.|+.++.+++..++..|+++|.+|+..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999997 456778889999999999999999999999999999999965
Q ss_pred HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 373 AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 373 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
++.+..+.+.|+++.|++++.++++.++..|+++|.+|+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999999984
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-24 Score=203.64 Aligned_cols=195 Identities=19% Similarity=0.194 Sum_probs=175.1
Q ss_pred hHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCch
Q 012413 176 QPTVKICIDGLQSSSV--AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENN 252 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~--~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~ 252 (464)
.-.++.+++.|+++++ .++..|+++|.+++.+++.++..+.+.|+||+|+.+|+++++++++.|+++|.||+. ++++
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3567888999999888 899999999999999989999999999999999999999999999999999999998 5799
Q ss_pred HHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc----------------CCh
Q 012413 253 KTLITNAGAIKSLVYVLK-TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY----------------GSS 315 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~----------------~~~ 315 (464)
+..|.+.|+||+|+++|+ .++.+++++|+.+|++|+.++++|..|++. ++|+|+.++.. .++
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 999999999999999998 479999999999999999999999999874 69999987631 256
Q ss_pred hhHHHHHHHHHHHhc-CcchHHHHHHc-CCHHHHHHhhcCC------CHHHHHHHHHHHHHHhC
Q 012413 316 RGKKDALTTLYKLCS-LKQNKERAVSA-GAVRPLVGMLAGQ------GEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 316 ~v~~~A~~aL~nL~~-~~~~~~~iv~~-g~v~~Lv~lL~~~------~~~v~~~A~~aL~nLa~ 371 (464)
.++.+|+.+|+||+. ++++|..|.+. |+|+.|+.+++.. +...+++|+.+|+||+.
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 899999999999998 56899999985 6689999999752 45679999999999985
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-24 Score=202.09 Aligned_cols=194 Identities=19% Similarity=0.191 Sum_probs=174.9
Q ss_pred CChHHHHHhhcCCCH--HHHHHHHHHHHHhcC-CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccch
Q 012413 219 GAVPALVPLLKCSDP--WTQEHSVTALLNLSL-HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENK 294 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~--~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~ 294 (464)
-.+|.|+++|+++++ +++..|+++|.+++. +++++..+.+.|+||+|+.+|++++++++..|+|+|.||+.. +++|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 458999999999887 999999999999996 578999999999999999999999999999999999999985 7899
Q ss_pred hhhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhc----------------CCCHH
Q 012413 295 SSIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLA----------------GQGEG 357 (464)
Q Consensus 295 ~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~----------------~~~~~ 357 (464)
..|++.|+||+|+++|.+ ++..+++.|+.+|+||+.+++++..+++. +++.|+.++. ..+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999985 68999999999999999999999999875 7999998763 12568
Q ss_pred HHHHHHHHHHHHhC-CHhhHHHHHhc-CcHHHHHHHHhcC------CHHHHHHHHHHHHHHhhc
Q 012413 358 MAEKAMVVLSLLAG-IAEGREAIVEE-NGIAALVEAIEDG------SVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 358 v~~~A~~aL~nLa~-~~~~~~~i~~~-g~i~~Lv~lL~~~------~~~v~~~A~~aL~~L~~~ 413 (464)
++++|+++|.||+. .+++|+.+.+. |+|+.|+.+++.. +...+++|+.+|+||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999995 67999999985 6789999999852 668999999999999853
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-23 Score=222.50 Aligned_cols=279 Identities=14% Similarity=0.111 Sum_probs=232.5
Q ss_pred CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCC
Q 012413 173 EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE-SGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHE 250 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~-~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~ 250 (464)
..+..+.+.++++|.+++.+.+.+|++.|.+++.+ +..|+.+.+ .|+++.|+.++++ .+..+...++.+|.|++...
T Consensus 330 ~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 330 INLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp CCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCC
Confidence 34567889999999998888899999999999998 666666665 6779999999996 78889999999999998732
Q ss_pred c---------------------------------------hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc
Q 012413 251 N---------------------------------------NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE 291 (464)
Q Consensus 251 ~---------------------------------------~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~ 291 (464)
+ ++..+.+.|++|.|+.+++++++.+|..++++|.+|+.++
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~ 488 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSK 488 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence 2 3456778999999999999999999999999999999999
Q ss_pred cchhhhhccCChHHHHHHhhcCChh---hHHHHHHHHHHHhcCcchHHHHHH---cCCHHHHHHhhcC-CCH--------
Q 012413 292 ENKSSIGACGAIPPLVSLLIYGSSR---GKKDALTTLYKLCSLKQNKERAVS---AGAVRPLVGMLAG-QGE-------- 356 (464)
Q Consensus 292 ~~~~~i~~~g~i~~Li~lL~~~~~~---v~~~A~~aL~nL~~~~~~~~~iv~---~g~v~~Lv~lL~~-~~~-------- 356 (464)
++|..+++.|++++|+.+|.+.... ++..|+.+|++|+.+.+....|-. .|++++|+.+|.. +..
T Consensus 489 ~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~ 568 (778)
T 3opb_A 489 NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568 (778)
T ss_dssp GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence 9999999999999999999987544 899999999999975544433311 3899999999982 221
Q ss_pred -----HHHHHHHHHHHHHhCCH-----hhHHHHHhc-CcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhH-HHHHH-
Q 012413 357 -----GMAEKAMVVLSLLAGIA-----EGREAIVEE-NGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNR-GLLVR- 423 (464)
Q Consensus 357 -----~v~~~A~~aL~nLa~~~-----~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~-~~i~~- 423 (464)
-.+.+|+.+|.|||..+ +.+..|+.+ |+++.|.++|.+++..+|..|+++|+||+... ... ..+.+
T Consensus 569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~-e~i~~k~~~~ 647 (778)
T 3opb_A 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP-LTIAAKFFNL 647 (778)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG-GGTGGGTSCC
T ss_pred ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHhh
Confidence 12779999999999764 457888885 99999999999999999999999999999754 332 23322
Q ss_pred -----cCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 424 -----EGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 424 -----~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
.+.+++|+.++.+++.++|+.|+|||.+++
T Consensus 648 ~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 648 ENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 224889999999999999999999999995
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=198.82 Aligned_cols=223 Identities=16% Similarity=0.098 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHH-HHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHh
Q 012413 233 PWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVY-VLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLL 310 (464)
Q Consensus 233 ~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL 310 (464)
.+-+..|+..|.+++.+.++...++..|++|+|+. +|+++++.++..|+|+|++++.+ +..+..+++.|++|+|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 46788999999999998889999999999999999 99999999999999999999987 57888999999999999999
Q ss_pred hcC-ChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHH
Q 012413 311 IYG-SSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAA 387 (464)
Q Consensus 311 ~~~-~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~ 387 (464)
.++ +..+++.|+++|++|+.+ ++..+.+++.|+++.|+.+|.+.+..++..|+++|.+|+ ..++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 964 889999999999999985 567788999999999999999999999999999999999 56889999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc-CChHH----HHHhhhc-C-CHHHHHHHHHHHHHhhcC
Q 012413 388 LVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVRE-GGIPP----LVALSQT-G-SVRAKHKAETLLGYLREP 455 (464)
Q Consensus 388 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~-g~i~~----Lv~lL~s-~-~~~v~~~A~~aL~~L~~~ 455 (464)
|+.+|.+++..++..|+++|++|+...+.....+... ..+.. -++-++. + +.++.+.|..++..+-..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998765544433321 11211 2333442 2 468888899999877643
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=192.71 Aligned_cols=235 Identities=17% Similarity=0.146 Sum_probs=192.3
Q ss_pred hHHHHHHHHhcCCCC------------HHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHH
Q 012413 176 QPTVKICIDGLQSSS------------VAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVP-LLKCSDPWTQEHSVTA 242 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~------------~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~-lL~~~~~~v~~~A~~a 242 (464)
...++.++..|.++. .+-|..|+..|.++..+ .++...+.+.|++|+|+. +|+++++.++..|+++
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~ 105 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQL 105 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345667777777652 35788899999999987 567788889999999999 9999999999999999
Q ss_pred HHHhcCC-CchHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHH
Q 012413 243 LLNLSLH-ENNKTLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKK 319 (464)
Q Consensus 243 L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~ 319 (464)
|++++.+ +..++.+++.|++|+|+.+|++ ++..++..|+|+|.+|+.+ +...+.+.+.|++|.|+.+|.+++..+++
T Consensus 106 Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~ 185 (296)
T 1xqr_A 106 IGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKV 185 (296)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 9999985 6788899999999999999996 4899999999999999976 46677888999999999999999999999
Q ss_pred HHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHHHhc-CcHH----HHHHHH
Q 012413 320 DALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEE-NGIA----ALVEAI 392 (464)
Q Consensus 320 ~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~-g~i~----~Lv~lL 392 (464)
.|+++|.+|+. +++.+..+++.|+++.|+.+|.+++..+++.|+.+|++|+.. +.....+... ..+. .-.+-+
T Consensus 186 ~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~l 265 (296)
T 1xqr_A 186 KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 265 (296)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHc
Confidence 99999999998 577899999999999999999999999999999999999965 3333333321 1122 222333
Q ss_pred hcC--CHHHHHHHHHHHHHHh
Q 012413 393 EDG--SVKGKEFAVLTLLQLC 411 (464)
Q Consensus 393 ~~~--~~~v~~~A~~aL~~L~ 411 (464)
+.. ..++...|..++-++.
T Consensus 266 q~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 266 QQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp TTCGGGHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHc
Confidence 322 3566666666666655
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-16 Score=149.94 Aligned_cols=255 Identities=13% Similarity=0.044 Sum_probs=202.1
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCC
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~ 174 (464)
++..++.|.++|.| ++.+|..+..+|+++. +
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~------------~------------------------------------ 52 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRG------------G------------------------------------ 52 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC------------C------------------------------------
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccC------------C------------------------------------
Confidence 34567888888888 8888988888888761 0
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHhcCC-Cch
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALV-PLLKCSDPWTQEHSVTALLNLSLH-ENN 252 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll-~lL~~~~~~v~~~A~~aL~~La~~-~~~ 252 (464)
...++.|+..|.++++.+|..|+++|..+........ ..++.|. .+++++++.++..|+++|+++... +..
T Consensus 53 -~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~ 125 (280)
T 1oyz_A 53 -QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY 125 (280)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred -chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc
Confidence 2466777888999999999999999988864322111 1233444 346789999999999999998742 211
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 253 KTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
....++.|+.+|+++++.+|..|+++|.++. +.++++.|+.++.++++.+|..|+++|+.+....
T Consensus 126 -----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~ 190 (280)
T 1oyz_A 126 -----SPKIVEQSQITAFDKSTNVRRATAFAISVIN----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN 190 (280)
T ss_dssp -----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred -----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc
Confidence 2346899999999999999999999999873 3458999999999999999999999999985432
Q ss_pred chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 333 QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 333 ~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
+ .+++.|+.++.+++..++..|+.+|+.+.. ..+++.|+..+.+++ ++..|+.+|+.+..
T Consensus 191 ~--------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 191 S--------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp H--------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred H--------HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 2 367899999999999999999999998873 568999999998754 89999999999874
Q ss_pred cCHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHH
Q 012413 413 ESVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGY 451 (464)
Q Consensus 413 ~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~ 451 (464)
..+++.|..++.+ .++++...+..+|+.
T Consensus 251 -----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 251 -----------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp -----------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred -----------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 2578999999976 467888888888764
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-16 Score=164.07 Aligned_cols=276 Identities=15% Similarity=0.143 Sum_probs=225.1
Q ss_pred hHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCC-c
Q 012413 176 QPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLHE-N 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~-~ 251 (464)
..+|+.|...+++ .-.+-|+.|+..|+.++++.+ ..+ ..++++.|+..|+. .|.++...++.+|.++.... +
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~---~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR---LEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT---THH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH---HHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 5688888888875 558899999999999997643 333 46899999999987 68999999999999876532 1
Q ss_pred h-----------------HHH-HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-c-cchhhhhc-cCChHHHHHHh
Q 012413 252 N-----------------KTL-ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-E-ENKSSIGA-CGAIPPLVSLL 310 (464)
Q Consensus 252 ~-----------------~~~-i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~-~~~~~i~~-~g~i~~Li~lL 310 (464)
. .+. +.+.+.|+.|+.+|++.+..+|.+++..|..|+.+ + ..+..|.. .++|+.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 1 112 23578999999999999999999999999999977 3 47888885 69999999999
Q ss_pred hcCChhhHHHHHHHHHHHhcCcchHHHHHH-cCCHHHHHHhhcCCC----HHHHHHHHHHHHHHh-CCHhhHHHHHhcCc
Q 012413 311 IYGSSRGKKDALTTLYKLCSLKQNKERAVS-AGAVRPLVGMLAGQG----EGMAEKAMVVLSLLA-GIAEGREAIVEENG 384 (464)
Q Consensus 311 ~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~----~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~ 384 (464)
.+....+|..++.+|.+|+.+....++++. +|+++.|+.++..++ ..+...++.+|.||. .++.++..+.+.|+
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 999999999999999999997776666665 799999999998755 378999999999999 56678999999999
Q ss_pred HHHHHHHHhcCC------HHHHHH---HHHHHHHHhhc------CHHhHHHHHHcCChHHHHHhhhcC--CHHHHHHHHH
Q 012413 385 IAALVEAIEDGS------VKGKEF---AVLTLLQLCAE------SVKNRGLLVREGGIPPLVALSQTG--SVRAKHKAET 447 (464)
Q Consensus 385 i~~Lv~lL~~~~------~~v~~~---A~~aL~~L~~~------~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~ 447 (464)
++.|..+++.+. +....+ +..++.-|+.. .+.++..+++.|++++|++++.+. ...++..|..
T Consensus 256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~ 335 (651)
T 3grl_A 256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN 335 (651)
T ss_dssp GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence 999999997432 223333 56666666654 346788999999999999999886 5689988888
Q ss_pred HHHHhhcC
Q 012413 448 LLGYLREP 455 (464)
Q Consensus 448 aL~~L~~~ 455 (464)
++..+.+.
T Consensus 336 tla~~irg 343 (651)
T 3grl_A 336 TVSEVIRG 343 (651)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 88877654
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-15 Score=157.74 Aligned_cols=338 Identities=12% Similarity=0.084 Sum_probs=244.5
Q ss_pred cCCcchhHHHHHHhhhhh--cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhh
Q 012413 92 KSTISEDDYLNVSQAFSD--FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIES 169 (464)
Q Consensus 92 ~~~~~e~~~~~L~~ll~~--~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~ 169 (464)
..+.-+|.++.|+.=+++ ...=|+.|+.+|+.++. ++...+... -++.++..|+.+..+.++.+
T Consensus 15 ~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk--~y~~~Vg~~-----------~l~~li~~L~~d~~D~e~v~- 80 (651)
T 3grl_A 15 PQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSK--KYRLEVGIQ-----------AMEHLIHVLQTDRSDSEIIG- 80 (651)
T ss_dssp ---CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT--TTTTHHHHH-----------THHHHHHHHHSCTTCHHHHH-
T ss_pred CCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHH--HhHHHhhhh-----------hHHHHHHHHhcccccHHHHH-
Confidence 345678899999998887 55569999999999853 333332211 13445777777665455544
Q ss_pred cCCCCchHHHHHHHHhcCCCCHHH--H--HHHHHHHHHHhccCchhHHH-HHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 012413 170 ISPEDLQPTVKICIDGLQSSSVAI--K--RSAAAKLRLLAKNRSDNRVL-IGESGAVPALVPLLKCSDPWTQEHSVTALL 244 (464)
Q Consensus 170 ~~~~~~~~~v~~Lv~~L~s~~~~v--r--~~A~~~L~~La~~~~~~r~~-i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~ 244 (464)
.+++.|...+...+.+- + ..+..-++ ..+.+. +.+.+.|+.|+.+|++++..+|..++..|.
T Consensus 81 -------~~LetL~~l~~~~~~~~~~~~~~~~~~~~~------~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~ 147 (651)
T 3grl_A 81 -------YALDTLYNIISNDEEEEVEENSTRQSEDLG------SQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLT 147 (651)
T ss_dssp -------HHHHHHHHHHCCC--------------CHH------HHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhCCCCcccccccccccchHHH------HHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHH
Confidence 34445444443221110 0 00000000 011122 345789999999999999999999999999
Q ss_pred HhcCC-Cc-hHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCCh----h
Q 012413 245 NLSLH-EN-NKTLITN-AGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSS----R 316 (464)
Q Consensus 245 ~La~~-~~-~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~----~ 316 (464)
.|+.+ ++ .++.|.. .++|+.|+.+|.+..+.+|-.++..|.+|+.+. +.+..+.-.|+|+.|+.++..+.. .
T Consensus 148 ~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggi 227 (651)
T 3grl_A 148 SLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGI 227 (651)
T ss_dssp HHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHH
T ss_pred HHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccch
Confidence 99875 33 6777775 699999999999999999999999999999985 455555557999999999988643 6
Q ss_pred hHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHH------HHHH---HHHHHHHHhCC-------HhhHHHH
Q 012413 317 GKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEG------MAEK---AMVVLSLLAGI-------AEGREAI 379 (464)
Q Consensus 317 v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~------v~~~---A~~aL~nLa~~-------~~~~~~i 379 (464)
+...++.+|.||.+. +.|+..|.+.|+++.|..+|..+... ...+ ++.++.-|... ..++..+
T Consensus 228 vv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~ 307 (651)
T 3grl_A 228 VVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAM 307 (651)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 888999999999995 56999999999999999999754321 2223 56666667632 3578899
Q ss_pred HhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcC-----ChHHHHH----hhhcC-CHHHHHHHHH
Q 012413 380 VEENGIAALVEAIEDG--SVKGKEFAVLTLLQLCAESVKNRGLLVREG-----GIPPLVA----LSQTG-SVRAKHKAET 447 (464)
Q Consensus 380 ~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g-----~i~~Lv~----lL~s~-~~~v~~~A~~ 447 (464)
.+.|+++.|++++... ...++..|+.+++.+.+.++.++..+.+.. ..+.++. ++.+. ..++|..|+.
T Consensus 308 ~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~ 387 (651)
T 3grl_A 308 FQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLY 387 (651)
T ss_dssp HHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHH
Confidence 9999999999999865 788999999999999999999999998754 2334444 35444 4689999999
Q ss_pred HHHHhhcCC
Q 012413 448 LLGYLREPR 456 (464)
Q Consensus 448 aL~~L~~~~ 456 (464)
.++.+....
T Consensus 388 cl~ay~~~N 396 (651)
T 3grl_A 388 CFQCFLYKN 396 (651)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhCC
Confidence 998877543
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=147.84 Aligned_cols=227 Identities=11% Similarity=0.030 Sum_probs=184.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
..++.|+..|.++++.+|..|+++|..+.. .++++.|+.+|+++++.++..|+++|+.+...+....
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~-- 89 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-- 89 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch--
Confidence 467788999999999999999999988762 3578999999999999999999999999875433211
Q ss_pred HhcCcHHHHH-HHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH
Q 012413 257 TNAGAIKSLV-YVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 257 ~~~g~i~~Lv-~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
..++.|. .+++++++.+|..++++|..+..... ......++.|+.+|.++++.+|..|+.+|+++..
T Consensus 90 ---~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----- 157 (280)
T 1oyz_A 90 ---NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----- 157 (280)
T ss_dssp ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----
Confidence 1334444 35678899999999999999864211 0123458999999999999999999999998643
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH
Q 012413 336 ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV 415 (464)
Q Consensus 336 ~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~ 415 (464)
.++++.|+.++.+++..++..|+++|+.+.... ..+++.|+.++.++++.+|..|+++|+.+..
T Consensus 158 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--- 221 (280)
T 1oyz_A 158 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--- 221 (280)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---
Confidence 358999999999999999999999999986321 2468899999999999999999999999973
Q ss_pred HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 416 KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 416 ~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
..+++.|+.++.+++ ++..|.++|+.+..
T Consensus 222 --------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 222 --------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp --------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred --------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 357899999998755 99999999999865
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-15 Score=139.58 Aligned_cols=194 Identities=20% Similarity=0.180 Sum_probs=165.0
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhh
Q 012413 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSS 296 (464)
Q Consensus 217 ~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~ 296 (464)
..+.++.|+.+|+++++.++..|+.+|+.+.. .++++.|+.+|.++++.+|..++++|..+.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 45789999999999999999999999988753 468999999999999999999999999973
Q ss_pred hhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhH
Q 012413 297 IGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGR 376 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 376 (464)
..++++.|+.+|.++++.++..|+.+|+.+.. .++++.|+.++.++++.++..|+.+|+.+..
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 35678999999999999999999999998753 3488999999999999999999999999864
Q ss_pred HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 377 EAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
...++.|+.++.++++.++..|+.+|+.+.. ..+++.|..++.++++.||..|.++|..+....
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 4589999999999999999999999999963 236788999999999999999999999999877
Q ss_pred CCCCC
Q 012413 457 QEGPS 461 (464)
Q Consensus 457 ~~~~~ 461 (464)
.+.++
T Consensus 206 ~~~~~ 210 (211)
T 3ltm_A 206 HHHHH 210 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 66543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.4e-15 Score=135.92 Aligned_cols=188 Identities=26% Similarity=0.278 Sum_probs=163.9
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
...++.|+..|+++++.+|..|+..|..+.. .++++.|+.+|+++++.++..|+.+|+.+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 5788999999999999999999999976643 378999999999999999999999998875
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
..++++.|+.+|+++++.+|..++++|..+. +.++++.|+++|.++++.++..|+.+|+.+..
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 2468999999999999999999999999973 34578999999999999999999999999843
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 336 ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 336 ~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
..+++.|+.++.++++.++..|+.+|+.+.. ..+++.|.+++.++++.+|..|..+|.++....
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 3478999999999999999999999998864 457889999999999999999999999998654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-14 Score=132.91 Aligned_cols=185 Identities=26% Similarity=0.285 Sum_probs=164.4
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
....+.+++.|+++++.+|..|+.+|..+.. .++++.|+.+|+++++.++..|+.+|+.+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-------- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 5788889999999999999999999976653 367999999999999999999999998875
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
..++++.|+.+|.++++.+|..|+++|..+. +..+++.|+.+|.++++.++..|+++|+.+..
T Consensus 74 --~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 74 --DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 2358999999999999999999999999973 34578999999999999999999999999753
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 336 ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 336 ~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
.+.++.|+.++.++++.++..|+.+|+.+.. ..+++.|..++.++++.++..|+.+|..+.
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999998853 357889999999999999999999999875
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=133.66 Aligned_cols=187 Identities=20% Similarity=0.195 Sum_probs=165.2
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhh
Q 012413 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSS 296 (464)
Q Consensus 217 ~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~ 296 (464)
..+..+.++.+|+++++.++..|+.+|+.+.. .++++.|+.+|.++++.+|..++++|..+.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-------- 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 73 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 34678899999999999999999999988752 368999999999999999999999999873
Q ss_pred hhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhH
Q 012413 297 IGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGR 376 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 376 (464)
...+++.|+.+|.++++.+|..|+++|+.+.. .++++.|+.++.++++.++..|+.+|+.+..
T Consensus 74 --~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 74 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 34678999999999999999999999998753 3488999999999999999999999998864
Q ss_pred HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 377 EAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
...++.|+.++.++++.++..|+++|+.+.. ..+++.|..++.++++.||..|.++|..+..
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999963 2368899999999999999999999998864
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.1e-15 Score=163.97 Aligned_cols=339 Identities=16% Similarity=0.087 Sum_probs=229.9
Q ss_pred HHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchh---------hHhh
Q 012413 99 DYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFST---------EIIE 168 (464)
Q Consensus 99 ~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~---------~i~~ 168 (464)
....|.++|.+ .+.+|..++..++.++..-.. +.+. + ++|.+ +..+...+... .+.+
T Consensus 91 ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-------~~wp--~-ll~~L---~~~l~~~~~~~r~~al~~L~~i~~ 157 (852)
T 4fdd_A 91 IKSECLNNIGDSSPLIRATVGILITTIASKGEL-------QNWP--D-LLPKL---CSLLDSEDYNTCEGAFGALQKICE 157 (852)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-------TTCT--T-HHHHH---HHHHSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-------cccH--H-HHHHH---HHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34455566777 888999999999998754210 1000 0 22222 34444332100 0111
Q ss_pred hcC--------CCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHH
Q 012413 169 SIS--------PEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSV 240 (464)
Q Consensus 169 ~~~--------~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~ 240 (464)
... ...+...++.+++.++++++.+|..|+++|..+....+...... -.+.++.|+.++.+++++++..|+
T Consensus 158 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~~d~~~~vr~~a~ 236 (852)
T 4fdd_A 158 DSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALAGDEEPEVRKNVC 236 (852)
T ss_dssp HHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHH
Confidence 111 12245678888888999999999999999988876544221111 125788888999999999999999
Q ss_pred HHHHHhcCCC-chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--cCChHHHHHHh-------
Q 012413 241 TALLNLSLHE-NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--CGAIPPLVSLL------- 310 (464)
Q Consensus 241 ~aL~~La~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Li~lL------- 310 (464)
++|..++... +.-.... .+.++.++.++++.++.++..|++++..++.....+..+.. ...+|.++..+
T Consensus 237 ~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~ 315 (852)
T 4fdd_A 237 RALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDI 315 (852)
T ss_dssp HHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHH
Confidence 9999998742 2111111 24788888999999999999999999999876433332211 23456666666
Q ss_pred ----hc-----------CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhh
Q 012413 311 ----IY-----------GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEG 375 (464)
Q Consensus 311 ----~~-----------~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 375 (464)
.+ .+..+++.|..+|..|+..... .++. ..++.+..++.+.+..++..|+++|++++.....
T Consensus 316 ~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~ 392 (852)
T 4fdd_A 316 ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 392 (852)
T ss_dssp HHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH
T ss_pred HHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH
Confidence 23 2335799999999999873321 1222 3678888888888999999999999999964332
Q ss_pred HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 376 REAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 376 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.-.-.-.++++.++.++.++++.+|..|+++|++++...........-.+.++.|+..+.++++.+|..|+++|.++++.
T Consensus 393 ~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 393 GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 11112256789999999999999999999999999864221110111135678899999899999999999999999863
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.3e-14 Score=148.43 Aligned_cols=336 Identities=13% Similarity=0.096 Sum_probs=205.1
Q ss_pred hhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhh------
Q 012413 97 EDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIES------ 169 (464)
Q Consensus 97 e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~------ 169 (464)
++.++.|.++++| ++.+|..+.++++.++.......... .++|.+ ...+.+++ ..++..
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~---------~l~~~l---~~~~~d~~--~~vr~~a~~~l~ 228 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKS---------EIIPMF---SNLASDEQ--DSVRLLAVEACV 228 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHH---------THHHHH---HHHHTCSC--HHHHTTHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHH---------HHHHHH---HHHhcCCc--HHHHHHHHHHHH
Confidence 3445556667777 89999999999999987654321110 133333 34444333 222111
Q ss_pred -c----CCC-CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 012413 170 -I----SPE-DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTAL 243 (464)
Q Consensus 170 -~----~~~-~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL 243 (464)
+ ... .....++.+...++++++.+|..|+.+|..++..... .......++.++.+++++++++|..|+.+|
T Consensus 229 ~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 305 (588)
T 1b3u_A 229 NIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKV 305 (588)
T ss_dssp HHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 1 110 0123566667778889999999999999999864211 122346789999999999999999999999
Q ss_pred HHhcCCC--chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHH
Q 012413 244 LNLSLHE--NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDA 321 (464)
Q Consensus 244 ~~La~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A 321 (464)
..++..- +.+....-...+|.+..++++++..+|..++++|..++..-... ......+|.+..++.++++.+|..+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~~a 383 (588)
T 1b3u_A 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--NTIEHLLPLFLAQLKDECPEVRLNI 383 (588)
T ss_dssp HHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9998642 22222233567888999999999999999999999987542111 1112357888888888888888888
Q ss_pred HHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHH
Q 012413 322 LTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKE 401 (464)
Q Consensus 322 ~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 401 (464)
+.+|..++..-... . .....+|.|..++.+.+..++..++.+|..++..-.. .+.....++.++..+.+.+..+|.
T Consensus 384 ~~~l~~l~~~~~~~-~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~ 459 (588)
T 1b3u_A 384 ISNLDCVNEVIGIR-Q-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp HTTCHHHHHHSCHH-H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHH
T ss_pred HHHHHHHHHhcCHH-H-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHH
Confidence 88887776521110 0 1122455555555555555666666666655421000 000112344445555555555555
Q ss_pred HHHHHHHHHhhc-C-----------------------------------HHhHHHHHHcCChHHHHHhhhcCCHHHHHHH
Q 012413 402 FAVLTLLQLCAE-S-----------------------------------VKNRGLLVREGGIPPLVALSQTGSVRAKHKA 445 (464)
Q Consensus 402 ~A~~aL~~L~~~-~-----------------------------------~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A 445 (464)
.|+.+|+.++.. . ........-...++.|+.++.+++++||..+
T Consensus 460 ~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a 539 (588)
T 1b3u_A 460 AATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNV 539 (588)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHH
Confidence 555555554421 0 0111111223567777777777777888888
Q ss_pred HHHHHHhhcC
Q 012413 446 ETLLGYLREP 455 (464)
Q Consensus 446 ~~aL~~L~~~ 455 (464)
.++|+.+...
T Consensus 540 ~~~l~~l~~~ 549 (588)
T 1b3u_A 540 AKSLQKIGPI 549 (588)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHHH
Confidence 8888777653
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=145.42 Aligned_cols=330 Identities=12% Similarity=0.032 Sum_probs=234.6
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCch---hhhhcCcccCcccccCCCchhhhhhhcccCch--------
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPE---NILRQPNENNCQAELEPEPEPCLGFLQRENFS-------- 163 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~---~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s-------- 163 (464)
.+..++.+.++++| .+.+|..++.+++.++...... ..+.+ .++..+++.+..
T Consensus 240 ~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~---------------~l~~~l~d~~~~vr~~a~~~ 304 (588)
T 1b3u_A 240 EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVP---------------AFQNLMKDCEAEVRAAASHK 304 (588)
T ss_dssp HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHH---------------HHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHH---------------HHHHHhCCCcHHHHHHHHHH
Confidence 46677778888888 7889999999999998753221 11211 112222221100
Q ss_pred -hhHhhhcCCC-----CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 012413 164 -TEIIESISPE-----DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237 (464)
Q Consensus 164 -~~i~~~~~~~-----~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~ 237 (464)
..+....... .....++.+...++++++.+|..++++|..++..-.. .......+|.+..+++++++++|.
T Consensus 305 l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~ 381 (588)
T 1b3u_A 305 VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRL 381 (588)
T ss_dssp HHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHH
T ss_pred HHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHH
Confidence 0111111111 1245677778888999999999999999888753211 111235788999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhh
Q 012413 238 HSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRG 317 (464)
Q Consensus 238 ~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v 317 (464)
.++.+|..+...-... ......+|.|..++++.+..+|..++.+|..++..-.. .......+|.++.+|.+.+..+
T Consensus 382 ~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~V 457 (588)
T 1b3u_A 382 NIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAI 457 (588)
T ss_dssp HHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHH
T ss_pred HHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHH
Confidence 9999998887532111 12235788999999999999999999999998754111 1122345788899999999999
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCH
Q 012413 318 KKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSV 397 (464)
Q Consensus 318 ~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 397 (464)
|..|+.+|+.++..-... ......+|.|+.++.+++..++..++.+++.++..-. ........++.|+.++.++++
T Consensus 458 r~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~l~d~~~ 533 (588)
T 1b3u_A 458 REAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG--QDITTKHMLPTVLRMAGDPVA 533 (588)
T ss_dssp HHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHGGGCSCH
T ss_pred HHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhCCCCCc
Confidence 999999999998732221 2234588899999888889999999999999985311 112335688999999999999
Q ss_pred HHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 398 KGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 398 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.+|..++++|+.++..-.. .......++.|..++.+.+++||..|.++|..|.+
T Consensus 534 ~Vr~~a~~~l~~l~~~~~~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 534 NVRFNVAKSLQKIGPILDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HHHHHHHHHHHHHGGGSCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhch---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 9999999999999864211 12234567788888888899999999999998864
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=153.74 Aligned_cols=278 Identities=13% Similarity=0.079 Sum_probs=204.8
Q ss_pred CCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH----hcCChHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 012413 172 PEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG----ESGAVPALVPLLKCSDPWTQEHSVTALLNLS 247 (464)
Q Consensus 172 ~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~----~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La 247 (464)
.+.|...++.|+..+.++++.+|..++.+|..++.+.+.....-. -...++.|+++++++++.+|..|+++|.++.
T Consensus 123 ~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~ 202 (852)
T 4fdd_A 123 LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI 202 (852)
T ss_dssp TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTT
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 457788999999999999999999999999999876443211100 1246788888899999999999999999887
Q ss_pred CCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cc-hhhhhccCChHHHHHHhhcCChhhHHHHHHHH
Q 012413 248 LHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-EN-KSSIGACGAIPPLVSLLIYGSSRGKKDALTTL 325 (464)
Q Consensus 248 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~-~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL 325 (464)
........-.-.+.++.|+.++.++++.+|..++++|..++... +. +..+ .+.++.++.++.+.++.++..|+..+
T Consensus 203 ~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l 280 (852)
T 4fdd_A 203 ISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFW 280 (852)
T ss_dssp TTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 64322111111357888999999999999999999999998752 21 1111 24678888889999999999999999
Q ss_pred HHHhcCcchHHHHH--HcCCHHHHHHhh-----------cC-----------CCHHHHHHHHHHHHHHhCCHhhHHHHHh
Q 012413 326 YKLCSLKQNKERAV--SAGAVRPLVGML-----------AG-----------QGEGMAEKAMVVLSLLAGIAEGREAIVE 381 (464)
Q Consensus 326 ~nL~~~~~~~~~iv--~~g~v~~Lv~lL-----------~~-----------~~~~v~~~A~~aL~nLa~~~~~~~~i~~ 381 (464)
..++.....+..+. -...+|.++..+ .+ ....++..|+.+|..|+.... ..+.
T Consensus 281 ~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~- 357 (852)
T 4fdd_A 281 LTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL- 357 (852)
T ss_dssp HHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-
Confidence 99998654333221 123567777776 22 112357888899998884321 1111
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
...++.+.+++.+++..+|..|+++|++++......-.. .-.++++.|+.++.++++.||..|+|+|+.+++.
T Consensus 358 ~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 246778888888899999999999999999776532111 1246789999999999999999999999998873
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-12 Score=130.33 Aligned_cols=275 Identities=13% Similarity=0.098 Sum_probs=195.9
Q ss_pred CchHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhcC
Q 012413 174 DLQPTVKICIDGLQSS--SVAIKRSAAAKLRLLAKNR-SDNRVLIGESGAVPALVPLLKCS--DPWTQEHSVTALLNLSL 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~--~~~vr~~A~~~L~~La~~~-~~~r~~i~~~g~i~~Ll~lL~~~--~~~v~~~A~~aL~~La~ 248 (464)
.|...++.|+..+.++ ++.+|..|+.+|..++.+. +..-.... ...++.++.+|+++ ++.+|..|+.+++++..
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567888889999888 9999999999999998753 22111111 24778888999887 79999999999999764
Q ss_pred CCc-hH-HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc--chhhhhccCChHHHHHHhhcCChhhHHHHHHH
Q 012413 249 HEN-NK-TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE--NKSSIGACGAIPPLVSLLIYGSSRGKKDALTT 324 (464)
Q Consensus 249 ~~~-~~-~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~--~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~a 324 (464)
.-. .. ......-.++.|..++.+++..++..++++|..++.... .+..+ ..+.++.++..+.+.+..++..|+..
T Consensus 204 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~ 282 (462)
T 1ibr_B 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEF 282 (462)
T ss_dssp TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 211 10 001111146677777888899999999999999886521 11211 12667888888888899999999999
Q ss_pred HHHHhcCcchH------------------HHHHH---cCCHHHHHHhhcCC-------CHHHHHHHHHHHHHHhCCHhhH
Q 012413 325 LYKLCSLKQNK------------------ERAVS---AGAVRPLVGMLAGQ-------GEGMAEKAMVVLSLLAGIAEGR 376 (464)
Q Consensus 325 L~nL~~~~~~~------------------~~iv~---~g~v~~Lv~lL~~~-------~~~v~~~A~~aL~nLa~~~~~~ 376 (464)
+..++...... ..+++ ...+|.++..+.+. +..++..|+.+|..|+..-.
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-- 360 (462)
T 1ibr_B 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-- 360 (462)
T ss_dssp HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--
Confidence 99987643100 00111 33667777777532 23578899999999984221
Q ss_pred HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH-H-hHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 377 EAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV-K-NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~-~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
..+. ..+++.+.+.+.+.+..+|..|+.+|+.++.... . ....+ ..+++.|+..+.++++.||..|+|+|+.+++
T Consensus 361 ~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 361 DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp TTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1222 2467777788888999999999999999996432 1 11111 4678999999999999999999999999987
Q ss_pred C
Q 012413 455 P 455 (464)
Q Consensus 455 ~ 455 (464)
.
T Consensus 438 ~ 438 (462)
T 1ibr_B 438 L 438 (462)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-11 Score=131.44 Aligned_cols=327 Identities=16% Similarity=0.089 Sum_probs=214.6
Q ss_pred hhHHHHHHhhhhh-cccchhhhHHHHHHhhcC-CCchhhhhcCcccCcccccCCCchhhhhhhcccCc-----hhhHhhh
Q 012413 97 EDDYLNVSQAFSD-FSVCSSDISGELQRLASL-PSPENILRQPNENNCQAELEPEPEPCLGFLQRENF-----STEIIES 169 (464)
Q Consensus 97 e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~-~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~-----s~~i~~~ 169 (464)
.+.+..+.+++.+ +..+|+-+..++..++.. ++..-- ....+...|+..+. .-..+..
T Consensus 48 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l---------------~~n~l~kdL~~~n~~ir~~AL~~L~~ 112 (591)
T 2vgl_B 48 SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIM---------------AVNSFVKDCEDPNPLIRALAVRTMGC 112 (591)
T ss_dssp GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHT---------------THHHHGGGSSSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHH---------------HHHHHHHHcCCCCHHHHHHHHHHHHc
Confidence 4566777888887 778888888888877653 111100 01111222222221 0111111
Q ss_pred cCC-CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 012413 170 ISP-EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 170 ~~~-~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~ 248 (464)
+.. ......++.+.++|.++++.||..|+.+|..+...+++. +.+.+.++.|..+|.++++.++..|+.+|+.++.
T Consensus 113 i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 113 IRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp CCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 221 223456777889999999999999999999998876653 2345789999999999999999999999999987
Q ss_pred CCc-hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc-chhhhhccCChHHHHHHhhcCChhhHHHHHHHHH
Q 012413 249 HEN-NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE-NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLY 326 (464)
Q Consensus 249 ~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~ 326 (464)
+.. ........+.++.|+..+.+.++-.+...+.+|..++..++ .. ...++.+..+|.+.++.|+..|++++.
T Consensus 190 ~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~ 264 (591)
T 2vgl_B 190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLM 264 (591)
T ss_dssp SCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHH
T ss_pred hCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 532 21011123457788888888999999999999988875422 11 235778888889999999999999999
Q ss_pred HHhc----CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHh------------------h-HHHH---
Q 012413 327 KLCS----LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAE------------------G-REAI--- 379 (464)
Q Consensus 327 nL~~----~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~------------------~-~~~i--- 379 (464)
.+.. +++....++ ..+.+.|+.++. .++.++..|+.+|..++. .+. . +..+
T Consensus 265 ~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L 342 (591)
T 2vgl_B 265 KFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIM 342 (591)
T ss_dssp HSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHH
T ss_pred HHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHH
Confidence 9974 234433333 336677776664 678888888888888863 110 0 1111
Q ss_pred H---hcC----cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 380 V---EEN----GIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 380 ~---~~g----~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
. ... .++.|.+++.+.+.+++..++++|+.++..-+.... ..++.|++++......++..+..+++.+
T Consensus 343 ~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 343 IRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp HHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 1 122 456677777788999999999999999976543221 2345555555555555555555555554
Q ss_pred h
Q 012413 453 R 453 (464)
Q Consensus 453 ~ 453 (464)
.
T Consensus 418 i 418 (591)
T 2vgl_B 418 F 418 (591)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.39 E-value=7.9e-12 Score=133.97 Aligned_cols=263 Identities=16% Similarity=0.152 Sum_probs=191.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
+.++.+..+|.++++.|+..|+.+|..++.+++..+......+.+..|+..+.+.+++.+...+.+|..++..++..
T Consensus 160 ~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~--- 236 (591)
T 2vgl_B 160 GFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE--- 236 (591)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH---
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH---
Confidence 47788899999999999999999999999886643211112345777888888899999999999998887543211
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc----ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-C
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALI----EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-L 331 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~----~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~ 331 (464)
....++.+..+|++.++.++..|++++..+... ++....+ -....+.|+.++. .++.+|..|+.+|..+.. +
T Consensus 237 -~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~ 313 (591)
T 2vgl_B 237 -AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKR 313 (591)
T ss_dssp -HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhC
Confidence 134678888889999999999999999998742 2322222 1234567776654 677888888888887765 2
Q ss_pred cch-------------------HHH---H---HHc----CCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHh
Q 012413 332 KQN-------------------KER---A---VSA----GAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVE 381 (464)
Q Consensus 332 ~~~-------------------~~~---i---v~~----g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~ 381 (464)
++. +.. + ... ..++.|..++.+.+.+++..++++|+.++. ++...
T Consensus 314 p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~----- 388 (591)
T 2vgl_B 314 PEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA----- 388 (591)
T ss_dssp CSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----
T ss_pred hHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----
Confidence 211 011 0 111 245566677778889999999999999994 44322
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcC
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~~ 455 (464)
...++.|++++.+....++..++.++.++....+.. ...+++.|.+.+.+ ..+.++..+.|+|+..+..
T Consensus 389 ~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~ 458 (591)
T 2vgl_B 389 ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAER 458 (591)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHccccc
Confidence 346789999999999999999999999987654432 25678899998875 4688999999999887654
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-10 Score=123.83 Aligned_cols=221 Identities=16% Similarity=0.080 Sum_probs=159.5
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-chHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-~~~~ 254 (464)
+..++.+.++|.+.++.||..|+.++..+...+++.. .+.++.+..+|.+.++.++..|+.+|..++.+. +...
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 3567777889999999999999999999998766532 268888999999999999999999999998753 2212
Q ss_pred HHHhcCcHHHHHHHHcc---------------CCHHHHHHHHHHHHHhcccc-cchhh----------------------
Q 012413 255 LITNAGAIKSLVYVLKT---------------GTETSKQNAACALMSLALIE-ENKSS---------------------- 296 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~---------------~~~~v~~~a~~aL~~Ls~~~-~~~~~---------------------- 296 (464)
.+ ...+|.|+.+|.+ .++-++...+.+|..++..+ +....
T Consensus 216 ~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 216 HF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp HH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 22 2467777776653 36667776777776665431 11000
Q ss_pred -------hh--------ccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHH
Q 012413 297 -------IG--------ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEK 361 (464)
Q Consensus 297 -------i~--------~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~ 361 (464)
+. ...+++.|..+|.+.++.+|..|+.+|..++.... .++ ....+.++.++.+++..++..
T Consensus 294 ~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~-~~~~~~i~~~l~d~d~~Ir~~ 369 (618)
T 1w63_A 294 LYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAV-QRHRSTIVDCLKDLDVSIKRR 369 (618)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHH-GGGHHHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHH-HHHHHHHHHHccCCChhHHHH
Confidence 00 01246677777888888888888888888876322 122 225677888888888999999
Q ss_pred HHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 362 AMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 362 A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
|+.+|..|+..... . ..+..|+.++.+.+.+++..++.+|+.++..
T Consensus 370 alelL~~l~~~~nv-~-----~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 370 AMELSFALVNGNNI-R-----GMMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHHCCSSST-H-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcccccH-H-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999998863321 1 1457788888888899999999999998863
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=99.22 E-value=8.5e-11 Score=128.07 Aligned_cols=193 Identities=13% Similarity=0.082 Sum_probs=154.6
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHH-HHHHccCCHHHHHHHHHHHHHhccc--ccchh
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSL-VYVLKTGTETSKQNAACALMSLALI--EENKS 295 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~L-v~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~ 295 (464)
+.|.++++.|+++++..|..||++|.+|+.++..++.+...|+|..+ ..+|.+++.++|.+|+++|.||+.+ .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 45667888899999999999999999999988999999999998775 5578999999999999999999976 46788
Q ss_pred hhhccCChHHHHHHhhcCC---------------------hhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcC
Q 012413 296 SIGACGAIPPLVSLLIYGS---------------------SRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAG 353 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~~~~---------------------~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~ 353 (464)
.++..|++++|..+|.... ..+..+++.+|++||. +.+....+...++++.|+.+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8999999999999986421 1234467889999998 55677788889999999999843
Q ss_pred ---CCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCc---HHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 354 ---QGEGMAEKAMVVLSLLA-GIAEGREAIVEENG---IAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 354 ---~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~---i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
...+++..|+.+|+.++ .+++..+.+.+.+. ...++.+. ..+...+..++++|.|+..
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHhh
Confidence 34678999999999999 56777888887663 33333333 3444567788999999853
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.17 E-value=7e-10 Score=123.04 Aligned_cols=276 Identities=14% Similarity=0.114 Sum_probs=195.7
Q ss_pred CCchHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhccCchhHHHHH--hcCChHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 012413 173 EDLQPTVKICIDGLQSS--SVAIKRSAAAKLRLLAKNRSDNRVLIG--ESGAVPALVPLLKCS--DPWTQEHSVTALLNL 246 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~--~~~vr~~A~~~L~~La~~~~~~r~~i~--~~g~i~~Ll~lL~~~--~~~v~~~A~~aL~~L 246 (464)
..|...++.++..+.++ ++.+|..++.+|..++..-.. ..+. -...++.+...+.++ ++.+|..|+.+|.++
T Consensus 124 ~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~ 201 (876)
T 1qgr_A 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201 (876)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 46788999999999998 999999999999999865211 1111 134677788888876 689999999999998
Q ss_pred cCC-Cch-HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHH
Q 012413 247 SLH-ENN-KTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALT 323 (464)
Q Consensus 247 a~~-~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~ 323 (464)
... ... .........++.+..++.+++.+++..++.+|..+... ++.-........++.++..+.+.+..++..++.
T Consensus 202 ~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~ 281 (876)
T 1qgr_A 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIE 281 (876)
T ss_dssp GGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 753 111 00111123577778888888999999999999998764 222111222366888888888888999999999
Q ss_pred HHHHHhcCcch----------------------HHHHHHcCCHHHHHHhhcC-------CCHHHHHHHHHHHHHHhCCHh
Q 012413 324 TLYKLCSLKQN----------------------KERAVSAGAVRPLVGMLAG-------QGEGMAEKAMVVLSLLAGIAE 374 (464)
Q Consensus 324 aL~nL~~~~~~----------------------~~~iv~~g~v~~Lv~lL~~-------~~~~v~~~A~~aL~nLa~~~~ 374 (464)
.+..++..... ....+ ...++.++..+.. .+..++..|+.+|..++..-.
T Consensus 282 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~ 360 (876)
T 1qgr_A 282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc
Confidence 99988764210 00011 2356777777752 234678888999998884321
Q ss_pred hHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH-HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 375 GREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV-KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
..++ ...++.+...+.+.+..+|..|+++|+.++.... ..-.... ...++.|+..+.++++.||..|+|+|+.++
T Consensus 361 --~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~ 436 (876)
T 1qgr_A 361 --DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (876)
T ss_dssp --GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred --HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 1111 2456667777788899999999999999997542 2211211 347899999999999999999999999998
Q ss_pred cC
Q 012413 454 EP 455 (464)
Q Consensus 454 ~~ 455 (464)
+.
T Consensus 437 ~~ 438 (876)
T 1qgr_A 437 EL 438 (876)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-09 Score=119.10 Aligned_cols=276 Identities=13% Similarity=0.136 Sum_probs=191.9
Q ss_pred CchHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhccCchh-H--HHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhc
Q 012413 174 DLQPTVKICIDGLQSS-SVAIKRSAAAKLRLLAKNRSDN-R--VLIGESGAVPALVPLLKCS--DPWTQEHSVTALLNLS 247 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~-~~~vr~~A~~~L~~La~~~~~~-r--~~i~~~g~i~~Ll~lL~~~--~~~v~~~A~~aL~~La 247 (464)
.|...++.|+..+.++ ++.+|..++.+|..++..-... + ... ....++.+...+.++ ++.+|..|+.+|..+.
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTETSKAVRLAALNALADSL 209 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHG
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 4577888899999988 9999999999999998753211 0 011 123567777788886 8999999999999875
Q ss_pred CC-Cch-HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHH
Q 012413 248 LH-ENN-KTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTT 324 (464)
Q Consensus 248 ~~-~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~a 324 (464)
.. .+. .........++.|...+.+++..+|..++.+|..++... +.-........++.++..+.+.+..++..++.+
T Consensus 210 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~ 289 (861)
T 2bpt_A 210 IFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEF 289 (861)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 32 111 000011235677778888899999999999999987642 211111111456677778888899999999999
Q ss_pred HHHHhcCcch------------------HHHHHHcCCHHHHHHhhcCC-------CHHHHHHHHHHHHHHhCCHhhHHHH
Q 012413 325 LYKLCSLKQN------------------KERAVSAGAVRPLVGMLAGQ-------GEGMAEKAMVVLSLLAGIAEGREAI 379 (464)
Q Consensus 325 L~nL~~~~~~------------------~~~iv~~g~v~~Lv~lL~~~-------~~~v~~~A~~aL~nLa~~~~~~~~i 379 (464)
+..++..... ...++ ...+|.++..+... +..++..+..+|..++..-. ..+
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~ 366 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHI 366 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGG
T ss_pred HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhH
Confidence 9998774311 11122 34778888888642 24678889999998885211 011
Q ss_pred HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH-HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 380 VEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV-KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 380 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+ ...++.+.+.+.+.+..+|..|+++|+.++.... ..-.... ..+++.|+..+.++++.+|..++|+|+.+++.
T Consensus 367 ~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 367 L-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 1 1345666667778889999999999999996532 2211122 24788999999999999999999999998864
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-10 Score=124.19 Aligned_cols=274 Identities=13% Similarity=0.062 Sum_probs=194.0
Q ss_pred chHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhccCchhH-HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-C
Q 012413 175 LQPTVKICIDGLQSS--SVAIKRSAAAKLRLLAKNRSDNR-VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-E 250 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~--~~~vr~~A~~~L~~La~~~~~~r-~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~ 250 (464)
....++.+...+.++ +..+|..|+++|..+...-...- ........++.+...+.+.+++++..++.+|..++.. +
T Consensus 170 ~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH
Confidence 345677778888876 78999999999998875422110 0001113577778888888999999999999999863 3
Q ss_pred chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc----------------h---hhhh--ccCChHHHHHH
Q 012413 251 NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN----------------K---SSIG--ACGAIPPLVSL 309 (464)
Q Consensus 251 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~----------------~---~~i~--~~g~i~~Li~l 309 (464)
+.-........++.++..+.+.++.++..++.++..++..... + ..+. -...+|.+++.
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 329 (876)
T 1qgr_A 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (876)
T ss_dssp GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHH
Confidence 3222333346888999989899999999999999888754200 0 0000 02345667777
Q ss_pred hhc-------CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH--hhHHHHH
Q 012413 310 LIY-------GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA--EGREAIV 380 (464)
Q Consensus 310 L~~-------~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~--~~~~~i~ 380 (464)
|.. .+..+|+.|..+|..++..-.. .++. ..++.+...+.+.+..++..|+.+|+.++... +......
T Consensus 330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred hhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 752 3567999999999998773221 1222 36677778888888999999999999999542 2222222
Q ss_pred hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHh---HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 381 EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKN---RGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 381 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~---~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
...++.++..+.++++.+|..|+++|++++...+.. ...+ ..+++.|+..+.++ +.++..|+++|..+.+.
T Consensus 407 -~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 407 -IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999753321 1111 24577888888775 99999999999999864
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=124.84 Aligned_cols=194 Identities=15% Similarity=0.069 Sum_probs=156.9
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHH-HHhhcCChhhHHHHHHHHHHHhcC--cchHH
Q 012413 260 GAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLV-SLLIYGSSRGKKDALTTLYKLCSL--KQNKE 336 (464)
Q Consensus 260 g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li-~lL~~~~~~v~~~A~~aL~nL~~~--~~~~~ 336 (464)
..|.++++.|+++++..|..||++|.+|+.++..+..+...|+|..++ .+|.+.+..|+..|+++|+||+.. .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 356667788999999999999999999999888899999999988765 578889999999999999999974 57888
Q ss_pred HHHHcCCHHHHHHhhcCCC---------------------HHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhc
Q 012413 337 RAVSAGAVRPLVGMLAGQG---------------------EGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIED 394 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~---------------------~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~ 394 (464)
.+++.|++++|..++.... .++..+++.+|.+|| .+......+...++++.|+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 9999999999999885311 123456888999999 566777788889999999999964
Q ss_pred ---CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhh--hcCCHHHHHHHHHHHHHhh
Q 012413 395 ---GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALS--QTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 395 ---~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL--~s~~~~v~~~A~~aL~~L~ 453 (464)
....++..|+.+|..++..++.....+.+.|....+.-++ ...+...+..+++.|.++.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 3478999999999999999998888888876543333222 3344456778889998874
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=7.1e-10 Score=119.42 Aligned_cols=253 Identities=13% Similarity=0.077 Sum_probs=168.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~ 255 (464)
-++..+.+-|+++++.+|..|+++|+++... + +. ...++.+..+|++.++.+|..|+.++.++.. +++..
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~-~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-- 177 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----E-MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-- 177 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----H-HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----H-HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--
Confidence 4777888899999999999999999999843 1 22 3578889999999999999999999999986 34422
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhc---------------CChhhHH
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIY---------------GSSRGKK 319 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~---------------~~~~v~~ 319 (464)
.+.++.+..+|.+.++.++..|+++|..++.+. +....+ ...+|.++.+|.+ .++-.+.
T Consensus 178 ---~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~ 252 (618)
T 1w63_A 178 ---EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV 252 (618)
T ss_dssp ---GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred ---HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence 267888889999999999999999999998763 221122 2567888887764 3677788
Q ss_pred HHHHHHHHHhcCcch-HHHHHH-------------------------------------cCCHHHHHHhhcCCCHHHHHH
Q 012413 320 DALTTLYKLCSLKQN-KERAVS-------------------------------------AGAVRPLVGMLAGQGEGMAEK 361 (464)
Q Consensus 320 ~A~~aL~nL~~~~~~-~~~iv~-------------------------------------~g~v~~Lv~lL~~~~~~v~~~ 361 (464)
..+.+|+.++..+.. ...+.+ ..++..|..++.+.++.++..
T Consensus 253 ~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~ 332 (618)
T 1w63_A 253 RILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYV 332 (618)
T ss_dssp HHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 888888888874321 111000 013444555555555555555
Q ss_pred HHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHH
Q 012413 362 AMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRA 441 (464)
Q Consensus 362 A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v 441 (464)
|+.+|..++.... .++ ......++.++.+++..+|..|+.+|..++.... -. .+++.|...+.+.+.++
T Consensus 333 aL~~L~~i~~~~p---~~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~-----~iv~eL~~~l~~~d~e~ 401 (618)
T 1w63_A 333 ALTSLLKTVQTDH---NAV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IR-----GMMKELLYFLDSCEPEF 401 (618)
T ss_dssp HHHHHHHHHHHHH---HHH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--TH-----HHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHhhCH---HHH-HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HH-----HHHHHHHHHHHhCCHHH
Confidence 5555555553211 111 1234556666666666666666666666664321 11 13566666666666777
Q ss_pred HHHHHHHHHHhhc
Q 012413 442 KHKAETLLGYLRE 454 (464)
Q Consensus 442 ~~~A~~aL~~L~~ 454 (464)
|..+..+|+.++.
T Consensus 402 r~~~v~~I~~la~ 414 (618)
T 1w63_A 402 KADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777765
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-10 Score=125.70 Aligned_cols=270 Identities=12% Similarity=0.076 Sum_probs=186.1
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchh--HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC---
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDN--RVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE--- 250 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~--r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~--- 250 (464)
...++.++..+.++++.+|..++++|+.++..-... .... -...++.|+..++++ +.++..|+++|.+++..-
T Consensus 410 ~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~ 487 (861)
T 2bpt_A 410 HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEA 487 (861)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccc
Confidence 457788888999999999999999999888642110 0001 124678888888776 999999999999987531
Q ss_pred --c-hHHHHHhcCcHHHHHHHHccCC--HHHHHHHHHHHHHhcccccch-hhhhccCChHHHHHHhhcC-----------
Q 012413 251 --N-NKTLITNAGAIKSLVYVLKTGT--ETSKQNAACALMSLALIEENK-SSIGACGAIPPLVSLLIYG----------- 313 (464)
Q Consensus 251 --~-~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~a~~aL~~Ls~~~~~~-~~i~~~g~i~~Li~lL~~~----------- 313 (464)
+ ....+ ...++.|+.++.+.+ ..+|..++.+|..+....... .... ...+|.+++.+...
T Consensus 488 ~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~ 564 (861)
T 2bpt_A 488 TPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLE 564 (861)
T ss_dssp SSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHH
T ss_pred cchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChh
Confidence 1 11111 235778888887543 789999999999988653211 1111 23566777776532
Q ss_pred ----ChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCH-HHHHHHHHHHHHHhCCH--hhHHHHHhcCcH
Q 012413 314 ----SSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGE-GMAEKAMVVLSLLAGIA--EGREAIVEENGI 385 (464)
Q Consensus 314 ----~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~-~v~~~A~~aL~nLa~~~--~~~~~i~~~g~i 385 (464)
...++..++.+|.+++.. +....... ...++.++..+.+.+. .+++.++.+++.++... .....+ ...+
T Consensus 565 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~ 641 (861)
T 2bpt_A 565 DAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFS 641 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHH
Confidence 345778899999998873 32211112 2367788888887766 88999999999998432 222222 2378
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHh-HHHHHHcCChHHHHHhhhcCC--HHHHHHHHHHHHHhhcC
Q 012413 386 AALVEAIEDGSVKGKEFAVLTLLQLCAESVKN-RGLLVREGGIPPLVALSQTGS--VRAKHKAETLLGYLREP 455 (464)
Q Consensus 386 ~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~-~~~i~~~g~i~~Lv~lL~s~~--~~v~~~A~~aL~~L~~~ 455 (464)
+.|+..+.+.+..++..|+.+++.++...... ...+ ...++.|+..+.+++ +.+|..+..+++.+...
T Consensus 642 ~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 642 PYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp HHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 88999998888899999999999998643221 1111 346777888888764 78999999999888753
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-09 Score=111.70 Aligned_cols=234 Identities=13% Similarity=0.082 Sum_probs=164.0
Q ss_pred hHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhccCchhH-HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-Cc
Q 012413 176 QPTVKICIDGLQSS--SVAIKRSAAAKLRLLAKNRSDNR-VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-EN 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~--~~~vr~~A~~~L~~La~~~~~~r-~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~ 251 (464)
...++.++..|+++ ++.+|..|++++..+...-.... ......-.++.|...+.+.+++++..++.+|..++.. ++
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45777888889887 79999999999988653211110 0001111466677778889999999999999999863 22
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc------------------chhhhhc---cCChHHHHHHh
Q 012413 252 NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE------------------NKSSIGA---CGAIPPLVSLL 310 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~------------------~~~~i~~---~g~i~~Li~lL 310 (464)
.-......+.++.++..+++.++.++..+++++..++.... ....+.+ ...+|.+++.+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l 330 (462)
T 1ibr_B 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (462)
T ss_dssp GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence 11111112678888888999999999999999998875420 0000111 23456666666
Q ss_pred hc-------CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHh--hHHHHHh
Q 012413 311 IY-------GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE--GREAIVE 381 (464)
Q Consensus 311 ~~-------~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~--~~~~i~~ 381 (464)
.. .+..+|..|+.+|..|+..-.. .++ ...++.+...+.+.+..++..|+.+|+.++.... ..... -
T Consensus 331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l 406 (462)
T 1ibr_B 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-V 406 (462)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-T
T ss_pred HhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-H
Confidence 43 2457899999999999873221 222 2467788888888899999999999999995321 11111 1
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
..+++.++.++.++++.+|..|+++|++++..
T Consensus 407 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999964
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.7e-09 Score=121.42 Aligned_cols=340 Identities=12% Similarity=0.073 Sum_probs=219.6
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchh---------h
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFST---------E 165 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~---------~ 165 (464)
.+..+..|.+.+.| ++.+|..+..+|+.++..... . . +...+..++..+.+++... .
T Consensus 46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~-~-----------~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~ 112 (1230)
T 1u6g_C 46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-Y-Q-----------VETIVDTLCTNMLSDKEQLRDISSIGLKT 112 (1230)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-H-H-----------HHHHHHHHHHHTTCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-H-H-----------HHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 34667778888888 888999999999998764322 0 0 1111122244443332110 1
Q ss_pred HhhhcCCC---------CchHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHH
Q 012413 166 IIESISPE---------DLQPTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWT 235 (464)
Q Consensus 166 i~~~~~~~---------~~~~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v 235 (464)
+...+... .+...++.|+..+. ++++.++..|+.+|..++...+..-... -...++.|+..|.++++.+
T Consensus 113 i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~-~~~ll~~l~~~L~~~~~~v 191 (1230)
T 1u6g_C 113 VIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPRLAV 191 (1230)
T ss_dssp HHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHH
T ss_pred HHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHHHcCCcHHH
Confidence 22222222 25678899999998 5889999999999999885432211111 1346777888899999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHhcccccchhhhh--ccCChHHHHHHhhc
Q 012413 236 QEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGT-ETSKQNAACALMSLALIEENKSSIG--ACGAIPPLVSLLIY 312 (464)
Q Consensus 236 ~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~Ls~~~~~~~~i~--~~g~i~~Li~lL~~ 312 (464)
|..|+.+|+.++...... + -...++.|+..|...+ ..++..++.++..++..... .+. -...+|.++..+.+
T Consensus 192 R~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d 266 (1230)
T 1u6g_C 192 RKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNV 266 (1230)
T ss_dssp HHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcC
Confidence 999999999998753221 1 2346888888887653 46777888888888754211 121 14678999999999
Q ss_pred CChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCC-------------------------------------
Q 012413 313 GSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQ------------------------------------- 354 (464)
Q Consensus 313 ~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~------------------------------------- 354 (464)
.++.+|..++.++..++.. ++....++ ...++.++..+..+
T Consensus 267 ~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 345 (1230)
T 1u6g_C 267 DDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 345 (1230)
T ss_dssp CCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC------------------------------------C
T ss_pred CCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccccccccc
Confidence 9999999999999999873 32211122 12445554444210
Q ss_pred CHHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH----------------h
Q 012413 355 GEGMAEKAMVVLSLLAGI-AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK----------------N 417 (464)
Q Consensus 355 ~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~----------------~ 417 (464)
...++..|+.+|..++.. ++.-..+. ...++.++..+.+.+..+|..++.++..++..... .
T Consensus 346 ~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (1230)
T 1u6g_C 346 SWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP 424 (1230)
T ss_dssp TTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCH
T ss_pred CHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccch
Confidence 123577888999988853 22122222 45678888888888999999999999888742100 0
Q ss_pred HHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 418 RGLLVR--EGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 418 ~~~i~~--~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
...+.. ...++.+...+++.++.+|..+..+|+.+.+..
T Consensus 425 ~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 425 LTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 011111 234566666688899999999999999888753
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-07 Score=102.60 Aligned_cols=256 Identities=14% Similarity=0.091 Sum_probs=183.4
Q ss_pred hHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchH
Q 012413 176 QPTVKICIDGL--QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L--~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~ 253 (464)
+..++.+.++| .+.++.||+.|+.++..+...+++. +...+.++.|..+|.+.++.++..|+.+|..++.+...
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~- 220 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE- 220 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH-
Confidence 35666667888 8899999999999999999876643 22258899999999999999999999999999864321
Q ss_pred HHHHhcCcHHHHHHHHc----cC-------------CHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHh----
Q 012413 254 TLITNAGAIKSLVYVLK----TG-------------TETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLL---- 310 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~----~~-------------~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL---- 310 (464)
.+ ...+|.++..|. .+ ++-++...+..|..++.. ++.+..+.+ .++.++..+
T Consensus 221 -~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ 295 (621)
T 2vgl_A 221 -EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPP 295 (621)
T ss_dssp -HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCC
T ss_pred -HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCc
Confidence 11 134555554443 22 678999999998888753 233333322 233333322
Q ss_pred -----hcCCh--hhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcC
Q 012413 311 -----IYGSS--RGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEEN 383 (464)
Q Consensus 311 -----~~~~~--~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g 383 (464)
.+.+. .+...++.++..+...++... .++..|..+|.+.+++++.-|+.+|..++........+ ..
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~ 368 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KT 368 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HT
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HH
Confidence 12233 778888888888864333222 26678889998889999999999999999643222222 24
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
....++.+++ +++..++..|+..|..++.. .+... ++..|...+...+.+.+..+..+++.++.
T Consensus 369 ~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 369 HIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 5778888998 99999999999999999853 33333 46678888888899999999999998874
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-09 Score=123.53 Aligned_cols=271 Identities=11% Similarity=0.031 Sum_probs=195.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
..+..|+..+.++|+++|..|...|.+..+.....-..-.....++.|+..|.+.++.+|..|+.+|+.++..-.. ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~- 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ- 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH-
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH-
Confidence 4677888899999999999999999877654211100011225678899999999999999999999999874322 11
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccch------hhhhccCChHHHHHHhh-cCChhhHHHHHHHHHHHh
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENK------SSIGACGAIPPLVSLLI-YGSSRGKKDALTTLYKLC 329 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~------~~i~~~g~i~~Li~lL~-~~~~~v~~~A~~aL~nL~ 329 (464)
-...++.|+..|.++++.+|..++.+|..++..-... ..-.....+|.|+..+. +++..++..|+.+|..++
T Consensus 84 -~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 84 -VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp -HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1236778888888999999999999999987542111 11122456889999998 478899999999999998
Q ss_pred cC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCC-HHHHHHHHHHH
Q 012413 330 SL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGS-VKGKEFAVLTL 407 (464)
Q Consensus 330 ~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL 407 (464)
.. ++...... ...++.|+..|.+++..++..|+.+|+.++..... .+ -...++.|++.+.+.+ ..++..++.++
T Consensus 163 ~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l 238 (1230)
T 1u6g_C 163 SRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSMSTTRTYIQCI 238 (1230)
T ss_dssp HHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred HHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 52 22111111 23667788888888899999999999999954321 11 2356888998887543 46778889999
Q ss_pred HHHhhcCHHhHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 408 LQLCAESVKNRGLLVR--EGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 408 ~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
+.++...+. .+.. ...++.++..+.+.++++|..+.+++..+.+.-+
T Consensus 239 ~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 239 AAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence 998864322 1111 4678899999998899999999999999887543
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-07 Score=102.20 Aligned_cols=216 Identities=15% Similarity=0.164 Sum_probs=153.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc----C---C----------CHHHHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK----C---S----------DPWTQEHS 239 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~----~---~----------~~~v~~~A 239 (464)
..++.+.++|.+.++.|+..|+.+|..++.+++.. + ...+|.++..|. . + +|+.+...
T Consensus 187 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~i 261 (621)
T 2vgl_A 187 DWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKL 261 (621)
T ss_dssp SCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHH
T ss_pred hHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHH
Confidence 46667788899999999999999999999876542 1 134454444332 2 1 79999999
Q ss_pred HHHHHHhcCCC--chHHHHHhcCcHHHHHHHHc---------cCCH--HHHHHHHHHHHHhcccccchhhhhccCChHHH
Q 012413 240 VTALLNLSLHE--NNKTLITNAGAIKSLVYVLK---------TGTE--TSKQNAACALMSLALIEENKSSIGACGAIPPL 306 (464)
Q Consensus 240 ~~aL~~La~~~--~~~~~i~~~g~i~~Lv~lL~---------~~~~--~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L 306 (464)
+..|..++..+ +.+..+.+ .++.++..+. +.+. .+...++.++..+...++... .++..|
T Consensus 262 l~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L 334 (621)
T 2vgl_A 262 LRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQL 334 (621)
T ss_dssp HHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHH
Confidence 99999988642 33333333 3444443321 2233 888899999999864333222 357788
Q ss_pred HHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcH
Q 012413 307 VSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLA-GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGI 385 (464)
Q Consensus 307 i~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i 385 (464)
..+|.+.++.+|..++.+|..++...+... ++ ....+.++..|. +++..++..++.+|..|+.. .+.. ..+
T Consensus 335 ~~~L~~~~~niry~aL~~l~~l~~~~~~~~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~-----~Iv 406 (621)
T 2vgl_A 335 GQFLQHRETNLRYLALESMCTLASSEFSHE-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQ-----QIV 406 (621)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHTTCTTTHH-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHH-----HHH
T ss_pred HHHhcCCCcchHHHHHHHHHHHHhccCcHH-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHH-----HHH
Confidence 899988899999999999999988543222 23 236778888888 89999999999999999853 2322 345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 386 AALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 386 ~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
..|.+++.+.+.+.+..++.+++.++.
T Consensus 407 ~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 407 AEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 677788888888888888888888874
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-10 Score=96.28 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=92.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
.+.++.++..|+++++.+|..|+++|..+.. ..++.|+.+|+++++.+|..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 4567777888999999999999988865432 237899999999999999999999988762
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHH
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYK 327 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~n 327 (464)
..+++.|+.+|+++++.+|..|+++|..+. +..+++.|+.+|.++++.++..|+.+|.+
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 236899999999999999999999999873 34468999999998899999999998865
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-09 Score=93.37 Aligned_cols=122 Identities=20% Similarity=0.199 Sum_probs=96.8
Q ss_pred ccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHH
Q 012413 299 ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREA 378 (464)
Q Consensus 299 ~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 378 (464)
....++.|+.+|.++++.+|..|+++|+.+.. ..++.|+.+|.++++.++..|+++|+++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 35678899999999999999999999886532 136899999999999999999999998874
Q ss_pred HHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 379 IVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 379 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
...++.|+.++.++++.+|..|+++|+.+.. ..+++.|+.+++++++.||..|.++|+.|
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 3468999999999999999999999999973 23588999999999999999999999764
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.4e-08 Score=91.72 Aligned_cols=181 Identities=12% Similarity=0.033 Sum_probs=138.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcCCC-chHHHHHhc
Q 012413 182 CIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSLHE-NNKTLITNA 259 (464)
Q Consensus 182 Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~~~-~~~~~i~~~ 259 (464)
+.+.+.+.++..|..|+..|..+....+...... -...++.|..++. +.+..++..|+.+|+.|+..- ..-.. .-.
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~~ 97 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YAS 97 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HHH
Confidence 5677889999999999999999887633211100 0245777888894 899999999999999999632 11111 123
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-C-cc-hHH
Q 012413 260 GAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-L-KQ-NKE 336 (464)
Q Consensus 260 g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~-~~-~~~ 336 (464)
..+|.|+..+.+.+..+|..++.+|..+...... ...++.+...|.+.++.+|..++..|..+.. + ++ ...
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 3789999999999999999999999998764321 1247888888999999999999999999654 3 22 112
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
..+. ..+|.|+.+|.+....+|..|..+|+.|+.
T Consensus 172 ~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 172 KLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2233 488999999999999999999999998884
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.75 E-value=8.6e-07 Score=97.84 Aligned_cols=241 Identities=15% Similarity=0.098 Sum_probs=176.1
Q ss_pred HHHHHHHHhcCCCC--------HHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 012413 177 PTVKICIDGLQSSS--------VAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~--------~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~ 248 (464)
+++..|...|.+.+ +.+|..|+..|+.+..++. +..+++.|.++|.+++..++..|+.+|+.+-.
T Consensus 429 ~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~v 501 (963)
T 4ady_A 429 DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc
Confidence 46677777776554 6788889989987654422 12457789999988888888899999987743
Q ss_pred CCchHHHHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-CChhhHHHHHHHHH
Q 012413 249 HENNKTLITNAGAIKSLVYVL-KTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-GSSRGKKDALTTLY 326 (464)
Q Consensus 249 ~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~ 326 (464)
...+. .++..|+..+ .+.+..++..++.+|+.+.. .+...++.+++.|.. .++-+|..++.+++
T Consensus 502 GTgn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~alg 567 (963)
T 4ady_A 502 GTGKP------EAIHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIA 567 (963)
T ss_dssp TCCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ccCCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33222 2455566654 45688999999999998743 445578899998875 58888888888887
Q ss_pred HHhcCcchHHHHHHcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHH-hcCCHHHHHHHH
Q 012413 327 KLCSLKQNKERAVSAGAVRPLVGML-AGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAI-EDGSVKGKEFAV 404 (464)
Q Consensus 327 nL~~~~~~~~~iv~~g~v~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~ 404 (464)
--.....+.. +++.|+..+ .+.+..++..|+.+|+.++..++ ..++.++.++ ++.++.+|..|+
T Consensus 568 lAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAa 633 (963)
T 4ady_A 568 LAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTA 633 (963)
T ss_dssp HHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHH
T ss_pred HHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHH
Confidence 6555444422 455555554 45678899999999999874321 3567777755 468999999999
Q ss_pred HHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCC
Q 012413 405 LTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 405 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~ 459 (464)
.+|+.++..++. ..++..|..++++.++.|+..|..+|+.+.....+.
T Consensus 634 lALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 634 FALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp HHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred HHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence 999999976532 225778888999999999999999999998765544
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.1e-07 Score=82.31 Aligned_cols=220 Identities=13% Similarity=0.090 Sum_probs=160.3
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCch-hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSD-NRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~-~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~ 253 (464)
...+..|+..|.+.|+.++..++.+|..+-+.-+. .+.... ...++.++.++++.+..+...|..+|..|..+ +-..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 45778889999999999999999999999887433 333333 47899999999999999999999999999875 4333
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
..+.. .+..|..+++++++-++.+++..|..|...... .+.+..+..++.+.+.+++..++.+|.+++...+
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 33333 567788899999999999999999999322222 2346888899988999999999999999988443
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHh--cCCHHHHHHHHHH
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIE--DGSVKGKEFAVLT 406 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~a 406 (464)
.... -.+.+..+-.+|++.++.+++.|+.+|..+...+--...+.+--.+-..+.-+. .+.+.++..|-..
T Consensus 183 D~~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 183 DSGH--LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp SCCC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred CHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 2111 123556677889999999999999999999976432212222122333333332 3556666655443
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=98.71 E-value=4.7e-07 Score=92.47 Aligned_cols=268 Identities=13% Similarity=0.112 Sum_probs=183.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChH--HHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHhcC-
Q 012413 185 GLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVP--ALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITNAG- 260 (464)
Q Consensus 185 ~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~--~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g- 260 (464)
.+..+++.....+..++..++.......+.+ ...+. .++..|+. .+...+..++.+|..|...++.|..+.+.+
T Consensus 133 ~~~~dd~~~ll~a~~l~~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~ 210 (480)
T 1ho8_A 133 SLKGDFQTVLISGFNVVSLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEK 210 (480)
T ss_dssp CSCSSHHHHHHHHHHHHHHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHH
T ss_pred HhcccchHHHHHHHHHHHHHhccCCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHccc
Confidence 3445666677777777777764433321111 11222 45556665 345667789999999999999999998754
Q ss_pred -cHHHHHHHHcc---------------C--CHHHHHHHHHHHHHhcccccchhhhhccCCh--HHHHHHhhcC-ChhhHH
Q 012413 261 -AIKSLVYVLKT---------------G--TETSKQNAACALMSLALIEENKSSIGACGAI--PPLVSLLIYG-SSRGKK 319 (464)
Q Consensus 261 -~i~~Lv~lL~~---------------~--~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i--~~Li~lL~~~-~~~v~~ 319 (464)
.+|.++..++. + ...++.+++.+++-|+..++....+...+.. +.|+..++.. -..+.+
T Consensus 211 ~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvR 290 (480)
T 1ho8_A 211 KFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSR 290 (480)
T ss_dssp HHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHH
T ss_pred chhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHH
Confidence 36777655442 1 3567899999999999998877777766643 6777777764 688999
Q ss_pred HHHHHHHHHhcCc-ch----HH-HHHHcCCHHHHHHhhcC---CCHHHHHHHHHHHHH-------HhC------------
Q 012413 320 DALTTLYKLCSLK-QN----KE-RAVSAGAVRPLVGMLAG---QGEGMAEKAMVVLSL-------LAG------------ 371 (464)
Q Consensus 320 ~A~~aL~nL~~~~-~~----~~-~iv~~g~v~~Lv~lL~~---~~~~v~~~A~~aL~n-------La~------------ 371 (464)
-++.+|.|+.... .. .. .++..++ +.++..|.. .++++.+..-..... ++.
T Consensus 291 v~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~ 369 (480)
T 1ho8_A 291 LCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKL 369 (480)
T ss_dssp HHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCC
Confidence 9999999998854 11 12 2333445 556666643 245543332222111 111
Q ss_pred ---CHhhH---------HHHHhc--CcHHHHHHHHhc----------CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCCh
Q 012413 372 ---IAEGR---------EAIVEE--NGIAALVEAIED----------GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGI 427 (464)
Q Consensus 372 ---~~~~~---------~~i~~~--g~i~~Lv~lL~~----------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i 427 (464)
+|.++ ..+-+. ..+..|+++|.+ .++.+..-|+.=|+.++.+.|..+..+.+.|+=
T Consensus 370 L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K 449 (480)
T 1ho8_A 370 LCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGK 449 (480)
T ss_dssp CCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHH
T ss_pred cccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcH
Confidence 22222 222222 268999999983 368889999999999999999999999999999
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 428 PPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 428 ~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+.+++++.+++++||..|..++..+..+
T Consensus 450 ~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 450 ADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887644
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-07 Score=88.26 Aligned_cols=182 Identities=14% Similarity=0.046 Sum_probs=139.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhh-cCChhhHHHHHHHHHHHhcC-cchHHHHH
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLI-YGSSRGKKDALTTLYKLCSL-KQNKERAV 339 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~-~~~~~v~~~A~~aL~nL~~~-~~~~~~iv 339 (464)
+.+...+.+.+...|..|+..|..+... +.....-. ...++.|..++. +.+..++..|+.+|+.|+.. .......+
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3578888999999999999999998764 32111000 234677888884 88999999999999999973 22222333
Q ss_pred HcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-CHH--
Q 012413 340 SAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE-SVK-- 416 (464)
Q Consensus 340 ~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~-~~~-- 416 (464)
. ..+|.|+..+.+....++..|..+|..++..... ...++.|...+++.++.+|..++..|+.+... .+.
T Consensus 97 ~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 S-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp H-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 2 3889999999999999999999999999864321 23578888999999999999999999996543 232
Q ss_pred hHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 417 NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 417 ~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
....+ ...++.|+.++.+.+++||..|..+|..+..
T Consensus 170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 12222 2578999999999999999999999998875
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.9e-06 Score=74.47 Aligned_cols=212 Identities=19% Similarity=0.142 Sum_probs=164.9
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcC-CCchH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSL-HENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~-~~~~~ 253 (464)
...++.++..|.++-+.|+.+|+..+..++...++.... .+..|+.+++. +........+.+++.++. .|+.-
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 468888899999999999999999999999998776654 34567777654 667777888899999987 34432
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
.+.+|.|..-..-+++..+.+...+|..++.. ++.-.. .+..+..++.++|..-+..|+..+..+..+
T Consensus 106 -----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alGen- 174 (253)
T 2db0_A 106 -----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMGEN- 174 (253)
T ss_dssp -----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-
T ss_pred -----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHhcc-
Confidence 23677788878889999999999999998764 443333 367788899998988888888877766553
Q ss_pred chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 333 QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 333 ~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
.-+.+ ..-+|.|+.+|.+.+.-++..|..+|.++| .++..|..+. .-++-+.+.+..++......|+.|.
T Consensus 175 --~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 175 --SFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp --THHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred --Ccccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 22223 237899999999999999999999999999 5666555443 3566778889999999888888876
Q ss_pred h
Q 012413 412 A 412 (464)
Q Consensus 412 ~ 412 (464)
.
T Consensus 246 l 246 (253)
T 2db0_A 246 L 246 (253)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.62 E-value=5.6e-06 Score=91.38 Aligned_cols=240 Identities=11% Similarity=0.048 Sum_probs=166.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL-KCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL-~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
.+++.|...|.+.+..++..|+.+|+.+-.++. +..++..|+..+ ++.+..+++.++.+|+.+....
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTg-------n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~----- 539 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTG-------KPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR----- 539 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-------CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC-----
Confidence 455666777777777777788888876633311 112455566654 4467889999999999876532
Q ss_pred HHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcc
Q 012413 256 ITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~ 333 (464)
...++.+++.|.. .++.+|..++.+++--.....+. .+|+.|+..+.+ .+..+|+.|+.+|+.+....+
T Consensus 540 ---~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 540 ---QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp ---GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred ---hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 2467888888764 68888888888887543333322 256767766654 577899999999998766432
Q ss_pred hHHHHHHcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGML-AGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
..++.++.+| .+.++.+|..|+.+|+.++..... ..++..|..+.++.+..|+..|+.+|+.++.
T Consensus 611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 3677777755 567899999999999999842211 2357788888899999999999999999997
Q ss_pred cCHHhH-HHHHHcCChHHHHHhhhc--CCHHHHHHHHHHHHHhh
Q 012413 413 ESVKNR-GLLVREGGIPPLVALSQT--GSVRAKHKAETLLGYLR 453 (464)
Q Consensus 413 ~~~~~~-~~i~~~g~i~~Lv~lL~s--~~~~v~~~A~~aL~~L~ 453 (464)
...... ..+ .+.+..|.....+ .++..+..|.-|.+.+.
T Consensus 677 gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 677 QQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp TCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred CCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 643320 011 1234456666654 46789999888887764
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.5e-06 Score=76.44 Aligned_cols=189 Identities=15% Similarity=0.107 Sum_probs=148.6
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCC
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~ 174 (464)
+|+++.-|..++++ ++.++-++..+|+++...-.+. + +.. .
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~-------------------------l-----~~~--------~ 72 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSD-------------------------L-----RMM--------V 72 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHH-------------------------H-----HHH--------H
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-------------------------c-----cHH--------H
Confidence 67899999999998 8999999999999872111000 0 011 1
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
+...++.++..+++.|..+...|+++|..+-.+.+-..+.+. ..+..|..++++.++-++..|+..|+.+---...
T Consensus 73 ~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-- 148 (265)
T 3b2a_A 73 LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-- 148 (265)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC--
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch--
Confidence 246888889999999999999999999999988777666655 3678889999999999999999999999221222
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
.+.+..+..++.+.+..++..+..+|.+++..++.+..+ .+.+..+-.+|.++|+.++..|+.+|..+...+
T Consensus 149 ----~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 149 ----KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp ----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ----HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 235677889999999999999999999998865443322 334666778999999999999999999998865
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.57 E-value=9.1e-06 Score=72.16 Aligned_cols=219 Identities=16% Similarity=0.123 Sum_probs=162.2
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhccc-ccc
Q 012413 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVL-KTGTETSKQNAACALMSLALI-EEN 293 (464)
Q Consensus 217 ~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~-~~~ 293 (464)
+...++.++.+|.++-..++.+|+.++..++.. ++.... .+..|+-++ +++...+-...+.+++.++.. ++.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 456788899999999999999999999999984 555444 344455554 456677778888889888754 332
Q ss_pred hhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC
Q 012413 294 KSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI 372 (464)
Q Consensus 294 ~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 372 (464)
-. +.+|.|..-..-++++++.+...+|..++. +|.... +++..+..++.+++..-+..|+..++.|..+
T Consensus 105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 22 236777777777899999999999999988 555333 3556788889988876677777777766643
Q ss_pred HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 373 AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 373 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
. ..-+ .--++.|..+|.+.+.-+|..|+.+|.+++..++..|..+ ..-++-+.+.++.|++....+|..|
T Consensus 175 ~---~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 175 S---FKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp T---HHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred C---cccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 2 1111 2458999999999999999999999999999998876654 3345556778899999999999999
Q ss_pred hcCCCCCC
Q 012413 453 REPRQEGP 460 (464)
Q Consensus 453 ~~~~~~~~ 460 (464)
.--.++.+
T Consensus 245 ~l~e~~~~ 252 (253)
T 2db0_A 245 LLLEGHSS 252 (253)
T ss_dssp HHC-----
T ss_pred HHHhcccC
Confidence 87666654
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.3e-07 Score=85.21 Aligned_cols=188 Identities=7% Similarity=-0.001 Sum_probs=136.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHH-HhccCchhHHHHHh-cCChHHHHHhh-cCCCHHHHHHHHHHHHHhcCC---CchHHHH
Q 012413 183 IDGLQSSSVAIKRSAAAKLRL-LAKNRSDNRVLIGE-SGAVPALVPLL-KCSDPWTQEHSVTALLNLSLH---ENNKTLI 256 (464)
Q Consensus 183 v~~L~s~~~~vr~~A~~~L~~-La~~~~~~r~~i~~-~g~i~~Ll~lL-~~~~~~v~~~A~~aL~~La~~---~~~~~~i 256 (464)
-..+.+.++..|..|+..|.. +..+.+.......+ ...+..|.+.+ ++.++.++..|+.+|+.|+.. +......
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 456689999999999999999 87553432210011 23477788888 789999999999999999852 1221011
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch-
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN- 334 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~- 334 (464)
. ...+|.++..+++....++..+..+|..++... .....-.-...++.|+..|.+.++.+|..++.+|..++.....
T Consensus 102 ~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 102 V-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp H-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 1 227899999999999999999999998887642 1100000112577888889999999999999999999873321
Q ss_pred ---HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 335 ---KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 335 ---~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
....+....+|.|..++.+.+..+|..|..+|+.++.
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1122325689999999999999999999999998773
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.7e-06 Score=81.86 Aligned_cols=250 Identities=10% Similarity=-0.013 Sum_probs=161.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
......++++.+.|...|+-.--.+..++...++. + =++..|.+=++++++-+|-.|+++|+++...+-. +
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~-~-- 138 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTML-Q-- 138 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH-H--
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH-H--
Confidence 34455578899999999999998888888774332 2 2567788888899999999999999999754321 1
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHH
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKE 336 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 336 (464)
...+.+.+.|.+.++.+|..|+.+...|.... .+ ++ .+.++.+-+++.+.++.+..+|+.+|..+..++..
T Consensus 139 ---~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe-~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~-- 209 (355)
T 3tjz_B 139 ---AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FD-VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL-- 209 (355)
T ss_dssp ---HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HH-HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--
T ss_pred ---HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HH-HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--
Confidence 25667888999999999999999999986542 12 22 25789999999999999999999999999875421
Q ss_pred HHHHcCCHHHHHHhhcCC---CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 337 RAVSAGAVRPLVGMLAGQ---GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~---~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
++..|+..+... ++-.+..-+..+..++..++ .-.....++.|..+|++.++-|...|+.++..+...
T Consensus 210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~---~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~ 280 (355)
T 3tjz_B 210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED---GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC 280 (355)
T ss_dssp ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC----
T ss_pred ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Confidence 334445544432 22223333333333332110 011234566677777888999999999999998652
Q ss_pred CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCC
Q 012413 414 SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 414 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~ 458 (464)
... + -..++..|..++.++++.+|..|...|..+....++
T Consensus 281 ~~~----~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 281 SAK----E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp ------------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred CHH----H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence 211 1 134578888899999999999999888888776554
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=6e-06 Score=78.37 Aligned_cols=190 Identities=9% Similarity=0.032 Sum_probs=137.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-hccc-ccchhhhhc-cCChHHHHHHh-hcCChhhHHHHHHHHHHHhcC-c-chHH-H
Q 012413 265 LVYVLKTGTETSKQNAACALMS-LALI-EENKSSIGA-CGAIPPLVSLL-IYGSSRGKKDALTTLYKLCSL-K-QNKE-R 337 (464)
Q Consensus 265 Lv~lL~~~~~~v~~~a~~aL~~-Ls~~-~~~~~~i~~-~g~i~~Li~lL-~~~~~~v~~~A~~aL~nL~~~-~-~~~~-~ 337 (464)
+...+.+.+..-|..|+..|.. +... ++......+ ...+..|.+.+ .+.+..++..|+.+|+.|+.. . .... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5567788999999999999999 8642 221110111 23466777888 678999999999999999862 1 2222 2
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 338 AVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 338 iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
.... .+|.++..+.+....++..+..+|-.++.. +.....-.-...++.|+..|++.++.+|..++.+|..+....+.
T Consensus 101 y~~~-llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSL-VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHH-HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 3322 789999999999999999999999888842 11000000113677888999999999999999999999865442
Q ss_pred h-HH--HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 417 N-RG--LLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 417 ~-~~--~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
. .. .......++.|..++.+.++.||..|..+|..+.+.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 1 11 111257899999999999999999999999987753
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.28 E-value=9.2e-05 Score=73.64 Aligned_cols=209 Identities=11% Similarity=-0.006 Sum_probs=146.2
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhh
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG 298 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~ 298 (464)
.....+++++.+++..+++-.-..+.+++..++.. + =++..|.+=++++++-+|-.|+.+|+++...+ .-+.
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-m~~~-- 139 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST-MLQA-- 139 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-THHH--
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-HHHH--
Confidence 45566788999999999999999999998864321 1 25677888889999999999999999985432 1111
Q ss_pred ccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHH
Q 012413 299 ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREA 378 (464)
Q Consensus 299 ~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 378 (464)
..+.+-+.|.+.++.||+.|+-+..+|....+. ++ .+.+..+-+++.+.++.++.+|+.+|..+...+.
T Consensus 140 ---l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~---- 208 (355)
T 3tjz_B 140 ---IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR---- 208 (355)
T ss_dssp ---HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH----
T ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch----
Confidence 356677888899999999999999999874322 23 3688999999999999999999999999986431
Q ss_pred HHhcCcHHHHHHHHhcC---CHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 379 IVEENGIAALVEAIEDG---SVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 379 i~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
..+..|+..+... ++..+..-+..+..++..+ +. .....++.|...|++.++.|...|++++-.+..
T Consensus 209 ----~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 209 ----LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp ----HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 1455556666543 4666666666665665443 22 123567788888899999999999999988876
Q ss_pred C
Q 012413 455 P 455 (464)
Q Consensus 455 ~ 455 (464)
.
T Consensus 280 ~ 280 (355)
T 3tjz_B 280 C 280 (355)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=98.01 E-value=8e-05 Score=76.12 Aligned_cols=231 Identities=16% Similarity=0.088 Sum_probs=158.2
Q ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcC--ChHHHHHhhcC-----------------CCHHHHHHHH
Q 012413 181 ICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESG--AVPALVPLLKC-----------------SDPWTQEHSV 240 (464)
Q Consensus 181 ~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g--~i~~Ll~lL~~-----------------~~~~v~~~A~ 240 (464)
.++..|.. .+.+.+.-++.+|..+... +..|..+.+.+ .+++++..++. ....++..++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 34555555 3456666789999888887 78888887643 36667654431 1357789999
Q ss_pred HHHHHhcCCCchHHHHHhcCcH--HHHHHHHccC-CHHHHHHHHHHHHHhcccc-cc-----hhhhhccCChHHHHHHhh
Q 012413 241 TALLNLSLHENNKTLITNAGAI--KSLVYVLKTG-TETSKQNAACALMSLALIE-EN-----KSSIGACGAIPPLVSLLI 311 (464)
Q Consensus 241 ~aL~~La~~~~~~~~i~~~g~i--~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~-~~-----~~~i~~~g~i~~Li~lL~ 311 (464)
.++.-|+.+++....+...+.. +.|+..++.. -+.+.+-++.+|.|+.... .. .+.++..++ +++++.|.
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 9999999998877777777644 6677777764 6889999999999988653 11 222333343 55666665
Q ss_pred cC---ChhhHHHHHHHH-------HHHh---------------cCcchH-HHHHH----------cCCHHHHHHhhcC--
Q 012413 312 YG---SSRGKKDALTTL-------YKLC---------------SLKQNK-ERAVS----------AGAVRPLVGMLAG-- 353 (464)
Q Consensus 312 ~~---~~~v~~~A~~aL-------~nL~---------------~~~~~~-~~iv~----------~g~v~~Lv~lL~~-- 353 (464)
.. |+++....-.+. ..++ -+|..+ +.|.. ...+..|+.+|.+
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 43 555444322211 1112 122222 13322 2357889999973
Q ss_pred --------CCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 354 --------QGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 354 --------~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
.++.+..-||.=|+.++ ..|.++..+-+-|+=..++++|.+++++|+.+|+.|+..+..+
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 24566777788888888 5788888888899999999999999999999999999887653
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00019 Score=70.02 Aligned_cols=151 Identities=17% Similarity=0.091 Sum_probs=127.1
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHH-HhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh-
Q 012413 304 PPLVSLLIYGSSRGKKDALTTLYK-LCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE- 381 (464)
Q Consensus 304 ~~Li~lL~~~~~~v~~~A~~aL~n-L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~- 381 (464)
..+++-|.+.+...++.++.-|.. +..+......|+..+|+..|+.++...+...+.+++.+|.+|..+..+-..+++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 455666777888889999999998 556788999999999999999999999999999999999999999888877775
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc----------CChHHHHHhhh---cCCHHHHHHHHHH
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVRE----------GGIPPLVALSQ---TGSVRAKHKAETL 448 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~----------g~i~~Lv~lL~---s~~~~v~~~A~~a 448 (464)
...|..+..++.+....+...|+..|..++..++.+...+.++ .-.+.|+.+|+ +.+.+++..|...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 4589999999999889999999999999998876555444332 13789999998 6788999998888
Q ss_pred HHHhhc
Q 012413 449 LGYLRE 454 (464)
Q Consensus 449 L~~L~~ 454 (464)
+..+-.
T Consensus 281 IN~lL~ 286 (339)
T 3dad_A 281 INKTLA 286 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766543
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00052 Score=66.96 Aligned_cols=181 Identities=12% Similarity=0.056 Sum_probs=137.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH-hcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHH-c
Q 012413 264 SLVYVLKTGTETSKQNAACALMS-LALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVS-A 341 (464)
Q Consensus 264 ~Lv~lL~~~~~~v~~~a~~aL~~-Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~-~ 341 (464)
.+++-|.+.+...+..++.-|.. ++.+.+....++..+|+..|+.+....+...+..++.+|.+|..+..+..-++. .
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34556667777888888888988 666778888999999999999999999999999999999999999888777774 5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHHHhcC----------cHHHHHHHHh---cCCHHHHHHHHHHH
Q 012413 342 GAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEEN----------GIAALVEAIE---DGSVKGKEFAVLTL 407 (464)
Q Consensus 342 g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g----------~i~~Lv~lL~---~~~~~v~~~A~~aL 407 (464)
..|..+..++.+....+.+.|+.+|..++.+ +.+...+.++- -.+.|+.+|+ +.+..++.+|...|
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 5789999999988899999999999999954 33443333211 2789999998 67899999988888
Q ss_pred HHHhhcCH--HhHH----HHHHcCChHHHHHhhhcC--CHHHHHH
Q 012413 408 LQLCAESV--KNRG----LLVREGGIPPLVALSQTG--SVRAKHK 444 (464)
Q Consensus 408 ~~L~~~~~--~~~~----~i~~~g~i~~Lv~lL~s~--~~~v~~~ 444 (464)
-.+....+ +.+. .+.+.|.-..+...+... +++++++
T Consensus 282 N~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 282 NKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 77765533 2222 233445445666667664 5666655
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.002 Score=71.96 Aligned_cols=270 Identities=10% Similarity=0.054 Sum_probs=182.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc---hH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHEN---NK 253 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~---~~ 253 (464)
..++.+++.+...+..-+..++..+..+..+....+ ....+.+..|...+.+.... +.|+.++..|+.... ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 455556666766555556777878877766432211 11236777888888774434 999999999996432 11
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCS 330 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~ 330 (464)
..+. .+.+|.++..+.+....+|..|..++..+... ++.. ...+|.|+..|.+. ....+..|+.++..|+.
T Consensus 90 e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 90 EPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp HHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred ccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 2221 25788888998888999999888888777543 2222 33589999999776 57899999999999997
Q ss_pred CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC---CH-------hhHHHHHhcC-----------------
Q 012413 331 LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG---IA-------EGREAIVEEN----------------- 383 (464)
Q Consensus 331 ~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~---~~-------~~~~~i~~~g----------------- 383 (464)
....+-...-...+|.+-..+.+..+++...|..++..+|. +. ...+.+.+..
T Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~ 243 (986)
T 2iw3_A 164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAE 243 (986)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSC
T ss_pred HhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEee
Confidence 43222111224589999999999999999999988888874 21 1122222111
Q ss_pred --------cHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--CHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHh
Q 012413 384 --------GIAALVEAIEDGSVKGKEFAVLTLLQLCAE--SVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYL 452 (464)
Q Consensus 384 --------~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~--~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L 452 (464)
.+|.|..-|.+.+..+++.++.++.|||.- ++.....+. -..+|.|.+.... .+|++|+.|..|+..|
T Consensus 244 v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 244 VTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp CCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 245555566667888999999999999974 444333332 2456666665544 5899999999999999
Q ss_pred hcCCC
Q 012413 453 REPRQ 457 (464)
Q Consensus 453 ~~~~~ 457 (464)
.+...
T Consensus 323 ~~~~~ 327 (986)
T 2iw3_A 323 RRVGN 327 (986)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 66443
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.82 E-value=3.6e-06 Score=79.59 Aligned_cols=179 Identities=15% Similarity=0.051 Sum_probs=95.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHH
Q 012413 184 DGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIK 263 (464)
Q Consensus 184 ~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~ 263 (464)
.++.++++.||..++..| ....|..+++++++.||..++..|. .+
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~-----------------~~ 101 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP-----------------RE 101 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC-----------------SG
T ss_pred HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC-----------------HH
Confidence 445888999999998743 1233566677777777777775420 13
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHH-----HHhcCc--chHH
Q 012413 264 SLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLY-----KLCSLK--QNKE 336 (464)
Q Consensus 264 ~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~-----nL~~~~--~~~~ 336 (464)
.|..++++++..||..++..| . .+.|..++.+++..||..++..+. .+..++ .-+.
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~ 164 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRK 164 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHHHHH
Confidence 455566666666666666532 1 112333444555555555544110 000000 0000
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
.+...-..+.|..++.+++..|+..++..| ..+.|..++.+++..||..++..++
T Consensus 165 ~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l-----------------~~~~L~~Ll~D~d~~VR~~aa~~l~-------- 219 (244)
T 1lrv_A 165 LVAKRLPEESLGLMTQDPEPEVRRIVASRL-----------------RGDDLLELLHDPDWTVRLAAVEHAS-------- 219 (244)
T ss_dssp HHHHHSCGGGGGGSTTCSSHHHHHHHHHHC-----------------CGGGGGGGGGCSSHHHHHHHHHHSC--------
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHhC-----------------CHHHHHHHHcCCCHHHHHHHHHcCC--------
Confidence 000000112333444555555555554431 3356667777777777777777643
Q ss_pred hHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 012413 417 NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLG 450 (464)
Q Consensus 417 ~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 450 (464)
.+.|..+ ++++..|+..|...|+
T Consensus 220 ----------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 ----------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ----------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred ----------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 3555556 8888999999887664
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0035 Score=69.95 Aligned_cols=221 Identities=13% Similarity=0.097 Sum_probs=155.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCchHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS-DPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~-~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
+.++.++....+....||..|-.++..+...-+.... ..++|.|+..|++. ....+..|+.+|..|+......-.
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 4566667788888889999988888777765433221 35788888888764 688999999999999864322112
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc---
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK--- 332 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~--- 332 (464)
..-...||.+...+.+..++++..|..++..+|..-+|++. ...||.|++.+.+++. .-.++..|+...
T Consensus 171 ~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~ 242 (986)
T 2iw3_A 171 LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE-----VPETVHLLGATTFVA 242 (986)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCS
T ss_pred HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEe
Confidence 22256889999999999999999999999999876555432 2458999999998743 233444444422
Q ss_pred chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC---CHhhHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHH
Q 012413 333 QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG---IAEGREAIVEENGIAALVEAIED-GSVKGKEFAVLTLL 408 (464)
Q Consensus 333 ~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~---~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~ 408 (464)
+--.--. +=.+|.|..-|......++++++.++.|||. ++.-...++ ...+|.|-..... .+|++|+.|..++.
T Consensus 243 ~v~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~ 320 (986)
T 2iw3_A 243 EVTPATL-SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALK 320 (986)
T ss_dssp CCCHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHH
T ss_pred eecchhH-HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHH
Confidence 2111111 1156888888888899999999999999995 333232232 4566666665553 68999999988888
Q ss_pred HHh
Q 012413 409 QLC 411 (464)
Q Consensus 409 ~L~ 411 (464)
.|-
T Consensus 321 ~l~ 323 (986)
T 2iw3_A 321 TLR 323 (986)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00036 Score=78.61 Aligned_cols=254 Identities=11% Similarity=0.116 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc------CCCHHHHHHHHHHHHHhcCCCchHHHHHhc-----C
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK------CSDPWTQEHSVTALLNLSLHENNKTLITNA-----G 260 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~------~~~~~v~~~A~~aL~~La~~~~~~~~i~~~-----g 260 (464)
..|..|..+|..++...+ +.+.. ..++.+.+.+. +.+...++.|+.+++.++..-.....-... .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 467888888888887633 12211 23344444455 566788999999999997531100000000 1
Q ss_pred cHH----HHHHHHccC---CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 261 AIK----SLVYVLKTG---TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 261 ~i~----~Lv~lL~~~---~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
..+ .++..|+++ ++.+|..|+|+|+.++..- ... .-...++.++..|.+++..|+..|+.+|.+++...+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~--~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA--QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 222 234455666 8999999999999998652 111 112347788888888889999999999999987421
Q ss_pred ---------hHHHHHH--cCCHHHHHHhhcCCC---HH--HHHHHHHHHHHHhCC--HhhHHHHHhcCcHHHHHHHHh--
Q 012413 334 ---------NKERAVS--AGAVRPLVGMLAGQG---EG--MAEKAMVVLSLLAGI--AEGREAIVEENGIAALVEAIE-- 393 (464)
Q Consensus 334 ---------~~~~iv~--~g~v~~Lv~lL~~~~---~~--v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~-- 393 (464)
.+..+.. ...++.|+.++.... .. ..+.++.+|..++.. +.....+ ...++.|+..+.
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHH
Confidence 1222221 335566667776541 11 234566666665421 1111111 113344444443
Q ss_pred --c-CCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 394 --D-GSVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 394 --~-~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+ .++..+..+..+|+.++.. .++.... .....++.+..++.....+....+..++..+.+.
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 2 3567777889999988875 3322222 2345678888888776555666666666666544
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0052 Score=58.59 Aligned_cols=184 Identities=13% Similarity=0.072 Sum_probs=124.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCchhH--HHHH-hc-CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc----hH
Q 012413 182 CIDGLQSSSVAIKRSAAAKLRLLAKNRSDNR--VLIG-ES-GAVPALVPLLKCSDPWTQEHSVTALLNLSLHEN----NK 253 (464)
Q Consensus 182 Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r--~~i~-~~-g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~----~~ 253 (464)
+-+.|.+.++..|..|+..|..+....+... .... .. ...+.+-..+.+.+..++..++.+|..++..-. .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 3478899999999999999988765533211 1111 11 345566678889999999999999998875311 11
Q ss_pred H--HHHhcCcHHHHHH-HHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 254 T--LITNAGAIKSLVY-VLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 254 ~--~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
. ...-...+|.|+. .|.+....++..+..++..+......... .++.++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 1 1122446777775 47888899999999988877543221111 24666677788899999999998888754
Q ss_pred C--cc--hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 331 L--KQ--NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 331 ~--~~--~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
. .. +....+. .+++.+..++.+.++.||..|..++..|-.
T Consensus 169 ~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 169 AFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 2 11 1111221 245567788899999999999999988764
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0011 Score=68.59 Aligned_cols=243 Identities=11% Similarity=0.000 Sum_probs=160.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhc--CChHHHHHh--hcC-----C---CHHHHHHHHHHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGES--GAVPALVPL--LKC-----S---DPWTQEHSVTALLN 245 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~--g~i~~Ll~l--L~~-----~---~~~v~~~A~~aL~~ 245 (464)
..+.|+.-|-++.+++|-.|+.+|+.+.+............ ...-.|+.. |.. . -.-||+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 67778888899999999999999999887644221111111 122222222 222 1 14689999999999
Q ss_pred hcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhh-ccCChHHHHHHhhcCChhhHHHHHHH
Q 012413 246 LSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG-ACGAIPPLVSLLIYGSSRGKKDALTT 324 (464)
Q Consensus 246 La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~-~~g~i~~Li~lL~~~~~~v~~~A~~a 324 (464)
+ .+-+.. ..++..|+..+..+.-+++.-++..|..+ ++.+. -.+.++.++..|.+.+.+|+..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 9 753221 34566666666788899999999999998 22222 14557788888899999999999999
Q ss_pred HHHHhcCcchHHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHH
Q 012413 325 LYKLCSLKQNKERAVSAGAVRPLVGMLAGQ--GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEF 402 (464)
Q Consensus 325 L~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 402 (464)
|.-++ .++....+ +..+-..|.+- =.......+..|+.|+..+.. .-.....+|.|-.++.+.-..||..
T Consensus 323 LiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 323 LCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp HTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred hhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHH
Confidence 99988 33332222 23333344322 233356667778877754431 1112368999999999999999999
Q ss_pred HHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 012413 403 AVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLG 450 (464)
Q Consensus 403 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 450 (464)
++.+|..+. ... .+ =-...++|-..+++++..+..+-+
T Consensus 395 VL~TL~tfL--~~~---~L-----RLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLS--EES---ID-----FLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCC--CHH---HH-----HHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hhh---HH-----HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999998887 111 11 023345566678888888877765
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00011 Score=69.43 Aligned_cols=70 Identities=14% Similarity=-0.004 Sum_probs=49.9
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcC
Q 012413 304 PPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEEN 383 (464)
Q Consensus 304 ~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g 383 (464)
+.|..++.+++..||..++..| ..+.|..++.+++..|+..++..+.
T Consensus 173 ~ll~~ll~D~d~~VR~aaa~~l-----------------~~~~L~~Ll~D~d~~VR~~aa~~l~---------------- 219 (244)
T 1lrv_A 173 ESLGLMTQDPEPEVRRIVASRL-----------------RGDDLLELLHDPDWTVRLAAVEHAS---------------- 219 (244)
T ss_dssp GGGGGSTTCSSHHHHHHHHHHC-----------------CGGGGGGGGGCSSHHHHHHHHHHSC----------------
T ss_pred HHHHHHHcCCCHHHHHHHHHhC-----------------CHHHHHHHHcCCCHHHHHHHHHcCC----------------
Confidence 3444566677777777766542 3467888899999999999888753
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHH
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLL 408 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~ 408 (464)
.+.|..+ ++++..|+..|+..|+
T Consensus 220 -~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 -LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 3455555 8889999998887654
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0021 Score=61.42 Aligned_cols=191 Identities=13% Similarity=0.038 Sum_probs=120.6
Q ss_pred HHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCCchHHH
Q 012413 101 LNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTV 179 (464)
Q Consensus 101 ~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~~~v 179 (464)
.||.+-|.+ +++.|..+.+++.++.+......... + ..+.+ ....+.+
T Consensus 12 lpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~--------~-~~~~~----------------------~~~~~~l 60 (278)
T 4ffb_C 12 LPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRD--------D-NIQIY----------------------WRDPTLF 60 (278)
T ss_dssp CCHHHHTTCSSHHHHHHHHHHHHHHHHTC-------------------CCT----------------------TSCTHHH
T ss_pred CCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccch--------h-HHHHH----------------------HHHHHHH
Confidence 456677777 99999999999988743322111000 0 11111 0112333
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCch---hHH--HHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHHhcCCCchH
Q 012413 180 KICIDGLQSSSVAIKRSAAAKLRLLAKNRSD---NRV--LIGESGAVPALVP-LLKCSDPWTQEHSVTALLNLSLHENNK 253 (464)
Q Consensus 180 ~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~---~r~--~i~~~g~i~~Ll~-lL~~~~~~v~~~A~~aL~~La~~~~~~ 253 (464)
-+.+.+.+..++..++.+|..++..-.. .+. ...-...++.|+. +|.+..+.++..|..++..++......
T Consensus 61 ---kk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~ 137 (278)
T 4ffb_C 61 ---AQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI 137 (278)
T ss_dssp ---HHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS
T ss_pred ---HHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH
Confidence 4567889999999999999888754211 111 1112356777775 588889999999999888776432221
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchh---hhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKS---SIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~---~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
.. .++.++..++..++.++..++.+|..+...-..+. ...-...++.+..+|.+.++.||..|..++..+-.
T Consensus 138 ~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 138 TQ-----SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 11 34667778889999999999999988653211100 00001235567788899999999999999998865
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.03 Score=52.35 Aligned_cols=226 Identities=15% Similarity=0.116 Sum_probs=152.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHh-------hcCC-----CHHHHHHHHHHHHH
Q 012413 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE-SGAVPALVPL-------LKCS-----DPWTQEHSVTALLN 245 (464)
Q Consensus 179 v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~-~g~i~~Ll~l-------L~~~-----~~~v~~~A~~aL~~ 245 (464)
+..++.-|..+ +.|+.|+..|..--..-+...-.+-. .|.+..|++= +..+ ...-..+|+..|..
T Consensus 5 i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQc 82 (268)
T 2fv2_A 5 IYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQC 82 (268)
T ss_dssp HHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHH
Confidence 33445445543 34777766554433222333333333 4666666542 2211 12234566777777
Q ss_pred hcCCCchHHHHHhcCcHHHHHHHHccCC-----HHHHHHHHHHHHHhcccc--cchhhhhccCChHHHHHHhhcCChhhH
Q 012413 246 LSLHENNKTLITNAGAIKSLVYVLKTGT-----ETSKQNAACALMSLALIE--ENKSSIGACGAIPPLVSLLIYGSSRGK 318 (464)
Q Consensus 246 La~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~Li~lL~~~~~~v~ 318 (464)
++.|++.|..+.++...-.|...|+..+ +.+|..++++++.|.+.+ +.-..+...+.||..+..++.++.-.+
T Consensus 83 vAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSK 162 (268)
T 2fv2_A 83 VASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSK 162 (268)
T ss_dssp HHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred HHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHH
Confidence 8999999999999988878888887653 689999999999999763 445556678899999999999999999
Q ss_pred HHHHHHHHHHhcCcchHHHH-------HH-cCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh-------c
Q 012413 319 KDALTTLYKLCSLKQNKERA-------VS-AGAVRPLVG-MLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE-------E 382 (464)
Q Consensus 319 ~~A~~aL~nL~~~~~~~~~i-------v~-~g~v~~Lv~-lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~-------~ 382 (464)
.-|..++..+-.++.+...+ .. ..++..++. +...+.+.+.++...+-..|+.++..++.+.. .
T Consensus 163 tvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd 242 (268)
T 2fv2_A 163 TVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKD 242 (268)
T ss_dssp HHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTS
T ss_pred HHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhC
Confidence 99999999988877654333 21 123333333 44677888999999999999999998888875 1
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 012413 383 NGIAALVEAIEDGSVKGKEFAVLTLLQL 410 (464)
Q Consensus 383 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L 410 (464)
|... .++ .+++..+..-...+.|+
T Consensus 243 ~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 243 TTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp STTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred hHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 2222 222 34677777666666655
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.033 Score=62.48 Aligned_cols=247 Identities=14% Similarity=0.054 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHH
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-----SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLV 266 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-----~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv 266 (464)
..|..+..+|..++..-+. .+.. -.++.+-..+.+ .+...++.|+.+|+.++....... ...++.++
T Consensus 436 ~~R~~~~~~l~~~~~~~~~---~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~ 507 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLND---YILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE----KRQIPRLM 507 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTT---HHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH---HHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHH
Confidence 3566777777776654221 1111 122223333333 566789999999999987532111 23445555
Q ss_pred HHH---c--cCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHH
Q 012413 267 YVL---K--TGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVS 340 (464)
Q Consensus 267 ~lL---~--~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~ 340 (464)
.++ . +.++.++..++++|+.++..- ..... -...++.|+..| + +.++..|+.++.+++.. .+..+..
T Consensus 508 ~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p 580 (971)
T 2x1g_F 508 RVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAINLLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKP 580 (971)
T ss_dssp HHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHH
T ss_pred HHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccc
Confidence 443 3 348899999999999987541 11111 123456667677 3 78999999999999962 2222321
Q ss_pred --cCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhCC-H-hhHHHHHhcCcHHHHHH----HHhcC--CHHHHHHHHHHHH
Q 012413 341 --AGAVRPLVGMLAG--QGEGMAEKAMVVLSLLAGI-A-EGREAIVEENGIAALVE----AIEDG--SVKGKEFAVLTLL 408 (464)
Q Consensus 341 --~g~v~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~-~-~~~~~i~~~g~i~~Lv~----lL~~~--~~~v~~~A~~aL~ 408 (464)
.+.+..|..++.. .+...+..++.+++.++.. + +.+..... ..++++++ ++... +++.+.....++.
T Consensus 581 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 659 (971)
T 2x1g_F 581 YADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLN 659 (971)
T ss_dssp HHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 3355666777766 3577888899999988742 1 22222221 23344443 33332 4444555555665
Q ss_pred HHhhc-----CH--Hh------HH--HHHHcCChHHHHHhhhc--CCHHHHHHHHHHHHHhhc
Q 012413 409 QLCAE-----SV--KN------RG--LLVREGGIPPLVALSQT--GSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 409 ~L~~~-----~~--~~------~~--~i~~~g~i~~Lv~lL~s--~~~~v~~~A~~aL~~L~~ 454 (464)
.|+.. .. .. .. .-.....++.+..++.. .++.+.+.+.++++.+..
T Consensus 660 ~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 660 MISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 55431 00 00 00 11124577777777754 367999999999998654
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.022 Score=63.95 Aligned_cols=218 Identities=10% Similarity=0.106 Sum_probs=125.5
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhc-----CChH----HHHHhhcCC---CHHHHHHHHHHHHHhcCCCchHHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGES-----GAVP----ALVPLLKCS---DPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~-----g~i~----~Ll~lL~~~---~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
+.++..|+.|+.+++.++.+........ .. ...+ .++..|.++ ++.+|..|+++|+.++..-. ...
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~-~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~ 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGV-SSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQ 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBC-CCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCc-ccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHH
Confidence 5678899999999999985421110000 00 1222 234445666 89999999999999986421 111
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc---------chhhhhc--cCChHHHHHHhhcCC-----hhhHH
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE---------NKSSIGA--CGAIPPLVSLLIYGS-----SRGKK 319 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~---------~~~~i~~--~g~i~~Li~lL~~~~-----~~v~~ 319 (464)
-...++.++..|.+++..++..|+++|.+++...+ .+..+.. ...++.|+.++.... .....
T Consensus 494 --l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 494 --LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp --HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred --HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 23468888999988899999999999999887421 1232321 234455556666531 11335
Q ss_pred HHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhh----cC-CCHHHHHHHHHHHHHHhCC--HhhHHHHHhcCcHHHHHHH
Q 012413 320 DALTTLYKLCSL-KQNKERAVSAGAVRPLVGML----AG-QGEGMAEKAMVVLSLLAGI--AEGREAIVEENGIAALVEA 391 (464)
Q Consensus 320 ~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL----~~-~~~~v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~l 391 (464)
.+..+|..++.. .+....+.. ..++.|+..+ ++ .++.....++.+|+.++.. ++... -.....++.+...
T Consensus 572 ~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~i 649 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHH
Confidence 666666665441 111111111 1334444444 22 3455666788888888743 32222 2334567777777
Q ss_pred HhcCCHHHHHHHHHHHHHHh
Q 012413 392 IEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 392 L~~~~~~v~~~A~~aL~~L~ 411 (464)
|.....+....+...+..+.
T Consensus 650 L~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHH
T ss_pred HHhhhHhhHHHHHHHHHHHH
Confidence 77654555555555555544
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.044 Score=51.97 Aligned_cols=173 Identities=10% Similarity=0.068 Sum_probs=118.3
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHH----hhcCCCHHHHHHHHHHHHHhcCC---CchHHH
Q 012413 183 IDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVP----LLKCSDPWTQEHSVTALLNLSLH---ENNKTL 255 (464)
Q Consensus 183 v~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~----lL~~~~~~v~~~A~~aL~~La~~---~~~~~~ 255 (464)
...|-+.+...+..|+..|......+++ .+. ..++.++. -+.+.++.+...++.+|..+... .+.+-.
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTSPR---SLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhChH---HHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 4556677888888888888666544332 221 22333333 33467899999999888886421 111100
Q ss_pred HHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 256 ITN-AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 256 i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
-.+ .-.+|.|+.-+.+..+.+|..+-.++..|... .-....++.+++-+.+.+..+|..++..+..+-.....
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 011 22689999999999999999988888777532 11123578888888999999999999999888652211
Q ss_pred HHHHHHcCCH---HHHHHhhcCCCHHHHHHHHHHHHHHh
Q 012413 335 KERAVSAGAV---RPLVGMLAGQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 335 ~~~iv~~g~v---~~Lv~lL~~~~~~v~~~A~~aL~nLa 370 (464)
. ...++ +.+..++.+.+..|+..|+.++..+-
T Consensus 201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1 23478 99999999999999999998887554
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=96.77 E-value=0.13 Score=57.48 Aligned_cols=215 Identities=11% Similarity=0.061 Sum_probs=127.3
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHH---ccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChH
Q 012413 229 KCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVL---KTGTETSKQNAACALMSLALI-EENKSSIGACGAIP 304 (464)
Q Consensus 229 ~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~ 304 (464)
.+.+...++.++++++.++..... .....++.++..+ .++++.++..++++++..+.. ..... . -...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHHHH
Confidence 556788999999999999875221 0123344455444 335788999999999998764 22221 1 246788
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHH--cCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhCC-H-hhHHH
Q 012413 305 PLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVS--AGAVRPLVGMLAG--QGEGMAEKAMVVLSLLAGI-A-EGREA 378 (464)
Q Consensus 305 ~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~--~g~v~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~-~-~~~~~ 378 (464)
.|+..|.+ +.++..|+.+|.+++.. .+..+.. .+.+..|..++.. .+...+..+..+++.++.. + +....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 88888854 88999999999999862 1111211 2244455556654 3567788889999998843 2 33332
Q ss_pred HHhcCcHHHHHHHHh----c-CCHHHHH---HHHHHHHHHhhc-C---H-H--------------h--HHHHHHcCChHH
Q 012413 379 IVEENGIAALVEAIE----D-GSVKGKE---FAVLTLLQLCAE-S---V-K--------------N--RGLLVREGGIPP 429 (464)
Q Consensus 379 i~~~g~i~~Lv~lL~----~-~~~~v~~---~A~~aL~~L~~~-~---~-~--------------~--~~~i~~~g~i~~ 429 (464)
.+ ...++++.+.+. . .+++.+. ....+|+.+... . + . . -..-.....++.
T Consensus 609 ~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (963)
T 2x19_B 609 NL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQL 687 (963)
T ss_dssp HH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHH
Confidence 22 234555554443 2 2454444 344444444432 0 0 0 0 001112334556
Q ss_pred HHHhhhc--CCHHHHHHHHHHHHHhhc
Q 012413 430 LVALSQT--GSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 430 Lv~lL~s--~~~~v~~~A~~aL~~L~~ 454 (464)
+..++.. .++.+.+.++.+++.+..
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 6666543 467899999988888654
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.065 Score=60.04 Aligned_cols=224 Identities=14% Similarity=0.056 Sum_probs=129.0
Q ss_pred hHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhcc---------CchhHHHHHh--cCChHHHHHhhcCC--------
Q 012413 176 QPTVKICIDGLQS-----SSVAIKRSAAAKLRLLAKN---------RSDNRVLIGE--SGAVPALVPLLKCS-------- 231 (464)
Q Consensus 176 ~~~v~~Lv~~L~s-----~~~~vr~~A~~~L~~La~~---------~~~~r~~i~~--~g~i~~Ll~lL~~~-------- 231 (464)
...++.|+..... .++++...++..+..++.. .......+.. ...++.++..+..+
T Consensus 347 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~ 426 (971)
T 2x1g_F 347 HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKW 426 (971)
T ss_dssp HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCS
T ss_pred HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 3455666665533 4677888888877666541 1111111111 13445555544321
Q ss_pred CH-------HHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc-----CCHHHHHHHHHHHHHhcccccchhhhhc
Q 012413 232 DP-------WTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT-----GTETSKQNAACALMSLALIEENKSSIGA 299 (464)
Q Consensus 232 ~~-------~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~aL~~Ls~~~~~~~~i~~ 299 (464)
++ ..|..+..+|..++..-. ..+.. -.++.+-..+.. .+...++.++.++..++..-....
T Consensus 427 d~~e~~~f~~~R~~~~~~l~~~~~~~~--~~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~---- 499 (971)
T 2x1g_F 427 SSDDLECFRCYRQDISDTFMYCYDVLN--DYILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE---- 499 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCT--THHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC---------
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHh--HHHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----
Confidence 11 356677777777765322 11110 012223333333 466788999999999986522111
Q ss_pred cCChHHHHHHh---h--cCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 300 CGAIPPLVSLL---I--YGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 300 ~g~i~~Li~lL---~--~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
...++.++.++ . +.++.++..++++|+.++.. ..+. .... .+++.|+..| + +.++..|+.++.+++.
T Consensus 500 ~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~-~vl~~l~~~l-~--~~v~~~A~~al~~l~~-- 572 (971)
T 2x1g_F 500 KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIP-PAINLLVRGL-N--SSMSAQATLGLKELCR-- 572 (971)
T ss_dssp -CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHH-HHHHHHHHHH-H--SSCHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHH-HHHHHHHHHh-C--hHHHHHHHHHHHHHHH--
Confidence 13345555544 2 34788999999999998863 2222 1121 2566777777 3 6789999999999993
Q ss_pred hhHHHHHh--cCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhhc
Q 012413 374 EGREAIVE--ENGIAALVEAIED--GSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 374 ~~~~~i~~--~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~~ 413 (464)
..+..+.. ...+..|.+++.. -+...+..+..+++.++..
T Consensus 573 ~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 573 DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 23333432 4567777777876 4688999999999999864
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.034 Score=53.91 Aligned_cols=137 Identities=9% Similarity=0.047 Sum_probs=93.6
Q ss_pred ChhhHHHHHHHHHHHhcCcchHHHHHH--cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHH-HhcCcHHHHHH
Q 012413 314 SSRGKKDALTTLYKLCSLKQNKERAVS--AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAI-VEENGIAALVE 390 (464)
Q Consensus 314 ~~~v~~~A~~aL~nL~~~~~~~~~iv~--~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i-~~~g~i~~Lv~ 390 (464)
.+..+.-++++++|+-.++..++.+.. ...++.+...+.+.+..++..++.++.|++........+ ....++..+..
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~ 240 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIST 240 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 456788999999999999988887765 235555666666678899999999999998421100000 01113444455
Q ss_pred HHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHH
Q 012413 391 AIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLG 450 (464)
Q Consensus 391 lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~ 450 (464)
++. ..+.+....++.+|++|...+.+.+......|+...+-++... ..+.|.+.|...|.
T Consensus 241 il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 241 ILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN 302 (304)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred HHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 554 3688999999999999998776656555556666666666655 35688887776654
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.052 Score=52.81 Aligned_cols=196 Identities=13% Similarity=0.061 Sum_probs=149.8
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhH----HHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNR----VLIGE-SGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE 250 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r----~~i~~-~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~ 250 (464)
.+++..|+..|..-+.+.|+.+..+..++.......+ ..+.. ...+..|+.-. +++++-..+...|....+++
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHhH
Confidence 3678888999999999999999999988887654332 12221 12222233322 46677778888888889998
Q ss_pred chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhc-ccccchhhhhcc---CChHHHHHHhhcCChhhHHHHHHHHH
Q 012413 251 NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLA-LIEENKSSIGAC---GAIPPLVSLLIYGSSRGKKDALTTLY 326 (464)
Q Consensus 251 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls-~~~~~~~~i~~~---g~i~~Li~lL~~~~~~v~~~A~~aL~ 326 (464)
.....+...+.+-.+.+..+.++-++..-|..++..|- .|.......... ..+...-.||.+++--++++++..|+
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 88888888888889999999999999999999998753 343333333322 34667778999999999999999999
Q ss_pred HHhcCcchHHHHHH----cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 327 KLCSLKQNKERAVS----AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 327 nL~~~~~~~~~iv~----~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
.|-.++.|...+.. ..-+..++.+|++....++.+|..+..-...+|
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 99999888777653 446788999999999999999999999887654
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.042 Score=51.33 Aligned_cols=146 Identities=18% Similarity=0.134 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCC-----CHHHHHHHHHHHHHhcCC--CchHHHHHhcCcHHHHH
Q 012413 194 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS-----DPWTQEHSVTALLNLSLH--ENNKTLITNAGAIKSLV 266 (464)
Q Consensus 194 r~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~-----~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv 266 (464)
..+|+..|..+|.| ++.|..+.++...-.|...|... ...+|..++.+++.|.+. ++....+.+.+.||..+
T Consensus 73 VcnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 73 VCNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 35677777888887 88889999988877788887653 357899999999999984 35556677899999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcccccchhhhhc-c-------CChHHHHH-HhhcCChhhHHHHHHHHHHHhcCcchHHH
Q 012413 267 YVLKTGTETSKQNAACALMSLALIEENKSSIGA-C-------GAIPPLVS-LLIYGSSRGKKDALTTLYKLCSLKQNKER 337 (464)
Q Consensus 267 ~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~-------g~i~~Li~-lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 337 (464)
+.+..+++-.|..|...+..+-.++.+-..+.. . ..+..++. +..++++.+.+...++-..|+.++..++.
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~a 231 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREA 231 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999998777655443332 1 12333333 33457889999999999999999988877
Q ss_pred HHH
Q 012413 338 AVS 340 (464)
Q Consensus 338 iv~ 340 (464)
+..
T Consensus 232 L~~ 234 (268)
T 2fv2_A 232 LRQ 234 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=96.25 E-value=0.11 Score=58.05 Aligned_cols=172 Identities=12% Similarity=0.083 Sum_probs=107.0
Q ss_pred ccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHh---hcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHH
Q 012413 270 KTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL---IYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVR 345 (464)
Q Consensus 270 ~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL---~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~ 345 (464)
...+...++.++++++.++..-... ....++.++..+ .++++.++..++++++.++.. ..+. .+. ...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHH
Confidence 4567788999999999998762110 122345555554 235788999999999998873 2222 233 35889
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh--cCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcC-HHhHHH
Q 012413 346 PLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE--ENGIAALVEAIED--GSVKGKEFAVLTLLQLCAES-VKNRGL 420 (464)
Q Consensus 346 ~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~~~-~~~~~~ 420 (464)
.|+..|.+ +.++..|+.+|.+++.. .+..+.. ...+..|..++.. -+...+..+..+++.++... +.....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99998865 78999999999999941 2222221 2345556666664 36788999999999988643 233333
Q ss_pred HHHcCChHHHHHhhh----cC-CHHHHHHHHHHHHHh
Q 012413 421 LVREGGIPPLVALSQ----TG-SVRAKHKAETLLGYL 452 (464)
Q Consensus 421 i~~~g~i~~Lv~lL~----s~-~~~v~~~A~~aL~~L 452 (464)
.. ...++++...+. .. +++.+.....++..|
T Consensus 609 ~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 609 NL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 22 234555555443 22 555555444444333
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0085 Score=62.03 Aligned_cols=186 Identities=16% Similarity=0.098 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT 271 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~ 271 (464)
.||+.|+++|+.+ .+-+.- ..++..|+..+..+..+++..++..|..+ . +.... -.+.++.++..|++
T Consensus 243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~--DLL~~--Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K--EFVED--KDGLCRKLVSLLSS 310 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G--GGCCC--HHHHHHHHHHHTTC
T ss_pred ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H--HHHHH--HHHHHHHHHhhcCC
Confidence 5899999999999 664432 34555555556778899999999999998 1 11100 24578889999999
Q ss_pred CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC--ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHH
Q 012413 272 GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG--SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVG 349 (464)
Q Consensus 272 ~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~ 349 (464)
.+.+|+..|+.+|.-++ .++.... .+..+.++|.+- -..........|+.|+..+... -.....+|.|.-
T Consensus 311 ~DDDVRAVAAetLiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~P 382 (800)
T 3oc3_A 311 PDEDIKLLSAELLCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIFP 382 (800)
T ss_dssp SSHHHHHHHHHHHTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTGG
T ss_pred cccHHHHHHHHHhhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHHh
Confidence 99999999999999987 2221111 234444555543 2334556677788887755321 112368899999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHH-HHHHhcCCHHHHHHHHHHH
Q 012413 350 MLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAAL-VEAIEDGSVKGKEFAVLTL 407 (464)
Q Consensus 350 lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L-v~lL~~~~~~v~~~A~~aL 407 (464)
++.+.-+.||..++.+|..+.. ...+..+ .++|-+.+++++..+..+-
T Consensus 383 FLRHtITSVR~AVL~TL~tfL~----------~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 383 CFTSPVPEVRTSILNMVKNLSE----------ESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGTCSSHHHHHHHHHHTTTCCC----------HHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 9999999999999999987771 1122222 2334467777777666655
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.33 Score=47.25 Aligned_cols=241 Identities=13% Similarity=0.058 Sum_probs=166.9
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-chH----HHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 012413 213 VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNK----TLITNAGAIKSLVYVLKT-GTETSKQNAACALMS 286 (464)
Q Consensus 213 ~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-~~~----~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~ 286 (464)
+.+...+.+..|+..|..=+.+.|..++.+..++.... +.+ ..+.. --..|..++.. +++++-..+-..|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 44556799999999999999999999999999997753 322 22332 22223333322 355666677777777
Q ss_pred hcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHc---CCHHHHHHhhcCCCHHHHHHH
Q 012413 287 LALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSA---GAVRPLVGMLAGQGEGMAEKA 362 (464)
Q Consensus 287 Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~---g~v~~Lv~lL~~~~~~v~~~A 362 (464)
...++.....+...+.+-.+.+.+..++=++...|..++..|-. |+.....++.. ..+...-.+|.+++--.+..+
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 77888777777787788889999998898999999999988755 66655565542 245667788888888889999
Q ss_pred HHHHHHHhCCHhhHHHHHh----cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc---CHHhHHHHHHc--CChHHHHHh
Q 012413 363 MVVLSLLAGIAEGREAIVE----ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE---SVKNRGLLVRE--GGIPPLVAL 433 (464)
Q Consensus 363 ~~aL~nLa~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~---~~~~~~~i~~~--g~i~~Lv~l 433 (464)
+..|+.|-....+...+.. ..-+..++.+|++.+..+|-.|-.+.--..+. ++.-...+... ..+..|-++
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f 309 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF 309 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 9999999976666555443 45799999999999999999999998887765 33334444442 334444444
Q ss_pred hhcC--CHHHHHHHHHHHHHhhcC
Q 012413 434 SQTG--SVRAKHKAETLLGYLREP 455 (464)
Q Consensus 434 L~s~--~~~v~~~A~~aL~~L~~~ 455 (464)
..+. ++.-...=.-.++.|.+-
T Consensus 310 ~~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 310 QNDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp TTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred CCCCcchhhHHHHHHHHHHHHHhC
Confidence 4333 333333333444544443
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.18 Score=51.30 Aligned_cols=128 Identities=20% Similarity=0.192 Sum_probs=97.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCc
Q 012413 182 CIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGA 261 (464)
Q Consensus 182 Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~ 261 (464)
++.. ..+++..++-|++.+....++-|.+.. .++..++.+.++++..||..|...|-.+|++ +.... .
T Consensus 34 Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----i 101 (507)
T 3u0r_A 34 ILDG-VKGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----V 101 (507)
T ss_dssp HHHG-GGSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----H
T ss_pred HHHh-cCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----H
Confidence 3443 345789999999999999998787765 4788899999999999999999999999988 55444 4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHH
Q 012413 262 IKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKL 328 (464)
Q Consensus 262 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL 328 (464)
+..|+++|+.+++.-....-.+|..|-..+ ..+.+..|..-+..++..+|..++..|..=
T Consensus 102 aDvL~QlLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 102 ADILTQLLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 567999999998876666666666653211 134566677666677888888888877543
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.059 Score=51.08 Aligned_cols=178 Identities=11% Similarity=0.031 Sum_probs=120.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHH----HccCCHHHHHHHHHHHHHhccc---ccc
Q 012413 221 VPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYV----LKTGTETSKQNAACALMSLALI---EEN 293 (464)
Q Consensus 221 i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~l----L~~~~~~v~~~a~~aL~~Ls~~---~~~ 293 (464)
=+.+...|.+.+..-+..|+..|...... +...+.. .+..+++. +.+.+..+...++.+|..+... .+.
T Consensus 48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 48 KVSLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp CHHHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456666677777788888887775431 1111111 23333443 3377888888888888876432 111
Q ss_pred hhhhhc-cCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 294 KSSIGA-CGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 294 ~~~i~~-~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
+-.-.+ .-.+|.|++-+.+....+|..+-.++..++. .+. ...++.++.-+++.+..++..++..+..+-.
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 111111 2357999999999999999999888877765 222 2256778888899999999999999988863
Q ss_pred CHhhHHHHHhcCcH---HHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 372 IAEGREAIVEENGI---AALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 372 ~~~~~~~i~~~g~i---~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
..... ...++ +.+..++.+.+..||..|..++..+..+
T Consensus 197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 21111 24578 9999999999999999999999877653
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.14 Score=47.30 Aligned_cols=144 Identities=15% Similarity=0.017 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHHhcC--CCchH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVP-LLKCSDPWTQEHSVTALLNLSL--HENNK 253 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~-lL~~~~~~v~~~A~~aL~~La~--~~~~~ 253 (464)
..++....+.+++...||..|+..|+.+ .. ....++.+.. +-.++.-.|++.++.++..++. +++
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~---------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK---------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT---------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-cC---------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3333334455677789999999988766 21 1235566666 5556888999999999998874 333
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-Cc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LK 332 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~ 332 (464)
..++.+...+++++..+|..|...+.--+..+..+ .-..-.+|.|-.+..+++..|++...+.|..+++ +|
T Consensus 139 ------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 ------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 26788899999999999999988875422221100 0001135555566677788999999999999999 55
Q ss_pred chHHHHHH
Q 012413 333 QNKERAVS 340 (464)
Q Consensus 333 ~~~~~iv~ 340 (464)
+-...+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=95.27 E-value=1.1 Score=50.39 Aligned_cols=247 Identities=13% Similarity=0.031 Sum_probs=146.5
Q ss_pred CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCC---CHHHHHHHHHHHHHhcC--CCc----hHHHHHhc
Q 012413 189 SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS---DPWTQEHSVTALLNLSL--HEN----NKTLITNA 259 (464)
Q Consensus 189 ~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~---~~~v~~~A~~aL~~La~--~~~----~~~~i~~~ 259 (464)
.++..|..|-..|..+-+. .+++.....+|.+. ++.+|..|+.+|.+... +++ .+..+. .
T Consensus 20 sd~~~r~~A~~~L~~~q~s----------p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr-~ 88 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSS----------STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR-D 88 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHS----------TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHHHHcC----------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH-H
Confidence 4789999999999666543 35666777778663 78999999999988765 233 332222 2
Q ss_pred CcHHHHHHHH-ccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCCh-hhHHHHHHHHHHHhcC------
Q 012413 260 GAIKSLVYVL-KTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSS-RGKKDALTTLYKLCSL------ 331 (464)
Q Consensus 260 g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~-~v~~~A~~aL~nL~~~------ 331 (464)
..+..+...- ..+...++...+.+|..+....-. -...+.++.|+.++..++. ......+++|..|...
T Consensus 89 ~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 89 SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 2333333310 023567899999999998765210 1346678889999887554 3445556666633321
Q ss_pred ---cc--h-----HHHHHHcC---CHHHHHHhhc----CCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc
Q 012413 332 ---KQ--N-----KERAVSAG---AVRPLVGMLA----GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED 394 (464)
Q Consensus 332 ---~~--~-----~~~iv~~g---~v~~Lv~lL~----~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~ 394 (464)
++ . ++.+.+.. +++....+|. ..++.++..++.+|......-. ...+.+.+.++.+..++.+
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~ 244 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQI 244 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTS
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCC
Confidence 00 1 22232210 1333444443 3567788888888888775322 3455667788888888865
Q ss_pred CCHHHHHHHHHHHHHHhhcC--HHhHHHHHHcCChHHHHHhhh--cCCHHHHHHHHHHHHHh
Q 012413 395 GSVKGKEFAVLTLLQLCAES--VKNRGLLVREGGIPPLVALSQ--TGSVRAKHKAETLLGYL 452 (464)
Q Consensus 395 ~~~~v~~~A~~aL~~L~~~~--~~~~~~i~~~g~i~~Lv~lL~--s~~~~v~~~A~~aL~~L 452 (464)
+.++..|+.||..+.... +..+..+++.=.+...+..+. .++.+..++-++.+..+
T Consensus 245 --~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ 304 (980)
T 3ibv_A 245 --EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQ 304 (980)
T ss_dssp --HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 899999999999998763 344443333211122222222 35666665555555433
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=95.20 E-value=0.35 Score=54.76 Aligned_cols=231 Identities=10% Similarity=-0.003 Sum_probs=124.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc---CchhHHHHHh--cCChHHHHHhhcCC-------------------C
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKN---RSDNRVLIGE--SGAVPALVPLLKCS-------------------D 232 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~---~~~~r~~i~~--~g~i~~Ll~lL~~~-------------------~ 232 (464)
..++.++.....++.++...++.....++.+ .+..+..+.. ...++.++..+..+ +
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d 423 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence 3566666666777888888888887777652 0111111110 12344444443221 1
Q ss_pred H---HHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHc--cCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHH
Q 012413 233 P---WTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLK--TGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPL 306 (464)
Q Consensus 233 ~---~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~L 306 (464)
. ..+..+..+|..++..... .+. .-..+.|-..+. ..+...+..++++++.++..- +....-.-...++.|
T Consensus 424 ~d~~~~~~~~~~~L~~l~~~~~~--~~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l 500 (1049)
T 3m1i_C 424 SDTIQLYKSEREVLVYLTHLNVI--DTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDL 500 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHH--HHH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHH--HHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHH
Confidence 1 2344566666666521110 000 001233333443 256788999999999997541 110100011123333
Q ss_pred HHHhhc-----CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHH-
Q 012413 307 VSLLIY-----GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIV- 380 (464)
Q Consensus 307 i~lL~~-----~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~- 380 (464)
+.+... +.+.++..++++++..+..-.....+.. .+++.++..|.+.++.++..|+.++.+++.. .+..+.
T Consensus 501 ~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~--~~~~l~~ 577 (1049)
T 3m1i_C 501 LDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVILKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVI 577 (1049)
T ss_dssp HHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH--HTHHHHS
T ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--HHHHhhc
Confidence 333221 2333444688888877653111122222 2677888888888899999999999999963 223333
Q ss_pred ---------hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 381 ---------EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 381 ---------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
-...+..+..++..-+.+-......+++.+...
T Consensus 578 ~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 578 QQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp CCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 122344445555555565667777787777654
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.4 Score=46.31 Aligned_cols=116 Identities=12% Similarity=0.116 Sum_probs=77.1
Q ss_pred HHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHh--cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhcc
Q 012413 225 VPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITN--AGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGAC 300 (464)
Q Consensus 225 l~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~ 300 (464)
+..+.. ..+..+..++++++|+-.++..++.+.. ...++.+...+.+.+..++..++..+.|++... ..+..=...
T Consensus 153 ~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~ 232 (304)
T 3ebb_A 153 INLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKA 232 (304)
T ss_dssp HHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHH
Confidence 344433 4577799999999999999888887765 234555555656678999999999999998642 111100001
Q ss_pred CChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHH
Q 012413 301 GAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKERAVS 340 (464)
Q Consensus 301 g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~iv~ 340 (464)
..+..+.+++.. .+.+....++-+|++|...+.....+.+
T Consensus 233 ~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak 273 (304)
T 3ebb_A 233 QCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAK 273 (304)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence 123344444543 4888999999999999986554444444
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=94.78 E-value=0.18 Score=56.97 Aligned_cols=139 Identities=8% Similarity=-0.076 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcH
Q 012413 189 SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-----SDPWTQEHSVTALLNLSLH-ENNKTLITNAGAI 262 (464)
Q Consensus 189 ~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-----~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i 262 (464)
.++..++.++++++.++..-......-.=..+++.|+.++++ +.+.++..++++|+..+.- ..... + =...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~-L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-F-LRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-H-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-H-HHHHH
Confidence 689999999999999997744322211123577888888864 3345667888999887641 00111 1 12245
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc------cCChHHHHHHhh----cCChhhHHHHHHHHHHHhcC
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA------CGAIPPLVSLLI----YGSSRGKKDALTTLYKLCSL 331 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~------~g~i~~Li~lL~----~~~~~v~~~A~~aL~nL~~~ 331 (464)
..|+..+.++++.++..||+++.+|+.. .+..+.. ...++.++..+. .-+..-+..+..+++.+...
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 5566667777899999999999999864 2222321 113455544333 34666777888889888874
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=94.71 E-value=1.1 Score=50.64 Aligned_cols=204 Identities=12% Similarity=0.084 Sum_probs=127.5
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHHHhcC-
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC----SDPWTQEHSVTALLNLSL- 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~----~~~~v~~~A~~aL~~La~- 248 (464)
+..+.+..+.+++.+......+ |+.+|......... ....+..+..++++ .++.++..|..+++.|..
T Consensus 353 GT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~P------t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k 425 (1056)
T 1lsh_A 353 ATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQA------TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFR 425 (1056)
T ss_dssp CSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCC------CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCC------CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHH
Confidence 4467777777777765433322 44444332221111 22345566677765 567888888888888853
Q ss_pred ---CCchHHHHHhcCcHHHH----HHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-----C--C
Q 012413 249 ---HENNKTLITNAGAIKSL----VYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-----G--S 314 (464)
Q Consensus 249 ---~~~~~~~i~~~g~i~~L----v~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-----~--~ 314 (464)
+... +....++.+ .+.+...+.+-+..++.+|+|+.. ...++.|..++.. . .
T Consensus 426 ~c~~~~~----c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l~~~l~~~~~~~~~~~ 491 (1056)
T 1lsh_A 426 YCANTVS----CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYS 491 (1056)
T ss_dssp HHTTCSS----CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSC
T ss_pred HhccCCC----CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHHHHhhcCccccccccc
Confidence 1111 111234444 445566788889999999999832 3457777777742 1 3
Q ss_pred hhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhh--cCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHH
Q 012413 315 SRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGML--AGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAI 392 (464)
Q Consensus 315 ~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL--~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL 392 (464)
..++..|+++|..++...... +-+.|..+. ...+.++|..|+.+|-.-.-. ...+..+...+
T Consensus 492 ~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~---------~~~l~~ia~~l 555 (1056)
T 1lsh_A 492 TRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIRSCIVFFESKPS---------VALVSMVAVRL 555 (1056)
T ss_dssp HHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC---------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC---------HHHHHHHHHHH
Confidence 457888999999987632211 335677777 455688888888777533211 23566777777
Q ss_pred hc-CCHHHHHHHHHHHHHHhhcC
Q 012413 393 ED-GSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 393 ~~-~~~~v~~~A~~aL~~L~~~~ 414 (464)
.. .+.+|.......|.+|+...
T Consensus 556 ~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 556 RREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTCC
T ss_pred hhCchHHHHHHHHHHHHHHHhcC
Confidence 74 68899998888888888653
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.7 Score=42.70 Aligned_cols=142 Identities=11% Similarity=-0.020 Sum_probs=99.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHH-HHccCCHHHHHHHHHHHHHhcc--cccchhhh
Q 012413 221 VPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVY-VLKTGTETSKQNAACALMSLAL--IEENKSSI 297 (464)
Q Consensus 221 i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~i 297 (464)
++....+.+++..++|..|+.+|+.+ . + ....++.+.. +-.+++-.|++.++.++..++. +++
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~-~-------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S-K-------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-T-T-------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-c-C-------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-----
Confidence 34455666778789999999999887 2 1 1225566665 5556788999999999999864 222
Q ss_pred hccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhH
Q 012413 298 GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGR 376 (464)
Q Consensus 298 ~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~ 376 (464)
..++.+...+.+++..+|+.|...+.--+..+..+ .--.-+++.|-.+..++...|+...+++|..++. +|+-.
T Consensus 139 ---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 139 ---KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp ---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 25788999999999999999998875423221110 0011256777777788889999999999999994 56554
Q ss_pred HHHHh
Q 012413 377 EAIVE 381 (464)
Q Consensus 377 ~~i~~ 381 (464)
..+++
T Consensus 214 ~~~~~ 218 (240)
T 3l9t_A 214 KIELK 218 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=94.51 E-value=1.3 Score=45.23 Aligned_cols=122 Identities=16% Similarity=0.105 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHH
Q 012413 231 SDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSL 309 (464)
Q Consensus 231 ~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~l 309 (464)
.++..++-|+..+...-++ |+.... ++..++.++.+++..+|.+|...|..+|.+ +....+ ...|++|
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~Ql 108 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILTQL 108 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHHH
Confidence 4688888899988888775 665443 788899999999999999999999999988 554444 6788999
Q ss_pred hhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 012413 310 LIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 310 L~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa 370 (464)
|..+++.-...+-.+|..|...+. .+.+..|...+...++.+++.++..|..=.
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 999888777777777777655221 235555555555567888888887775433
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.68 Score=42.76 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHHhcccccchhhhhc-cCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc--h-HHHHH---------
Q 012413 273 TETSKQNAACALMSLALIEENKSSIGA-CGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ--N-KERAV--------- 339 (464)
Q Consensus 273 ~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~--~-~~~iv--------- 339 (464)
+...+..++.+|..+.....+...+.. .+++..|+..|.++++.++..++..|..+|..++ + ...+.
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~ 146 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 146 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence 456778889999998877666555554 6789999999998999999999999999998553 5 54443
Q ss_pred -HcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhCCH---hh----HHHHHhcCcHHHHHHHHh-cCCHHHHH
Q 012413 340 -SAGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAGIA---EG----REAIVEENGIAALVEAIE-DGSVKGKE 401 (464)
Q Consensus 340 -~~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~---~~----~~~i~~~g~i~~Lv~lL~-~~~~~v~~ 401 (464)
+..-+..++..++. ...+.+..++..+-.|...+ +. |..+...| +..+++-++ ..++.+..
T Consensus 147 ~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDMKV 217 (233)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-HHHHHHHHHHCCCHHHHH
T ss_pred CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCCHHHHH
Confidence 23356778888864 33455555555555555433 22 44444555 444455555 35555443
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=93.82 E-value=1.6 Score=49.45 Aligned_cols=167 Identities=13% Similarity=0.065 Sum_probs=97.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc----CCHHHHHHHHHHHHHhcccccchh
Q 012413 220 AVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT----GTETSKQNAACALMSLALIEENKS 295 (464)
Q Consensus 220 ~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~a~~aL~~Ls~~~~~~~ 295 (464)
++..+.+++.+.+....+ |+.+|..+...... ....+..+..++++ .++.++..+..+++.|....-...
T Consensus 357 a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~P-----t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~ 430 (1056)
T 1lsh_A 357 ALLFLKRTLASEQLTSAE-ATQIVASTLSNQQA-----TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT 430 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCC-----CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCC-----CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC
Confidence 355566666665433322 44444332221111 11245666677765 467788888888888764310000
Q ss_pred hhhccCChHHHHHHh----hcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcC-------CCHHHHHHHHH
Q 012413 296 SIGACGAIPPLVSLL----IYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAG-------QGEGMAEKAMV 364 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL----~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-------~~~~v~~~A~~ 364 (464)
.......++.+.+.| ...+..-+..++.+|+|+... ..++.|..++.. ....++..|++
T Consensus 431 ~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ 500 (1056)
T 1lsh_A 431 VSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIM 500 (1056)
T ss_dssp SSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHH
Confidence 011223355555554 456777788899999998642 256677777642 23467889999
Q ss_pred HHHHHhCCHhhHHHHHhcCcHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 012413 365 VLSLLAGIAEGREAIVEENGIAALVEAIE--DGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 365 aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~~ 409 (464)
+|..++.... ..+-+.|+++.. ..+.++|..|...|..
T Consensus 501 ALr~~~~~~p-------~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 501 ALRNIAKRDP-------RKVQEIVLPIFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp TTTTGGGTCH-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhhhch-------HHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999984311 123445667774 4678888888888754
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=93.80 E-value=2.9 Score=41.61 Aligned_cols=144 Identities=18% Similarity=0.199 Sum_probs=99.1
Q ss_pred HHHHhcCChHHHHHhhc-----------CCCHHHHHHHHHHHHHhcCCCchHHHHHh-cCcHHHHHHHHccCCHHHHHHH
Q 012413 213 VLIGESGAVPALVPLLK-----------CSDPWTQEHSVTALLNLSLHENNKTLITN-AGAIKSLVYVLKTGTETSKQNA 280 (464)
Q Consensus 213 ~~i~~~g~i~~Ll~lL~-----------~~~~~v~~~A~~aL~~La~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a 280 (464)
+.+. .+|+..|+..|. ..+...+..++.+|..+..+..+...+.. ..++..|+..|.+..+.++..+
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a 182 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 182 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence 4444 567888888774 23457888999999999888766666665 7789999999999999999999
Q ss_pred HHHHHHhccccc--c-hhhh----------hccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcch-------HHHHH
Q 012413 281 ACALMSLALIEE--N-KSSI----------GACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQN-------KERAV 339 (464)
Q Consensus 281 ~~aL~~Ls~~~~--~-~~~i----------~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~-------~~~iv 339 (464)
+..|..+|..++ + ...+ .+..-+..++..|.+ .+.+.+.+++..+-.+...++. +..+.
T Consensus 183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~ 262 (383)
T 3eg5_B 183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM 262 (383)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999998887643 2 2222 334568889999987 4667777777777666665432 23344
Q ss_pred HcCCHHHHHHhhcCC-CHHH
Q 012413 340 SAGAVRPLVGMLAGQ-GEGM 358 (464)
Q Consensus 340 ~~g~v~~Lv~lL~~~-~~~v 358 (464)
..|..+.+-. |+.. ++++
T Consensus 263 ~~Gl~~il~~-lr~~~~~~L 281 (383)
T 3eg5_B 263 RLGLHQVLQE-LREIENEDM 281 (383)
T ss_dssp HTTHHHHHHH-HTTSCCHHH
T ss_pred HCChHHHHHH-HhcCCChhH
Confidence 5655555544 5543 4433
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.58 E-value=3.8 Score=37.62 Aligned_cols=142 Identities=17% Similarity=0.181 Sum_probs=94.9
Q ss_pred hcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCCCchHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHH
Q 012413 217 ESGAVPALVPLLKC-----------SDPWTQEHSVTALLNLSLHENNKTLITN-AGAIKSLVYVLKTGTETSKQNAACAL 284 (464)
Q Consensus 217 ~~g~i~~Ll~lL~~-----------~~~~v~~~A~~aL~~La~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL 284 (464)
..+|+..|+..|.. .+.+.+..++.+|..+..+..+...+.. .+++..|+..|.+++..++..++..|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 35677777776643 1457788999999999888776666665 77899999999999999999999999
Q ss_pred HHhccccc--c-hhhh----------hccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcch-------HHHHHHcCC
Q 012413 285 MSLALIEE--N-KSSI----------GACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQN-------KERAVSAGA 343 (464)
Q Consensus 285 ~~Ls~~~~--~-~~~i----------~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~-------~~~iv~~g~ 343 (464)
..+|..++ + ...+ .+..-+..+++.+.+ .+.+.+..++..+-.+...++. +..+...|.
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 200 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 200 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 88887643 4 3333 233467788888875 3556666666666666665432 233445555
Q ss_pred HHHHHHhhcCCCHHH
Q 012413 344 VRPLVGMLAGQGEGM 358 (464)
Q Consensus 344 v~~Lv~lL~~~~~~v 358 (464)
.+.+-.+=...++++
T Consensus 201 ~~il~~l~~~~~~~L 215 (233)
T 2f31_A 201 HQVLQELREIENEDM 215 (233)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhccCCHHH
Confidence 444443333344443
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=93.48 E-value=1.2 Score=50.44 Aligned_cols=221 Identities=12% Similarity=0.069 Sum_probs=136.4
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcCC-----
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSLH----- 249 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~~----- 249 (464)
...+..++..+.+++...|..|-..|..+-+. .+++..+..+|. +.++.+|..|+..|.+....
T Consensus 15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~----------p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l 84 (1049)
T 3m1i_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQDN----------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLL 84 (1049)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS----------TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC----------chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccC
Confidence 34555556666677778898898888766443 255666666664 46889999999999997642
Q ss_pred -CchHHHHHhcCcHHHHHHHHccC-----CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHH
Q 012413 250 -ENNKTLITNAGAIKSLVYVLKTG-----TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALT 323 (464)
Q Consensus 250 -~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~ 323 (464)
++.+..+. ...+..+...-..+ +..++...+.++..++..+-- -...+.++.|++++. .+...+..++.
T Consensus 85 ~~~~~~~ir-~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p---~~Wp~ll~~L~~~~~-~~~~~~~~~l~ 159 (1049)
T 3m1i_C 85 PNDHRIGIR-NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP---QNWPEFIPELIGSSS-SSVNVCENNMI 159 (1049)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHT-TCHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHHc-cChHHHHHHHH
Confidence 23333322 22333333322111 367888999999998765211 024567889999886 55556777788
Q ss_pred HHHHHhcC-c----c----hH-----HHHHH--cCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHH
Q 012413 324 TLYKLCSL-K----Q----NK-----ERAVS--AGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAGIAEGREAIVEENGIA 386 (464)
Q Consensus 324 aL~nL~~~-~----~----~~-----~~iv~--~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~ 386 (464)
+|..|+.. . + .+ ..+.+ ...++.+..++.. .+..++..++.++......-. ...+.+...++
T Consensus 160 ~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~-~~~~~~~~ll~ 238 (1049)
T 3m1i_C 160 VLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP-YRYIYETNILE 238 (1049)
T ss_dssp HHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHH
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC-HHHHhhhhHHH
Confidence 88777641 1 0 11 22222 1123334444543 346788889999987764322 12245566677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 387 ALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 387 ~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
.+.+.+. .++.++..|+.+|..+...
T Consensus 239 ~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 239 LLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 6663332 2788899999999988865
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=93.40 E-value=1.7 Score=48.80 Aligned_cols=264 Identities=9% Similarity=-0.018 Sum_probs=135.6
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC---chHHHHHhcCcHH
Q 012413 187 QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE---NNKTLITNAGAIK 263 (464)
Q Consensus 187 ~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~---~~~~~i~~~g~i~ 263 (464)
.+.++.++..++.+|.....--+ -..+.+.+.++.+..+|.+ ++++..|+.+|..+.... +.+..+...=.+.
T Consensus 203 ~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~ 278 (980)
T 3ibv_A 203 NAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 278 (980)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHH
Confidence 34788899999999987765322 2456667888888888865 899999999999987632 3333333221112
Q ss_pred HHHHHHc--cCCHHHHHHHHHHHHHhccc-------c-----cchhhhhc--cCChHHHHHHhhcCChhhHHHHHHHHHH
Q 012413 264 SLVYVLK--TGTETSKQNAACALMSLALI-------E-----ENKSSIGA--CGAIPPLVSLLIYGSSRGKKDALTTLYK 327 (464)
Q Consensus 264 ~Lv~lL~--~~~~~v~~~a~~aL~~Ls~~-------~-----~~~~~i~~--~g~i~~Li~lL~~~~~~v~~~A~~aL~n 327 (464)
..+..+. .+|.+..+..+..+..++.. + +.+..... .+.++.++.++.+++.++-..++..+..
T Consensus 279 ~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~ 358 (980)
T 3ibv_A 279 LFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSD 358 (980)
T ss_dssp HHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 2222222 45666655444444333211 1 00111111 3578888888888887877776666655
Q ss_pred HhcCcc-------hHHHHHH--cCCHHHHHHhhcCCC------------H----HHHHHHHHHHHHHh-CCHhhHHHHHh
Q 012413 328 LCSLKQ-------NKERAVS--AGAVRPLVGMLAGQG------------E----GMAEKAMVVLSLLA-GIAEGREAIVE 381 (464)
Q Consensus 328 L~~~~~-------~~~~iv~--~g~v~~Lv~lL~~~~------------~----~v~~~A~~aL~nLa-~~~~~~~~i~~ 381 (464)
+..... ....+.. ...++.++.-+.-+. . +.|......+..++ -.++..-...-
T Consensus 359 ~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~ 438 (980)
T 3ibv_A 359 LLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438 (980)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 543210 1111111 113444444443211 0 12333332222222 11211111000
Q ss_pred cCcHHHHHHHHh---cCCHHHHHHHHHHHHHHhhcCHHhHHHH-HHcC----ChHHHHHhhh-----cCCHHHHHHHHHH
Q 012413 382 ENGIAALVEAIE---DGSVKGKEFAVLTLLQLCAESVKNRGLL-VREG----GIPPLVALSQ-----TGSVRAKHKAETL 448 (464)
Q Consensus 382 ~g~i~~Lv~lL~---~~~~~v~~~A~~aL~~L~~~~~~~~~~i-~~~g----~i~~Lv~lL~-----s~~~~v~~~A~~a 448 (464)
.-..+.+-+.+. +.+-...+.|+.+|+.++..-......+ -+.. .++.|..++. .+++.|+..+.++
T Consensus 439 ~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~ 518 (980)
T 3ibv_A 439 SAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEI 518 (980)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 011111222221 2346678899999999886432111000 0011 3345555555 5789999999999
Q ss_pred HHHhhc
Q 012413 449 LGYLRE 454 (464)
Q Consensus 449 L~~L~~ 454 (464)
++..++
T Consensus 519 l~rys~ 524 (980)
T 3ibv_A 519 LVRYAS 524 (980)
T ss_dssp HHHTGG
T ss_pred HHHHHH
Confidence 988765
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.07 E-value=1.3 Score=50.79 Aligned_cols=247 Identities=11% Similarity=-0.004 Sum_probs=137.4
Q ss_pred CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh--cCCCHHHHHHHHHHHHHhcCC------CchHHHHHhcC
Q 012413 189 SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL--KCSDPWTQEHSVTALLNLSLH------ENNKTLITNAG 260 (464)
Q Consensus 189 ~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL--~~~~~~v~~~A~~aL~~La~~------~~~~~~i~~~g 260 (464)
.+...|..|-..|..+-++. .+...+...| .+.++.+|..|+..|.+.... ++.+..|. ..
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ 93 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NS 93 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HH
T ss_pred CChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HH
Confidence 37788999998886664431 2444444433 456889999999999987532 23333322 22
Q ss_pred cHHHHHHHHc---cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC---c--
Q 012413 261 AIKSLVYVLK---TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL---K-- 332 (464)
Q Consensus 261 ~i~~Lv~lL~---~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~---~-- 332 (464)
.+..+...-. .....++...+.++..|+..+-- -...+.++.|++++.+ +...+..++.+|..|+.. .
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~ 169 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQT 169 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccc
Confidence 3333332211 14578999999999998766311 0246778888888876 555677788888888652 1
Q ss_pred --chH-----HHHHHc--CCHHHHHHhhcCC-------------------CHHHHHHHHHHHHHHhCCHhhHHHHHhcC-
Q 012413 333 --QNK-----ERAVSA--GAVRPLVGMLAGQ-------------------GEGMAEKAMVVLSLLAGIAEGREAIVEEN- 383 (464)
Q Consensus 333 --~~~-----~~iv~~--g~v~~Lv~lL~~~-------------------~~~v~~~A~~aL~nLa~~~~~~~~i~~~g- 383 (464)
..+ ..+.+. .+++.+..++... ...+...++.++.+...... ...+.+..
T Consensus 170 ~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~-~~~i~~~~~ 248 (1204)
T 3a6p_A 170 LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS-MSHITAENC 248 (1204)
T ss_dssp SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC-HHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC-HHHHHhccc
Confidence 111 112211 1233333334321 12244455555554443211 12333332
Q ss_pred -cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC--HHhHHHHHHc---CChHHHHHhhh--------cCCHHHHHHHHHHH
Q 012413 384 -GIAALVEAIEDGSVKGKEFAVLTLLQLCAES--VKNRGLLVRE---GGIPPLVALSQ--------TGSVRAKHKAETLL 449 (464)
Q Consensus 384 -~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~--~~~~~~i~~~---g~i~~Lv~lL~--------s~~~~v~~~A~~aL 449 (464)
.++.+..++. ++.++..|+.||..+.... +..+..+... ..+..++..+. ..+.++.++-++++
T Consensus 249 ~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll 326 (1204)
T 3a6p_A 249 KLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVL 326 (1204)
T ss_dssp HHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHH
Confidence 5666665554 5778999999999999754 3333322221 11334444442 11346666777676
Q ss_pred HHhh
Q 012413 450 GYLR 453 (464)
Q Consensus 450 ~~L~ 453 (464)
..++
T Consensus 327 ~~lg 330 (1204)
T 3a6p_A 327 CALG 330 (1204)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=93.03 E-value=1.6 Score=43.52 Aligned_cols=140 Identities=17% Similarity=0.161 Sum_probs=93.8
Q ss_pred cCcHHHHHHHHcc-----------CCHHHHHHHHHHHHHhcccccchhhhhc-cCChHHHHHHhhcCChhhHHHHHHHHH
Q 012413 259 AGAIKSLVYVLKT-----------GTETSKQNAACALMSLALIEENKSSIGA-CGAIPPLVSLLIYGSSRGKKDALTTLY 326 (464)
Q Consensus 259 ~g~i~~Lv~lL~~-----------~~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~A~~aL~ 326 (464)
.+|+..|+.+|.. .+...+..++.+|..+..+..+...+.. ...|..|+..|.+.++.++..++.+|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5677777777742 2457788899999999877666555554 778999999999999999999999999
Q ss_pred HHhcCcc--h-HHHHH----------HcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhCCH---hh----HHHHHhcCcH
Q 012413 327 KLCSLKQ--N-KERAV----------SAGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAGIA---EG----REAIVEENGI 385 (464)
Q Consensus 327 nL~~~~~--~-~~~iv----------~~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~---~~----~~~i~~~g~i 385 (464)
.+|..++ + ...++ +..-+..++..|.. ...+.+..++..+-.+...+ +. |..+...|..
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 9998553 3 44443 23457888888876 34555665666555555432 22 4444455544
Q ss_pred HHHHHHHhc-CCHHH
Q 012413 386 AALVEAIED-GSVKG 399 (464)
Q Consensus 386 ~~Lv~lL~~-~~~~v 399 (464)
+ +++-++. .++.+
T Consensus 268 ~-il~~lr~~~~~~L 281 (383)
T 3eg5_B 268 Q-VLQELREIENEDM 281 (383)
T ss_dssp H-HHHHHTTSCCHHH
T ss_pred H-HHHHHhcCCChhH
Confidence 4 4445664 34443
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=92.84 E-value=3.3 Score=46.87 Aligned_cols=221 Identities=13% Similarity=0.028 Sum_probs=140.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCC-----
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLH----- 249 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~----- 249 (464)
...+..++..+.+++...|..|-..|..+-++ .+++..+..+|.. .++.+|..|+..|.+....
T Consensus 27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s----------p~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L 96 (1073)
T 3gjx_A 27 INLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH----------PDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKIL 96 (1073)
T ss_dssp HHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC----------SCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----------chHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhC
Confidence 46788888999999999999998888655443 2455556666655 6899999999999997652
Q ss_pred CchHHHHHhcCcHHHHHHHHcc-----CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHH
Q 012413 250 ENNKTLITNAGAIKSLVYVLKT-----GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTT 324 (464)
Q Consensus 250 ~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~a 324 (464)
++....-.+...+..+...-.. .++.++...+.++..++...--. ...+.++.++.++.. ++......+.+
T Consensus 97 ~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L~I 172 (1073)
T 3gjx_A 97 PRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNMVI 172 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 2222222333344555444332 35677888888898887652110 246678888888864 34556667777
Q ss_pred HHHHhcC--cc-------h-----HHHHHHc--CCHHHHHHhhc-CCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHH
Q 012413 325 LYKLCSL--KQ-------N-----KERAVSA--GAVRPLVGMLA-GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAA 387 (464)
Q Consensus 325 L~nL~~~--~~-------~-----~~~iv~~--g~v~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~ 387 (464)
|..|... +- . ++.+.+. ..++.+..+|. ..++.+...++.+|+.+..--+ ...+++.+.++.
T Consensus 173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~ll~~ 251 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFETKLIST 251 (1073)
T ss_dssp HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhccchHHHH
Confidence 7777652 10 1 1222221 12233333443 3457777888899998885432 235677787887
Q ss_pred HH-HHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 388 LV-EAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 388 Lv-~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
|+ .++ .++..+..|+.||..+...
T Consensus 252 L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 252 LIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 74 554 5688999999999999875
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=92.65 E-value=0.38 Score=54.35 Aligned_cols=140 Identities=10% Similarity=0.007 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHhccccc-chhhhhccCChHHHHHHhhc-----CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHH
Q 012413 272 GTETSKQNAACALMSLALIEE-NKSSIGACGAIPPLVSLLIY-----GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVR 345 (464)
Q Consensus 272 ~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~~g~i~~Li~lL~~-----~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~ 345 (464)
.+...++.++++++.++.... ....-.-..+++.|+.++.+ +...++..++++|+..+..=.....+.. .++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence 578999999999999987632 22222224467888888864 2344556777888877663211122222 2566
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh----------cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 346 PLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE----------ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 346 ~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~----------~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
.|+..+.++++.++..|++++.+||. ..+..+.. ...+..+.+....-+..-+..+..+++.+....
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 67777777788999999999999995 23333432 112333444444456777788888888888753
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=90.96 E-value=5 Score=39.22 Aligned_cols=157 Identities=10% Similarity=0.059 Sum_probs=108.7
Q ss_pred HHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-CCh
Q 012413 237 EHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-GSS 315 (464)
Q Consensus 237 ~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~ 315 (464)
..+...|.-|-.+.+...-++..+|+..+....+.++.++....+..|...+.....+. .--...+|.+++++.- ++.
T Consensus 261 tR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~L~e~LPFi~~~i~~h~eD 339 (619)
T 3c2g_A 261 IRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TPLENILPFLLRLIEIHPDD 339 (619)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SCCTTHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-ccccccchHHHHHhccCCCc
Confidence 34444444444456777889999999999999999999999999999998865432211 1114567888888875 588
Q ss_pred hhHHHHHHHHHHHhcCcc-hHHHHHHcCCHHHHHHhhcCC-------CHHHHHHHHHHHHHHhC----------------
Q 012413 316 RGKKDALTTLYKLCSLKQ-NKERAVSAGAVRPLVGMLAGQ-------GEGMAEKAMVVLSLLAG---------------- 371 (464)
Q Consensus 316 ~v~~~A~~aL~nL~~~~~-~~~~iv~~g~v~~Lv~lL~~~-------~~~v~~~A~~aL~nLa~---------------- 371 (464)
++.....+.|.|...++. -++..+..|+++.|-..+... +..-+..|+++++|--.
T Consensus 340 dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGq 419 (619)
T 3c2g_A 340 EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGE 419 (619)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSC
T ss_pred ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCc
Confidence 899999999999999885 556667899999998887432 12225555655555311
Q ss_pred ----CHhhHH---HHHhcCcHHHHHHHHhc
Q 012413 372 ----IAEGRE---AIVEENGIAALVEAIED 394 (464)
Q Consensus 372 ----~~~~~~---~i~~~g~i~~Lv~lL~~ 394 (464)
.+.-++ .+++...+..|+.+|.-
T Consensus 420 r~~~G~~EqQQVckFIE~d~LKrLMtCLS~ 449 (619)
T 3c2g_A 420 TKTAGPNEKQQVCKFIEIDILKKLMSCLSC 449 (619)
T ss_dssp CCCCCHHHHHHHHGGGSHHHHHHHHHHHHC
T ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111122 33455678888888874
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=90.90 E-value=5.2 Score=39.09 Aligned_cols=135 Identities=11% Similarity=0.035 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHh-cC
Q 012413 317 GKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIE-DG 395 (464)
Q Consensus 317 v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~-~~ 395 (464)
|...+...|.-|.-.....+-++..+|+..+...+..++.++....+..|...+.....+..-. ...++-++..+. ++
T Consensus 259 VvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 259 VIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCC
Confidence 3445555555555555677889999999999999999999999999999998876443221111 245777777776 78
Q ss_pred CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC-------CHHHHHHHHHHHHHh
Q 012413 396 SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG-------SVRAKHKAETLLGYL 452 (464)
Q Consensus 396 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-------~~~v~~~A~~aL~~L 452 (464)
++++.....+.|.|..++...-++..+..|+|..|...+... +..-+..|++++.+.
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 899999999999999999888888888999999999987542 235566666666543
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=90.79 E-value=10 Score=37.66 Aligned_cols=140 Identities=19% Similarity=0.217 Sum_probs=94.5
Q ss_pred cCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCCCchHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHH
Q 012413 218 SGAVPALVPLLKC-----------SDPWTQEHSVTALLNLSLHENNKTLITN-AGAIKSLVYVLKTGTETSKQNAACALM 285 (464)
Q Consensus 218 ~g~i~~Ll~lL~~-----------~~~~v~~~A~~aL~~La~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 285 (464)
.+|+..|+..|.. .+......++.+|..+..+..+...+.. .+++..|+..|.+.++.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4667777766642 1467788999999999888766665554 778999999999999999999999888
Q ss_pred Hhccccc--c-hhhh----------hccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcch-------HHHHHHcCCH
Q 012413 286 SLALIEE--N-KSSI----------GACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLKQN-------KERAVSAGAV 344 (464)
Q Consensus 286 ~Ls~~~~--~-~~~i----------~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~~~-------~~~iv~~g~v 344 (464)
.+|..++ + ...+ .+..-+..++..+.+. +.+.+..++..+-.|...++. +..+...|..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8887643 3 2222 2345677888888743 566666666666666665442 2344456555
Q ss_pred HHHHHhhcC-CCHHH
Q 012413 345 RPLVGMLAG-QGEGM 358 (464)
Q Consensus 345 ~~Lv~lL~~-~~~~v 358 (464)
+.+ .-|+. .++.+
T Consensus 206 ~il-~~Lr~~~~~~L 219 (386)
T 2bnx_A 206 QVL-QELREIENEDM 219 (386)
T ss_dssp HHH-HHHTTCCCHHH
T ss_pred HHH-HHHhccCChhH
Confidence 554 44443 44444
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=89.23 E-value=3.5 Score=41.03 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHhcccccchhhhhc-cCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc--h-HHHHH---------
Q 012413 273 TETSKQNAACALMSLALIEENKSSIGA-CGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ--N-KERAV--------- 339 (464)
Q Consensus 273 ~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~--~-~~~iv--------- 339 (464)
+......++.+|..|.....+...+.. ..++..|+..|.+.++.++..++..|..+|..++ + ...+.
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 456778889999998877655555554 6789999999988899999999999999998553 4 44432
Q ss_pred -HcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhCCHh-------hHHHHHhcCcHHHHHHHHhc-CCHHHH
Q 012413 340 -SAGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAGIAE-------GREAIVEENGIAALVEAIED-GSVKGK 400 (464)
Q Consensus 340 -~~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~-------~~~~i~~~g~i~~Lv~lL~~-~~~~v~ 400 (464)
+..-+..++..+.. ...+.+..++..+-.|...++ .|..+...| +..+++-++. .++.+.
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G-L~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDMK 220 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-HHHHHHHHTTCCCHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCChhHH
Confidence 23466778888864 345556555655555554332 244455555 4445555554 445443
|
| >3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.44 E-value=9.1 Score=36.61 Aligned_cols=136 Identities=12% Similarity=0.060 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHh--cCcHHHH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIG-ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITN--AGAIKSL 265 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~-~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~--~g~i~~L 265 (464)
+...-..|+..|-.++.+-...-+.+. +...+..|+ +.....+.+++.|+.+|+...++ |+....|.+ ...+..+
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 444567788888888876333333332 333444444 44557788999999999998875 666555554 4455555
Q ss_pred HHHHcc-------CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC--ChhhHHHHHHHHHHHhc
Q 012413 266 VYVLKT-------GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG--SSRGKKDALTTLYKLCS 330 (464)
Q Consensus 266 v~lL~~-------~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~A~~aL~nL~~ 330 (464)
+.-|.. ....++..-+.+|-.|...+. .+ ...++..|++++... ++.++..++..+..+-.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 544433 345677777888888877652 22 245678899888877 88999999988877753
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.30 E-value=27 Score=39.94 Aligned_cols=255 Identities=13% Similarity=0.070 Sum_probs=139.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcc-----CchhHHHHHhcCChHHHHHhhc---CCCHHHHHHHHHHHHHhcCCCchHHHHHh
Q 012413 187 QSSSVAIKRSAAAKLRLLAKN-----RSDNRVLIGESGAVPALVPLLK---CSDPWTQEHSVTALLNLSLHENNKTLITN 258 (464)
Q Consensus 187 ~s~~~~vr~~A~~~L~~La~~-----~~~~r~~i~~~g~i~~Ll~lL~---~~~~~v~~~A~~aL~~La~~~~~~~~i~~ 258 (464)
.+.++.+|..|+..|.+..+. +++.+..+ +...+..+...-. +..+.++...+.++..++..+-... =
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~---W 132 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH---W 132 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT---C
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc---c
Confidence 456788999999999877643 22333333 3334444443321 1458899999999999886421100 1
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhccc---c----cch-----hhhhccCChHHHH----HHhhc----------
Q 012413 259 AGAIKSLVYVLKTGTETSKQNAACALMSLALI---E----ENK-----SSIGACGAIPPLV----SLLIY---------- 312 (464)
Q Consensus 259 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~---~----~~~-----~~i~~~g~i~~Li----~lL~~---------- 312 (464)
.+.++.|+.+++. ++..+..++.+|..|+.. . ..+ ..+.+. ++.++ .++.+
T Consensus 133 p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~--~~~I~~~~~~iL~~~~~~~~~~~~ 209 (1204)
T 3a6p_A 133 PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN--MERIFSFLLNTLQENVNKYQQVKT 209 (1204)
T ss_dssp TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccc
Confidence 4678888888876 556677788888887643 1 111 112111 34443 33332
Q ss_pred ---------CChhhHHHHHHHHHHHhcCcchHHHHHHcC--CHHHHHHhhcCCCHHHHHHHHHHHHHHhCC---HhhHHH
Q 012413 313 ---------GSSRGKKDALTTLYKLCSLKQNKERAVSAG--AVRPLVGMLAGQGEGMAEKAMVVLSLLAGI---AEGREA 378 (464)
Q Consensus 313 ---------~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g--~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~---~~~~~~ 378 (464)
.+..++..++.++.+....-.. ..+++.. .++.+..++. ++.++..|+.+|..+... ++.+..
T Consensus 210 ~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~ 286 (1204)
T 3a6p_A 210 DTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKP 286 (1204)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGG
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHH
Confidence 1234566677777655543221 2223322 6677776665 356789999999999942 233333
Q ss_pred HHh---cCcHHHHHHHHh--------cCCHHHHHHHHHHHHHHhhcCHHhHHHHHH----------cCChHHHHHhhhcC
Q 012413 379 IVE---ENGIAALVEAIE--------DGSVKGKEFAVLTLLQLCAESVKNRGLLVR----------EGGIPPLVALSQTG 437 (464)
Q Consensus 379 i~~---~g~i~~Lv~lL~--------~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~----------~g~i~~Lv~lL~s~ 437 (464)
++. ...+..++.... +.+.++...-+..+..++.. ....+.. .+.++.++.+..++
T Consensus 287 li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~---l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~ 363 (1204)
T 3a6p_A 287 LMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ---LCALLGADSDVETPSNFGKYLESFLAFTTHP 363 (1204)
T ss_dssp GGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH---HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS
T ss_pred HHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH---HHHHHhccccccChhHHHHHHHHHHHHHhCc
Confidence 332 112445555542 11345555666666666521 1111110 13467777777777
Q ss_pred CHHHHHHHHHHHHHhhc
Q 012413 438 SVRAKHKAETLLGYLRE 454 (464)
Q Consensus 438 ~~~v~~~A~~aL~~L~~ 454 (464)
+..+-..+...-..+.+
T Consensus 364 ~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 364 SQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp CHHHHHHHHHHHHHHHS
T ss_pred cHHhHHHHHHHHHHHHh
Confidence 76766666554433433
|
| >3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.72 E-value=17 Score=33.77 Aligned_cols=102 Identities=12% Similarity=0.074 Sum_probs=67.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--------CCHHHHHHHHHHHHHhcCCC-chHHHH
Q 012413 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--------SDPWTQEHSVTALLNLSLHE-NNKTLI 256 (464)
Q Consensus 186 L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--------~~~~v~~~A~~aL~~La~~~-~~~~~i 256 (464)
+.+.++..+.-+++++.|+-.+..-.++.+........++..+.+ .+..++..++..+.|++..- ..+.
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-- 176 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 176 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--
Confidence 335678899999999999999855356666544334444544322 25678899999999997520 0000
Q ss_pred HhcCcHHHHHHHHcc---------CCHHHHHHHHHHHHHhccc
Q 012413 257 TNAGAIKSLVYVLKT---------GTETSKQNAACALMSLALI 290 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~---------~~~~v~~~a~~aL~~Ls~~ 290 (464)
+......++.++.. .+++....++-+|++|...
T Consensus 177 -~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 177 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp -CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 12344556666652 3778999999999998754
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=80.01 E-value=4.2 Score=35.25 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=59.4
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNR-SDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~-~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La 247 (464)
...++..|.+.|++.++.++..|+..|-.+.++. ......+.+...+..|+.++.. .++.|+..++..|..-+
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 3568888899999999999999999999998884 4456666667788888888876 67899999888876654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 464 | ||||
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-19 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-14 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 9e-11 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-06 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 7e-05 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-19 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-17 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-17 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-16 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-12 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-12 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-10 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-09 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 5e-13 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 1e-09 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 2e-05 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-12 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-05 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-05 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 5e-05 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 6e-06 |
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.7 bits (218), Expect = 1e-19
Identities = 41/300 (13%), Positives = 76/300 (25%), Gaps = 33/300 (11%)
Query: 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237
T+ + L S + A ++ + + + G + LV LL+ + Q+
Sbjct: 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 238 HSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSS 296
+ AL NL NK I+ V +L+ Q L+ +
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 297 IGACGAIPPLVSLLI----------------YGSSRGKKDALTTLYKLCSLKQNKERAV- 339
A+P L +I +A L L S ++
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182
Query: 340 SAGAVRPLVGMLAGQGEGMAEKAMVVLSLL---------------AGIAEGREAIVEENG 384
+G + L+ + V + + +
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+ + S K L + K G L I + L A +
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.6 bits (176), Expect = 2e-14
Identities = 33/323 (10%), Positives = 88/323 (27%), Gaps = 31/323 (9%)
Query: 160 ENFSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESG 219
+ + + + + + +A LR L+ + + + SG
Sbjct: 126 ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSG 185
Query: 220 AVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT---------------LITNAGAIKS 264
+ +L+ ++ ++ + + + N NA KS
Sbjct: 186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKS 245
Query: 265 LVYVLKTGTETSK-QNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALT 323
++ N C L + + AI ++L+ +A
Sbjct: 246 STGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACA 305
Query: 324 TLYKLCSLKQ-------NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGR 376
+ + + ++ + + + +L + +LS ++
Sbjct: 306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH 365
Query: 377 EAIVEENGIAALVEAIEDG------SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPL 430
+ + + + S A T+ L A + + +
Sbjct: 366 RVMGNQ-VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424
Query: 431 VALSQ-TGSVRAKHKAETLLGYL 452
+ L + + S +A A LL +
Sbjct: 425 INLCRSSASPKAAEAARLLLSDM 447
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (147), Expect = 9e-11
Identities = 36/351 (10%), Positives = 85/351 (24%), Gaps = 48/351 (13%)
Query: 72 SVIDMRLGELASKTNDAKSVKSTISEDDYLNVSQAFSDFSVCSSDISGELQRLASLPSPE 131
S ++ + D + + L+ + A S + L
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200
Query: 132 NILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSSSV 191
+ + NC L T + T K + S
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRL-----DAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSD 255
Query: 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDP-------WTQEHSVTALL 244
+ + + + S A+ + L+ S ++TA
Sbjct: 256 KMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315
Query: 245 NLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIP 304
L ++ + + + +L++G ++ A L +++ +G P
Sbjct: 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFP 374
Query: 305 PLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMV 364
+ LL + ++
Sbjct: 375 EVTRLLTSHTGNTSNSEDILSSACYTV--------------------------------- 401
Query: 365 VLSLLAGIAEGREAIVEENGIAALVEAIED-GSVKGKEFAVLTLLQLCAES 414
+L+A + + + + ++ S K E A L L + +
Sbjct: 402 -RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (113), Expect = 1e-06
Identities = 15/120 (12%), Positives = 37/120 (30%), Gaps = 3/120 (2%)
Query: 140 NNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQ--SSSVAIKRSA 197
Q+ L + + + + ++ S+S I SA
Sbjct: 338 RLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSA 397
Query: 198 AAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSD-PWTQEHSVTALLNLSLHENNKTLI 256
+R L ++ S + ++ L + S P E + L ++ + + ++
Sbjct: 398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL 457
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 7e-05
Identities = 13/68 (19%), Positives = 25/68 (36%)
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
I V+ + K + + C + + + + GGI LV L ++ + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 445 AETLLGYL 452
A L L
Sbjct: 64 AAGALRNL 71
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.6 bits (215), Expect = 3e-19
Identities = 44/192 (22%), Positives = 64/192 (33%), Gaps = 19/192 (9%)
Query: 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEH 238
+ + + L S A L N + E GA+P LV LL + TQ
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 416
Query: 239 SVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG 298
+ E + E + AL LA N+ I
Sbjct: 417 TSMGGTQQQFVEGVRM-------------------EEIVEGCTGALHILARDVHNRIVIR 457
Query: 299 ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGM 358
IP V LL ++ A L +L K+ E + GA PL +L + EG+
Sbjct: 458 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGV 517
Query: 359 AEKAMVVLSLLA 370
A A VL ++
Sbjct: 518 ATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.2 bits (201), Expect = 2e-17
Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 3/154 (1%)
Query: 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNKTLITNAGAIKSLVYVLKTGTETSK 277
A+P L LL D + + LS E + ++ + + ++V ++ +
Sbjct: 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76
Query: 278 Q-NAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQNK 335
A L +L+ E +I G IP LV +L A+TTL+ L + K
Sbjct: 77 ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136
Query: 336 ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLL 369
AG ++ +V +L L +L
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.1 bits (198), Expect = 4e-17
Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 2/146 (1%)
Query: 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALL 244
L + AA + L+K + ++ V A+V ++ +D T + L
Sbjct: 26 LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLH 85
Query: 245 NLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA-CGAI 303
NLS H I +G I +LV +L + ++ A L +L L +E G +
Sbjct: 86 NLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGL 145
Query: 304 PPLVSLLIYGSSRGKKDALTTLYKLC 329
+V+LL + + L L
Sbjct: 146 QKMVALLNKTNVKFLAITTDCLQILA 171
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.4 bits (191), Expect = 3e-16
Identities = 39/195 (20%), Positives = 64/195 (32%), Gaps = 20/195 (10%)
Query: 217 ESGAVPALVPLLKCSDPWT-QEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTET 275
+P +V LL W + +V + NL+L N + GAI LV +L +
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412
Query: 276 SKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK 335
+++ + +E + G L+ L N+
Sbjct: 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCT-------------------GALHILARDVHNR 453
Query: 336 ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDG 395
+ V +L E + A VL LA E EAI E A L E +
Sbjct: 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR 513
Query: 396 SVKGKEFAVLTLLQL 410
+ +A L ++
Sbjct: 514 NEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.8 bits (161), Expect = 2e-12
Identities = 35/205 (17%), Positives = 66/205 (32%), Gaps = 21/205 (10%)
Query: 249 HENNKTLITNAGAIKSLVYVLKTGT-ETSKQNAACALMSLALIEENKSSIGACGAIPPLV 307
E + + + +V +L + + + +LAL N + + GAIP LV
Sbjct: 344 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 403
Query: 308 SLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLS 367
LL+ ++ + ++ + E + E L
Sbjct: 404 QLLVRAHQDTQRRTSMGGTQQQFVEGVRM-------------------EEIVEGCTGALH 444
Query: 368 LLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGI 427
+LA R I N I V+ + + A L +L + + + EG
Sbjct: 445 ILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-EAAEAIEAEGAT 503
Query: 428 PPLVALSQTGSVRAKHKAETLLGYL 452
PL L + + A +L +
Sbjct: 504 APLTELLHSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.5 bits (160), Expect = 2e-12
Identities = 38/197 (19%), Positives = 78/197 (39%), Gaps = 5/197 (2%)
Query: 242 ALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGAC- 300
A++NL ++++ L T AI L +L + AA + L+ E ++ +I
Sbjct: 1 AVVNLINYQDDAELAT--RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58
Query: 301 GAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMA 359
+ +V + + TL+ L ++ +G + LV ML + +
Sbjct: 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118
Query: 360 EKAMVVLS-LLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNR 418
A+ L LL + A+ G+ +V + +VK L L + +++
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178
Query: 419 GLLVREGGIPPLVALSQ 435
+++ GG LV + +
Sbjct: 179 LIILASGGPQALVNIMR 195
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.3 bits (144), Expect = 2e-10
Identities = 62/269 (23%), Positives = 109/269 (40%), Gaps = 7/269 (2%)
Query: 179 VKICIDGLQSS-SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237
V + +Q++ V R A L L+ +R + + I +SG +PALV +L
Sbjct: 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 119
Query: 238 HSVTALLNLSLHENNKTLIT-NAGAIKSLVYVLKTGTETSKQNAACALMSLAL-IEENKS 295
+++T L NL LH+ + AG ++ +V +L L LA +E+K
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179
Query: 296 SIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQ 354
I A G LV+++ + + + K+ S+ NK V AG ++ L L
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 239
Query: 355 GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414
+ + + + L L+ A + E + LV+ + + A L L +
Sbjct: 240 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297
Query: 415 VKNRGLLVREGGIPPLVALSQTGSVRAKH 443
KN+ ++ + GGI LV R
Sbjct: 298 YKNKMMVCQVGGIEALVRTVLRAGDREDI 326
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (136), Expect = 2e-09
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 328 LCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIV-EENGIA 386
L + + + E A A+ L +L + + + KA V++ L+ R AI+ ++
Sbjct: 5 LINYQDDAELA--TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 62
Query: 387 ALVEAIED-GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKA 445
A+V +++ V+ TL L + + + GGIP LV + + A
Sbjct: 63 AIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 121
Query: 446 ETLLGY 451
T L
Sbjct: 122 ITTLHN 127
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.6 bits (166), Expect = 5e-13
Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 5/209 (2%)
Query: 160 ENFSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLR-LLAKNRSDNRVLIGES 218
E+ S+ + LQ + L S + + SA K R +L++ ++ ++
Sbjct: 59 EDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQA 118
Query: 219 GAVPALVPLLKCSDPWT-QEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETS 276
G VP LV ++ + P Q + AL N++ ++ +A A+ + +L TG+
Sbjct: 119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 178
Query: 277 KQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN- 334
K+ A AL ++A + + + C A+ P++ L + A TL LC K+
Sbjct: 179 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 238
Query: 335 KERAVSAGAVRPLVGMLAGQGEGMAEKAM 363
+ +V + A+ L ++ A
Sbjct: 239 PDWSVVSQALPTLAKLIYSMDTETLVDAC 267
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.8 bits (138), Expect = 1e-09
Identities = 53/281 (18%), Positives = 106/281 (37%), Gaps = 7/281 (2%)
Query: 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEH 238
V + I L + SV +K A L +A + +D R + + A+ ++ L + P
Sbjct: 164 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 223
Query: 239 SVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSI 297
+ L NL + + A+ +L ++ + + +A A+ L+ +
Sbjct: 224 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQA 283
Query: 298 GACGAIPPLVSLLIYGSSRGKKDALTTLYK--LCSLKQNKERAVSAGAVRPLVGMLAGQG 355
IP + L+ S + + + ++AG + L +L+
Sbjct: 284 VIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK 343
Query: 356 EGM-AEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414
E + E + ++ AG E +A+++ N I LV+ +E K K+ A + +
Sbjct: 344 ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 403
Query: 415 VKNRG---LLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452
++ LV +G I PL L + R L +
Sbjct: 404 LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 444
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
Query: 182 CIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVT 241
++ L S ++ A + + ++ +G +PAL LL ++ +
Sbjct: 293 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 352
Query: 242 ALLNL-SLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA- 299
+ N+ + + + +A I LV +L+ +K+ A A+ + + + I
Sbjct: 353 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY 412
Query: 300 ---CGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334
G I PL LL +R + L L + + +
Sbjct: 413 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 450
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.4 bits (160), Expect = 2e-12
Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 10/184 (5%)
Query: 178 TVKICIDGLQSSSVAIKRSAAAKLR-LLAKNRSDNRVLIGESGAVPALVPLLKCSD-PWT 235
+V+ + G+ S+++ + A R LL++ + I +G +P V L +D
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 236 QEHSVTALLNLSLHE-NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EEN 293
Q S AL N++ + + GAI + + +L + + A AL ++A
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 294 KSSIGACGAIPPLVSLLIYGSSRGKKD-----ALTTLYKLCSLK-QNKERAVSAGAVRPL 347
+ + GAI PL++LL TL LC K + L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 348 VGML 351
V +L
Sbjct: 194 VRLL 197
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 54/327 (16%), Positives = 105/327 (32%), Gaps = 53/327 (16%)
Query: 179 VKICIDGLQSSSVA-IKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237
+ + L + + I+ +A L +A S+ + + GA+PA + LL E
Sbjct: 58 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 117
Query: 238 HSVTALLNL-SLHENNKTLITNAGAIKSLVYVL-----KTGTETSKQNAACALMSLALIE 291
+V AL N+ + L+ GAI L+ +L T +N L +L +
Sbjct: 118 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 177
Query: 292 ENKSSIGAC-GAIPPLVSLLIYGSSRGKKDAL---------------------------- 322
+ A +P LV LL + D+
Sbjct: 178 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 237
Query: 323 ---------------TTLYKLCSLKQNKERAVSAGAVRPLVGMLA-GQGEGMAEKAMVVL 366
+ + ++ + AGA+ +L + E +
Sbjct: 238 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 297
Query: 367 SLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE-SVKNRGLLVREG 425
++ AG + + +V + LV + K ++ A + + +V+ LV G
Sbjct: 298 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 357
Query: 426 GIPPLVALSQTGSVRAKHKAETLLGYL 452
I PL+ L + + +
Sbjct: 358 IIEPLMNLLSAKDTKIIQVILDAISNI 384
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.0 bits (102), Expect = 2e-05
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 161 NFSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRS-DNRVLIGESG 219
N + + I V + L + ++ AA + + + V + G
Sbjct: 298 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 357
Query: 220 AVPALVPLLKCSDPWTQEHSVTALLNL-----SLHENNK--TLITNAGAIKSL 265
+ L+ LL D + + A+ N+ L E K +I G + +
Sbjct: 358 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 410
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.3 bits (100), Expect = 5e-05
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 3/133 (2%)
Query: 205 AKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIK 263
+ + ++GA+ LL Q+ + + N++ + + N G +
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 317
Query: 264 SLVYVLKTGTETSKQNAACALMSLAL--IEENKSSIGACGAIPPLVSLLIYGSSRGKKDA 321
LV VL +++ AA A+ + E + CG I PL++LL ++ +
Sbjct: 318 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 377
Query: 322 LTTLYKLCSLKQN 334
L + + +
Sbjct: 378 LDAISNIFQAAEK 390
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 6e-06
Identities = 33/188 (17%), Positives = 66/188 (35%), Gaps = 4/188 (2%)
Query: 269 LKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRG-KKDALTTLYK 327
+ + ++ A L L +N + + LV + + G + A +
Sbjct: 26 EQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT 85
Query: 328 LC-SLKQNKERAVSAGAVRPLVGMLAGQGEGMAEK--AMVVLSLLAGIAEGREAIVEENG 384
++ +E+ + GA+R L+ +L + L+ G + +G
Sbjct: 86 CSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDG 145
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+ L+ A++ K K + L L +++G L G + LVAL +T
Sbjct: 146 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEH 205
Query: 445 AETLLGYL 452
L L
Sbjct: 206 VLGALCSL 213
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.96 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.96 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.95 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.95 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.85 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.85 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.48 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.4 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.38 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.37 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.25 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.18 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.98 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.96 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.91 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.89 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.73 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.66 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.65 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 98.63 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.62 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.6 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.58 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 98.35 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 98.13 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.95 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.92 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.68 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 96.8 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 96.78 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 96.61 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 95.19 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 92.31 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 91.13 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 89.23 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 88.21 |
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.4e-28 Score=253.65 Aligned_cols=323 Identities=21% Similarity=0.206 Sum_probs=277.9
Q ss_pred CcchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCC
Q 012413 94 TISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISP 172 (464)
Q Consensus 94 ~~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~ 172 (464)
-+..++++.|.+++.+ ++.+|..++..++.++..........
T Consensus 13 ~~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~------------------------------------- 55 (529)
T d1jdha_ 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM------------------------------------- 55 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHH-------------------------------------
Confidence 3456889999999988 88899999999999864322111111
Q ss_pred CCchHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-C
Q 012413 173 EDLQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-E 250 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~ 250 (464)
...+.|+.+++.|++ .++++++.|+.+|.+++.+ ++.+..+++.|+++.|+.+|++++++++..|+++|.+++.+ +
T Consensus 56 -~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~ 133 (529)
T d1jdha_ 56 -RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133 (529)
T ss_dssp -TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT
T ss_pred -HhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc
Confidence 114678888888865 6789999999999999976 78888899999999999999999999999999999999986 5
Q ss_pred chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHH
Q 012413 251 NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKL 328 (464)
Q Consensus 251 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL 328 (464)
..+..+.+.|++|.|+.+|++++..++..++++|.+++.. .+.+..+.+.|+++.|+.++... ...++..+++++.++
T Consensus 134 ~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~l 213 (529)
T d1jdha_ 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213 (529)
T ss_dssp THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 6677888999999999999999999999999999999976 46778888999999999999875 567889999999999
Q ss_pred hcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 012413 329 CSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLL 408 (464)
Q Consensus 329 ~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 408 (464)
+.+++++..+++.|+++.|+.++.+++..++..++++|.+++..... .....|+++.|++++.+++..++..|+++|+
T Consensus 214 s~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~--~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~ 291 (529)
T d1jdha_ 214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred hccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc--hhhhhhcchhhhhhcccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999854332 2223578999999999999999999999999
Q ss_pred HHhhcCHHhHHHHHHcCChHHHHHhhhc--CCHHHHHHHHHHHHHhhcCCC
Q 012413 409 QLCAESVKNRGLLVREGGIPPLVALSQT--GSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 409 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~s--~~~~v~~~A~~aL~~L~~~~~ 457 (464)
+|+..++.++..+.+.|+++.|+.++.. +.++++..|.++|++++....
T Consensus 292 ~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~ 342 (529)
T d1jdha_ 292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342 (529)
T ss_dssp HHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred hhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhh
Confidence 9999999999999999999999999854 567999999999999985543
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=5.6e-27 Score=236.88 Aligned_cols=352 Identities=17% Similarity=0.164 Sum_probs=293.7
Q ss_pred CCcchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCc--hhhhhcCcccCcccccCCCchhhhhhhcccCchh-----
Q 012413 93 STISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSP--ENILRQPNENNCQAELEPEPEPCLGFLQRENFST----- 164 (464)
Q Consensus 93 ~~~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~--~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~----- 164 (464)
....++.+++|.+.+.+ ++..+..|..++.++.+.... ...+...| .+|.+ +..|+..++.+
T Consensus 8 ~~~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g-------~i~~L---v~lL~~~~~~~v~~~a 77 (434)
T d1q1sc_ 8 QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG-------LIPKF---VSFLGKTDCSPIQFES 77 (434)
T ss_dssp TSSSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTT-------CHHHH---HHHTTCGGGHHHHHHH
T ss_pred cchhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCC-------CHHHH---HHHHccCCCHHHHHHH
Confidence 44578899999999987 888899999999998765543 34566555 45555 66665433211
Q ss_pred -hHhhhcCCCC--------chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCC---
Q 012413 165 -EIIESISPED--------LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSD--- 232 (464)
Q Consensus 165 -~i~~~~~~~~--------~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~--- 232 (464)
.++..+.... -.+.++.++..|.++++.+++.|+++|.+++.+++..+..+.+.|+++.|+.++...+
T Consensus 78 ~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~ 157 (434)
T d1q1sc_ 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLST 157 (434)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGG
T ss_pred HHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhccccc
Confidence 1111111111 0257888999999999999999999999999999999999999999999999998743
Q ss_pred --HHHHHHHHHHHHHhcCCC-chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHH
Q 012413 233 --PWTQEHSVTALLNLSLHE-NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVS 308 (464)
Q Consensus 233 --~~v~~~A~~aL~~La~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~ 308 (464)
......+++++.+++.+. .........+.++.|+.++++++++++..++++|.+++.++ +....+...|+++.|++
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ 237 (434)
T d1q1sc_ 158 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 237 (434)
T ss_dssp SCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhccc
Confidence 356678889999998864 33344456778999999999999999999999999999875 45666778999999999
Q ss_pred HhhcCChhhHHHHHHHHHHHhcCc-chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHH
Q 012413 309 LLIYGSSRGKKDALTTLYKLCSLK-QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEENGIA 386 (464)
Q Consensus 309 lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~ 386 (464)
++.+++..++..++.+|.+++... +.+..+++.|+++.|+.++.+++.+++..++++|.+|+. .......+.+.|+++
T Consensus 238 ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~ 317 (434)
T d1q1sc_ 238 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 317 (434)
T ss_dssp HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred ccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHH
Confidence 999999999999999999999854 567888899999999999999999999999999999995 667788889999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 387 ALVEAIEDGSVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 387 ~Lv~lL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.+++++.+.+..++..|+++|++++.. +.+....+.+.|++++|+.++.+++++++..+.++|.+|.+
T Consensus 318 ~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~ 386 (434)
T d1q1sc_ 318 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 386 (434)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999976 45667779999999999999999999999999999998865
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.8e-26 Score=239.23 Aligned_cols=280 Identities=16% Similarity=0.162 Sum_probs=254.9
Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHH
Q 012413 177 PTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKT 254 (464)
Q Consensus 177 ~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~ 254 (464)
+.++.|+..|+. .++.++..|+++|.+++.+++.....+.+.|+++.++.+|.+++.+++..|+++|+||+.+ ++.+.
T Consensus 119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~ 198 (503)
T d1wa5b_ 119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 198 (503)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHH
Confidence 467777888875 5788999999999999998888888888999999999999999999999999999999985 68899
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc-chhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc-
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE-NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK- 332 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~- 332 (464)
.+.+.|+++.|+.++.+.+..++..++|+|.+++.+.. ........+++|.|+.++.+.+..++..++++|.+|+...
T Consensus 199 ~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~ 278 (503)
T d1wa5b_ 199 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 278 (503)
T ss_dssp HHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCc
Confidence 99999999999999999999999999999999998743 3444455788999999999999999999999999999854
Q ss_pred chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 333 QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 333 ~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
+....+++.|+++.++.++.+++..++..++.+|++++. .+.....+.+.|+++.|..++.++++.++..++|+|+|++
T Consensus 279 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~ 358 (503)
T d1wa5b_ 279 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 358 (503)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 566788899999999999999999999999999999994 5666777888999999999999999999999999999999
Q ss_pred hcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 412 AESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 412 ~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
..++.....+.+.|+++.++.++.+++.+++..|+|+|.++..+.
T Consensus 359 ~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~ 403 (503)
T d1wa5b_ 359 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 403 (503)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999998654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=2.1e-26 Score=232.57 Aligned_cols=283 Identities=19% Similarity=0.200 Sum_probs=244.4
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-CchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCC-C
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKN-RSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLH-E 250 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~-~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~-~ 250 (464)
.....|+.+++.|++++++.+..|+.+|+++... .......+.+.|++|.|+++|++ ++++++..|+++|.+++.. +
T Consensus 10 ~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~ 89 (434)
T d1q1sc_ 10 TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 89 (434)
T ss_dssp SSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCH
T ss_pred hhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCh
Confidence 4456888999999999999999999999988543 23335678899999999999976 6789999999999999875 5
Q ss_pred chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCCh--------------------------
Q 012413 251 NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAI-------------------------- 303 (464)
Q Consensus 251 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i-------------------------- 303 (464)
+.+..+.+.|++|.|+.+|++++.+++..|+++|.+|+.+ ++.+..+.+.|++
T Consensus 90 ~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 169 (434)
T d1q1sc_ 90 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 169 (434)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred hhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHH
Confidence 7888999999999999999999999999999999999875 3445444444444
Q ss_pred ---------------------HHHHHHhhcCChhhHHHHHHHHHHHhcCc-chHHHHHHcCCHHHHHHhhcCCCHHHHHH
Q 012413 304 ---------------------PPLVSLLIYGSSRGKKDALTTLYKLCSLK-QNKERAVSAGAVRPLVGMLAGQGEGMAEK 361 (464)
Q Consensus 304 ---------------------~~Li~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~ 361 (464)
+.|+.++.++++.++..++++|.+|+.++ +....+...|+++.|+.++.+++..++..
T Consensus 170 l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~ 249 (434)
T d1q1sc_ 170 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 249 (434)
T ss_dssp HHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhc
Confidence 34455555667778888999999998865 45566677999999999999999999999
Q ss_pred HHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHH
Q 012413 362 AMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVR 440 (464)
Q Consensus 362 A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~ 440 (464)
++.+|.+++. .+..+..+++.|+++.|+.++.+.++.++..|+++|++|+...+.....+.+.|+++.|+.++.++++.
T Consensus 250 al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~ 329 (434)
T d1q1sc_ 250 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 329 (434)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHH
T ss_pred hhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChH
Confidence 9999999995 567788899999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 012413 441 AKHKAETLLGYLREPR 456 (464)
Q Consensus 441 v~~~A~~aL~~L~~~~ 456 (464)
++..|+|+|.++..+.
T Consensus 330 v~~~a~~~l~nl~~~~ 345 (434)
T d1q1sc_ 330 TQKEAAWAITNYTSGG 345 (434)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998654
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=9.8e-26 Score=233.59 Aligned_cols=278 Identities=21% Similarity=0.193 Sum_probs=249.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-chHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-~~~~~ 255 (464)
+.++.++..|.+++.+++..|+++|++++.+++.++..+.+.|+++.|+.++.+.++.++..++++|.+++.+. .....
T Consensus 162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~ 241 (503)
T d1wa5b_ 162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 241 (503)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCH
T ss_pred CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHH
Confidence 46667788889999999999999999999999999999999999999999999999999999999999999864 33444
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc-c
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK-Q 333 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~-~ 333 (464)
....+++|.|+.++.+++.+++..++|+|.+++... +....+.+.|+++.++.++.+++..++..++.+|++++... .
T Consensus 242 ~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~ 321 (503)
T d1wa5b_ 242 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL 321 (503)
T ss_dssp HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999764 55677889999999999999999999999999999999855 4
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
....+++.|+++.|..++.++++.++..++++|.|++ .++.....+++.|+++.+++++.+.+.+++..|+|+|.+++.
T Consensus 322 ~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~ 401 (503)
T d1wa5b_ 322 QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 401 (503)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHh
Confidence 5566778999999999999999999999999999998 567788889999999999999999999999999999999996
Q ss_pred cC---HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 413 ES---VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 413 ~~---~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.. ++....+.+.|++++|+.+|...++++...+..+|.+|-+
T Consensus 402 ~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~ 446 (503)
T d1wa5b_ 402 GGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 446 (503)
T ss_dssp HTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 53 3445678899999999999999999999999999888753
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.2e-26 Score=241.94 Aligned_cols=276 Identities=23% Similarity=0.206 Sum_probs=246.1
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH-hcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG-ESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~-~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~ 253 (464)
..+|+.|++.|++.+..++..|+.+|..++.+ +..+..+. ..|+++.|+.+|++ .++++++.|+.+|.+|+.+++++
T Consensus 16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (529)
T d1jdha_ 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 35789999999999999999999999999987 44445554 45789999999976 67999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-C
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-L 331 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~ 331 (464)
..+++.|++|.|+.+|++++++++..|+++|.+|+.+. ..+..+.+.|+||.|+.+|.++++.++..++++|.+++. .
T Consensus 95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 174 (529)
T d1jdha_ 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999885 456778899999999999999999999999999999998 4
Q ss_pred cchHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 012413 332 KQNKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQL 410 (464)
Q Consensus 332 ~~~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L 410 (464)
++.+..+.+.|+++.|+.++... ...++..+++++.+++..++++..+++.|+++.|+.++.+.+..++..++++|.++
T Consensus 175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~l 254 (529)
T d1jdha_ 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhc
Confidence 56778888999999999999654 46789999999999999999999999999999999999999999999999999999
Q ss_pred hhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 411 CAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 411 ~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
...... .....|+++.|+.++.++++.++..|+++|++++..
T Consensus 255 s~~~~~---~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~ 296 (529)
T d1jdha_ 255 SDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred cccccc---hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccc
Confidence 854321 222357899999999999999999999999999854
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.6e-23 Score=207.16 Aligned_cols=322 Identities=15% Similarity=0.101 Sum_probs=255.7
Q ss_pred HHHHHHhhhhh-cccchhhhHHHHHHhhcC-CCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCCch
Q 012413 99 DYLNVSQAFSD-FSVCSSDISGELQRLASL-PSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQ 176 (464)
Q Consensus 99 ~~~~L~~ll~~-~~~~r~~a~~~l~~la~~-~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~ 176 (464)
.++.|.++|++ ++.++..++.+|+.+|.. ++....+.. .
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~---------------------------------------~ 43 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ---------------------------------------L 43 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHH---------------------------------------T
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---------------------------------------C
Confidence 36889999998 999999999999999643 223322221 3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
+.|+.|+++|+++++++|..|+++|.+++.+++.++..+.+.|+++.|+.++.+ .+++++..|+++|.+++.++..+..
T Consensus 44 g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 123 (457)
T d1xm9a1 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHH
Confidence 678888999999999999999999999999989999999999999999998876 7889999999999999998877776
Q ss_pred HHhcCcHHHHHHHH---------------ccCCHHHHHHHHHHHHHhcccccchhhhhc-cCChHHHHHHhh--------
Q 012413 256 ITNAGAIKSLVYVL---------------KTGTETSKQNAACALMSLALIEENKSSIGA-CGAIPPLVSLLI-------- 311 (464)
Q Consensus 256 i~~~g~i~~Lv~lL---------------~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~g~i~~Li~lL~-------- 311 (464)
+...|..+.+..++ ...+..++..++++|.+++.+.+++..... .|+++.|+.++.
T Consensus 124 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~ 203 (457)
T d1xm9a1 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRC 203 (457)
T ss_dssp HHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCT
T ss_pred HHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhh
Confidence 66654433333322 334778999999999998877665544433 455555554442
Q ss_pred --------------------------------------------------------------------------------
Q 012413 312 -------------------------------------------------------------------------------- 311 (464)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (464)
T Consensus 204 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (457)
T d1xm9a1 204 DDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD 283 (457)
T ss_dssp TCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHH
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhc
Confidence
Q ss_pred ----------c-CChhhHHHHHHHHHHHhcCcc------hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHh
Q 012413 312 ----------Y-GSSRGKKDALTTLYKLCSLKQ------NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE 374 (464)
Q Consensus 312 ----------~-~~~~v~~~A~~aL~nL~~~~~------~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~ 374 (464)
. .++.++..+.+++.+++.... .+..+.+.|+++.|+.++.+++..++..++++|++|+.++.
T Consensus 284 ~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~ 363 (457)
T d1xm9a1 284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh
Confidence 1 123344456667777766432 23344568999999999999999999999999999999998
Q ss_pred hHHHHHhcCcHHHHHHHHhc------CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC-CHHHHHHHHH
Q 012413 375 GREAIVEENGIAALVEAIED------GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG-SVRAKHKAET 447 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~ 447 (464)
++..+.+ ++++.|+.++.. .+++++..|+.+|++|+..++.++..+.+.|+++.|+.++++. ++.+++.|++
T Consensus 364 ~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~ 442 (457)
T d1xm9a1 364 LHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442 (457)
T ss_dssp GHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHH
Confidence 8887765 679999999974 2467999999999999999999999999999999999999886 6799999999
Q ss_pred HHHHhhcCCCCCC
Q 012413 448 LLGYLREPRQEGP 460 (464)
Q Consensus 448 aL~~L~~~~~~~~ 460 (464)
+|.+|..++.-++
T Consensus 443 ~L~~L~~~~~~~~ 455 (457)
T d1xm9a1 443 LLSDMWSSKELQG 455 (457)
T ss_dssp HHHTTSSSTTCSS
T ss_pred HHHHHHcCHhhHh
Confidence 9999988776543
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.2e-21 Score=194.92 Aligned_cols=276 Identities=16% Similarity=0.155 Sum_probs=221.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTLI 256 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i 256 (464)
+||.||+.|++++++++..|+.+|++++.++++++..+.+.|+||+|+++|++++++++..|+++|.+|+. +++++..+
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999996 57889999
Q ss_pred HhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHh----------------hcCChhhHH
Q 012413 257 TNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL----------------IYGSSRGKK 319 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL----------------~~~~~~v~~ 319 (464)
.+.|+++.|+.++.. .+..++..++++|.+++.....+......| ++.++..+ ...+..++.
T Consensus 83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 161 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHH-HHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence 999999999998865 688999999999999998876666555544 45555443 234678889
Q ss_pred HHHHHHHHHhcCcchHHHHHH-cCCHHHHHHhhcC---------------------------------------------
Q 012413 320 DALTTLYKLCSLKQNKERAVS-AGAVRPLVGMLAG--------------------------------------------- 353 (464)
Q Consensus 320 ~A~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~--------------------------------------------- 353 (464)
.++++|.+++.+++++..++. .|+++.|+.++.+
T Consensus 162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T d1xm9a1 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence 999999999988877766654 5566766665531
Q ss_pred ------------------------------------------------------CCHHHHHHHHHHHHHHhCCH------
Q 012413 354 ------------------------------------------------------QGEGMAEKAMVVLSLLAGIA------ 373 (464)
Q Consensus 354 ------------------------------------------------------~~~~v~~~A~~aL~nLa~~~------ 373 (464)
..+.++..+.+++.+++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 321 (457)
T d1xm9a1 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence 11223344555666665321
Q ss_pred hhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC------CHHHHHHHHH
Q 012413 374 EGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG------SVRAKHKAET 447 (464)
Q Consensus 374 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~------~~~v~~~A~~ 447 (464)
..+..+...|+++.|+++++++++.++..++++|++|+.. +..+..+.+ ++++.|+.++... +++++..|++
T Consensus 322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~-~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~ 399 (457)
T d1xm9a1 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACY 399 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC-hhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHH
Confidence 1244556689999999999999999999999999999865 455666654 6799999999753 3589999999
Q ss_pred HHHHhhcCC
Q 012413 448 LLGYLREPR 456 (464)
Q Consensus 448 aL~~L~~~~ 456 (464)
+|.++....
T Consensus 400 ~L~~l~~~~ 408 (457)
T d1xm9a1 400 TVRNLMASQ 408 (457)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhcCC
Confidence 999998654
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=9.7e-21 Score=180.24 Aligned_cols=195 Identities=16% Similarity=0.124 Sum_probs=177.5
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHH-HHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHH
Q 012413 229 KCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVY-VLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPL 306 (464)
Q Consensus 229 ~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~L 306 (464)
...+.+.+..|+.+|.+|+.+.+++..++..|++++|+. +|+++++++|..|+++|++++.+ +..+..+.+.|++|.|
T Consensus 27 ~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 27 QAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 345678899999999999998899999999999999885 78899999999999999999986 5678888999999999
Q ss_pred HHHhhc-CChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcC
Q 012413 307 VSLLIY-GSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEEN 383 (464)
Q Consensus 307 i~lL~~-~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g 383 (464)
+.+|.+ .++.++..++++|.+++. ++.++..+...|+++.|+.++.+.+..++..++++|++|+ ..+..+..+.+.|
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 186 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 186 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence 999975 578899999999999998 5577888899999999999999999999999999999998 6788999999999
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR 423 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 423 (464)
+++.|+.+++++++.++..|+++|++|+..++.....+..
T Consensus 187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 226 (264)
T d1xqra1 187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE 226 (264)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999999999988877666554
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=7.6e-20 Score=173.98 Aligned_cols=194 Identities=18% Similarity=0.149 Sum_probs=173.3
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVP-LLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSL 265 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~-lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~L 265 (464)
..+.+.+..|+.+|.+++.+ .+++..+...|++++|+. ++++++++++..|+++|++++.+ +..+..+.+.|++|.|
T Consensus 28 ~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 28 AADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 44668899999999999965 777888889999999885 78889999999999999999985 6778889999999999
Q ss_pred HHHHcc-CCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcC
Q 012413 266 VYVLKT-GTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAG 342 (464)
Q Consensus 266 v~lL~~-~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g 342 (464)
+.+|.+ .++.++..++++|.+++.+ +.++..+...|+++.|+.+|.+++..++..++++|++++. +++.+..+++.|
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 186 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 186 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence 999964 6789999999999999987 5678888899999999999999999999999999999987 678999999999
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhc
Q 012413 343 AVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEE 382 (464)
Q Consensus 343 ~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~ 382 (464)
+++.|+.+|.++++.++..|+++|.+|+. ++.....+...
T Consensus 187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~ 227 (264)
T d1xqra1 187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP 227 (264)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999999999999999999999999994 55665666543
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=2e-12 Score=120.78 Aligned_cols=250 Identities=13% Similarity=0.041 Sum_probs=178.4
Q ss_pred HHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCCchHHH
Q 012413 101 LNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTV 179 (464)
Q Consensus 101 ~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~~~v 179 (464)
+.|.++|+| ++.+|..|+..|+.+ + ...++
T Consensus 22 ~~L~~~L~d~~~~vR~~A~~~L~~~-------------~------------------------------------~~~~~ 52 (276)
T d1oyza_ 22 DELFRLLDDHNSLKRISSARVLQLR-------------G------------------------------------GQDAV 52 (276)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHH-------------C------------------------------------CHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhh-------------C------------------------------------CHhHH
Confidence 466777887 888888888887765 1 03456
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHh
Q 012413 180 KICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALV-PLLKCSDPWTQEHSVTALLNLSLHENNKTLITN 258 (464)
Q Consensus 180 ~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll-~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~ 258 (464)
+.|+..++++++.+|..|+.+|..+....... ...++.|+ .+++++++.++..|+.+|+++....... .
T Consensus 53 ~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~------~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~ 122 (276)
T d1oyza_ 53 RLAIEFCSDKNYIRRDIGAFILGQIKICKKCE------DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----S 122 (276)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----H
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccc------cchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----h
Confidence 66777888888888888888887775442211 11233333 3566788888888888888876532211 1
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHH
Q 012413 259 AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERA 338 (464)
Q Consensus 259 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~i 338 (464)
...++.+...+.+.+..++..++.++..+ .+...++.++.++.+.+..++..+..++..+......
T Consensus 123 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~~----------~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---- 188 (276)
T d1oyza_ 123 PKIVEQSQITAFDKSTNVRRATAFAISVI----------NDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---- 188 (276)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH----
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHhhc----------chHHHHHHHHHhcccccchhhhhHHHHHHhhhccccc----
Confidence 23566777777888888888888877764 3456678888888888888888888877776553322
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhH
Q 012413 339 VSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNR 418 (464)
Q Consensus 339 v~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~ 418 (464)
.++.++..+.+.+..++..++.+++.+.. ..+++.|++.+.++ .++..|+++|+.++.
T Consensus 189 ----~~~~~~~~~~~~~~~~~~~~~~al~~~~~----------~~~~~~L~~~l~d~--~vr~~a~~aL~~ig~------ 246 (276)
T d1oyza_ 189 ----IRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------KRVLSVLCDELKKN--TVYDDIIEAAGELGD------ 246 (276)
T ss_dssp ----HHHHHHHHTTCSCHHHHHHHHHHHHHTTC----------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC------
T ss_pred ----cchhhhhhhhhhhhhhhhhhccccchhhh----------hhhHHHHHHHhCCh--HHHHHHHHHHHHcCC------
Confidence 44567777788888888888888876643 45789999999764 488999999999873
Q ss_pred HHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHH
Q 012413 419 GLLVREGGIPPLVALSQTG-SVRAKHKAETLLG 450 (464)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~ 450 (464)
.++++.|..++.+. +.+|+..|..+|+
T Consensus 247 -----~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 247 -----KTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp -----GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 35789999988774 6799999988875
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1e-11 Score=129.01 Aligned_cols=332 Identities=13% Similarity=0.085 Sum_probs=214.4
Q ss_pred hhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCc-hh-----hHhhh
Q 012413 97 EDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENF-ST-----EIIES 169 (464)
Q Consensus 97 e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~-s~-----~i~~~ 169 (464)
+.-+.+|.+++.+ .+.||..++.++++++....... .. ..+.+++..|...+. .. .+...
T Consensus 86 ~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~-~~------------~~l~p~i~~L~~~~~~~~r~~a~~ll~~ 152 (588)
T d1b3ua_ 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD-LE------------AHFVPLVKRLAGGDWFTSRTSACGLFSV 152 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH-HH------------HTHHHHHHHHHTCSSHHHHHHHGGGHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHH-HH------------HHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3455667777777 78899999999999976543321 11 112223333333221 11 11111
Q ss_pred cCC----CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 012413 170 ISP----EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLN 245 (464)
Q Consensus 170 ~~~----~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~ 245 (464)
+.. ......++.+...+++.++.||..|+.++..++..-.. .......++.+..+++++++.+|..|+.++..
T Consensus 153 ~~~~~~~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~ 229 (588)
T d1b3ua_ 153 CYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVN 229 (588)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Confidence 111 11223566667778899999999999999999876332 22244677888899999999999999999999
Q ss_pred hcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHH
Q 012413 246 LSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTL 325 (464)
Q Consensus 246 La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL 325 (464)
++..-... ......+|.+..++++.+..+|..++.+|.+++..-. ..+.....++.+..++.+.+..+|..++.+|
T Consensus 230 i~~~~~~~--~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l 305 (588)
T d1b3ua_ 230 IAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305 (588)
T ss_dssp HHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred hhccCCHH--HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhccchHHHHHHHHHH
Confidence 87532211 1123368899999999999999999999999875411 1122345689999999999999999999999
Q ss_pred HHHhcC--cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHH
Q 012413 326 YKLCSL--KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFA 403 (464)
Q Consensus 326 ~nL~~~--~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 403 (464)
..++.. ........-...++.+...+.+.+..++..++.++..++..-.. . -.....++.+..+++++++.++..+
T Consensus 306 ~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~-~-~~~~~l~p~l~~~l~d~~~~v~~~~ 383 (588)
T d1b3ua_ 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-D-NTIEHLLPLFLAQLKDECPEVRLNI 383 (588)
T ss_dssp HHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-H-HHHHHTHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch-h-HHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 999873 33333334455788889999998888888888777766521110 0 1112346677777777777777777
Q ss_pred HHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 404 VLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 404 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
+.++..+...-.. .. .....++.+..++.+.++++|..+..++..+.
T Consensus 384 ~~~l~~~~~~~~~--~~-~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~ 430 (588)
T d1b3ua_ 384 ISNLDCVNEVIGI--RQ-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp HTTCHHHHHHSCH--HH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcch--hh-hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7766665532100 00 01123455555555555555555555555544
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.3e-11 Score=128.23 Aligned_cols=330 Identities=13% Similarity=0.054 Sum_probs=224.1
Q ss_pred HHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCc-hhhHhhhcC------
Q 012413 100 YLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENF-STEIIESIS------ 171 (464)
Q Consensus 100 ~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~-s~~i~~~~~------ 171 (464)
+..|...|.+ ++.+|.+++..|+.++...++..... .++|.+ .+.++..+. --.+.+.+.
T Consensus 12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~---------~lip~l---~~~~~~~~ev~~~~~~~l~~~~~~~ 79 (588)
T d1b3ua_ 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRS---------ELLPFL---TDTIYDEDEVLLALAEQLGTFTTLV 79 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHH---------THHHHH---HHTCCCCHHHHHHHHHHHTTCSGGG
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHH---------HHHHHH---HHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 3445555666 88889999999998876554433221 144444 333332210 000111111
Q ss_pred --CCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 012413 172 --PEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH 249 (464)
Q Consensus 172 --~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~ 249 (464)
+......++.+...+.++++.||..|+.+|..++..-+.. -...-.+|.+..+.+++....|..|+..+..+...
T Consensus 80 ~~~~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~---~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~ 156 (588)
T d1b3ua_ 80 GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR 156 (588)
T ss_dssp TSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTT
T ss_pred CChhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 1234456777777888899999999999999998764321 22334566666777777788888898888888764
Q ss_pred CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHh
Q 012413 250 ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLC 329 (464)
Q Consensus 250 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~ 329 (464)
..... ....++.+..++++.++.+|..++.++..++..-.. .......+|.+..++.+++..+|..|+.++..++
T Consensus 157 ~~~~~---~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~ 231 (588)
T d1b3ua_ 157 VSSAV---KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp SCHHH---HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred hhHHH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhh
Confidence 32211 122578888999999999999999999998765221 1223345788888899999999999999999987
Q ss_pred cCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012413 330 SLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 330 ~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 409 (464)
..-... ......+|.+..++.+....++..++.+|+.++..-. ..+.....++.+..++.+.+.++|..|+.++..
T Consensus 232 ~~~~~~--~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~ 307 (588)
T d1b3ua_ 232 QLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307 (588)
T ss_dssp HHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ccCCHH--HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHH
Confidence 632111 1223368889999999999999999999999884211 123335678999999999999999999999999
Q ss_pred HhhcC-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 410 LCAES-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 410 L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
++..- ........-...++.+...+.+.++.+|..++.++..+.
T Consensus 308 ~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~ 352 (588)
T d1b3ua_ 308 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp HHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhh
Confidence 88642 122222223455677777777777788877777666554
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=3e-11 Score=112.53 Aligned_cols=226 Identities=10% Similarity=0.012 Sum_probs=175.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLIT 257 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~ 257 (464)
..+.|++.|+++++.||..|+.+|..+.. ..+++.|+.+++++++.++..|+.+|+.+.........
T Consensus 20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~-- 86 (276)
T d1oyza_ 20 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-- 86 (276)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH--
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc--
Confidence 44566889999999999999999976642 25689999999999999999999999999764433222
Q ss_pred hcCcHHHH-HHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHH
Q 012413 258 NAGAIKSL-VYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKE 336 (464)
Q Consensus 258 ~~g~i~~L-v~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 336 (464)
.++.| ..+++++++.++..++.+|.++...... .....++.+...+.+.++.++..++.+++.+.
T Consensus 87 ---~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~------- 152 (276)
T d1oyza_ 87 ---VFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIN------- 152 (276)
T ss_dssp ---HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred ---hHHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc-------
Confidence 23333 3466788999999999999998654321 12235778888888899999999988877642
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
+...++.+..++...+..++..+..++..+.... ...++.++..+.+.+..++..++.+++.+..
T Consensus 153 ---~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~---- 217 (276)
T d1oyza_ 153 ---DKATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD---- 217 (276)
T ss_dssp -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC----
T ss_pred ---hHHHHHHHHHhcccccchhhhhHHHHHHhhhccc--------cccchhhhhhhhhhhhhhhhhhccccchhhh----
Confidence 3557889999999989989888888888776432 1245567788888999999999999988763
Q ss_pred hHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 417 NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 417 ~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
..+++.|++.+++ +.+|..+.++|+.+++
T Consensus 218 -------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~ 246 (276)
T d1oyza_ 218 -------KRVLSVLCDELKK--NTVYDDIIEAAGELGD 246 (276)
T ss_dssp -------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC
T ss_pred -------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC
Confidence 3468999999875 4589999999999874
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=2.7e-08 Score=97.83 Aligned_cols=280 Identities=13% Similarity=0.089 Sum_probs=181.7
Q ss_pred CCchHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcC
Q 012413 173 EDLQPTVKICIDGLQS--SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s--~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~ 248 (464)
..+...++.++..+.+ .++..+..++.++..+..........-.-...++.++..+.+ .+.+++..|+.++..+..
T Consensus 123 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~ 202 (458)
T d1ibrb_ 123 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 202 (458)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHH
Confidence 3556788888888765 557788888999888775433221111123456777888875 467899999999999986
Q ss_pred CCchH--HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHH
Q 012413 249 HENNK--TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTL 325 (464)
Q Consensus 249 ~~~~~--~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL 325 (464)
..... .........+.+..++.+++++++..++.+|..+... ++.-.........+.+...+.+.+..++..++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l 282 (458)
T d1ibrb_ 203 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 282 (458)
T ss_dssp TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 43211 1222233567788888899999999999999998754 22111112222334455666778889999999998
Q ss_pred HHHhcCcchH---------------------HHHHHcCCHHHHHHhhcC-------CCHHHHHHHHHHHHHHhCCHhhHH
Q 012413 326 YKLCSLKQNK---------------------ERAVSAGAVRPLVGMLAG-------QGEGMAEKAMVVLSLLAGIAEGRE 377 (464)
Q Consensus 326 ~nL~~~~~~~---------------------~~iv~~g~v~~Lv~lL~~-------~~~~v~~~A~~aL~nLa~~~~~~~ 377 (464)
..++...... ........++.+...+.+ .+..++..+..++..++.....
T Consensus 283 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-- 360 (458)
T d1ibrb_ 283 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-- 360 (458)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--
Confidence 8886422100 011112244555555532 1234677788888877732110
Q ss_pred HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 378 AIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 378 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.+. ...++.+.+.+.+++..+|..|+.+|+.++.........-.-...++.|+..++++++.||..|+|+|+.+++.
T Consensus 361 ~~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 361 DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hhh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 111 12456677777888999999999999999854211100001135789999999999999999999999998864
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=8e-09 Score=112.48 Aligned_cols=276 Identities=13% Similarity=0.062 Sum_probs=173.4
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC--Cch
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH--ENN 252 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~--~~~ 252 (464)
+...++.+...+.++++..|+.|+.+|+.++.+..+...... ...++.|+..++++++.+|..|+++|+.++.. +..
T Consensus 393 l~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~ 471 (888)
T d1qbkb_ 393 LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP 471 (888)
T ss_dssp HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSC
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 345667777888999999999999999999876433221111 24678888999999999999999999998752 222
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc--cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 253 KTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE--ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
... .-...++.++..+.++++.++..|+++|.++.... .....+ ...++.|+..+...+...+..+..++..++.
T Consensus 472 ~~~-~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~ 548 (888)
T d1qbkb_ 472 PDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLAD 548 (888)
T ss_dssp HHH-HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhh-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 222 23468899999999999999999999999987542 111111 2235566666666666666666666655543
Q ss_pred C---cchHHHHHHcCCHHHHHHhh------------------------c-------------------------------
Q 012413 331 L---KQNKERAVSAGAVRPLVGML------------------------A------------------------------- 352 (464)
Q Consensus 331 ~---~~~~~~iv~~g~v~~Lv~lL------------------------~------------------------------- 352 (464)
. .-....+.+ ..++.++... .
T Consensus 549 ~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 627 (888)
T d1qbkb_ 549 SVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQ 627 (888)
T ss_dssp HHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 000111110 0111111111 0
Q ss_pred -----CCCHHHHHHHHHHHHHHhC--CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcC
Q 012413 353 -----GQGEGMAEKAMVVLSLLAG--IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREG 425 (464)
Q Consensus 353 -----~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g 425 (464)
..+.+....++.++..++. .......+.....++.+..++++.++.++..|..+++.|+......-.... ..
T Consensus 628 ~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~ 706 (888)
T d1qbkb_ 628 PDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-AD 706 (888)
T ss_dssp TTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HH
Confidence 0112223333334444431 111122233345677788888899999999999999999875433211111 12
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 426 GIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 426 ~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
.++.|..-+.++...++..|+|+++.|+..-
T Consensus 707 ~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~ 737 (888)
T d1qbkb_ 707 FMPILGTNLNPEFISVCNNATWAIGEISIQM 737 (888)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence 5667777777788899999999999987643
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.2e-08 Score=111.10 Aligned_cols=274 Identities=15% Similarity=0.073 Sum_probs=170.0
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCc-hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC--Cc
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRS-DNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH--EN 251 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~-~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~--~~ 251 (464)
+...++.++..++++++.||..++++|+.++..-. ...... -...++.++..+.+.++.++..|+++|.++... +.
T Consensus 434 l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~ 512 (888)
T d1qbkb_ 434 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 512 (888)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred chhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 45688889999999999999999999998875311 111111 246788899999999999999999999998752 11
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc---ccchhhhh------------------------------
Q 012413 252 NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI---EENKSSIG------------------------------ 298 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~---~~~~~~i~------------------------------ 298 (464)
....+ ...++.|+..+.......+..+..++..++.. .-.+..+.
T Consensus 513 l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~ 590 (888)
T d1qbkb_ 513 LVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSS 590 (888)
T ss_dssp SGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHH
T ss_pred hhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 11111 22456677777776666665555555554321 00000000
Q ss_pred -----ccCChH-------HHHHHhh-----------------cCChhhHHHHHHHHHHHhc-CcchHHHHH-HcCCHHHH
Q 012413 299 -----ACGAIP-------PLVSLLI-----------------YGSSRGKKDALTTLYKLCS-LKQNKERAV-SAGAVRPL 347 (464)
Q Consensus 299 -----~~g~i~-------~Li~lL~-----------------~~~~~v~~~A~~aL~nL~~-~~~~~~~iv-~~g~v~~L 347 (464)
..+..| .++.++. ..+..+...++.++..+.. .......++ ....++.+
T Consensus 591 i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l 670 (888)
T d1qbkb_ 591 VATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLM 670 (888)
T ss_dssp HHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHH
T ss_pred HHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHH
Confidence 000001 1111110 0122333444445555543 122222233 34466778
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhC-CHhh-HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHh-HHHHHHc
Q 012413 348 VGMLAGQGEGMAEKAMVVLSLLAG-IAEG-REAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKN-RGLLVRE 424 (464)
Q Consensus 348 v~lL~~~~~~v~~~A~~aL~nLa~-~~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~-~~~i~~~ 424 (464)
...+.+....++..|..+++.|+. .... ...+ ...++.|++.+.++...++.+|+++++.|+...... +..+ .
T Consensus 671 ~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l--~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~--~ 746 (888)
T d1qbkb_ 671 YQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI--P 746 (888)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS--H
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH--H
Confidence 888889999999999999998873 2221 1111 125667777777788899999999999998653221 1111 2
Q ss_pred CChHHHHHhhhcC--CHHHHHHHHHHHHHhhcC
Q 012413 425 GGIPPLVALSQTG--SVRAKHKAETLLGYLREP 455 (464)
Q Consensus 425 g~i~~Lv~lL~s~--~~~v~~~A~~aL~~L~~~ 455 (464)
.+++.|+.+++++ +..++++++.+|+.|+..
T Consensus 747 ~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~ 779 (888)
T d1qbkb_ 747 MVLHQLVEIINRPNTPKTLLENTAITIGRLGYV 779 (888)
T ss_dssp HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence 4688899999875 357999999999988753
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.89 E-value=3.3e-08 Score=98.43 Aligned_cols=278 Identities=12% Similarity=0.073 Sum_probs=198.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE-SGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~-~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
+.-..+...+..++..+...+...+..++..........-. ......+-.+....+.+.+..|+.+|..+...++.|..
T Consensus 122 ~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~ 201 (477)
T d1ho8a_ 122 QLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDV 201 (477)
T ss_dssp HHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred chhHHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHH
Confidence 44455567788888888888888888888765444332211 12233333444668889999999999999999999998
Q ss_pred HHh--cCcHHHHHHHHcc-----------------CCHHHHHHHHHHHHHhcccccchhhhhcc--CChHHHHHHhhcC-
Q 012413 256 ITN--AGAIKSLVYVLKT-----------------GTETSKQNAACALMSLALIEENKSSIGAC--GAIPPLVSLLIYG- 313 (464)
Q Consensus 256 i~~--~g~i~~Lv~lL~~-----------------~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~--g~i~~Li~lL~~~- 313 (464)
+.. ...++.|+..|+. ....++.+++.+++-|+..++....+... +.|+.|+++++..
T Consensus 202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~ 281 (477)
T d1ho8a_ 202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITI 281 (477)
T ss_dssp HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCC
T ss_pred HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 864 4567888887754 12478999999999999988777777664 4589999999764
Q ss_pred ChhhHHHHHHHHHHHhcCcc------hHHHHHHcCCHHHHHHhhcC--CCHHHHHHHHHHHHH--------HhC------
Q 012413 314 SSRGKKDALTTLYKLCSLKQ------NKERAVSAGAVRPLVGMLAG--QGEGMAEKAMVVLSL--------LAG------ 371 (464)
Q Consensus 314 ~~~v~~~A~~aL~nL~~~~~------~~~~iv~~g~v~~Lv~lL~~--~~~~v~~~A~~aL~n--------La~------ 371 (464)
-..+.+-++.+|.|++..+. ....++..++++.+-.+... .++++.+. +..|.. ++.
T Consensus 282 KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~ed-l~~L~~~L~~~~k~lTsfd~Y~~ 360 (477)
T d1ho8a_ 282 KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQD-ISNLKEILENEYQELTSFDEYVA 360 (477)
T ss_dssp SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHH-HHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHH-HHHHHHHHHHHHHhcCcHHHHHH
Confidence 77899999999999987432 23345566666554444332 24544332 222211 111
Q ss_pred ---------CHhhH-HHHH--------hc--CcHHHHHHHHh----------cCCHHHHHHHHHHHHHHhhcCHHhHHHH
Q 012413 372 ---------IAEGR-EAIV--------EE--NGIAALVEAIE----------DGSVKGKEFAVLTLLQLCAESVKNRGLL 421 (464)
Q Consensus 372 ---------~~~~~-~~i~--------~~--g~i~~Lv~lL~----------~~~~~v~~~A~~aL~~L~~~~~~~~~~i 421 (464)
+|.++ +.+- +. ..+..|+++|+ +.++.+..-|+.=||.++.+-|..+..+
T Consensus 361 Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il 440 (477)
T d1ho8a_ 361 ELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVL 440 (477)
T ss_dssp HHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHH
Confidence 22332 1222 11 26899999996 3467788899999999999999999999
Q ss_pred HHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 422 VREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 422 ~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.+.|+=..+++++.+++++||..|..++..+..+
T Consensus 441 ~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 474 (477)
T d1ho8a_ 441 DKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 474 (477)
T ss_dssp HHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999887654
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.73 E-value=5.8e-10 Score=90.38 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=91.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHH
Q 012413 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSL 265 (464)
Q Consensus 186 L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~L 265 (464)
|+++++.||..|+++|+.+. ..+++.|+.+|+++++.+|..|+++|+++. ..++++.|
T Consensus 1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L 58 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPL 58 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHH
Confidence 45677788888888775432 246889999999999999999999998764 23478999
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHH
Q 012413 266 VYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLY 326 (464)
Q Consensus 266 v~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~ 326 (464)
+.+|+++++.+|..|+++|..+ ...++++.|..++.++++.+|+.|+.+|.
T Consensus 59 ~~~l~d~~~~VR~~a~~aL~~i----------~~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 59 IKLLEDDSGFVRSGAARSLEQI----------GGERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHCCTHHHHHHHHHHHHH----------CSHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HhhhccchhHHHHHHHHHHHHh----------CccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999999999999987 33456899999999999999999998874
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=1.3e-06 Score=92.37 Aligned_cols=274 Identities=12% Similarity=0.075 Sum_probs=166.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCchH-HHH
Q 012413 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS-DPWTQEHSVTALLNLSLHENNK-TLI 256 (464)
Q Consensus 179 v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~-~~~v~~~A~~aL~~La~~~~~~-~~i 256 (464)
-..++..+.++++.+|..++.++..++...-... .....++.|+..+.++ ...++..|+.+|..++..-+.. ..+
T Consensus 97 k~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~---~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~ 173 (861)
T d2bpta1 97 KTNALTALVSIEPRIANAAAQLIAAIADIELPHG---AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL 173 (861)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT---CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC---chHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3556778889999999999999998876511100 0123566777777764 4678888999999887532111 111
Q ss_pred Hh--cCcHHHHHHHHc--cCCHHHHHHHHHHHHHhcccc-cc-hhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 257 TN--AGAIKSLVYVLK--TGTETSKQNAACALMSLALIE-EN-KSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 257 ~~--~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~Ls~~~-~~-~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
.. ...++.++..+. ..+..++..+..++.++...- .. .........++.+...+.++++.++..++.+|..++.
T Consensus 174 ~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~ 253 (861)
T d2bpta1 174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253 (861)
T ss_dssp GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11 112333444443 356899999999999876542 11 1111123346677788889999999999999999987
Q ss_pred -CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhh----------------------------------
Q 012413 331 -LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEG---------------------------------- 375 (464)
Q Consensus 331 -~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~---------------------------------- 375 (464)
.++.....+..-....+.....+.++.++..++..+..++.....
T Consensus 254 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l 333 (861)
T d2bpta1 254 KYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL 333 (861)
T ss_dssp HHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222222223344455666677777776666555421100
Q ss_pred --------------HH----------HHHhcCcHHHHHH----HHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCCh
Q 012413 376 --------------RE----------AIVEENGIAALVE----AIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGI 427 (464)
Q Consensus 376 --------------~~----------~i~~~g~i~~Lv~----lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i 427 (464)
+. .......++.+.. .+.+.+...+..|..+++.+..........-.-...+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l 413 (861)
T d2bpta1 334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413 (861)
T ss_dssp TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 00 0000112333332 3335667788888888888876432221111113468
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 428 PPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 428 ~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+.++..+.++++.+|..+.++++.+.+.
T Consensus 414 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T d2bpta1 414 PSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHH
Confidence 8899999999999999999999988763
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.62 E-value=2.9e-09 Score=86.07 Aligned_cols=109 Identities=21% Similarity=0.221 Sum_probs=92.5
Q ss_pred hhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHH
Q 012413 310 LIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALV 389 (464)
Q Consensus 310 L~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv 389 (464)
|.++++.+|..|+.+|+.+. ..+++.|+..|.+++..++..|+++|+++.. .+.++.|+
T Consensus 1 L~D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~ 59 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLI 59 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHH
Confidence 45778888988888877642 2367889999999999999999999987764 34689999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 012413 390 EAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLG 450 (464)
Q Consensus 390 ~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 450 (464)
.+++++++.+|..|+++|+.+.. .+.++.|..++.++++.||..|..+|.
T Consensus 60 ~~l~d~~~~VR~~a~~aL~~i~~-----------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 60 KLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred hhhccchhHHHHHHHHHHHHhCc-----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999863 235788999999999999999999875
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=4.1e-07 Score=101.28 Aligned_cols=351 Identities=11% Similarity=0.048 Sum_probs=213.2
Q ss_pred cccccCCcchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCch-hh
Q 012413 88 AKSVKSTISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFS-TE 165 (464)
Q Consensus 88 ~~~~~~~~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s-~~ 165 (464)
+........+..++-|.++|+| ++.||..|+..|+.++....... ..+..+.++..+...+.. .+
T Consensus 35 ~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~-------------~~~l~~~L~~~l~~~~~~~r~ 101 (1207)
T d1u6gc_ 35 SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ-------------VETIVDTLCTNMLSDKEQLRD 101 (1207)
T ss_dssp CCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH-------------HHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh-------------HHHHHHHHHHHhcCCchhhhH
Confidence 3344455566778899999999 99999999999999976543211 111222223333222210 00
Q ss_pred --------HhhhcCC-----CCch----HHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHh
Q 012413 166 --------IIESISP-----EDLQ----PTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPL 227 (464)
Q Consensus 166 --------i~~~~~~-----~~~~----~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~l 227 (464)
+...+.. .... ..++.+...+. ..++.++..|+.+|..+....+..-... ....++.|+..
T Consensus 102 ~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~-~~~il~~l~~~ 180 (1207)
T d1u6gc_ 102 ISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQ 180 (1207)
T ss_dssp HHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGG
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH-HHHHHHHHHHH
Confidence 1111111 1112 23333444443 4678899999999988876533221111 12467778888
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHH
Q 012413 228 LKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPL 306 (464)
Q Consensus 228 L~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L 306 (464)
|.++++.+|..|+.+|+.++..-... .-...++.++..|.. .+...+..++.++..++.....+-.-.-...++.+
T Consensus 181 l~~~~~~vR~~A~~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l 257 (1207)
T d1u6gc_ 181 LTSPRLAVRKRTIIALGHLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLV 257 (1207)
T ss_dssp GGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHH
Confidence 99999999999999999998742210 112356777766644 44556666777787776542221111124568999
Q ss_pred HHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHh-----------------------------------
Q 012413 307 VSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGM----------------------------------- 350 (464)
Q Consensus 307 i~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~l----------------------------------- 350 (464)
++.+.+.+..++..++.++..+... +........ ..++.++..
T Consensus 258 ~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1207)
T d1u6gc_ 258 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEY 336 (1207)
T ss_dssp HHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-------------------------------
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHH-HHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHH
Confidence 9999999999999999999998763 221110000 011111111
Q ss_pred --hcCCCHHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHh----------
Q 012413 351 --LAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKN---------- 417 (464)
Q Consensus 351 --L~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~---------- 417 (464)
..+....++..++.+|..+... ++....+ -...++.|+..+.+.++.++..+..++..+.......
T Consensus 337 ~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~-~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~ 415 (1207)
T d1u6gc_ 337 SDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAM 415 (1207)
T ss_dssp -----CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC----------
T ss_pred hhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHH
Confidence 1122235688899999998853 3333332 3457899999999999999999999998886421000
Q ss_pred ------HHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 418 ------RGLLVR--EGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 418 ------~~~i~~--~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
...+.+ ...++.+...+.+.++.++..+..++..+....+
T Consensus 416 ~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~ 463 (1207)
T d1u6gc_ 416 EQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 463 (1207)
T ss_dssp --CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred HhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcc
Confidence 011111 2356667777888899999999999998876544
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=4.3e-08 Score=109.37 Aligned_cols=270 Identities=13% Similarity=0.057 Sum_probs=180.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLIT 257 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~ 257 (464)
.|..|++.+.++|+++|..|+.-|...-.........-....+++.|+.+|++.+++||..|+.+|+.++..-.... +
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~--~ 81 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--V 81 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH--H
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh--H
Confidence 45677888999999999999988876543322111111123478899999999999999999999999987532211 1
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-c-cchhhhhc----cCChHHHHHHhhc-CChhhHHHHHHHHHHHhc
Q 012413 258 NAGAIKSLVYVLKTGTETSKQNAACALMSLALI-E-ENKSSIGA----CGAIPPLVSLLIY-GSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 258 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~-~~~~~i~~----~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~ 330 (464)
...++.|+..+.+++...+..+..+|..+... + .....-.. ...++.+...+.. .+..++..++.+|..+..
T Consensus 82 -~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~ 160 (1207)
T d1u6gc_ 82 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 160 (1207)
T ss_dssp -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence 23677788888888888888888888776432 1 11000011 1123333443333 367789999999998866
Q ss_pred -CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHH
Q 012413 331 -LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIE-DGSVKGKEFAVLTLL 408 (464)
Q Consensus 331 -~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~ 408 (464)
.+....... ...++.|+..+.++...++..|+.+|+.++..-.. . .-...+..+++.+. +.+...+..++.+++
T Consensus 161 ~~g~~l~~~~-~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~ 236 (1207)
T d1u6gc_ 161 RQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--I-VFVDLIEHLLSELSKNDSMSTTRTYIQCIA 236 (1207)
T ss_dssp HTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HhhHhhHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--H-HHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 222111111 22567788888999999999999999999853211 0 11345777777665 455667777888898
Q ss_pred HHhhcCHHhHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 409 QLCAESVKNRGLLVR--EGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 409 ~L~~~~~~~~~~i~~--~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
.++...+.. +.. ..+++.++..+.+.++++|+.+..++..+...-+
T Consensus 237 ~l~~~~~~~---~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~ 284 (1207)
T d1u6gc_ 237 AISRQAGHR---IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 284 (1207)
T ss_dssp HHHHHSSGG---GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHcchh---hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhCh
Confidence 888643221 111 3578899999999999999999999999876544
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=5.1e-06 Score=88.09 Aligned_cols=279 Identities=13% Similarity=0.090 Sum_probs=175.2
Q ss_pred CchHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCC
Q 012413 174 DLQPTVKICIDGLQSS--SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLH 249 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~--~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~ 249 (464)
.|+..++.|+..+.++ +..++..++.+|..++.+-....-.-.-...++.++..+.+ .+.+++..|..++.+....
T Consensus 125 ~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~ 204 (876)
T d1qgra_ 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHH
Confidence 5677888888888654 47788899999998876432211111113467778887765 4578999999999887653
Q ss_pred CchH--HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHH
Q 012413 250 ENNK--TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLY 326 (464)
Q Consensus 250 ~~~~--~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~ 326 (464)
.... ......-.++.+...+++++++++..++.+|..+... ++.-........++.+...+.+.+..++..++..+.
T Consensus 205 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 284 (876)
T d1qgra_ 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 2111 0111122466777788889999999999999998764 222222222334555666777788888888888877
Q ss_pred HHhcCcch-H--------------------HHHHHcCCHHHHHHhhcCC-------CHHHHHHHHHHHHHHhCCHhhHHH
Q 012413 327 KLCSLKQN-K--------------------ERAVSAGAVRPLVGMLAGQ-------GEGMAEKAMVVLSLLAGIAEGREA 378 (464)
Q Consensus 327 nL~~~~~~-~--------------------~~iv~~g~v~~Lv~lL~~~-------~~~v~~~A~~aL~nLa~~~~~~~~ 378 (464)
.++..... . ........++.+...+... ...++..|..++..++..... .
T Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~ 362 (876)
T d1qgra_ 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--G
T ss_pred HHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh--h
Confidence 77652110 0 0011122344444444321 123566777777766632110 0
Q ss_pred HHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 379 IVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 379 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
++ ...++.+.+.+.+.+...+..++.+++.+..........-.-...++.+...+.++++.|+..|.|+++.+.+.
T Consensus 363 ~~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hh-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHH
Confidence 00 11234455555678899999999999998754322221212234688999999999999999999999998864
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=3e-06 Score=82.68 Aligned_cols=252 Identities=13% Similarity=0.091 Sum_probs=163.1
Q ss_pred hHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhccCchhHH-HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-Cc
Q 012413 176 QPTVKICIDGLQS--SSVAIKRSAAAKLRLLAKNRSDNRV-LIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-EN 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s--~~~~vr~~A~~~L~~La~~~~~~r~-~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~ 251 (464)
...++.++..+.+ .+..++..|+.++..+......... ........+.+..++.+++++++..++.+|..++.. ++
T Consensus 170 ~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 249 (458)
T d1ibrb_ 170 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 249 (458)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 4567778888865 4678999999999888765332211 111234566777888899999999999999998753 22
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc-----------------hhhh----hccCChHHHHHHh
Q 012413 252 NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN-----------------KSSI----GACGAIPPLVSLL 310 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~-----------------~~~i----~~~g~i~~Li~lL 310 (464)
.-.........+.+...+.+.+++++..++..+..++..... .... .....++.+...+
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 329 (458)
T d1ibrb_ 250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 329 (458)
T ss_dssp GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhh
Confidence 211112223445566777888999999999998887643100 0000 0011233344444
Q ss_pred hc-------CChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH--hhHHHHH
Q 012413 311 IY-------GSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA--EGREAIV 380 (464)
Q Consensus 311 ~~-------~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~--~~~~~i~ 380 (464)
.+ .+..++..+..++..++.. ++. +.. ..++.+...+.+++..++..|+.+|+.++... ..... .
T Consensus 330 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~-~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~ 404 (458)
T d1ibrb_ 330 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-L 404 (458)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-T
T ss_pred hcchhhhccccccHHHHHHHHHHHHHHhccHh---hhh-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-H
Confidence 32 2345888899999988772 221 121 25577778888889999999999999998532 21111 1
Q ss_pred hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhh
Q 012413 381 EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQ 435 (464)
Q Consensus 381 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 435 (464)
-...++.++.+++++++.+|..|+++|+.++..-+.. ....-.+++|+..|-
T Consensus 405 l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~---~~~~~~l~~ll~~ll 456 (458)
T d1ibrb_ 405 VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA---AINDVYLAPLLQCLI 456 (458)
T ss_dssp TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG---CCSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc---cchhhHHHHHHHHHh
Confidence 2457899999999999999999999999998532110 011234666666553
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=5.8e-06 Score=87.18 Aligned_cols=266 Identities=11% Similarity=0.026 Sum_probs=168.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCchH--
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLHENNK-- 253 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~~~~-- 253 (464)
.+..|...+.++|+.+|..|-..|..+..+++ .+.+..|+..+.+ .++.+|..|+..|.|........
T Consensus 6 ~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~ 77 (861)
T d2bpta1 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKT 77 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhh
Confidence 34444456789999999999999987765421 2567778888865 46789999999998876532211
Q ss_pred HH----HH-------hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC-ChhhHHHH
Q 012413 254 TL----IT-------NAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG-SSRGKKDA 321 (464)
Q Consensus 254 ~~----i~-------~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A 321 (464)
.. .. ....-..++..|.++++.+|..++.++..++..+-... .....++.|++.+.+. +..++..+
T Consensus 78 ~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~--~wpeli~~L~~~~~s~~~~~~~~~a 155 (861)
T d2bpta1 78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG--AWPELMKIMVDNTGAEQPENVKRAS 155 (861)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT--CCHHHHHHHHHHTSTTSCHHHHHHH
T ss_pred hhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC--chHHHHHHHHHHhcCCCcHHHHHHH
Confidence 10 00 01123567778889999999999999999875421100 0123456667777665 45678889
Q ss_pred HHHHHHHhcCcch-HHHHHH--cCCHHHHHHhhc--CCCHHHHHHHHHHHHHHhCC-HhhHH-HHHhcCcHHHHHHHHhc
Q 012413 322 LTTLYKLCSLKQN-KERAVS--AGAVRPLVGMLA--GQGEGMAEKAMVVLSLLAGI-AEGRE-AIVEENGIAALVEAIED 394 (464)
Q Consensus 322 ~~aL~nL~~~~~~-~~~iv~--~g~v~~Lv~lL~--~~~~~v~~~A~~aL~nLa~~-~~~~~-~i~~~g~i~~Lv~lL~~ 394 (464)
+.+|..++..-.. ...+.. ...+..++..+. +.+..++..++.++.++... ...-. .......++.+.+.+.+
T Consensus 156 l~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (861)
T d2bpta1 156 LLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA 235 (861)
T ss_dssp HHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcC
Confidence 9999999863221 111111 113333444443 34578899999999998743 22211 11223467788889999
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHH-HHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 395 GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPP-LVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 395 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~-Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
+++.++..+..++..++...+..-...... .+.. +....++.++.++..+...+..+++
T Consensus 236 ~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~ 295 (861)
T d2bpta1 236 EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATMKSPNDKVASMTVEFWSTICE 295 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 999999999999999986432211111111 2333 3444556788999988888776653
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=98.13 E-value=4.1e-07 Score=83.21 Aligned_cols=176 Identities=13% Similarity=0.032 Sum_probs=99.3
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHH
Q 012413 184 DGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIK 263 (464)
Q Consensus 184 ~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~ 263 (464)
..|.++..++|..|++ .-.+..|+.++++++++||..|+..|. .+
T Consensus 49 ~~l~~p~~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~Lp-----------------~~ 93 (233)
T d1lrva_ 49 QYLADPFWERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRLP-----------------RE 93 (233)
T ss_dssp GGTTCSSHHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTSC-----------------SG
T ss_pred HHhcCCcHHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHcC-----------------HH
Confidence 3567888888865552 234677888999999999999886541 24
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHH-----HHHhcCc--chHH
Q 012413 264 SLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTL-----YKLCSLK--QNKE 336 (464)
Q Consensus 264 ~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL-----~nL~~~~--~~~~ 336 (464)
.|..++.+++..|+..++..| ..+.|..++.+++..||..++..+ ..|..++ +.+.
T Consensus 94 ~L~~L~~D~d~~VR~~aa~~l-----------------~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~ 156 (233)
T d1lrva_ 94 QLSALMFDEDREVRITVADRL-----------------PLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRK 156 (233)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS-----------------CTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHH
T ss_pred HHHHHhcCCChhHHHHHHhcc-----------------CHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHH
Confidence 456666677777776665432 123444555555555555554321 0011100 0111
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
.+...-+.+.|..++.+.++.++..++..|. .+.|..++++.+..|+..++.
T Consensus 157 ~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~-----------------~~~L~~l~~D~d~~VR~aaae----------- 208 (233)
T d1lrva_ 157 LVAKRLPEESLGLMTQDPEPEVRRIVASRLR-----------------GDDLLELLHDPDWTVRLAAVE----------- 208 (233)
T ss_dssp HHHHHSCGGGGGGSTTCSSHHHHHHHHHHCC-----------------GGGGGGGGGCSSHHHHHHHHH-----------
T ss_pred HHHHhcCHHHHHHHccCCCHHHHHHHHHhcC-----------------cHHHHHHHhCCCHHHHHHHHH-----------
Confidence 1111112344555555555555555544321 245556666667777666542
Q ss_pred hHHHHHHcCChHHHHHhhhcCCHHHHHHHHH
Q 012413 417 NRGLLVREGGIPPLVALSQTGSVRAKHKAET 447 (464)
Q Consensus 417 ~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~ 447 (464)
. ..+.++..|.++++.||+.|+.
T Consensus 209 -------~-~~~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 209 -------H-ASLEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp -------H-SCHHHHHHCCCCCHHHHHHHHC
T ss_pred -------h-ccHHHHHHhCCCCHHHHHHHHH
Confidence 1 2355677788889999998864
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.95 E-value=0.00014 Score=71.75 Aligned_cols=225 Identities=16% Similarity=0.103 Sum_probs=160.1
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhHHHHHh--cCChHHHHHhhcC-----------------CCHHHHHHHHHHHHHhc
Q 012413 187 QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE--SGAVPALVPLLKC-----------------SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 187 ~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~--~g~i~~Ll~lL~~-----------------~~~~v~~~A~~aL~~La 247 (464)
...+.+.+.-|+++|..+... +..|..+.. ...+++|+..|+. ....++..++.++.-|+
T Consensus 175 ~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLS 253 (477)
T d1ho8a_ 175 NIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLT 253 (477)
T ss_dssp CTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHH
Confidence 567888888899999988888 777877753 4557777777654 12578999999999999
Q ss_pred CCCchHHHHHhc--CcHHHHHHHHcc-CCHHHHHHHHHHHHHhccccc--c----hhhhhccCChHHHHHHhhcC---Ch
Q 012413 248 LHENNKTLITNA--GAIKSLVYVLKT-GTETSKQNAACALMSLALIEE--N----KSSIGACGAIPPLVSLLIYG---SS 315 (464)
Q Consensus 248 ~~~~~~~~i~~~--g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~--~----~~~i~~~g~i~~Li~lL~~~---~~ 315 (464)
.+++....+.+. +.|+.|+.+++. .-+.+.+.++.+|.|+..... + ...++..+++ +++..|... |+
T Consensus 254 F~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~r~~~De 332 (477)
T d1ho8a_ 254 FNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDE 332 (477)
T ss_dssp TSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSH
T ss_pred cCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhcCCCCCH
Confidence 998888887775 459999999965 468899999999999986521 1 2334445544 555555542 55
Q ss_pred hhHHHHHHH-------HHHHhc---------------CcchH-HHHHH----------cCCHHHHHHhhcC---------
Q 012413 316 RGKKDALTT-------LYKLCS---------------LKQNK-ERAVS----------AGAVRPLVGMLAG--------- 353 (464)
Q Consensus 316 ~v~~~A~~a-------L~nL~~---------------~~~~~-~~iv~----------~g~v~~Lv~lL~~--------- 353 (464)
++....-.. +..++. +|..+ +.|.. ...+..|+.+|..
T Consensus 333 dl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~ 412 (477)
T d1ho8a_ 333 ELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNA 412 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhccccccccc
Confidence 544332211 111221 22222 33432 1357889999962
Q ss_pred -CCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 354 -QGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 354 -~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
.++.+..-||.=|+.++ ..|.++..+.+-|+=..++++|.+++++||.+|+.|+..|..+
T Consensus 413 s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 474 (477)
T d1ho8a_ 413 KQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 474 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 34556667788889999 5788888888899999999999999999999999999888654
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=0.00034 Score=73.54 Aligned_cols=273 Identities=13% Similarity=0.074 Sum_probs=171.3
Q ss_pred hHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhccCchhHH-HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-Cc
Q 012413 176 QPTVKICIDGLQS--SSVAIKRSAAAKLRLLAKNRSDNRV-LIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-EN 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s--~~~~vr~~A~~~L~~La~~~~~~r~-~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~ 251 (464)
...++.++..+.+ ++..++..|+.++......-...-. .....-.++.+...+++++++++..++.+|..+... ++
T Consensus 171 ~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~ 250 (876)
T d1qgra_ 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 3466777777764 4578999999999877654322111 011122456677788889999999999999999763 33
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc-c----hhh------------hhc----cCChHHHHHHh
Q 012413 252 NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE-N----KSS------------IGA----CGAIPPLVSLL 310 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~-~----~~~------------i~~----~g~i~~Li~lL 310 (464)
.-.........+.+...+.+.+++++..++..+..++.... . ... ... ...++.+...+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 330 (876)
T d1qgra_ 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33333444566677778888899999888888777764210 0 000 000 11223333333
Q ss_pred hc-------CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH-hhHHHHHhc
Q 012413 311 IY-------GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA-EGREAIVEE 382 (464)
Q Consensus 311 ~~-------~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~ 382 (464)
.. .+..++..|..++..++..... .++. ..++.+...+.+.+...++.++.+++.+.... .....-.-.
T Consensus 331 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~ 407 (876)
T d1qgra_ 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI 407 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred HhcccccccccchHHHHHHHHHHHHHHHhhh--hhhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 32 1334778888888877663211 1111 13455566667777888888999999887432 222222224
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhh---cCCHHHHHHHHHHHHHhhc
Q 012413 383 NGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQ---TGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 383 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~---s~~~~v~~~A~~aL~~L~~ 454 (464)
..++.++..+.++++.++..|+++++.++...+. .......++.++..+. ++++.++..+++++..+.+
T Consensus 408 ~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~ 479 (876)
T d1qgra_ 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE---AAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG---GTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcch---hhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999864321 1111223344444332 3478999999999998875
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=97.68 E-value=3.7e-06 Score=76.66 Aligned_cols=156 Identities=9% Similarity=0.005 Sum_probs=92.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhc
Q 012413 180 KICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNA 259 (464)
Q Consensus 180 ~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~ 259 (464)
..|+.+++++++.||..|+..| ..+.|..++.+++.+|+..++..|
T Consensus 69 ~~L~~Ll~D~d~~VR~~AA~~L------------------p~~~L~~L~~D~d~~VR~~aa~~l---------------- 114 (233)
T d1lrva_ 69 EALTPLIRDSDEVVRRAVAYRL------------------PREQLSALMFDEDREVRITVADRL---------------- 114 (233)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTS------------------CSGGGGGTTTCSCHHHHHHHHHHS----------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHc------------------CHHHHHHHhcCCChhHHHHHHhcc----------------
Confidence 3445677888888888887543 124566677777777777766543
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHH-----HHhccc--ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 260 GAIKSLVYVLKTGTETSKQNAACAL-----MSLALI--EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 260 g~i~~Lv~lL~~~~~~v~~~a~~aL-----~~Ls~~--~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
..+.|..++++++..+|..++..+ ..+..+ .+.+..+...-+.+.|..++.+.++.|+..++..|
T Consensus 115 -~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L------- 186 (233)
T d1lrva_ 115 -PLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL------- 186 (233)
T ss_dssp -CTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC-------
T ss_pred -CHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc-------
Confidence 123344445555555555544321 111111 01122222222345666777777777777766543
Q ss_pred chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHH
Q 012413 333 QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVL 405 (464)
Q Consensus 333 ~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 405 (464)
+.+.|..++.+++..|+..++.. ..+.++..|.++++.|+..|+.
T Consensus 187 ----------~~~~L~~l~~D~d~~VR~aaae~------------------~~~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 187 ----------RGDDLLELLHDPDWTVRLAAVEH------------------ASLEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp ----------CGGGGGGGGGCSSHHHHHHHHHH------------------SCHHHHHHCCCCCHHHHHHHHC
T ss_pred ----------CcHHHHHHHhCCCHHHHHHHHHh------------------ccHHHHHHhCCCCHHHHHHHHH
Confidence 23667788888888888776532 1245677788889999988764
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.011 Score=54.65 Aligned_cols=196 Identities=13% Similarity=0.061 Sum_probs=153.6
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhH----HHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNR----VLIGE-SGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE 250 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r----~~i~~-~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~ 250 (464)
.+++..|+..|..-+.+.|+.++.+..++-+.....+ +.+.. ...+..|+.-. +++++-..+...|....+++
T Consensus 68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREcik~e 145 (330)
T d1upka_ 68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHE 145 (330)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSH
T ss_pred hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHHhhH
Confidence 3578888999999999999999999999887755444 23332 22333333333 56777788888899999999
Q ss_pred chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhc-ccccchhhhhcc---CChHHHHHHhhcCChhhHHHHHHHHH
Q 012413 251 NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLA-LIEENKSSIGAC---GAIPPLVSLLIYGSSRGKKDALTTLY 326 (464)
Q Consensus 251 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls-~~~~~~~~i~~~---g~i~~Li~lL~~~~~~v~~~A~~aL~ 326 (464)
.....+.....+..+.+..+.++-++...|..++..|- .|.......... ..+...-.+|.+++--+++.++..|+
T Consensus 146 ~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg 225 (330)
T d1upka_ 146 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 225 (330)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 88888898889999999999999999999999998754 444433333332 34667778999999999999999999
Q ss_pred HHhcCcchHHHHHH----cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 327 KLCSLKQNKERAVS----AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 327 nL~~~~~~~~~iv~----~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
.+-..+.|...|.. ..-+..++.+|++....++.+|..+..-...+|
T Consensus 226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp 276 (330)
T d1upka_ 226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 276 (330)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence 99999888877643 446788999999999999999999999888654
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.13 Score=47.42 Aligned_cols=242 Identities=12% Similarity=0.044 Sum_probs=171.6
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-chH----HHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 012413 213 VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNK----TLITN-AGAIKSLVYVLKTGTETSKQNAACALMS 286 (464)
Q Consensus 213 ~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-~~~----~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~ 286 (464)
+.+...+.+..|+..|..-+.+.|..++.+..++.+.. +.+ ..+.. ...+..|+... +++++-..+-..|..
T Consensus 63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLRE 140 (330)
T d1upka_ 63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRE 140 (330)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHH
Confidence 44556789999999999999999999999999998753 333 33333 22333333332 456667777778888
Q ss_pred hcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcC---CHHHHHHhhcCCCHHHHHHH
Q 012413 287 LALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAG---AVRPLVGMLAGQGEGMAEKA 362 (464)
Q Consensus 287 Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g---~v~~Lv~lL~~~~~~v~~~A 362 (464)
...++.....+.....+..+.+.+..++=++...|..++..|-. ++.....++... .+.....+|.+++--++..+
T Consensus 141 cik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqS 220 (330)
T d1upka_ 141 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 220 (330)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHH
Confidence 88888888888888889999999999999999999999988865 766665665432 45666788888888889999
Q ss_pred HHHHHHHhCCHhhHHHHHh----cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC---HHhHHHHHHc--CChHHHHHh
Q 012413 363 MVVLSLLAGIAEGREAIVE----ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES---VKNRGLLVRE--GGIPPLVAL 433 (464)
Q Consensus 363 ~~aL~nLa~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~---~~~~~~i~~~--g~i~~Lv~l 433 (464)
+..|+.|-....+...+.. ..-+..++.+|++.+..+|-.|-.+.--..... +.-...+... ..+..|-++
T Consensus 221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f 300 (330)
T d1upka_ 221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF 300 (330)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhC
Confidence 9999999977776665543 446899999999999999999999988887652 3444444443 334444444
Q ss_pred hhc--CCHHHHHHHHHHHHHhhcCC
Q 012413 434 SQT--GSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 434 L~s--~~~~v~~~A~~aL~~L~~~~ 456 (464)
..+ .++....-=...++.|.+-+
T Consensus 301 ~~d~~~DeqF~~EK~~lI~~I~~L~ 325 (330)
T d1upka_ 301 QNDRTEDEQFNDEKTYLVKQIRDLK 325 (330)
T ss_dssp TTTC-CCSHHHHHHHHHHHHHHTCC
T ss_pred CCCCCchhhHHHHHHHHHHHHHhCC
Confidence 332 23333333344555555433
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=96.61 E-value=0.064 Score=50.37 Aligned_cols=203 Identities=12% Similarity=0.091 Sum_probs=127.5
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHHHhcC-
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC----SDPWTQEHSVTALLNLSL- 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~----~~~~v~~~A~~aL~~La~- 248 (464)
+..+.+..+.+++.+...... .|...|..++....... ..+..+..++++ .++.++..+..+++++..
T Consensus 85 GT~~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt~------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~ 157 (336)
T d1lsha1 85 ATSEALLFLKRTLASEQLTSA-EATQIVASTLSNQQATR------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFR 157 (336)
T ss_dssp CSHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCH------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCCH------HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHH
Confidence 446777787888765443222 34445555544322222 345556777765 578899999999998853
Q ss_pred ---CCchHHHHHhcCcHHHHH----HHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC-------C
Q 012413 249 ---HENNKTLITNAGAIKSLV----YVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG-------S 314 (464)
Q Consensus 249 ---~~~~~~~i~~~g~i~~Lv----~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~-------~ 314 (464)
+.... ....++.+. +.+..++.+-+..++.+|+|+. ..+.++.|..++... .
T Consensus 158 ~c~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g----------~p~~i~~l~~~l~~~~~~~~~~~ 223 (336)
T d1lsha1 158 YCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG----------QPNSIKKIQRFLPGQGKSLDEYS 223 (336)
T ss_dssp HHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------CGGGHHHHHTTSTTSSSCCCCSC
T ss_pred HhcCCCCC----cHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC----------CHhHHHHHHHHhccccccccccc
Confidence 11110 112333443 4455678888888999999973 334577787777542 4
Q ss_pred hhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHH
Q 012413 315 SRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAG--QGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAI 392 (464)
Q Consensus 315 ~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL 392 (464)
..+|..|.++|.+++...... +.+.+..++.+ .+.++|..|..+|-.- .|. ...+..+...+
T Consensus 224 ~~vR~aAi~Alr~~~~~~p~~-------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t--~P~-------~~~l~~i~~~l 287 (336)
T d1lsha1 224 TRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIRSCIVFFES--KPS-------VALVSMVAVRL 287 (336)
T ss_dssp HHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHHHHHHHHHT--CCC-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcHH-------HHHHHHHHHcCCCCChHHHHHHHHHHHhc--CCC-------HHHHHHHHHHH
Confidence 569999999999987753211 22445555543 4577788777777542 111 23466677777
Q ss_pred h-cCCHHHHHHHHHHHHHHhhc
Q 012413 393 E-DGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 393 ~-~~~~~v~~~A~~aL~~L~~~ 413 (464)
. +++.+|.......|.+++..
T Consensus 288 ~~E~~~QV~sfv~S~l~~la~s 309 (336)
T d1lsha1 288 RREPNLQVASFVYSQMRSLSRS 309 (336)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTC
T ss_pred HhCcHHHHHHHHHHHHHHHHhC
Confidence 5 57889999988888888863
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=95.19 E-value=1.2 Score=41.15 Aligned_cols=167 Identities=13% Similarity=0.079 Sum_probs=97.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCcHHHHHHHHcc----CCHHHHHHHHHHHHHhcccccc
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNKTLITNAGAIKSLVYVLKT----GTETSKQNAACALMSLALIEEN 293 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~a~~aL~~Ls~~~~~ 293 (464)
.++..+.+++.+.+..-. .|...|..++... ... ..+..+..+++. .++.++..+..++++|....-.
T Consensus 88 ~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt~------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~ 160 (336)
T d1lsha1 88 EALLFLKRTLASEQLTSA-EATQIVASTLSNQQATR------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA 160 (336)
T ss_dssp HHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCH------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCCH------HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence 456667777766443222 2334444444322 211 245556677764 4788888999888888643110
Q ss_pred hhhhhccCChHHHHHHh----hcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCC-------CHHHHHHH
Q 012413 294 KSSIGACGAIPPLVSLL----IYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQ-------GEGMAEKA 362 (464)
Q Consensus 294 ~~~i~~~g~i~~Li~lL----~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~-------~~~v~~~A 362 (464)
...-.....++.+...+ ...+..-+..++.+|+|+.. + +.++.|..++.+. ...++..|
T Consensus 161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aA 230 (336)
T d1lsha1 161 NTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEA 230 (336)
T ss_dssp TCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC-H---------hHHHHHHHHhcccccccccccHHHHHHH
Confidence 00001122345555544 34566667778999999752 2 2567777777432 46789999
Q ss_pred HHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 012413 363 MVVLSLLAGIAEGREAIVEENGIAALVEAIED--GSVKGKEFAVLTLLQ 409 (464)
Q Consensus 363 ~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~ 409 (464)
+++|..++.... ..+.+.+..++.+ .+.++|..|...|..
T Consensus 231 i~Alr~~~~~~p-------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 272 (336)
T d1lsha1 231 IMALRNIAKRDP-------RKVQEIVLPIFLNVAIKSELRIRSCIVFFE 272 (336)
T ss_dssp HHTTTTGGGTCH-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcCc-------HHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 999999985421 1233445555553 467788887777754
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.31 E-value=3.9 Score=37.56 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=97.2
Q ss_pred hcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCCCchHHHHH-hcCcHHHHHHHHccCCHHHHHHHHHHH
Q 012413 217 ESGAVPALVPLLKC-----------SDPWTQEHSVTALLNLSLHENNKTLIT-NAGAIKSLVYVLKTGTETSKQNAACAL 284 (464)
Q Consensus 217 ~~g~i~~Ll~lL~~-----------~~~~v~~~A~~aL~~La~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~aL 284 (464)
..+|+..|+.+|.. .+...+..++.+|..+..+..+...+. ..+++..|+..|.++...++..|...|
T Consensus 43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL 122 (343)
T d2bnxa1 43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 122 (343)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHH
Confidence 34566677766631 236688899999999998876666555 588999999999999999999999999
Q ss_pred HHhcccc---cch----------hhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcch-------HHHHHHcCC
Q 012413 285 MSLALIE---ENK----------SSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLKQN-------KERAVSAGA 343 (464)
Q Consensus 285 ~~Ls~~~---~~~----------~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~~~-------~~~iv~~g~ 343 (464)
..+|..+ ++- ....+.+-+.++++.|... +.+.+..++..+-.|..+.+. +..+...|.
T Consensus 123 ~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl 202 (343)
T d2bnxa1 123 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 202 (343)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred HHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCCh
Confidence 9988542 221 2234456788999988775 567777777777777775432 334455655
Q ss_pred HHHHHHhhcCC-CHHH
Q 012413 344 VRPLVGMLAGQ-GEGM 358 (464)
Q Consensus 344 v~~Lv~lL~~~-~~~v 358 (464)
. .++.-|... ++.+
T Consensus 203 ~-~il~~l~~~~~~~L 217 (343)
T d2bnxa1 203 H-QVLQELREIENEDM 217 (343)
T ss_dssp H-HHHHHHTTCCCHHH
T ss_pred H-HHHHHHHccCChHH
Confidence 4 455555443 4433
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.13 E-value=0.93 Score=47.03 Aligned_cols=250 Identities=10% Similarity=0.068 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc------CCCHHHHHHHHHHHHHhcCCCchHHHHH-----hcCc
Q 012413 193 IKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK------CSDPWTQEHSVTALLNLSLHENNKTLIT-----NAGA 261 (464)
Q Consensus 193 vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~------~~~~~v~~~A~~aL~~La~~~~~~~~i~-----~~g~ 261 (464)
.|..|...+..++......-. ....+.+...+. +.+...+..+..+++.+........... ....
T Consensus 377 ~r~~a~~ll~~l~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 452 (959)
T d1wa5c_ 377 RRRACTDFLKELKEKNEVLVT----NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (959)
T ss_dssp HHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred HHHHHHHHHHHHHHhccccch----HHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhH
Confidence 466677777777765432111 112222222222 3567778888888887753211100000 0111
Q ss_pred ----HHHHHHHHcc---CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 262 ----IKSLVYVLKT---GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 262 ----i~~Lv~lL~~---~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
.+.+...+.. ....++..++|++...+..... .. -...++.++.+|.+++..++..|++++..++.....
T Consensus 453 ~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~-~~--~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~ 529 (959)
T d1wa5c_ 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK-AQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRES 529 (959)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-HH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccH-HH--HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcc
Confidence 2223333433 4577999999999998754211 11 124588899999999999999999999999863211
Q ss_pred H---------HHHH--HcCCHHHHHHhhcCCCHHH-----HHHHHHHHHHHhCC-----HhhHHHHHhcCcHHHHHHHHh
Q 012413 335 K---------ERAV--SAGAVRPLVGMLAGQGEGM-----AEKAMVVLSLLAGI-----AEGREAIVEENGIAALVEAIE 393 (464)
Q Consensus 335 ~---------~~iv--~~g~v~~Lv~lL~~~~~~v-----~~~A~~aL~nLa~~-----~~~~~~i~~~g~i~~Lv~lL~ 393 (464)
. +.+. -...+..|+..+....... ...++.++..+... .+.... .++.|...+.
T Consensus 530 ~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~-----i~~~l~~~~~ 604 (959)
T d1wa5c_ 530 NTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQ-----LLAQFIEIVT 604 (959)
T ss_dssp SSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHHHHH
T ss_pred cccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 0 0010 0113444555554332111 23355555555421 111111 2344444332
Q ss_pred ----c-CCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 394 ----D-GSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 394 ----~-~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+ .++.....+..+|..+.... +..... .....+|.+...+.....+....+...+..+.+.
T Consensus 605 ~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~ 671 (959)
T d1wa5c_ 605 IMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (959)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHhcCccchHHHHHHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh
Confidence 2 34667777777888776532 232222 2345577777777776666666666666666543
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.23 E-value=2.5 Score=39.01 Aligned_cols=128 Identities=20% Similarity=0.166 Sum_probs=88.4
Q ss_pred hhhHHHHHHHHHHHhcCcchHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC---HhhHHH----------HH
Q 012413 315 SRGKKDALTTLYKLCSLKQNKERAVS-AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI---AEGREA----------IV 380 (464)
Q Consensus 315 ~~v~~~A~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~---~~~~~~----------i~ 380 (464)
......++.||..+..+..+...++. .+++..++..|.++...++..|..+|..+|.. +.+-.. ..
T Consensus 70 ~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~ 149 (343)
T d2bnxa1 70 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 149 (343)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc
Confidence 34667899999999999988888876 77889999999999999999999999999842 222222 22
Q ss_pred hcCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCH--Hh----HHHHHHcCChHHHHHhhhcCCHHHH
Q 012413 381 EENGIAALVEAIEDG-SVKGKEFAVLTLLQLCAESV--KN----RGLLVREGGIPPLVALSQTGSVRAK 442 (464)
Q Consensus 381 ~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~L~~~~~--~~----~~~i~~~g~i~~Lv~lL~s~~~~v~ 442 (464)
+.+-..++++.++.. +.+.+..++..+-.|....+ .. |..+...|..+.+-.+=..+++.+.
T Consensus 150 e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~ 218 (343)
T d2bnxa1 150 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 218 (343)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred CCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHHH
Confidence 345678888888754 56677777776766665433 22 4455666755544444333455443
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.21 E-value=0.94 Score=47.01 Aligned_cols=125 Identities=18% Similarity=0.109 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhcCC---C---------chH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS--DPWTQEHSVTALLNLSLH---E---------NNK 253 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~--~~~v~~~A~~aL~~La~~---~---------~~~ 253 (464)
+.++..|+.|=..|..+..+ .|.+..|+..+.++ +..+|..|+-.|.|.... + +.|
T Consensus 14 s~~~~~~k~Ae~~L~~~~~~----------p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k 83 (959)
T d1wa5c_ 14 SVIASTAKTSERNLRQLETQ----------DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNV 83 (959)
T ss_dssp TTSGGGHHHHHHHHHHHHTS----------TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHH
T ss_pred CCChHHHHHHHHHHHHHHcC----------CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHH
Confidence 45677889999888776544 37778888888763 568999999999887531 1 112
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
.. .-..|+..|.+++..++...+.++..++..+--. ...+.++.|++.+.+++......++.+|..+++
T Consensus 84 ~~-----Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~---~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k 152 (959)
T d1wa5c_ 84 EL-----IKKEIVPLMISLPNNLQVQIGEAISSIADSDFPD---RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFK 152 (959)
T ss_dssp HH-----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred HH-----HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc---ccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 22 2234666777788999999999999987642100 135678888888888888888888888888875
|