Citrus Sinensis ID: 012439

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
MVGLIDLNKTKDDENPSSGSLASASGVSSELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHDELIEQKVRKGKIKEDGDEESVEVAAKSSTPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELKIGIRRAAQVKNGATFPSFCNQHSSTSSVTEVVDAIARKRAFSISYNPRASASEFVIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWRCLLVRWDDVESNRHNRVSPWEIEPSGSNILVTSGLRRTRIGLPLWRPEFPVPEGIGVTDFGESLRFQTVLQGQEISPKSPYGRAPTNNEAHDIAALESLTVFRYQDLFIIGTCTRYRSAVS
ccccccccccccccccccccccccccccHHHHHHHccccccccccccEEEEcccccccccccccccccccccccccccEEEEEEEEccccccHHHHHHHcccccHHHHHHHHccccccccccHHHHHHccccccEEEEEEEEccccccccccEEEcccHHHcccccccccccccEEEEEEEccccEEEEEEEEEccccEEEEccccHHHHHccccccccEEEEEEccccccEEEEEEHHccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccEEEEEEEcccccccEEEEEEEEEcccccccccccccEEEEEEEccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccc
ccEEEEcccccccccccccccccccHHHHHHHHHHccccccccccccEEEEcccccHHHHHHccccccccccccccEEEEEEEEEEEccccccEEEEEEEEcccccHHHHccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEEEccccccEEEccccEEEEcccEEEcccEEEEEEcccccEEEEEEEccccccccccccEcccccHHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHccccEEEEEEEEEEcccccccEcccEEEEEccccccccccccccEEEEEEcccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccc
mvglidlnktkddenpssgslasasgvsselwhacagplislpkrgsvvvyfpqghlehvsdfsaaasaaydipphlfcrvadvklhadaasDEVYAQVSLVHDELIEQKVRkgkikedgdeeSVEVAaksstphmfcktltasdtstcggfsvprraaedcfppldymqqrpsqqlvakdlhgvewkfrhiyrgqprrhlltTGWSAFvnkkklvsgdavlflrgedgelKIGIRRAAqvkngatfpsfcnqhsstssVTEVVDAIARKRAFSisynprasasefvipvnkflksldhpfaegmrfkmrseTEDAAEQRCSGLivgvsdmdpvrwpgskwrcllvrwddvesnrhnrvspweiepsgsnilvtsglrrtriglplwrpefpvpegigvtdfgeslRFQTVlqgqeispkspygraptnneahdiAALESLTVFRYQDLFIIGTCTRYRSAVS
mvglidlnktkddenpssGSLASASGVSSELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHDELIEQKvrkgkikedgdeesvevaaksstphmfCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELKIGIRRAAQVKNGATfpsfcnqhsstssVTEVVDAIARKRAFSisynprasasefvIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGlivgvsdmdpvrwPGSKWRCLLVRWDDVesnrhnrvspweiepsgsnilvtsgLRRTRIGLPLWRPEFPVPEGIGVTDFGESLRFQTVLQGQEISPKSPYGRAPTNNEAHDIAALESLTVFRYQDLFIIGTCTRYRSAVS
MVGLIDLNKTKDDENPssgslasasgvssELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFsaaasaaYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHDELIEQKVRKGKIKEDGDEESVEVAAKSSTPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELKIGIRRAAQVKNGATFPSFCNQHSSTSSVTEVVDAIARKRAFSISYNPRASASEFVIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWRCLLVRWDDVESNRHNRVSPWEIEPSGSNILVTSGLRRTRIGLPLWRPEFPVPEGIGVTDFGESLRFQTVLQGQEISPKSPYGRAPTNNEAHDIAALESLTVFRYQDLFIIGTCTRYRSAVS
*****************************ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHDELIE***************************MFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQ****QQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELKIGIRRAAQVKNGATF******************AIARKRAFSISYNPRASASEFVIPVNKFLKSLDHPFAE****************RCSGLIVGVSDMDPVRWPGSKWRCLLVRWDDVESNRHNRVSPWEIEPSGSNILVTSGLRRTRIGLPLWRPEFPVPEGIGVTDFGESLRFQTVLQ*******************HDIAALESLTVFRYQDLFIIGTCTRY*****
*****************************ELWHACAGPLISLPKRGSVVVYFPQGHLEHVS*********YDIPPHLFCRVADVKLHAD****EVYAQVSLVHDELIE***************************MFCKTLTASDTSTCGGFSVPRRAAEDCFPP********SQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELKIGIRRAAQ**************SSTSSVTEVVDAIARKRAFSISYNPRASASEFVIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWRCLLVRWDDVESNRHNRVSPWEIEPS**********************************************************************************FIIGTCTR******
MVGLIDLNKT*******************ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHDELIEQKVR********************TPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELKIGIRRAAQVKNGATFPSFCNQ********EVVDAIARKRAFSISYNPRASASEFVIPVNKFLKSLDHPFAEGMRFKM**********RCSGLIVGVSDMDPVRWPGSKWRCLLVRWDDVESNRHNRVSPWEIEPSGSNILVTSGLRRTRIGLPLWRPEFPVPEGIGVTDFGESLRFQTVLQGQEISPKSPYGRAPTNNEAHDIAALESLTVFRYQDLFIIGTCTRYRSAVS
*VG*****K**************ASGVSSELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHDEL*************************STPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELKIGIRRAAQVKNGATFPS*CNQHSSTSSVTEVVDAIARKRAFSISYNPRASASEFVIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWRCLLVRWDDVESNRHNRVSPWEIEPSGSNILVTSGLR*****************************************************************FRYQ*LFIIG**********
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MVGLIDLNKTKDDENPSSGSLASASGVSSELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHDELIEQKVRKGKIKEDGDEESVEVAAKSSTPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELKIGIRRAAQVKNGATFPSFCNQHSSTSSVTEVVDAIARKRAFSISYNPRASASEFVIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWRCLLVRWDDVESNRHNRVSPWEIEPSGSNILVTSGLRRTRIGLPLWRPEFPVPEGIGVTDFGESLRFQTVLQGQEISPKSPYGRAPTNNEAHDIAALESLTVFRYQDLFIIGTCTRYRSAVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query463 2.2.26 [Sep-21-2011]
O23661 608 Auxin response factor 3 O yes no 0.898 0.684 0.634 1e-159
Q0JKI9 718 Auxin response factor 2 O yes no 0.894 0.576 0.593 1e-138
Q8S985 712 Auxin response factor 15 no no 0.861 0.560 0.621 1e-135
Q5JMM1 731 Auxin response factor 3 O no no 0.935 0.592 0.536 1e-128
Q9ZTX9 788 Auxin response factor 4 O no no 0.835 0.491 0.558 1e-119
Q0DGS1 687 Auxin response factor 14 no no 0.853 0.574 0.539 1e-117
Q5JK20 808 Auxin response factor 4 O no no 0.805 0.461 0.463 2e-97
Q94JM3 859 Auxin response factor 2 O no no 0.721 0.388 0.490 1e-96
A2ZET6 853 Auxin response factor 23 N/A no 0.721 0.391 0.491 5e-93
Q2R3F5 853 Auxin response factor 23 no no 0.712 0.386 0.48 7e-93
>sp|O23661|ARFC_ARATH Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2 Back     alignment and function desciption
 Score =  563 bits (1450), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/449 (63%), Positives = 340/449 (75%), Gaps = 33/449 (7%)

Query: 1   MVGLIDLN--KTKDDEN----PSSGSLA------------------SASGVSSELWHACA 36
           M GLIDLN  +T++DE     PSS S +                  +  GV  ELWHACA
Sbjct: 1   MGGLIDLNVMETEEDETQTQTPSSASGSVSPTSSSSASVSVVSSNSAGGGVCLELWHACA 60

Query: 37  GPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDIPPHLFCRVADVKLHADAASDEVY 96
           GPLISLPKRGS+V+YFPQGHLE   DFSAA    Y +PPH+FCR+ DVKLHA+  +DEVY
Sbjct: 61  GPLISLPKRGSLVLYFPQGHLEQAPDFSAAI---YGLPPHVFCRILDVKLHAETTTDEVY 117

Query: 97  AQVSLV-HDELIEQKVRKGKIKEDGDEESVEVAAKSSTPHMFCKTLTASDTSTCGGFSVP 155
           AQVSL+   E IE+KVR+G I  DG EE  EV  +S+TPHMFCKTLTASDTST GGFSVP
Sbjct: 118 AQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTSTHGGFSVP 177

Query: 156 RRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKKKL 215
           RRAAEDCFPPLDY Q RPSQ+L+A+DLHG+EW+FRHIYRGQPRRHLLTTGWSAFVNKKKL
Sbjct: 178 RRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKL 237

Query: 216 VSGDAVLFLRGEDGELKIGIRRAAQVKNGATFPSFCNQHSSTSSVTEVVDAIARKRAFSI 275
           VSGDAVLFLRG+DG+L++G+RRA+Q++  A   +  NQ+ + ++ +EV  AI+    FSI
Sbjct: 238 VSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSI 297

Query: 276 SYNPRASASEFVIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVR 335
           SYNP+AS S F+IP  KFLK +D+PF  GMRFK R E+EDA+E+R  G+I G+SD+DP+R
Sbjct: 298 SYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGIISGISDLDPIR 357

Query: 336 WPGSKWRCLLVRWDDVESNRH-NRVSPWEIEPSG----SNILVTSGLRRTRIGLPLWRPE 390
           WPGSKWRCLLVRWDD+ +N H  RVSPWEIEPSG    S   VT+G +R+RIG    +P+
Sbjct: 358 WPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNSGSFVTTGPKRSRIGFSSGKPD 417

Query: 391 FPVPEGIGVTDFGESLRFQTVLQGQEISP 419
            PV EGI  TDF ESLRFQ VLQGQEI P
Sbjct: 418 IPVSEGIRATDFEESLRFQRVLQGQEIFP 446
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q0JKI9|ARFB_ORYSJ Auxin response factor 2 OS=Oryza sativa subsp. japonica GN=ARF2 PE=2 SV=1 Back     alignment and function description
>sp|Q8S985|ARFO_ORYSJ Auxin response factor 15 OS=Oryza sativa subsp. japonica GN=ARF15 PE=2 SV=1 Back     alignment and function description
>sp|Q5JMM1|ARFC_ORYSJ Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZTX9|ARFD_ARATH Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=1 SV=1 Back     alignment and function description
>sp|Q0DGS1|ARFN_ORYSJ Auxin response factor 14 OS=Oryza sativa subsp. japonica GN=ARF14 PE=2 SV=2 Back     alignment and function description
>sp|Q5JK20|ARFD_ORYSJ Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1 Back     alignment and function description
>sp|Q94JM3|ARFB_ARATH Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2 Back     alignment and function description
>sp|A2ZET6|ARFW_ORYSI Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1 Back     alignment and function description
>sp|Q2R3F5|ARFW_ORYSJ Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
356521420 709 PREDICTED: auxin response factor 3-like 0.933 0.609 0.685 1e-175
255562988 730 Auxin response factor, putative [Ricinus 0.894 0.567 0.678 1e-173
359483904 740 PREDICTED: auxin response factor 3-like 0.894 0.559 0.692 1e-172
297740441 701 unnamed protein product [Vitis vinifera] 0.887 0.586 0.694 1e-172
356548656 714 PREDICTED: auxin response factor 3-like 0.896 0.581 0.701 1e-172
302398565 712 ARF domain class transcription factor [M 0.894 0.581 0.686 1e-172
147770011 831 hypothetical protein VITISV_009739 [Viti 0.894 0.498 0.649 1e-168
356549269 736 PREDICTED: auxin response factor 3-like 0.892 0.561 0.658 1e-167
225030806 718 auxin response factor 3b [Lotus japonicu 0.889 0.573 0.660 1e-164
224077042 709 predicted protein [Populus trichocarpa] 0.965 0.630 0.631 1e-163
>gi|356521420|ref|XP_003529354.1| PREDICTED: auxin response factor 3-like [Glycine max] Back     alignment and taxonomy information
 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 305/445 (68%), Positives = 364/445 (81%), Gaps = 13/445 (2%)

Query: 1   MVGLIDLNK-TKDDENPSSGSLASASGVSSELWHACAGPLISLPKRGSVVVYFPQGHLE- 58
           M GLIDLN  T+DDE PSSGS   +S V  ELWHACAGPLISLPK+GSVVVYFPQGHLE 
Sbjct: 1   MAGLIDLNNATEDDEMPSSGS---SSTVCLELWHACAGPLISLPKKGSVVVYFPQGHLEQ 57

Query: 59  HVSDFSAAASAAYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHD-ELIEQKVRKGKIK 117
           H+ DF   ASA  +IP H+FCRV DVKLHA+  SDEV+ QV LV + E + QK+R+G+  
Sbjct: 58  HLHDFPLPASA--NIPSHVFCRVLDVKLHAEEGSDEVHCQVVLVPETEQVHQKLREGEFD 115

Query: 118 EDGDEESVEVAAKSSTPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQL 177
            DG+EE  E   KS+TPHMFCKTLTASDTST GGFSVPRRAAEDCFPPLDY QQRPSQ+L
Sbjct: 116 ADGEEEDAEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQEL 175

Query: 178 VAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELKIGIRR 237
           VAKDLHG EW+FRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGEL++GIRR
Sbjct: 176 VAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRR 235

Query: 238 AAQVKNGATFPSFCNQHSSTSSVTEVVDAIARKRAFSISYNPRASASEFVIPVNKFLKSL 297
           AAQ+K+G+TF +   Q  S +S+ +VV+A++ + AFSI YNPR S SEF+IP+++FLKSL
Sbjct: 236 AAQLKSGSTFSALSGQQLSPTSLMDVVNALSARCAFSIHYNPRVSTSEFIIPIHRFLKSL 295

Query: 298 DHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWRCLLVRWDDVESNRHN 357
           D+ ++ GMRF+MR ETEDAAE+R +GLIVG++D+DPVRWPGSKWRCL+VRWDD+E  RHN
Sbjct: 296 DYSYSAGMRFRMRFETEDAAERRFTGLIVGIADVDPVRWPGSKWRCLMVRWDDLEVTRHN 355

Query: 358 RVSPWEIEPSGS----NILVTSGLRRTRIGLPLWRPEFPVPEGIGVTDFGESLRFQTVLQ 413
           RVSPWEIEPSGS    N L+++GL+RT+IGLP  + EFPV   IG +DFGESLRFQ VLQ
Sbjct: 356 RVSPWEIEPSGSASTANNLMSAGLKRTKIGLPSAKLEFPVSNAIGTSDFGESLRFQKVLQ 415

Query: 414 GQEISPKSPYGRAPTNNEAHDIAAL 438
           GQE+   +P   +  N ++H ++ L
Sbjct: 416 GQEMLGVNPTYDS-INAQSHQVSDL 439

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255562988|ref|XP_002522498.1| Auxin response factor, putative [Ricinus communis] gi|223538189|gb|EEF39798.1| Auxin response factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359483904|ref|XP_002273401.2| PREDICTED: auxin response factor 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740441|emb|CBI30623.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356548656|ref|XP_003542716.1| PREDICTED: auxin response factor 3-like [Glycine max] Back     alignment and taxonomy information
>gi|302398565|gb|ADL36577.1| ARF domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|147770011|emb|CAN65414.1| hypothetical protein VITISV_009739 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356549269|ref|XP_003543018.1| PREDICTED: auxin response factor 3-like [Glycine max] Back     alignment and taxonomy information
>gi|225030806|gb|ACN79516.1| auxin response factor 3b [Lotus japonicus] Back     alignment and taxonomy information
>gi|224077042|ref|XP_002305105.1| predicted protein [Populus trichocarpa] gi|222848069|gb|EEE85616.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
TAIR|locus:2057609 608 ETT "ETTIN" [Arabidopsis thali 0.835 0.636 0.671 1.4e-150
TAIR|locus:2175098 788 ARF4 "auxin response factor 4" 0.846 0.497 0.558 1.6e-113
TAIR|locus:2174013 859 ARF2 "auxin response factor 2" 0.699 0.377 0.498 4.7e-87
TAIR|locus:2152642 811 ARF8 "auxin response factor 8" 0.788 0.450 0.464 3.9e-83
TAIR|locus:2204237 935 ARF6 "auxin response factor 6" 0.790 0.391 0.467 2.2e-82
TAIR|locus:2035454 902 MP "MONOPTEROS" [Arabidopsis t 0.732 0.375 0.493 5.8e-82
TAIR|locus:2202205 1086 ARF19 "auxin response factor 1 0.760 0.324 0.463 3.2e-81
TAIR|locus:2025991 665 ARF1 "auxin response factor 1" 0.712 0.496 0.479 2.2e-80
TAIR|locus:2138096 638 ARF9 "auxin response factor 9" 0.701 0.509 0.465 6.2e-78
TAIR|locus:2039124 622 ARF11 "auxin response factor 1 0.710 0.528 0.458 2.7e-75
TAIR|locus:2057609 ETT "ETTIN" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1405 (499.6 bits), Expect = 1.4e-150, Sum P(3) = 1.4e-150
 Identities = 266/396 (67%), Positives = 317/396 (80%)

Query:    30 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXYDIPPHLFCRVADVKLHAD 89
             ELWHACAGPLISLPKRGS+V+YFPQGHLE   DF       Y +PPH+FCR+ DVKLHA+
Sbjct:    54 ELWHACAGPLISLPKRGSLVLYFPQGHLEQAPDFSAAI---YGLPPHVFCRILDVKLHAE 110

Query:    90 AASDEVYAQVSLVHD-ELIEQKVRKGKIKEDGDEESVEVAAKSSTPHMFCKTLTASDTST 148
               +DEVYAQVSL+ + E IE+KVR+G I  DG EE  EV  +S+TPHMFCKTLTASDTST
Sbjct:   111 TTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTST 170

Query:   149 CGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSA 208
              GGFSVPRRAAEDCFPPLDY Q RPSQ+L+A+DLHG+EW+FRHIYRGQPRRHLLTTGWSA
Sbjct:   171 HGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSA 230

Query:   209 FVNKKKLVSGDAVLFLRGEDGELKIGIRRAAQVKNGATFPSFCNQHSSTSSVTEVVDAIA 268
             FVNKKKLVSGDAVLFLRG+DG+L++G+RRA+Q++  A   +  NQ+ + ++ +EV  AI+
Sbjct:   231 FVNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAIS 290

Query:   269 RKRAFSISYNPRASASEFVIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGV 328
                 FSISYNP+AS S F+IP  KFLK +D+PF  GMRFK R E+EDA+E+R  G+I G+
Sbjct:   291 THSVFSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGIISGI 350

Query:   329 SDMDPVRWPGSKWRCLLVRWDDVESNRHN-RVSPWEIEPSGS----NILVTSGLRRTRIG 383
             SD+DP+RWPGSKWRCLLVRWDD+ +N H  RVSPWEIEPSGS       VT+G +R+RIG
Sbjct:   351 SDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNSGSFVTTGPKRSRIG 410

Query:   384 LPLWRPEFPVPEGIGVTDFGESLRFQTVLQGQEISP 419
                 +P+ PV EGI  TDF ESLRFQ VLQGQEI P
Sbjct:   411 FSSGKPDIPVSEGIRATDFEESLRFQRVLQGQEIFP 446
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS
GO:0009850 "auxin metabolic process" evidence=TAS
GO:0010158 "abaxial cell fate specification" evidence=IGI
GO:0010050 "vegetative phase change" evidence=IGI;RCA;IMP
GO:0007389 "pattern specification process" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0048438 "floral whorl development" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=ISS
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O23661ARFC_ARATHNo assigned EC number0.63470.89840.6842yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00003037001
SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (737 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 2e-41
pfam0236297 pfam02362, B3, B3 DNA binding domain 3e-28
smart0101996 smart01019, B3, B3 DNA binding domain 5e-24
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 5e-22
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 5e-05
cd10016142 cd10016, EcoRII_N, N-terminal domain of type IIE r 1e-04
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  141 bits (358), Expect = 2e-41
 Identities = 48/83 (57%), Positives = 62/83 (74%)

Query: 263 VVDAIARKRAFSISYNPRASASEFVIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCS 322
              A +    F + YNPRAS SEFV+P  K+LK++++PF+ GMRFKMR ETED++E+R S
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNNPFSVGMRFKMRFETEDSSERRFS 60

Query: 323 GLIVGVSDMDPVRWPGSKWRCLL 345
           G I GVSD+DP+RWP SKWR L 
Sbjct: 61  GTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information
>gnl|CDD|197382 cd10016, EcoRII_N, N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 463
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.77
KOG06441113 consensus Uncharacterized conserved protein, conta 99.51
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.16
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.9
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information 
Probab=100.00  E-value=8.5e-37  Score=254.33  Aligned_cols=83  Identities=59%  Similarity=1.035  Sum_probs=81.8

Q ss_pred             HHHHHHcCCceEEEEeCCCCCCceeEehhhHhhhcCCCcccCCeEEEEeeccccccceeeeEEEEeecCCCCCCCCCCce
Q 012439          263 VVDAIARKRAFSISYNPRASASEFVIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWR  342 (463)
Q Consensus       263 a~~a~~tg~~F~V~Y~Pr~~~~EFvVp~~ky~~a~~~~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~~dp~~Wp~S~WR  342 (463)
                      |+||+++|++|+|+||||++++|||||++||++||+++|++||||||+||+||+++++|+|||+||++.||++||+|+||
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~WR   80 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKWR   80 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeE
Q 012439          343 CLL  345 (463)
Q Consensus       343 ~L~  345 (463)
                      |||
T Consensus        81 ~Lq   83 (83)
T PF06507_consen   81 MLQ   83 (83)
T ss_pred             cCc
Confidence            997

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 2e-10
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 136 MFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIYRG 195
           +F K +T SD        +P+  AE  FP            L  +D++G  W+FR+ Y  
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN 72
Query: 196 QPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GEDGELKIGIRRAAQVKNGATFPS 249
             + ++LT GWS FV +K L +GD V F R  G+D +L IG +  +     A+ PS
Sbjct: 73  SSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLDASGPS 128

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 3e-39
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  137 bits (345), Expect = 3e-39
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)

Query: 134 PHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIY 193
             +F K +T SD        +P+  AE  FP            L  +D++G  W+FR+ Y
Sbjct: 11  EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSY 70

Query: 194 RGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GEDGELKIGIRRAAQVKNGATFPS 249
               + ++LT GWS FV +K L +GD V F R  G+D +L IG +  +     A+ PS
Sbjct: 71  WNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLDASGPS 128

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.97
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 99.79
1yel_A104 AT1G16640; CESG, protein structure initiative, str 99.64
1na6_A404 Ecorii, restriction endonuclease ecorii; site-spec 93.8
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.97  E-value=5.6e-30  Score=227.09  Aligned_cols=112  Identities=31%  Similarity=0.507  Sum_probs=103.6

Q ss_pred             CCCcceEEEeccccCCCCCCceeeeccchhhcCCCCCcCCCCCceEEEEEeCCCCEEEEEEEEeCCCCceeeccchhHHH
Q 012439          131 SSTPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFV  210 (463)
Q Consensus       131 ~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~lLTtGWs~FV  210 (463)
                      .+..++|+|+||+|||+++++|+||+++|+.|||.++.++..+.++|.++|.+|++|+|+|+||+++++|+|++||+.||
T Consensus         8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV   87 (130)
T 1wid_A            8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFV   87 (130)
T ss_dssp             CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHH
T ss_pred             CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHH
Confidence            45567999999999999999999999999999999997766788999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCEEEEEecCC--CcEEEEEEEccccc
Q 012439          211 NKKKLVSGDAVLFLRGED--GELKIGIRRAAQVK  242 (463)
Q Consensus       211 ~~K~L~aGD~VvF~R~~~--G~l~VgIRRa~~~~  242 (463)
                      ++|+|++||+|+|++.++  +.|+|++||+....
T Consensus        88 ~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~  121 (130)
T 1wid_A           88 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  121 (130)
T ss_dssp             HHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             HHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence            999999999999999864  57999999998654
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 463
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 1e-36
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 2e-27
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 9e-13
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  128 bits (324), Expect = 1e-36
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 2/111 (1%)

Query: 132 STPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRH 191
           S   +F K +T SD        +P+  AE  FP            L  +D++G  W+FR+
Sbjct: 2   SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRY 61

Query: 192 IYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GEDGELKIGIRRAAQ 240
            Y    + ++LT GWS FV +K L +GD V F R  G+D +L IG +  + 
Sbjct: 62  SYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG 112
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.95
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.8
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.54
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=5.2e-28  Score=207.31  Aligned_cols=107  Identities=33%  Similarity=0.541  Sum_probs=100.9

Q ss_pred             cceEEEeccccCCCCCCceeeeccchhhcCCCCCcCCCCCceEEEEEeCCCCEEEEEEEEeCCCCceeeccchhHHHhhc
Q 012439          134 PHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKK  213 (463)
Q Consensus       134 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~lLTtGWs~FV~~K  213 (463)
                      .++|.|+||+|||++++||+||++++++|||+++...+.+++.|.+.|.+|++|+|+|+||++.++|+|++||..||++|
T Consensus         4 ~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~~   83 (117)
T d1wida_           4 EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEK   83 (117)
T ss_dssp             EEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHHT
T ss_pred             ceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHHHc
Confidence            46999999999999999999999999999999998888899999999999999999999998888999999999999999


Q ss_pred             CCCCCCEEEEEec--CCCcEEEEEEEccc
Q 012439          214 KLVSGDAVLFLRG--EDGELKIGIRRAAQ  240 (463)
Q Consensus       214 ~L~aGD~VvF~R~--~~G~l~VgIRRa~~  240 (463)
                      +|++||+|+|++.  ++++|+|++||+..
T Consensus        84 ~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~  112 (117)
T d1wida_          84 NLRAGDVVSFSRSNGQDQQLYIGWKSRSG  112 (117)
T ss_dssp             TCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred             CCCCCCEEEEEEEeCCCCEEEEEEEECCC
Confidence            9999999999996  46789999999864
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure