Citrus Sinensis ID: 012441

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLSILLHCHCQPRHNLFLYLWYSYRIQLKLSEGYKCRKGFL
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHEHHHHHcccEEEEEccccccccccccc
msrapvdhstslsRTFKYLLATQflsrgipfvfnSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRAdikcdgasREENAAKLLKVAWLTLPLGIFITIGACFFVLWwqglsysnpyAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFgafktsdlfpfrlgnmmSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFlpfeessyatfarsasgqypqkskKIGNSLAEALKLVLLIGLVFmafgpsysYSLVRLLYgkkwsdgeastaLRYYCLYVVVLAMNGTSEAFLHAVATEDQlkrsndslLVFSVIYIVMNVILIQSAGSVGLILANSLSILLhchcqprhnlFLYLWYSYRIQLKLsegykcrkgfl
msrapvdhstslsRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFarsasgqypqkSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLSILLHCHCQPRHNLFLYLWYSYRIQLKlsegykcrkgfl
MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNllllrlrlVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASlflgywgyfllfgafKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLSILLHCHCQPRHNLFLYLWYSYRIQLKLSEGYKCRKGFL
*************RTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA**************GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLSILLHCHCQPRHNLFLYLWYSYRIQLKLSEGYKC*****
****************KYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRAD*******R*ENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS************GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLSILLHCHCQPRHNLFLYLWYSYRIQLKLSEGYKCRKGFL
**********SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATF*************KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLSILLHCHCQPRHNLFLYLWYSYRIQLKLSEGYKCRKGFL
*********TSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIK*****REENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLSILLHCHCQPRHNLFLYLWYSYRIQLKLSEGYKCRKG**
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
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MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLSILLHCHCQPRHNLFLYLWYSYRIQLKLSEGYKCRKGFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query463 2.2.26 [Sep-21-2011]
Q54IV7540 Protein RFT1 homolog OS=D yes no 0.870 0.746 0.351 3e-63
Q0D2E8539 Protein RFT1 homolog OS=X yes no 0.859 0.738 0.344 2e-50
Q96AA3541 Protein RFT1 homolog OS=H yes no 0.848 0.726 0.316 4e-44
Q8C3B8541 Protein RFT1 homolog OS=M yes no 0.840 0.719 0.323 6e-43
Q9Y123556 Protein RFT1 homolog OS=D yes no 0.857 0.714 0.287 3e-36
Q6FPE8551 Oligosaccharide transloca yes no 0.892 0.749 0.298 6e-35
P38206574 Oligosaccharide transloca yes no 0.859 0.693 0.277 2e-34
O94302527 Oligosaccharide transloca yes no 0.848 0.745 0.281 1e-31
P40913556 Oligosaccharide transloca yes no 0.939 0.782 0.258 1e-31
Q754Q7552 Oligosaccharide transloca yes no 0.825 0.692 0.287 5e-29
>sp|Q54IV7|RFT1_DICDI Protein RFT1 homolog OS=Dictyostelium discoideum GN=rft1 PE=3 SV=1 Back     alignment and function desciption
 Score =  243 bits (620), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 160/455 (35%), Positives = 250/455 (54%), Gaps = 52/455 (11%)

Query: 18  YLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADI 77
           YL+  Q +SR   F+ N+ ++  + ++ + + A+Q+ L  + +LFLSRE  RRAC R +I
Sbjct: 20  YLIGLQIISRLFTFIINTLVIVGVDDSIFGVSAIQYQLLSSIILFLSREAIRRACTRVNI 79

Query: 78  KCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWW---QGLSYSNPYAQAIFINGF 134
             D  + + N   ++ ++WL LP+GI ++I    F L+    + L   N Y   + +   
Sbjct: 80  T-DKLNNDNNLKSVINLSWLVLPIGIGLSIIFENFFLYTSTKETLEILN-YHYGLRLFTI 137

Query: 135 ACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIV-FALSQ 193
           + +LELL+EP+YIL+QNLLL ++R  VE  A F + F+    IV    +  G++ F  +Q
Sbjct: 138 SSILELLSEPMYILAQNLLLFKIRTTVEGFALFFKTFSTYYFIVI---LNMGLIGFGYAQ 194

Query: 194 VAYAASLFLGYWGYFLLF--------------GAFKTSD-LFPFRLGNMMSYDKQLANMC 238
           + Y+ +L +GY+GYFL+                 FK+ D LFP +    +  D+ L  + 
Sbjct: 195 ILYSLTLVIGYFGYFLINIINNNKNKDNKEFSNCFKSIDQLFP-KFSTRI--DRNLIKLS 251

Query: 239 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA 298
            L+T+QS  KLLLQEGEK VL + +T   QA++ +V  LGSL+VR +FLP EE+ +  F 
Sbjct: 252 LLYTWQSIYKLLLQEGEKFVLFFSETNQGQAIFAIVSNLGSLIVRFLFLPIEETCFLMFP 311

Query: 299 R-------------------------SASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAF 333
           +                           +       K   N L   +K ++L+ LVF  F
Sbjct: 312 KLFPTINNNNNNNNNNNNNNNNNNKNQENNNNNDDFKNGANVLIVIMKFLILVSLVFTCF 371

Query: 334 GPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSND 393
           GP +S+ L+ LLY  K+ D  A   L +YC+YV  LA+NG SE+F+H+VA EDQLK  N 
Sbjct: 372 GPGFSHLLLNLLYNNKFRDTNAGVLLGFYCIYVGFLAINGVSESFVHSVAKEDQLKTVNW 431

Query: 394 SLLVFSVIYIVMNVILIQSAGSVGLILANSLSILL 428
            L++   IY++  +I  +   ++G+ILAN L+I L
Sbjct: 432 VLIIIGFIYLLFTLIFCKLFQNIGIILANCLNIKL 466
May be involved in N-linked oligosaccharide assembly.
Dictyostelium discoideum (taxid: 44689)
>sp|Q0D2E8|RFT1_XENTR Protein RFT1 homolog OS=Xenopus tropicalis GN=rft1 PE=2 SV=1 Back     alignment and function description
>sp|Q96AA3|RFT1_HUMAN Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 SV=1 Back     alignment and function description
>sp|Q8C3B8|RFT1_MOUSE Protein RFT1 homolog OS=Mus musculus GN=Rft1 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y123|RFT1_DROME Protein RFT1 homolog OS=Drosophila melanogaster GN=CG3149 PE=2 SV=1 Back     alignment and function description
>sp|Q6FPE8|RFT1_CANGA Oligosaccharide translocation protein RFT1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RFT1 PE=3 SV=1 Back     alignment and function description
>sp|P38206|RFT1_YEAST Oligosaccharide translocation protein RFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFT1 PE=1 SV=1 Back     alignment and function description
>sp|O94302|RFT1_SCHPO Oligosaccharide translocation protein rft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rft1 PE=3 SV=1 Back     alignment and function description
>sp|P40913|RFT1_KLULA Oligosaccharide translocation protein RFT1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RFT1 PE=3 SV=2 Back     alignment and function description
>sp|Q754Q7|RFT1_ASHGO Oligosaccharide translocation protein RFT1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RFT1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
255539823436 Oligosaccharide translocation protein rf 0.922 0.979 0.789 0.0
356531685518 PREDICTED: protein RFT1 homolog [Glycine 0.909 0.812 0.779 0.0
356544271518 PREDICTED: LOW QUALITY PROTEIN: protein 0.909 0.812 0.765 0.0
449458359528 PREDICTED: protein RFT1 homolog [Cucumis 0.917 0.804 0.755 0.0
334187490 611 lipid transporter [Arabidopsis thaliana] 0.913 0.692 0.723 0.0
224138472476 predicted protein [Populus trichocarpa] 0.825 0.802 0.808 1e-176
38260621481 nuclear division RFT1-like protein [Sisy 0.825 0.794 0.770 1e-172
38260690478 nuclear division RFT1-like protein [Arab 0.825 0.799 0.743 1e-168
38260636478 nuclear division RFT1-like protein [Arab 0.825 0.799 0.743 1e-168
297806793478 hypothetical protein ARALYDRAFT_325378 [ 0.825 0.799 0.743 1e-168
>gi|255539823|ref|XP_002510976.1| Oligosaccharide translocation protein rft1, putative [Ricinus communis] gi|223550091|gb|EEF51578.1| Oligosaccharide translocation protein rft1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/433 (78%), Positives = 378/433 (87%), Gaps = 6/433 (1%)

Query: 1   MSRAPV------DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFH 54
           MS A V          + SRTFKYLLATQFLSRGIPF+FNSWI+RHLTE DYAIYAVQFH
Sbjct: 1   MSNASVVQPQAESSDANFSRTFKYLLATQFLSRGIPFIFNSWIIRHLTEQDYAIYAVQFH 60

Query: 55  LFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVL 114
           LFVTCVLFLSREGFRRACMRA++K DG S E  A KLLKVAW+TLPLGI IT  AC FV 
Sbjct: 61  LFVTCVLFLSREGFRRACMRAEVKSDGTSSEAYALKLLKVAWMTLPLGIVITFAACIFVF 120

Query: 115 WWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMC 174
           WWQGL+ ++ YAQAI IN  AC+LELLAEPLYILSQNLLLL+LRL+ ETVAT  RC TM 
Sbjct: 121 WWQGLNLNDSYAQAILINACACILELLAEPLYILSQNLLLLKLRLMAETVATLLRCLTMY 180

Query: 175 ILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQL 234
           ILIV+Q  MEK IVFALSQ AY A LF+GYW YFLLF +F +S+LFPFRLG +M YDKQL
Sbjct: 181 ILIVRQPGMEKDIVFALSQTAYGACLFIGYWSYFLLFCSFGSSELFPFRLGTIMDYDKQL 240

Query: 235 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSY 294
            NMC LFT QSFRKL+LQEGEK+VLVWLDTPYNQAVYGLVDKLGSLVVR+VFLPFEESSY
Sbjct: 241 CNMCMLFTLQSFRKLVLQEGEKMVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSY 300

Query: 295 ATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE 354
           ATFARSASGQ+P+K +K+G  L EALKLVLLIGLVFMAFGPSYSYSL+RLLYG KWSDGE
Sbjct: 301 ATFARSASGQHPEKRRKLGGYLTEALKLVLLIGLVFMAFGPSYSYSLIRLLYGNKWSDGE 360

Query: 355 ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAG 414
           ASTAL+YYCLY++VLAMNGTSEAFLHAVATE QLKRSNDSLLVFS+IY+V+NV+LI+SAG
Sbjct: 361 ASTALQYYCLYIIVLAMNGTSEAFLHAVATEKQLKRSNDSLLVFSIIYVVLNVLLIRSAG 420

Query: 415 SVGLILANSLSIL 427
           ++GLILANSLSIL
Sbjct: 421 AIGLILANSLSIL 433

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356531685|ref|XP_003534407.1| PREDICTED: protein RFT1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356544271|ref|XP_003540577.1| PREDICTED: LOW QUALITY PROTEIN: protein RFT1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|449458359|ref|XP_004146915.1| PREDICTED: protein RFT1 homolog [Cucumis sativus] gi|449520289|ref|XP_004167166.1| PREDICTED: protein RFT1 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|334187490|ref|NP_196380.5| lipid transporter [Arabidopsis thaliana] gi|332003804|gb|AED91187.1| lipid transporter [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224138472|ref|XP_002326611.1| predicted protein [Populus trichocarpa] gi|222833933|gb|EEE72410.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|38260621|gb|AAR15439.1| nuclear division RFT1-like protein [Sisymbrium irio] Back     alignment and taxonomy information
>gi|38260690|gb|AAR15504.1| nuclear division RFT1-like protein [Arabidopsis arenosa] Back     alignment and taxonomy information
>gi|38260636|gb|AAR15453.1| nuclear division RFT1-like protein [Arabidopsis arenosa] Back     alignment and taxonomy information
>gi|297806793|ref|XP_002871280.1| hypothetical protein ARALYDRAFT_325378 [Arabidopsis lyrata subsp. lyrata] gi|297317117|gb|EFH47539.1| hypothetical protein ARALYDRAFT_325378 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
DICTYBASE|DDB_G0288491540 rft1 "RFT1 family protein" [Di 0.598 0.512 0.322 1.5e-58
ZFIN|ZDB-GENE-110411-126540 rft1 "RFT1 homolog (S. cerevis 0.881 0.755 0.309 2.7e-45
UNIPROTKB|E1BNC6541 RFT1 "Uncharacterized protein" 0.887 0.759 0.303 5.6e-45
UNIPROTKB|E2RQ01541 RFT1 "Uncharacterized protein" 0.850 0.728 0.310 2.4e-44
UNIPROTKB|Q96AA3541 RFT1 "Protein RFT1 homolog" [H 0.855 0.731 0.311 5e-44
RGD|1562654541 Rft1 "RFT1 homolog (S. cerevis 0.853 0.730 0.308 1e-43
UNIPROTKB|F1P5L5535 RFT1 "Uncharacterized protein" 0.848 0.734 0.319 1.7e-43
MGI|MGI:3607791541 Rft1 "RFT1 homolog (S. cerevis 0.412 0.353 0.373 2.1e-43
POMBASE|SPBC887.19527 rft1 "Man5GlcNac2-PP-Dol trans 0.889 0.781 0.274 3.6e-34
FB|FBgn0027564556 CG3149 [Drosophila melanogaste 0.434 0.361 0.344 5.4e-34
DICTYBASE|DDB_G0288491 rft1 "RFT1 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 361 (132.1 bits), Expect = 1.5e-58, Sum P(2) = 1.5e-58
 Identities = 96/298 (32%), Positives = 154/298 (51%)

Query:    18 YLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADI 77
             YL+  Q +SR   F+ N+ ++  + ++ + + A+Q+ L  + +LFLSRE  RRAC R +I
Sbjct:    20 YLIGLQIISRLFTFIINTLVIVGVDDSIFGVSAIQYQLLSSIILFLSREAIRRACTRVNI 79

Query:    78 KCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWW---QGLSYSNPYAQAIFINGF 134
               D  + + N   ++ ++WL LP+GI ++I    F L+    + L   N Y   + +   
Sbjct:    80 T-DKLNNDNNLKSVINLSWLVLPIGIGLSIIFENFFLYTSTKETLEILN-YHYGLRLFTI 137

Query:   135 ACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGIV-FALSQ 193
             + +LELL+EP+YIL+QN         VE  A F + F+    IV    +  G++ F  +Q
Sbjct:   138 SSILELLSEPMYILAQNLLLFKIRTTVEGFALFFKTFSTYYFIVI---LNMGLIGFGYAQ 194

Query:   194 VAYAASXXXXXXXXXXXXXXX--KTSDLFPF--------RLGNMMS--YDKQLANMCTLF 241
             + Y+ +                 K  D   F        +L    S   D+ L  +  L+
Sbjct:   195 ILYSLTLVIGYFGYFLINIINNNKNKDNKEFSNCFKSIDQLFPKFSTRIDRNLIKLSLLY 254

Query:   242 TFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299
             T+QS  KLLLQEGEK VL + +T   QA++ +V  LGSL+VR +FLP EE+ +  F +
Sbjct:   255 TWQSIYKLLLQEGEKFVLFFSETNQGQAIFAIVSNLGSLIVRFLFLPIEETCFLMFPK 312
GO:0016021 "integral to membrane" evidence=IEA
GO:0006869 "lipid transport" evidence=IEA
GO:0005319 "lipid transporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
ZFIN|ZDB-GENE-110411-126 rft1 "RFT1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BNC6 RFT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQ01 RFT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q96AA3 RFT1 "Protein RFT1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1562654 Rft1 "RFT1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P5L5 RFT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:3607791 Rft1 "RFT1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
POMBASE|SPBC887.19 rft1 "Man5GlcNac2-PP-Dol translocation protein Rft1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
FB|FBgn0027564 CG3149 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.29.62.1
hypothetical protein (474 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
cd13130441 cd13130, MATE_rft1, Rft1-like subfamily of the mul 0.0
pfam04506533 pfam04506, Rft-1, Rft protein 4e-59
COG2244480 COG2244, RfbX, Membrane protein involved in the ex 2e-08
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 1e-04
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 0.001
>gnl|CDD|240535 cd13130, MATE_rft1, Rft1-like subfamily of the multidrug and toxic compound extrusion family (MATE) Back     alignment and domain information 
 Score =  544 bits (1404), Expect = 0.0
 Identities = 263/427 (61%), Positives = 307/427 (71%), Gaps = 10/427 (2%)

Query: 11  SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR 70
           S SR FKYL+A Q  SR I FVFN  ++R LT   +  Y++QF LF T VLFLSREGFRR
Sbjct: 1   SSSRGFKYLIAAQLFSRIITFVFNQLLLRFLTPRYFG-YSIQFELFQTTVLFLSREGFRR 59

Query: 71  ACMRADIKCDG-----ASREENAAKLLKVAWLTLPLGIFITIGACFFVLW-WQGLSYSNP 124
           AC+R +    G         E  AK+LK+AW  +P GI  TI  C  VLW  + LSYS P
Sbjct: 60  ACLRINSSGAGITTESNKSGELQAKVLKIAWAIVPGGIISTILGCLVVLWASESLSYSPP 119

Query: 125 YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEME 184
           YA+AI I GFAC+LELL+EPLYILSQNLL  RLR +VET AT  RC T  ILIV     E
Sbjct: 120 YAKAILIYGFACILELLSEPLYILSQNLLKFRLRAIVETAATLVRCLTTFILIVLGTGKE 179

Query: 185 -KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTF 243
            K +VFAL Q+AY   LF GYW YFL     K S LFP R  N+M +DK    MC LFT 
Sbjct: 180 PKVLVFALGQLAYGVCLFFGYWYYFLQCFVSKKSSLFPLRNSNLMFFDKPTLRMCGLFTI 239

Query: 244 QSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASG 303
           QSF K LL EG+K+VLVW DTPYNQ VY LVD  GSLVVR+VFLPFEESSY TFAR AS 
Sbjct: 240 QSFFKHLLTEGDKIVLVWFDTPYNQGVYALVDNYGSLVVRIVFLPFEESSYTTFARLASE 299

Query: 304 QYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYC 363
           + P+  KK+GNSL EALKL   +GLV +AFGPSYSYSL+RLLYG++WSDGEA  AL  YC
Sbjct: 300 KNPKALKKLGNSLTEALKLYSYVGLVAIAFGPSYSYSLLRLLYGERWSDGEAPDALGVYC 359

Query: 364 LYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILA 421
           LY+  LA+NGTSEAFLH+VATE+QL+R N  LLVFSVIY+++NV+LI+  S G+VGLILA
Sbjct: 360 LYIPFLALNGTSEAFLHSVATEEQLQRQNVWLLVFSVIYLILNVLLIRWFSLGAVGLILA 419

Query: 422 NSLSILL 428
           N L++LL
Sbjct: 420 NILNMLL 426

This eukaryotic family may function as a transporter, shuttling phospholipids, lipopolysaccharides or oligosaccharides from cytoplasmic to the lumenal side of the endoplasmic reticulum. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. Length = 441
>gnl|CDD|218119 pfam04506, Rft-1, Rft protein Back     alignment and domain information
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 463
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 100.0
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 100.0
PRK10459492 colanic acid exporter; Provisional 100.0
COG2244480 RfbX Membrane protein involved in the export of O- 99.98
PRK15099416 O-antigen translocase; Provisional 99.97
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.97
TIGR01695502 mviN integral membrane protein MviN. This model re 99.96
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.89
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.79
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.77
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.69
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.67
PRK01766456 multidrug efflux protein; Reviewed 99.67
PRK00187464 multidrug efflux protein NorA; Provisional 99.66
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.65
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.54
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 99.53
PRK10189478 MATE family multidrug exporter; Provisional 99.52
PRK01766 456 multidrug efflux protein; Reviewed 99.12
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.12
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.06
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.04
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 98.99
PRK10189 478 MATE family multidrug exporter; Provisional 98.95
PRK00187 464 multidrug efflux protein NorA; Provisional 98.84
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 98.51
TIGR01695 502 mviN integral membrane protein MviN. This model re 98.44
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 98.17
PRK15099 416 O-antigen translocase; Provisional 98.02
PF03023 451 MVIN: MviN-like protein; InterPro: IPR004268 This 97.78
COG0728 518 MviN Uncharacterized membrane protein, putative vi 97.44
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.4
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.24
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 96.92
PRK10459492 colanic acid exporter; Provisional 96.71
COG2244480 RfbX Membrane protein involved in the export of O- 96.28
KOG1347 473 consensus Uncharacterized membrane protein, predic 95.14
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 94.84
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-64  Score=488.56  Aligned_cols=427  Identities=40%  Similarity=0.627  Sum_probs=383.9

Q ss_pred             CCCcchhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCcc
Q 012441            4 APVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGAS   83 (463)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~q~~~~~i~fi~~~iLaRlL~Pe~fGl~a~~l~~~~~~~~~ls~~G~~~a~~r~~~~~~~~~   83 (463)
                      .++++-.+..+|+..++.+|+..|+++|+.|.++.|.++||.+|++++.+++++.+++|++||.+|.|.+|..+...|  
T Consensus         2 ~s~~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~~d--   79 (530)
T KOG2864|consen    2 KSDSVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEPAD--   79 (530)
T ss_pred             chHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCc--
Confidence            456677888899999999999999999999999999999999999999999999999999999999999998776643  


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----cCCchhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHH
Q 012441           84 REENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLS----YSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRL  159 (463)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~  159 (463)
                         ++.+..|..|++.+++...++.++.++.++....    ..++|..++.++++++++|.+.||.+...|-.++++.++
T Consensus        80 ---~~te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~  156 (530)
T KOG2864|consen   80 ---TWTEFINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRA  156 (530)
T ss_pred             ---cHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence               5677899999999999988887765544443221    345567899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH-HHHHHHhhc-------ccccCcccccccCC--ccc
Q 012441          160 VVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLG-YWGYFLLFG-------AFKTSDLFPFRLGN--MMS  229 (463)
Q Consensus       160 ~~~~~~~~~~~~~~i~l~~~~~~~~~~~a~~~~~l~~~~~~~~~-~~~~~~~~~-------~~~~~~~~p~~~~~--~~~  229 (463)
                      ..|..+.++|+.+..+..+.+++.+++.+++++|++++++.+++ +|.|+..++       ..+..+.+|+..++  ...
T Consensus       157 i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~f  236 (530)
T KOG2864|consen  157 IAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIF  236 (530)
T ss_pred             HHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccc
Confidence            99999999999998888788888789999999999999987764 444444333       23345677876544  556


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhchhheecc--cCCccchhHHHHhhhhhHHHHHHHHhhHHhhHHHHHHHhcCCCch
Q 012441          230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWL--DTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQ  307 (463)
Q Consensus       230 ~~k~ll~f~~~l~~~sl~~~l~t~~D~liig~~--~~~~~~G~Y~~A~~l~sl~~~~v~~pi~~~~~p~fs~l~~~~~~~  307 (463)
                      +++|..+..+.++.|+++|+++|++||+++...  ++..+||.|++++|+||+++|.+++|+||.++-.|+++.+++++|
T Consensus       237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe  316 (530)
T KOG2864|consen  237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE  316 (530)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence            789999999999999999999999999999955  466799999999999999999999999999999999999888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhcChhH
Q 012441          308 KSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQ  387 (463)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~lv~ll~G~kw~~a~~~~il~~l~~~~~~~~~ng~~~~~~~a~~~~~~  387 (463)
                      +.+++.+.+...+|++..+|+.++.||++||+.++.++.|+||.+++.+.++|+||.|+|++++||++|+|.+|+++.+|
T Consensus       317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q  396 (530)
T KOG2864|consen  317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ  396 (530)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence            88999999999999999999999999999999999999999999988788999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhh
Q 012441          388 LKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLSILLHCHCQPR  435 (463)
Q Consensus       388 ~~~~~~~~~~~~ii~i~~~~~li~~~G~~G~~~a~~i~~~~r~~~~~~  435 (463)
                      +.++|+.|++.++++++++++++.++|..|.+.||++||.+||.++++
T Consensus       397 i~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~  444 (530)
T KOG2864|consen  397 IDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLR  444 (530)
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999954

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.94
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.05
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=99.94  E-value=4.3e-24  Score=220.04  Aligned_cols=415  Identities=13%  Similarity=0.058  Sum_probs=285.3

Q ss_pred             chhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchhh
Q 012441            8 HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREEN   87 (463)
Q Consensus         8 ~~~~~~~~~~~~~~~q~~~~~i~fi~~~iLaRlL~Pe~fGl~a~~l~~~~~~~~~ls~~G~~~a~~r~~~~~~~~~~~~~   87 (463)
                      ..+++.+.+.+.+++++.+.+.+++-+.++.| +|||++|.++++..+.. ....+ ..|+..+..+...+...++|+++
T Consensus        10 ~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~-~~~~~-~~g~~~~~~~~is~~~g~~~~~~   86 (460)
T 3mkt_A           10 EASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWL-PSILF-GVGLLMALVPVVAQLNGAGRQHK   86 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHH-HHHHH-HHHHHHHHGGGCTTTTSSSSTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHcCCChhH
Confidence            45778899999999999999999999999999 89999999999776643 32333 37888888766554322222223


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q 012441           88 AAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV  161 (463)
Q Consensus        88 ~~~~~~~~~-~~~~~g~~~~~i~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~  161 (463)
                      .++...... +....++.++++ .+...........++.     ...+.+++...++..+.......+|.+.+++.....
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  165 (460)
T 3mkt_A           87 IPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI  165 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            344443333 444445544433 2221111122122332     134556666666766666666677888888888888


Q ss_pred             HHHHHHHhHHHHHHHHhh-cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccccCCcccccHHHHHHHH
Q 012441          162 ETVATFSRCFTMCILIVK-QY-EMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCT  239 (463)
Q Consensus       162 ~~~~~~~~~~~~i~l~~~-~~-~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~ll~f~~  239 (463)
                      ...+.+.+.+....++.. .. +.+++.+.+++..+...+..+..+.+..++++....+..+.....+....|++++++.
T Consensus       166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  245 (460)
T 3mkt_A          166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF  245 (460)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence            888888887777665532 10 1144444444444444333222222222111111001111100112233479999999


Q ss_pred             HHHHHHHHHHHHHhhchhheecccCCccchhHHHHhhhhhHHHHHHHHhhHHhhHHHHHHHhcCCCchhHHHHHHHHHHH
Q 012441          240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA  319 (463)
Q Consensus       240 ~l~~~sl~~~l~t~~D~liig~~~~~~~~G~Y~~A~~l~sl~~~~v~~pi~~~~~p~fs~l~~~~~~~~~~~~~~~~~~~  319 (463)
                      |.+.+++...+..+.|+.+++++ |++++|.|++++++.+++. .+..++.++..|..++...++|+|+.+   +.+++.
T Consensus       246 p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~~~~~---~~~~~~  320 (460)
T 3mkt_A          246 PVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTKGAA---IAANVG  320 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCCTTT---THHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHH---HHHHHH
Confidence            99999999999999999999999 9999999999999998776 677789999999999998665555444   357778


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhcChhHHHHhhhHHHHHH
Q 012441          320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFS  399 (463)
Q Consensus       320 ~~~~~~l~~~~~~~~~~~a~~lv~ll~G~kw~~a~~~~il~~l~~~~~~~~~ng~~~~~~~a~~~~~~~~~~~~~~~~~~  399 (463)
                      .+....+++|...+....+++++.++.+|+.......++++++++..++.+++......+.+.++++.....+   .+..
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~---~~~~  397 (460)
T 3mkt_A          321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRT---FISY  397 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHH---HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH---HHHH
Confidence            8888888888888878899999998887764322235799999999999999988888888888886653333   3444


Q ss_pred             -HHHHHHHHHHHHh-------hchHHHHHHHHHHHHHHHHHhh
Q 012441          400 -VIYIVMNVILIQS-------AGSVGLILANSLSILLHCHCQP  434 (463)
Q Consensus       400 -ii~i~~~~~li~~-------~G~~G~~~a~~i~~~~r~~~~~  434 (463)
                       ++++++++++++.       +|..|+.+|..++..++.+...
T Consensus       398 ~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~  440 (460)
T 3mkt_A          398 WVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLG  440 (460)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHH
Confidence             7889999999998       9999999999999988877664
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00