Citrus Sinensis ID: 012449

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
MVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHLKLENGESKNEKSENTEYVLVPQQSDNEQSVPNDKYPAPSTPQLKQGGRLLDDIDCQDNTNFSTEKESAEQDGESKFVETTCGNSIAEGTLQEDKPQRPRETIVKEEHDPTNGSKTECNMLPLPYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRKWPHARDQMLRNYYPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDNSYAMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPRINGSHPC
cccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccccccccccc
ccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHccccccccccccccccccEEEEcccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccccccccccc
mvmnqlfdnnFQLGAVEFLrkplsedklRNLWQHVVHKAFNaggsalsdslkpVKESVVSMLHLKLengeskneksenteyvlvpqqsdneqsvpndkypapstpqlkqggrllddidcqdntnfstekesaeqdgeskfvettcgnsiaegtlqedkpqrpretivkeehdptngsktecnmlplpyekdnlkgsncvienpskasglqnscgnkanrkkmkvdwtpeLHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHrrhilpkeddrkwpharDQMLRnyyphkpimafppyhsnhlvptgpvypvwgapsnhlaavqmwappgyppwqqaeswnwkpypgmpadawgcpvmplpngpyssfpqgasgyhnsgvddnsyampqnsvdlhpaEEVIDKVVKEAiskpwlplplglkppsaDSVLAELSRqgistippringshpc
mvmnqlfdnnfqLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAggsalsdslKPVKESVVSMLHLKlengeskneksenTEYVLVPQQsdneqsvpndkyPAPSTPQLKQGGRLLDDIDCQDNTNFStekesaeqdgeskfVETTCGNsiaegtlqedkpqrpretivkeehdptngsktecnMLPLPYEKDNLKGSNCVIEnpskasglqnscgnkANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHrrhilpkeddrkwphaRDQMLRNYYPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDNSYAMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSrqgistippringshpc
MVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHlklengeskneksenteYVLVPQQSDNEQSVPNDKYPAPSTPQLKQGGRLLDDIDCQDNTNFSTEKESAEQDGESKFVETTCGNSIAEGTLQEDKPQRPRETIVKEEHDPTNGSKTECNMLPLPYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRKWPHARDQMLRNYYPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDNSYAMPQNSVDLHPAEEVIDKVVKEAISkpwlplplglkppSADSVLAELSRQGISTIPPRINGSHPC
*****LFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG***********************************************************************************************************************************************************************************VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILP*****KWPHARDQMLRNYYPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPL**************************************EVIDKVVKEAISKPWLPLPLG*******************************
****Q**DNNFQLGAVEFLRKPLSEDKLRNLWQHVV*******************ESVV*********************************************************************************************************************************************************************DWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYR*******************************************************************************************************************************************VIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGIS************
MVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHLKLEN**********TEYVLVPQQ**************PSTPQLKQGGRLLDDIDCQDNTNF***************VETTCGNSIAEGTLQEDKPQRPRETIVKEEHDPTNGSKTECNMLPLPYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRKWPHARDQMLRNYYPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDNSYAMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPRINGSHPC
*VMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG***********************************TEYVLVPQ**********DKYPAPSTPQLKQGGRLLDDIDCQDNTNF******************TCG*SIA*********************************************************************KKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKED********************IMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDNSYAMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPP********
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MVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHLKLENGESKNEKSENTEYVLVPQQSDNEQSVPNDKYPAPSTPQLKQGGRLLDDIDCQDNTNFSTEKESAEQDGESKFVETTCGNSIAEGTLQEDKPQRPRETIVKEEHDPTNGSKTECNMLPLPYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRKWPHARDQMLRNYYPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDNSYAMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPRINGSHPC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query463 2.2.26 [Sep-21-2011]
Q6LA43535 Two-component response re yes no 0.844 0.730 0.496 7e-87
Q9FFH0386 Transcription activator G no no 0.440 0.528 0.413 5e-31
Q9SIV3420 Transcription activator G no no 0.531 0.585 0.377 1e-29
Q5Z5I4455 Probable transcription fa yes no 0.492 0.501 0.357 6e-25
Q5NAN5539 Probable transcription fa no no 0.149 0.128 0.695 1e-24
Q9FGT7 635 Two-component response re no no 0.259 0.188 0.382 6e-18
Q940D0 690 Two-component response re no no 0.140 0.094 0.6 9e-16
Q9ZWJ9 664 Two-component response re no no 0.129 0.090 0.633 2e-15
P62598 596 Two-component response re no no 0.131 0.102 0.622 2e-15
Q8L9Y3382 Two-component response re no no 0.136 0.164 0.571 4e-15
>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2 Back     alignment and function desciption
 Score =  321 bits (823), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 238/479 (49%), Positives = 291/479 (60%), Gaps = 88/479 (18%)

Query: 11  FQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHLKLENGE 70
             LGAVEFL+KPLS +KL+N+WQHVVHKAFN GGS +S SLKPVKESVVSMLHL+     
Sbjct: 114 IALGAVEFLQKPLSPEKLKNIWQHVVHKAFNDGGSNVSISLKPVKESVVSMLHLE----- 168

Query: 71  SKNEKSENTEYVLVPQQSDNEQSVPNDKYPAPSTPQLKQGGRLLDDIDCQDNTNFS---- 126
                   T+  +             +K PAPSTPQLKQ  RLLD  DCQ+N NFS    
Sbjct: 169 --------TDMTI------------EEKDPAPSTPQLKQDSRLLDG-DCQENINFSMENV 207

Query: 127 ---TEKESAE--QD-GESKFVETTCGNSIAEGTLQEDKP--QRPRETIVKEEHDPTNGSK 178
              TEK++ E  QD GESK V+TT         L +DK   +  R    KEE   T    
Sbjct: 208 NSSTEKDNMEDHQDIGESKSVDTT------NRKLDDDKVVVKEERGDSEKEEEGETGDLI 261

Query: 179 TE-CNMLPLPYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQA 237
           +E  + + +  ++D  K  N       K+SG++N  GNK +RKK  VDWTPELHKKFVQA
Sbjct: 262 SEKTDSVDIHKKEDETKPIN-------KSSGIKNVSGNKTSRKK--VDWTPELHKKFVQA 312

Query: 238 VEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKED-DRKWPHARDQML 296
           VEQLGVDQAIPSRILELMKV  LTRHNVASHLQK+R HR++ILPK+D + +W  +R+   
Sbjct: 313 VEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKFRQHRKNILPKDDHNHRWIQSRENHR 372

Query: 297 ---RNY----YPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQ 349
              RNY      H+P+MA+P +    + P G + P+W  P   +         G PP   
Sbjct: 373 PNQRNYNVFQQQHRPVMAYPVWGLPGVYPPGAIPPLWPPPLQSI---------GQPP--- 420

Query: 350 AESWNWK-PYPGMPADAWGCPVMPLPNGPY---SSFPQGASGYHNSGVDDNSYAMPQNSV 405
              W+WK PYP +  +AWGCPV P   G Y   S+   G   Y N G +     MP +  
Sbjct: 421 --PWHWKPPYPTVSGNAWGCPVGPPVTGSYITPSNTTAGGFQYPN-GAETGFKIMPAS-- 475

Query: 406 DLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPR---INGSH 461
              P EE++D+VVKEAISKPWLPLPLGLKPPSA+SVLAEL+RQGIS +P     INGSH
Sbjct: 476 --QPDEEMLDQVVKEAISKPWLPLPLGLKPPSAESVLAELTRQGISAVPSSSCLINGSH 532
Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIV3|GLK1_ARATH Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2 SV=2 Back     alignment and function description
>sp|Q5Z5I4|GLK1_ORYSJ Probable transcription factor GLK1 OS=Oryza sativa subsp. japonica GN=GLK1 PE=2 SV=1 Back     alignment and function description
>sp|Q5NAN5|GLK2_ORYSJ Probable transcription factor GLK2 OS=Oryza sativa subsp. japonica GN=GLK2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2 Back     alignment and function description
>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2 Back     alignment and function description
>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1 Back     alignment and function description
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2 Back     alignment and function description
>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana GN=ARR14 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
147794999563 hypothetical protein VITISV_001044 [Viti 0.993 0.817 0.698 0.0
225427316557 PREDICTED: two-component response regula 0.971 0.807 0.704 1e-180
224126555549 predicted protein [Populus trichocarpa] 0.954 0.805 0.655 1e-164
419193836560 APRR2-like protein [Solanum lycopersicum 0.967 0.8 0.584 1e-142
449513573559 PREDICTED: LOW QUALITY PROTEIN: two-comp 0.965 0.799 0.628 1e-142
449464910560 PREDICTED: two-component response regula 0.965 0.798 0.626 1e-140
356540587 570 PREDICTED: two-component response regula 0.963 0.782 0.604 1e-140
356565422 576 PREDICTED: two-component response regula 0.961 0.772 0.602 1e-136
357482307543 Two-component response regulator-like pr 0.935 0.797 0.575 1e-136
356495556533 PREDICTED: two-component response regula 0.892 0.774 0.608 1e-136
>gi|147794999|emb|CAN71929.1| hypothetical protein VITISV_001044 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/464 (69%), Positives = 364/464 (78%), Gaps = 4/464 (0%)

Query: 1   MVMNQLFDNN-FQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVV 59
           + +  +FDN  FQLGAVEFLRKPLSEDKLRN+WQHVVHKAFNAGGS L +SLKPVKESV 
Sbjct: 101 ISLMDVFDNQMFQLGAVEFLRKPLSEDKLRNIWQHVVHKAFNAGGSVLPESLKPVKESVA 160

Query: 60  SMLHLKLENGESKNEKSENTEYVLVPQQSDNEQSVPNDKYPAPSTPQLKQGGRLLDDIDC 119
           SML L++EN E +NE S  T  V    ++D+ QS   DKYPAPSTPQLKQGGR LDD DC
Sbjct: 161 SMLQLQMENEEPRNESSAETLNVSNVHENDHMQSAGTDKYPAPSTPQLKQGGRSLDDGDC 220

Query: 120 QDNTNFSTEKESAEQDGESKFVETTCGNSIAEGTLQEDKPQRPRETIVKEEHDPTNGSKT 179
            D TN STEKES EQDGESK VETTCG S+AE T Q   PQ   E+++KEE D  +G K+
Sbjct: 221 LDQTNCSTEKESGEQDGESKSVETTCGTSVAEVTAQVSPPQGLGESVIKEEDDSADGCKS 280

Query: 180 ECNMLPLPYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVE 239
           E NM P P  KD+L        NP KASG+ + CG +ANRKKMKVDW PELHKKFVQAVE
Sbjct: 281 ESNMSPHPQNKDSLSEFGGDARNPRKASGVHSPCGTRANRKKMKVDWXPELHKKFVQAVE 340

Query: 240 QLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRKWPHARDQMLRNY 299
           QLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDR+WPH RD M RNY
Sbjct: 341 QLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRRWPHQRDPMQRNY 400

Query: 300 YPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYP 359
           YP KP+MAFPPYHS+H +P   +YPVWG PS+H A  QMW+ PGY  WQ AESW WKPYP
Sbjct: 401 YPQKPVMAFPPYHSSHTLPAAQLYPVWGQPSSHPA--QMWSTPGYHTWQPAESWIWKPYP 458

Query: 360 GMPADAWGCPVMPLPNGPYSSFPQGASGY-HNSGVDDNSYAMPQNSVDLHPAEEVIDKVV 418
           GM ADAWGCPVM   + P SSFPQ  SG+ HN+G    +  +PQ+ +DL+PAEEVID+VV
Sbjct: 459 GMNADAWGCPVMTPTHTPCSSFPQNPSGFDHNNGSGIYNTGIPQSPIDLYPAEEVIDRVV 518

Query: 419 KEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPRINGSHP 462
           KEAISKPW+PLPLGLKPP+ +SVLAELSRQGISTIPP IN   P
Sbjct: 519 KEAISKPWMPLPLGLKPPATESVLAELSRQGISTIPPHINTPRP 562

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225427316|ref|XP_002279150.1| PREDICTED: two-component response regulator-like APRR2 [Vitis vinifera] gi|297742160|emb|CBI33947.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224126555|ref|XP_002329583.1| predicted protein [Populus trichocarpa] gi|222870292|gb|EEF07423.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|419193836|gb|AFX68729.1| APRR2-like protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|449513573|ref|XP_004164360.1| PREDICTED: LOW QUALITY PROTEIN: two-component response regulator-like APRR2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449464910|ref|XP_004150172.1| PREDICTED: two-component response regulator-like APRR2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356540587|ref|XP_003538769.1| PREDICTED: two-component response regulator-like APRR2-like [Glycine max] Back     alignment and taxonomy information
>gi|356565422|ref|XP_003550939.1| PREDICTED: two-component response regulator-like APRR2-like [Glycine max] Back     alignment and taxonomy information
>gi|357482307|ref|XP_003611439.1| Two-component response regulator-like protein [Medicago truncatula] gi|355512774|gb|AES94397.1| Two-component response regulator-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356495556|ref|XP_003516642.1| PREDICTED: two-component response regulator-like APRR2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
TAIR|locus:2141020535 APRR2 [Arabidopsis thaliana (t 0.712 0.616 0.463 2.4e-87
TAIR|locus:2167639386 GLK2 "AT5G44190" [Arabidopsis 0.488 0.585 0.418 3.9e-37
UNIPROTKB|Q5Z5I4455 GLK1 "Probable transcription f 0.423 0.430 0.376 8.9e-27
TAIR|locus:2130095 664 RR2 "response regulator 2" [Ar 0.140 0.097 0.584 3.4e-17
TAIR|locus:2093668 690 RR1 "response regulator 1" [Ar 0.136 0.091 0.619 3.6e-17
TAIR|locus:2065398382 RR14 "response regulator 14" [ 0.133 0.162 0.580 3.6e-17
TAIR|locus:2148348298 BOA "AT5G59570" [Arabidopsis t 0.200 0.312 0.44 9e-17
TAIR|locus:2040194 596 RR12 "response regulator 12" [ 0.131 0.102 0.622 1.1e-16
TAIR|locus:2116587 552 RR10 "response regulator 10" [ 0.276 0.231 0.363 3.9e-16
TAIR|locus:2058445248 MYBC1 "AT2G40970" [Arabidopsis 0.146 0.274 0.542 4.9e-15
TAIR|locus:2141020 APRR2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 676 (243.0 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
 Identities = 182/393 (46%), Positives = 228/393 (58%)

Query:    97 DKYPAPSTPQLKQGGRLLDDIDCQDNTNFS-------TEKESAE--QD-GESKFVETTCG 146
             +K PAPSTPQLKQ  RLLD  DCQ+N NFS       TEK++ E  QD GESK V+TT  
Sbjct:   175 EKDPAPSTPQLKQDSRLLDG-DCQENINFSMENVNSSTEKDNMEDHQDIGESKSVDTT-- 231

Query:   147 NSIAEGTLQEDKP--QRPRETIVKEEHDPTNGSKTE-CNMLPLPYEKDNLKGSNCVIENP 203
                    L +DK   +  R    KEE   T    +E  + + +  ++D  K  N      
Sbjct:   232 ----NRKLDDDKVVVKEERGDSEKEEEGETGDLISEKTDSVDIHKKEDETKPIN------ 281

Query:   204 SKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRH 263
              K+SG++N  GNK +RKK  VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKV  LTRH
Sbjct:   282 -KSSGIKNVSGNKTSRKK--VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRH 338

Query:   264 NVASHLQKYRMHRRHILPKED-DRKWPHARDQML---RNY----YPHKPIMAFPPYHSNH 315
             NVASHLQK+R HR++ILPK+D + +W  +R+      RNY      H+P+MA+P +    
Sbjct:   339 NVASHLQKFRQHRKNILPKDDHNHRWIQSRENHRPNQRNYNVFQQQHRPVMAYPVWGLPG 398

Query:   316 LVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKP-YPGMPADAWGCPVMPLP 374
             + P G + P+W  P   L ++      G PP      W+WKP YP +  +AWGCPV P  
Sbjct:   399 VYPPGAIPPLWPPP---LQSI------GQPP-----PWHWKPPYPTVSGNAWGCPVGPPV 444

Query:   375 NGPY---SSFPQGASGYHNSGVDDNSYAMPQNSVDLHPAEEVIDKVVKEAISXXXXXXXX 431
              G Y   S+   G   Y N G +     MP +     P EE++D+VVKEAIS        
Sbjct:   445 TGSYITPSNTTAGGFQYPN-GAETGFKIMPASQ----PDEEMLDQVVKEAISKPWLPLPL 499

Query:   432 XXXXXSADSVLAELSRQGISTIPPR---INGSH 461
                  SA+SVLAEL+RQGIS +P     INGSH
Sbjct:   500 GLKPPSAESVLAELTRQGISAVPSSSCLINGSH 532
GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS
GO:0000160 "phosphorelay signal transduction system" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0007623 "circadian rhythm" evidence=RCA;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA
TAIR|locus:2167639 GLK2 "AT5G44190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5Z5I4 GLK1 "Probable transcription factor GLK1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2130095 RR2 "response regulator 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093668 RR1 "response regulator 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065398 RR14 "response regulator 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148348 BOA "AT5G59570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040194 RR12 "response regulator 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116587 RR10 "response regulator 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058445 MYBC1 "AT2G40970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015824001
SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (557 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
PLN03162526 PLN03162, PLN03162, golden-2 like transcription fa 3e-46
TIGR0155757 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai 4e-22
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 2e-06
>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional Back     alignment and domain information 
 Score =  167 bits (424), Expect = 3e-46
 Identities = 114/299 (38%), Positives = 151/299 (50%), Gaps = 55/299 (18%)

Query: 212 SCGNKA-NRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQ 270
           SC N A  +KK KVDWTPELH++FV AVEQLGV++A PSRILELM V+ LTRHN+ASHLQ
Sbjct: 225 SCKNAAPGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQ 284

Query: 271 KYRMHRRHILPKE-DDRKWPHAR--DQM------LRNYYP-----HKP--------IMAF 308
           KYR HRRH+  +E +   W H R   Q        R+  P     H P         MA 
Sbjct: 285 KYRSHRRHLAAREAEAASWTHRRAYTQAPWPRSSRRDGLPYLVPIHTPHIQPRPSMAMAM 344

Query: 309 PPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGY--PPWQQAESWNWKPYPGMPADAW 366
            P       P      VWG P+   + V MW  P    P + QA   ++  +P    DA+
Sbjct: 345 QPQLQTPHHPISTPLKVWGYPTVDHSNVHMWQQPAVATPSYWQAADGSYWQHPATGYDAF 404

Query: 367 ---GCPVMPLPNGPYSS-----------FPQGASGYHNSGVDDNSYAMPQN--------- 403
               C   P+   P  +           FP  +  Y +  +  + Y   Q+         
Sbjct: 405 SARACYPHPMQRVPLGTTHAGLPIMAPGFPDESCYYGDDMLAASMYLCNQSYDSEIGRAA 464

Query: 404 -------SVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPP 455
                   ++ H ++EV+D  + EA++ PW P PLGLKPPS + V+AEL RQGI+T+PP
Sbjct: 465 GVAACSKPIETHLSKEVLDAAIGEALANPWTPPPLGLKPPSMEGVIAELQRQGINTVPP 523

Length = 526
>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 463
PLN03162526 golden-2 like transcription factor; Provisional 100.0
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 99.82
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 97.28
PLN03029222 type-a response regulator protein; Provisional 94.53
COG4565224 CitB Response regulator of citrate/malate metaboli 94.08
COG4566202 TtrR Response regulator [Signal transduction mecha 93.38
COG0745229 OmpR Response regulators consisting of a CheY-like 92.97
COG4753475 Response regulator containing CheY-like receiver d 91.11
smart0042668 TEA TEA domain. 90.63
COG4567182 Response regulator consisting of a CheY-like recei 89.88
PRK10766221 DNA-binding transcriptional regulator TorR; Provis 88.64
PRK10643222 DNA-binding transcriptional regulator BasR; Provis 88.54
COG2204464 AtoC Response regulator containing CheY-like recei 88.22
PRK09581457 pleD response regulator PleD; Reviewed 88.17
PRK13856241 two-component response regulator VirG; Provisional 87.71
PRK11173237 two-component response regulator; Provisional 87.51
PRK10529225 DNA-binding transcriptional activator KdpE; Provis 87.05
TIGR03787227 marine_sort_RR proteobacterial dedicated sortase s 86.38
PRK10161229 transcriptional regulator PhoB; Provisional 86.07
PRK10336219 DNA-binding transcriptional regulator QseB; Provis 85.71
PRK13435145 response regulator; Provisional 84.59
PRK10816223 DNA-binding transcriptional regulator PhoP; Provis 84.07
PRK09836227 DNA-binding transcriptional activator CusR; Provis 83.76
PRK10693303 response regulator of RpoS; Provisional 83.68
PRK09468239 ompR osmolarity response regulator; Provisional 83.67
PRK14084246 two-component response regulator; Provisional 82.59
TIGR02154226 PhoB phosphate regulon transcriptional regulatory 82.13
PRK10046225 dpiA two-component response regulator DpiA; Provis 82.01
PLN03162526 golden-2 like transcription factor; Provisional 81.91
TIGR02875262 spore_0_A sporulation transcription factor Spo0A. 81.25
PRK11517223 transcriptional regulatory protein YedW; Provision 80.48
TIGR01387218 cztR_silR_copR heavy metal response regulator. Mem 80.45
PRK10955232 DNA-binding transcriptional regulator CpxR; Provis 80.39
CHL00148240 orf27 Ycf27; Reviewed 80.39
>PLN03162 golden-2 like transcription factor; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-70  Score=549.95  Aligned_cols=240  Identities=44%  Similarity=0.750  Sum_probs=186.6

Q ss_pred             CccCCCCCcccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhhhhcccCCccc-cccCchhhh
Q 012449          215 NKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKED-DRKWPHARD  293 (463)
Q Consensus       215 ~~~~~kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~l~~e~-~~~w~~~R~  293 (463)
                      +..++||+||+||+|||++||+||++||+++||||+||++|+|+||||+||||||||||+++++++.+++ +.+|+++|.
T Consensus       229 ~~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaEa~swt~kr~  308 (526)
T PLN03162        229 AAPGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAASWTHRRA  308 (526)
T ss_pred             cCCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhhhccchhhhh
Confidence            4567899999999999999999999999999999999999999999999999999999999999999998 589999887


Q ss_pred             hhhc-----ccCCCCC---CcCCCC-------------CCCCCCCCCCCCCcccCCCCcccccccccCCCC---CCCCCC
Q 012449          294 QMLR-----NYYPHKP---IMAFPP-------------YHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPG---YPPWQQ  349 (463)
Q Consensus       294 ~~~~-----ny~~~~p---~~~f~p-------------~~s~h~~p~~~~~~vwG~p~~~~~~~~~W~~p~---~~~w~p  349 (463)
                      ....     ++....|   -|+||+             ..+.|+.|...++||||||+++++.||||++..   .++|++
T Consensus       309 ~~~~P~~rs~~~~g~p~~~pigfP~~~P~P~~~~~~~P~~~~~Hhpf~rPLhVWGhPtvd~s~v~mWp~h~~~~p~pW~~  388 (526)
T PLN03162        309 YTQAPWPRSSRRDGLPYLVPIHTPHIQPRPSMAMAMQPQLQTPHHPISTPLKVWGYPTVDHSNVHMWQQPAVATPSYWQA  388 (526)
T ss_pred             hccCCcccCCCCCCCccccccCCCCCCCCCCccCCCCCCcccccccccccceeccCCCCCCcccccccccccCCCCCCCC
Confidence            4431     2221111   145553             222344455557899999999999999999743   568999


Q ss_pred             CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCC---CCCC--------------------CCC
Q 012449          350 AE--SWNWKPYPGMPADAWGCPVMPLPNGPYS------SFPQGASGYHNS---GVDD--------------------NSY  398 (463)
Q Consensus       350 ~~--~w~~~py~~~~a~awG~p~~p~~~~p~~------~~p~~~~g~~~~---~~~~--------------------~~~  398 (463)
                      .+  |||+ ||++..|-. |+||||.|...+.      ..|+-.|+|..+   |+.|                    .+.
T Consensus       389 ~Dp~fW~h-~~~~~~a~~-gtpc~p~pm~Rfp~ppv~~G~p~~~P~~p~~~~yy~~d~~a~~~~~~~~~~~~~~~~~~~~  466 (526)
T PLN03162        389 ADGSYWQH-PATGYDAFS-ARACYPHPMQRVPLGTTHAGLPIMAPGFPDESCYYGDDMLAASMYLCNQSYDSEIGRAAGV  466 (526)
T ss_pred             CCcchhhc-ccccCcccc-CCcccCchhhhCCCCCCCCCCccccCCCCchhhcccccchhhcccccccccccccccccch
Confidence            76  7754 888764333 9999997763211      112222233221   1111                    112


Q ss_pred             CCCCCCccCCCcHHHHHHHHHHHHhCCCCCCCCCCCCCChhHHHHHHHHcCCCCCCCC
Q 012449          399 AMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPR  456 (463)
Q Consensus       399 ~~p~~~~d~hPs~E~iDaai~dvl~kPWlPLPLGLKpPs~dsVm~EL~rQGi~~iPp~  456 (463)
                      ...++++++|||||+|||||||||+||||||||||||||+||||+|||||||++|||+
T Consensus       467 ~~~~~~~~~hpSkEsiDAAIgdvLskPWlPlPLGLKpPSldsVm~ELqRQGi~~vpp~  524 (526)
T PLN03162        467 AACSKPIETHLSKEVLDAAIGEALANPWTPPPLGLKPPSMEGVIAELQRQGINTVPPS  524 (526)
T ss_pred             hhcccccccCccHHHHHHHHHHHhhCCCCCCCcCCCCccHHHHHHHHHHcccCCCCCC
Confidence            2245899999999999999999999999999999999999999999999999999996

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PLN03029 type-a response regulator protein; Provisional Back     alignment and domain information
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG4566 TtrR Response regulator [Signal transduction mechanisms] Back     alignment and domain information
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms] Back     alignment and domain information
>smart00426 TEA TEA domain Back     alignment and domain information
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional Back     alignment and domain information
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK09581 pleD response regulator PleD; Reviewed Back     alignment and domain information
>PRK13856 two-component response regulator VirG; Provisional Back     alignment and domain information
>PRK11173 two-component response regulator; Provisional Back     alignment and domain information
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional Back     alignment and domain information
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator Back     alignment and domain information
>PRK10161 transcriptional regulator PhoB; Provisional Back     alignment and domain information
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional Back     alignment and domain information
>PRK13435 response regulator; Provisional Back     alignment and domain information
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional Back     alignment and domain information
>PRK09836 DNA-binding transcriptional activator CusR; Provisional Back     alignment and domain information
>PRK10693 response regulator of RpoS; Provisional Back     alignment and domain information
>PRK09468 ompR osmolarity response regulator; Provisional Back     alignment and domain information
>PRK14084 two-component response regulator; Provisional Back     alignment and domain information
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB Back     alignment and domain information
>PRK10046 dpiA two-component response regulator DpiA; Provisional Back     alignment and domain information
>PLN03162 golden-2 like transcription factor; Provisional Back     alignment and domain information
>TIGR02875 spore_0_A sporulation transcription factor Spo0A Back     alignment and domain information
>PRK11517 transcriptional regulatory protein YedW; Provisional Back     alignment and domain information
>TIGR01387 cztR_silR_copR heavy metal response regulator Back     alignment and domain information
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional Back     alignment and domain information
>CHL00148 orf27 Ycf27; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
1irz_A64 Solution Structure Of Arr10-B Belonging To The Garp 7e-14
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64 Back     alignment and structure 
Iteration: 1

 Score = 75.1 bits (183), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 48/61 (78%)
Query: 219 RKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRH 278
           +KK +V WT ELH KF+ AV+ LGV++A+P +IL+LM V+ LTR NVASHLQK+R+  + 
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62
Query: 279 I 279
           +
Sbjct: 63  V 63

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 2e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 1e-04
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64 Back     alignment and structure
 Score = 97.7 bits (243), Expect = 2e-25
 Identities = 34/61 (55%), Positives = 48/61 (78%)

Query: 219 RKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRH 278
           +KK +V WT ELH KF+ AV+ LGV++A+P +IL+LM V+ LTR NVASHLQK+R+  + 
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62

Query: 279 I 279
           +
Sbjct: 63  V 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 99.95
3kht_A144 Response regulator; PSI-II, 11023K, structural gen 95.66
3hdg_A137 Uncharacterized protein; two-component sensor acti 95.52
2pl1_A121 Transcriptional regulatory protein PHOP; CHEY-like 95.15
1k68_A140 Phytochrome response regulator RCPA; phosphorylate 95.01
3kto_A136 Response regulator receiver protein; PSI-II,struct 95.0
2qv0_A143 Protein MRKE; structural genomics, transcription, 94.89
1xhf_A123 DYE resistance, aerobic respiration control protei 94.73
3cg0_A140 Response regulator receiver modulated diguanylate 94.73
3jte_A143 Response regulator receiver protein; structural ge 94.69
1zgz_A122 Torcad operon transcriptional regulatory protein; 94.61
2a9o_A120 Response regulator; essential protein, YYCF/YYCG h 94.58
3gt7_A154 Sensor protein; structural genomics, signal receiv 94.48
3t6k_A136 Response regulator receiver; flavodoxin-like, stru 94.44
3heb_A152 Response regulator receiver domain protein (CHEY); 94.43
3lua_A140 Response regulator receiver protein; two-component 94.42
2qzj_A136 Two-component response regulator; 11017X, PSI-II, 94.39
3b2n_A133 Uncharacterized protein Q99UF4; structural genomic 94.38
1zh2_A121 KDP operon transcriptional regulatory protein KDPE 94.29
1dz3_A130 Stage 0 sporulation protein A; response regulator, 94.27
3cg4_A142 Response regulator receiver domain protein (CHEY-; 94.27
3i42_A127 Response regulator receiver domain protein (CHEY- 94.24
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 94.22
3cnb_A143 DNA-binding response regulator, MERR family; signa 94.2
3h5i_A140 Response regulator/sensory box protein/ggdef domai 94.12
3grc_A140 Sensor protein, kinase; protein structure initiati 94.07
2zay_A147 Response regulator receiver protein; structural ge 93.92
3cfy_A137 Putative LUXO repressor protein; structural genomi 93.77
1dbw_A126 Transcriptional regulatory protein FIXJ; doubly wo 93.77
3hv2_A153 Response regulator/HD domain protein; PSI-2, NYSGX 93.71
3nhm_A133 Response regulator; protein structure initiative I 93.68
3crn_A132 Response regulator receiver domain protein, CHEY-; 93.61
1i3c_A149 Response regulator RCP1; phytochrome, signaling pr 93.57
2qr3_A140 Two-component system response regulator; structura 93.56
1mvo_A136 PHOP response regulator; phosphate regulon, transc 93.55
3n53_A140 Response regulator receiver modulated diguanylate; 93.41
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 93.16
3hdv_A136 Response regulator; PSI-II, structural genomics, P 93.16
2qxy_A142 Response regulator; regulation of transcription, N 93.15
2jba_A127 Phosphate regulon transcriptional regulatory PROT; 93.09
3eqz_A135 Response regulator; structural genomics, unknown f 93.0
3r0j_A250 Possible two component system response transcript 92.97
3lte_A132 Response regulator; structural genomics, PSI, prot 92.96
1qkk_A155 DCTD, C4-dicarboxylate transport transcriptional r 92.91
3f6c_A134 Positive transcription regulator EVGA; structural 92.78
1qo0_D196 AMIR; binding protein, gene regulator, receptor; 2 92.65
2qsj_A154 DNA-binding response regulator, LUXR family; struc 92.63
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 92.59
3rqi_A184 Response regulator protein; structural genomics, s 92.37
1s8n_A205 Putative antiterminator; RV1626, structural genomi 92.13
3eul_A152 Possible nitrate/nitrite response transcriptional 92.08
3kcn_A151 Adenylate cyclase homolog; SGX, PSI 2, structural 92.06
3cu5_A141 Two component transcriptional regulator, ARAC FAM; 91.8
1a04_A215 Nitrate/nitrite response regulator protein NARL; s 91.49
3cz5_A153 Two-component response regulator, LUXR family; str 91.38
2rjn_A154 Response regulator receiver:metal-dependent phosph 91.34
1kgs_A225 DRRD, DNA binding response regulator D; DNA-bindin 90.79
3dzd_A368 Transcriptional regulator (NTRC family); sigma43 a 90.65
1p2f_A220 Response regulator; DRRB, OMPR/PHOB, transcription 90.39
3q9s_A249 DNA-binding response regulator; DNA binding protei 90.28
2oqr_A230 Sensory transduction protein REGX3; response regul 90.15
1yio_A208 Response regulatory protein; transcription regulat 89.9
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 89.39
3c3w_A225 Two component transcriptional regulatory protein; 89.2
3eq2_A394 Probable two-component response regulator; adaptor 89.19
2hzd_A82 Transcriptional enhancer factor TEF-1; DNA-binding 88.92
1ys7_A233 Transcriptional regulatory protein PRRA; response 88.51
1ny5_A387 Transcriptional regulator (NTRC family); AAA+ ATPa 88.38
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 88.3
2jk1_A139 HUPR, hydrogenase transcriptional regulatory prote 88.25
3bre_A358 Probable two-component response regulator; protein 88.23
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 88.16
1w25_A459 Stalked-cell differentiation controlling protein; 88.14
2hqr_A223 Putative transcriptional regulator; phosporylation 88.03
3klo_A225 Transcriptional regulator VPST; REC domain, HTH do 87.92
3c3m_A138 Response regulator receiver protein; structural ge 87.82
3sy8_A400 ROCR; TIM barrel phosphodiesterase-A, transcriptio 86.14
2gwr_A238 DNA-binding response regulator MTRA; two-component 84.82
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 84.28
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 83.92
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 83.38
3t8y_A164 CHEB, chemotaxis response regulator protein-glutam 83.35
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
Probab=99.95  E-value=6.9e-29  Score=196.33  Aligned_cols=62  Identities=55%  Similarity=0.923  Sum_probs=59.7

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhhhhccc
Q 012449          218 NRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI  279 (463)
Q Consensus       218 ~~kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~  279 (463)
                      +.+|+|++||+|||++||+||++||.++||||.||++|+|+|||++||||||||||++++++
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~   63 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence            46899999999999999999999999999999999999999999999999999999999875
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 Back     alignment and structure
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0 Back     alignment and structure
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Back     alignment and structure
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 Back     alignment and structure
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0 Back     alignment and structure
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} Back     alignment and structure
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Back     alignment and structure
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Back     alignment and structure
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 Back     alignment and structure
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Back     alignment and structure
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Back     alignment and structure
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0 Back     alignment and structure
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0 Back     alignment and structure
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Back     alignment and structure
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} Back     alignment and structure
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus} Back     alignment and structure
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Back     alignment and structure
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* Back     alignment and structure
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Back     alignment and structure
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} Back     alignment and structure
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Back     alignment and structure
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Back     alignment and structure
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} Back     alignment and structure
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Back     alignment and structure
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Back     alignment and structure
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Back     alignment and structure
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Back     alignment and structure
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A Back     alignment and structure
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} Back     alignment and structure
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Back     alignment and structure
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0 Back     alignment and structure
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Back     alignment and structure
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Back     alignment and structure
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0 Back     alignment and structure
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} Back     alignment and structure
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Back     alignment and structure
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} Back     alignment and structure
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 Back     alignment and structure
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} Back     alignment and structure
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A Back     alignment and structure
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} Back     alignment and structure
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Back     alignment and structure
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A Back     alignment and structure
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Back     alignment and structure
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} Back     alignment and structure
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A* Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A* Back     alignment and structure
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV} Back     alignment and structure
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens} Back     alignment and structure
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Back     alignment and structure
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A* Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Back     alignment and structure
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori} Back     alignment and structure
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* Back     alignment and structure
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Back     alignment and structure
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 463
d1irza_64 a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th 9e-24
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.9 bits (228), Expect = 9e-24
 Identities = 34/61 (55%), Positives = 48/61 (78%)

Query: 219 RKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRH 278
           +KK +V WT ELH KF+ AV+ LGV++A+P +IL+LM V+ LTR NVASHLQK+R+  + 
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62

Query: 279 I 279
           +
Sbjct: 63  V 63

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 99.93
d1zh2a1119 Transcriptional regulatory protein KdpE, N-termina 96.91
d1p2fa2120 Response regulator DrrB {Thermotoga maritima [TaxI 96.78
d1kgsa2122 PhoB receiver domain {Thermotoga maritima [TaxId: 96.62
d1zgza1120 TorCAD operon transcriptional regulator TorD, N-te 96.48
d1w25a1139 Response regulator PleD, receiver domain {Caulobac 96.48
d1qkka_140 Transcriptional regulatory protein DctD, receiver 96.47
d2ayxa1133 Sensor kinase protein RcsC, C-terminal domain {Esc 96.42
d1ny5a1137 Transcriptional activator sigm54 (NtrC1), N-termin 96.19
d1w25a2153 Response regulator PleD, receiver domain {Caulobac 96.09
d1yioa2128 Response regulatory protein StyR, N-terminal domai 96.08
d1k68a_140 Response regulator for cyanobacterial phytochrome 95.96
d1qo0d_189 Positive regulator of the amidase operon AmiR {Pse 95.93
d1i3ca_144 Response regulator for cyanobacterial phytochrome 95.78
d1s8na_190 Probable two-component system transcriptional regu 95.4
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 95.03
d1a04a2138 Nitrate/nitrite response regulator (NarL), receive 94.47
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 93.01
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 88.55
d1a2oa1140 Methylesterase CheB, N-terminal domain {Salmonella 87.94
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 87.03
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 84.03
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=9.1e-27  Score=182.11  Aligned_cols=62  Identities=55%  Similarity=0.923  Sum_probs=59.7

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhhhhccc
Q 012449          218 NRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI  279 (463)
Q Consensus       218 ~~kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~  279 (463)
                      ..||+|++||+|||++||+||++||.++||||.|+++|+|+|||++||+|||||||++++++
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k~   63 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhc
Confidence            47899999999999999999999999999999999999999999999999999999998875
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} Back     information, alignment and structure
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} Back     information, alignment and structure
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} Back     information, alignment and structure
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure