Citrus Sinensis ID: 012451

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
MSTNNTNNIKNEDLGLHFLALARASSSSMGGKREEEDFEEEEVPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPNVSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLAYEKPQESSVGYLLEDSQREIVADTVNAMILSTNPNVKDLHGCLHSCLERLLRQLTACCLERRSMNGDQGEAFHLHRVLNSGKKAKC
cccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccEEEEcccccEEEEEccccccccEEEEEEcccccccccEEEEEEEEEEcccccEEEEEEEccccccccccccccccEEEEEcccEEEEccccccccccccccccEEEEEEEccccEEEEEEcccccccEEEccccccccEEEEcccccEEEEccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHcccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHEEcccccccccHHHHcccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEHHHHHcccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEEEEccccccccEEEEEccccccccccEEEEEEEEEEcccccEEEEEEcccccccccccccccccccEEcccccEEcccccccccccccccccEEEEEEEEcccEEEEEccccEccccccccccccccEEEEcccccEEEEEcccccEEEcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHccccccEEEEEHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEHHHHHcccccccc
mstnntnniknedlGLHFLALARAssssmggkreeedfeeeevptelntinssggflvvspdklsvKYTSVnlhghdvgvvqankpapvkRLVYYFEIYVkdagakgqiaigftsesfkmrrqpgweanscgyhgddgllyrgqgkgeafgptfttndtvggginyASQEFfftkngslvgavykdikgplfptiavHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIekislppnvsyGLVRSYLQHygyedtlnsfdlagkttvppvfvaqengfneqdNVYALNQRKTLRQLIRNGEIDAAFDKlrnwhpwivqddksstcFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLAyekpqessvgylledsqREIVADTVNAMILstnpnvkdlhGCLHSCLERLLRQLTACClerrsmngdqgeaFHLHRVlnsgkkakc
mstnntnniknedlgLHFLALARASSSSMGGKREeedfeeeevptelntinssggfLVVSPDKLSVKYTSVNLHGhdvgvvqankpapVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMtiekislppnvSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLAYEKPQESSVGYLLEDSQREIVADTVNAMILSTNPNVKDLHGCLHSCLERLLRQLTACCLERRsmngdqgeafhlhrvlnsgkkakc
MSTNNTNNIKNEDLGLHFLALARASSSSMGGKReeedfeeeevpteLNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPNVSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLAYEKPQESSVGYLLEDSQREIVADTVNAMILSTNPNVKDLHGCLHSCLERLLRQLTACCLERRSMNGDQGEAFHLHRVLNSGKKAKC
**************GLHFLA********************************SGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQ*****QMTIEKISLPPNVSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLAYEKPQESSVGYLLEDSQREIVADTVNAMILSTNPNVKDLHGCLHSCLERLLRQLTACCLERR************************
************************************************TINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPNVSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMEL*******GFEELVQDCVALLAYEKPQESSVGYLLEDSQREIVADTVNAMIL****************LERLLRQLTACCLE*******QGEAFHLHRVLNSG*****
MSTNNTNNIKNEDLGLHFLALARA***********************NTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPNVSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLAYEKPQESSVGYLLEDSQREIVADTVNAMILSTNPNVKDLHGCLHSCLERLLRQLTACCLERRSMNGDQGEAFHLHRVLNSGKKAKC
********************************REEEDFEEEEVPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPNVSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPP******NGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLAYEKPQESSVGYLLEDSQREIVADTVNAMILSTNPNVKDLHGCLHSCLERLLRQLTACCLERRSMNGDQGEAFHLHRVLNS******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSTNNTNNIKNEDLGLHFLALARASSSSMGGKREEEDFEEEEVPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPNVSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLAYEKPQESSVGYLLEDSQREIVADTVNAMILSTNPNVKDLHGCLHSCLERLLRQLTACCLERRSMNGDQGEAFHLHRVLNSGKKAKC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query463 2.2.26 [Sep-21-2011]
Q1LUS8 604 Ran-binding protein 10 OS yes no 0.637 0.488 0.303 5e-42
Q6VN19 620 Ran-binding protein 10 OS yes no 0.585 0.437 0.302 5e-41
Q6VN20 620 Ran-binding protein 10 OS yes no 0.585 0.437 0.302 8e-41
A3KMV8 620 Ran-binding protein 10 OS yes no 0.585 0.437 0.302 8e-41
Q4Z8K6 962 Ran-binding proteins 9/10 no no 0.591 0.284 0.317 4e-40
Q28FM1 548 Ran-binding protein 9 OS= yes no 0.634 0.536 0.298 1e-39
Q9PTY5 548 Ran-binding protein 9 OS= N/A no 0.585 0.494 0.302 4e-39
Q96S59 729 Ran-binding protein 9 OS= no no 0.637 0.404 0.291 2e-38
P69566 653 Ran-binding protein 9 OS= no no 0.637 0.451 0.291 2e-38
A1L252 597 Ran-binding protein 9 OS= no no 0.585 0.453 0.295 8e-38
>sp|Q1LUS8|RBP10_DANRE Ran-binding protein 10 OS=Danio rerio GN=ranbp10 PE=3 SV=1 Back     alignment and function desciption
 Score =  172 bits (436), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 162/316 (51%), Gaps = 21/316 (6%)

Query: 32  KREEEDFEEEEVPTELN-TINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVK 90
           KR      EEE P   + +      ++ +S + L V Y     +  D   V+A  P P  
Sbjct: 28  KRLYPAVNEEETPLPRSWSPKDKYSYIGLSQNNLRVHYKGHGKNHKDAASVRATHPIPAA 87

Query: 91  RLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAF 150
             +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +
Sbjct: 88  CGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPY 147

Query: 151 GPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQ 210
           GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ
Sbjct: 148 GPTFTTGDVIGCCVNLINNTCFYTKNGHSLGVAFTDLPPNLYPTVGLQTPGEIVDANFGQ 207

Query: 211 KKFAFDLKEYEAQERMKQQMTI------EKISLPPNVSYGLVRSYLQHYGYEDTLNSFDL 264
           + F FD+++Y ++ R K    I      E++     V   +V SYL H+GY  T  +F  
Sbjct: 208 QPFVFDIEDYMSEWRAKIHSMIARFPIGERLGDWQAVLQNMVSSYLVHHGYCATAMAFAR 267

Query: 265 AGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDK 324
           A +T +             Q++  ++  R+ +++L+  G +  A D  +  +P +++ + 
Sbjct: 268 ATETMI-------------QEDQTSIKNRQRIQKLVLAGRVGEAIDATQQLYPGLLEHNP 314

Query: 325 SSTCFLLHCQKFIELV 340
            +  F+L C++F+E+V
Sbjct: 315 -NLLFMLKCRQFVEMV 329
May act as an adapter protein to couple membrane receptors to intracellular signaling pathways.
Danio rerio (taxid: 7955)
>sp|Q6VN19|RBP10_MOUSE Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 PE=1 SV=2 Back     alignment and function description
>sp|Q6VN20|RBP10_HUMAN Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1 Back     alignment and function description
>sp|A3KMV8|RBP10_BOVIN Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE=2 SV=1 Back     alignment and function description
>sp|Q4Z8K6|RBP9X_DROME Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster GN=RanBPM PE=1 SV=1 Back     alignment and function description
>sp|Q28FM1|RANB9_XENTR Ran-binding protein 9 OS=Xenopus tropicalis GN=ranbp9 PE=2 SV=1 Back     alignment and function description
>sp|Q9PTY5|RANB9_XENLA Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1 Back     alignment and function description
>sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1 Back     alignment and function description
>sp|P69566|RANB9_MOUSE Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1 Back     alignment and function description
>sp|A1L252|RANB9_DANRE Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
255561642487 conserved hypothetical protein [Ricinus 0.991 0.942 0.785 0.0
449447615468 PREDICTED: ran-binding protein 10-like [ 0.982 0.972 0.796 0.0
449506821468 PREDICTED: ran-binding protein 10-like [ 0.982 0.972 0.796 0.0
357470511468 Ran-binding protein [Medicago truncatula 0.991 0.980 0.735 0.0
356526449462 PREDICTED: ran-binding protein 10-like [ 0.989 0.991 0.756 0.0
356541828459 PREDICTED: ran-binding protein 10-like [ 0.980 0.989 0.753 0.0
224135627492 predicted protein [Populus trichocarpa] 0.963 0.906 0.727 0.0
225460573454 PREDICTED: ran-binding protein 10-like [ 0.971 0.991 0.742 0.0
42571745467 SPla/RYanodine receptor (SPRY) domain-co 0.974 0.965 0.716 0.0
224146356468 predicted protein [Populus trichocarpa] 0.963 0.952 0.710 0.0
>gi|255561642|ref|XP_002521831.1| conserved hypothetical protein [Ricinus communis] gi|223539044|gb|EEF40641.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/467 (78%), Positives = 411/467 (88%), Gaps = 8/467 (1%)

Query: 5   NTNNIKNEDLGLHFLALARASSSSMGGKREEEDFE--------EEEVPTELNTINSSGGF 56
           ++N+ + +D   +FL LAR SS+                     EE PTELNTINSSGGF
Sbjct: 21  SSNSQQQQDPATYFLKLARQSSAGATSSSSSSSVRMMEDEEDVREEEPTELNTINSSGGF 80

Query: 57  LVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSE 116
           +V+S DKLSVKYTSVNLHGHDVG VQANKPAPVKRLVYYFEI++K++GAKGQIAIGFT++
Sbjct: 81  IVISTDKLSVKYTSVNLHGHDVGAVQANKPAPVKRLVYYFEIFIKNSGAKGQIAIGFTND 140

Query: 117 SFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKN 176
           +FKMRRQPGWEANSCGYHGDDG LYRGQGKGE FGPTFT+ DTVG GINY+SQEFFFTKN
Sbjct: 141 TFKMRRQPGWEANSCGYHGDDGHLYRGQGKGEPFGPTFTSKDTVGAGINYSSQEFFFTKN 200

Query: 177 GSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKIS 236
           GS+VGAVYKDIKGPLFPT+AVHS NEE+ VNFGQK+FAFDLKEYEA ERMKQQ TIEKIS
Sbjct: 201 GSVVGAVYKDIKGPLFPTVAVHSLNEEIEVNFGQKQFAFDLKEYEAHERMKQQTTIEKIS 260

Query: 237 LPPNVSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTL 296
           L PNVSYGLVRSYL HYGYE+TLNSFDLA K+TVPP+ VA ENGF+EQD +YALNQR+TL
Sbjct: 261 LSPNVSYGLVRSYLLHYGYEETLNSFDLASKSTVPPIQVALENGFDEQDIMYALNQRRTL 320

Query: 297 RQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMEL 356
           RQLIRNG+IDAA  KLR+W+P IVQD++S+ CFLLHCQKFIELVRVGALEEAVKYGR EL
Sbjct: 321 RQLIRNGDIDAAISKLRDWYPQIVQDERSAMCFLLHCQKFIELVRVGALEEAVKYGRSEL 380

Query: 357 AKYFGLAGFEELVQDCVALLAYEKPQESSVGYLLEDSQREIVADTVNAMILSTNPNVKDL 416
           AK+F L+GF+++VQDCVALLAYE+PQESSVGYLLE++QREIVADTVNAMILSTNPN+KDL
Sbjct: 381 AKFFELSGFDDMVQDCVALLAYEQPQESSVGYLLEEAQREIVADTVNAMILSTNPNLKDL 440

Query: 417 HGCLHSCLERLLRQLTACCLERRSMNGDQGEAFHLHRVLNSGKKAKC 463
            GCL S LERLLRQLT CCLERRS+NGDQGEAFHLHRVLNS KKAKC
Sbjct: 441 QGCLRSYLERLLRQLTVCCLERRSLNGDQGEAFHLHRVLNSSKKAKC 487

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449447615|ref|XP_004141563.1| PREDICTED: ran-binding protein 10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449506821|ref|XP_004162858.1| PREDICTED: ran-binding protein 10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357470511|ref|XP_003605540.1| Ran-binding protein [Medicago truncatula] gi|355506595|gb|AES87737.1| Ran-binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356526449|ref|XP_003531830.1| PREDICTED: ran-binding protein 10-like [Glycine max] Back     alignment and taxonomy information
>gi|356541828|ref|XP_003539374.1| PREDICTED: ran-binding protein 10-like [Glycine max] Back     alignment and taxonomy information
>gi|224135627|ref|XP_002327265.1| predicted protein [Populus trichocarpa] gi|222835635|gb|EEE74070.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225460573|ref|XP_002278721.1| PREDICTED: ran-binding protein 10-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|42571745|ref|NP_973963.1| SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana] gi|332193678|gb|AEE31799.1| SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224146356|ref|XP_002325977.1| predicted protein [Populus trichocarpa] gi|222862852|gb|EEF00359.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
TAIR|locus:2008683467 RanBPM "AT1G35470" [Arabidopsi 0.974 0.965 0.705 1.6e-173
TAIR|locus:2137946447 AT4G09340 "AT4G09340" [Arabido 0.887 0.919 0.684 6.5e-154
TAIR|locus:2137931397 AT4G09200 "AT4G09200" [Arabido 0.801 0.934 0.437 3.1e-76
TAIR|locus:2831730397 AT4G09310 "AT4G09310" [Arabido 0.801 0.934 0.437 3.1e-76
TAIR|locus:2137941349 AT4G09250 "AT4G09250" [Arabido 0.565 0.750 0.450 1.6e-56
MGI|MGI:1921584 620 Ranbp10 "RAN binding protein 1 0.585 0.437 0.316 2.1e-47
UNIPROTKB|F1PA66 620 RANBP10 "Uncharacterized prote 0.585 0.437 0.316 4.3e-47
UNIPROTKB|A3KMV8 620 RANBP10 "Ran-binding protein 1 0.585 0.437 0.316 1.1e-46
UNIPROTKB|Q6VN20 620 RANBP10 "Ran-binding protein 1 0.585 0.437 0.316 1.1e-46
FB|FBgn0262114 962 RanBPM "Ran-binding protein M" 0.591 0.284 0.320 1.2e-46
TAIR|locus:2008683 RanBPM "AT1G35470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1686 (598.6 bits), Expect = 1.6e-173, P = 1.6e-173
 Identities = 324/459 (70%), Positives = 372/459 (81%)

Query:     4 NNTNNIKN-EDLGLHFLALARASSSSMGGKRXXXXXXXXXXXXXLNTINSSGGFLVVSPD 62
             + TNN +N +DL L+FL   R S+     KR             LNTINS+GGFLVVSPD
Sbjct:    14 DTTNNGENGQDLNLNFLDKIRLSA-----KRDAKEDEGEELPTELNTINSAGGFLVVSPD 68

Query:    63 KLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRR 122
             KLSVKYT+ NLHGHDVGVVQANKPAP+K L YYFEI+VKD+G KGQIAIGFT ESFKMRR
Sbjct:    69 KLSVKYTNTNLHGHDVGVVQANKPAPIKCLTYYFEIFVKDSGIKGQIAIGFTKESFKMRR 128

Query:   123 QPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGA 182
             QPGWE NSCGYHGDDG LYRGQGKGE FGP FT +D VGGGINYASQEFFFTKNG++VG 
Sbjct:   129 QPGWEVNSCGYHGDDGYLYRGQGKGEPFGPKFTKDDAVGGGINYASQEFFFTKNGTIVGK 188

Query:   183 VYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPNVS 242
             + KDI+G LFPT+AVHSQNEEVLVNFG+KKFAFD+K YEA ER KQQ+ IEKIS+PPN+ 
Sbjct:   189 IPKDIRGHLFPTVAVHSQNEEVLVNFGKKKFAFDIKGYEASERNKQQLAIEKISIPPNIG 248

Query:   243 YGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRN 302
             YGLV++YL HYGYE+TL++F+LA K TVPP+ + QEN  +E D+ YAL QRK LRQL+RN
Sbjct:   249 YGLVKTYLLHYGYEETLDAFNLATKNTVPPIHIDQENAIDEDDSSYALKQRKNLRQLVRN 308

Query:   303 GEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGL 362
             GEID A  +L+  +P IVQDDKS  CFLLHCQKFIELVRVG LEE V YGR+ELAK+ GL
Sbjct:   309 GEIDTALAELQKLYPQIVQDDKSVVCFLLHCQKFIELVRVGKLEEGVNYGRLELAKFVGL 368

Query:   363 AGFEELVQDCVALLAYEKPQESSVGYLLEDSQREIVADTVNAMILSTNPNVKDLH-GC-L 420
              GF+++V+DC ALLAYEKP+ESSV Y LEDSQRE+VAD VNA ILSTNPN KD+   C L
Sbjct:   369 TGFQDIVEDCFALLAYEKPEESSVWYFLEDSQRELVADAVNAAILSTNPNKKDVQRSCHL 428

Query:   421 HSCLERLLRQLTACCLERRSMNGDQGEAFHLHRVLNSGK 459
              S LE+LLRQLT CCLERRS+NGDQGE F L  VLN+ +
Sbjct:   429 QSHLEKLLRQLTVCCLERRSLNGDQGETFRLRHVLNNNR 467
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008150 "biological_process" evidence=ND
GO:0005737 "cytoplasm" evidence=IDA
TAIR|locus:2137946 AT4G09340 "AT4G09340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137931 AT4G09200 "AT4G09200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2831730 AT4G09310 "AT4G09310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137941 AT4G09250 "AT4G09250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1921584 Ranbp10 "RAN binding protein 10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PA66 RANBP10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A3KMV8 RANBP10 "Ran-binding protein 10" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6VN20 RANBP10 "Ran-binding protein 10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0262114 RanBPM "Ran-binding protein M" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT1G35470
SPla/RYanodine receptor (SPRY) domain-containing protein; SPla/RYanodine receptor (SPRY) domain-containing protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- SPla/RYanodine receptor subgroup (InterPro-IPR018355), CTLH, C-terminal to LisH motif (InterPro-IPR006595), B302 (SPRY)-like (InterPro-IPR001870), LisH dimerisation motif (InterPro-IPR006594), CT11-RanBPM (InterPro-IPR013144), SPla/RYanodine receptor SPR [...] (467 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G43920
transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (523 aa)
    •   0.851
AT5G08560
transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (589 aa)
    •   0.851
AT4G37880
protein binding / zinc ion binding; protein binding / zinc ion binding; FUNCTIONS IN- protein b [...] (388 aa)
    •   0.851
AT3G55070
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (418 aa)
    •   0.851
AT1G61150
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (243 aa)
    •  •0.851
OTS2
OTS2 (OVERLY TOLERANT TO SALT 2); SUMO-specific protease/ cysteine-type peptidase; Encodes a de [...] (571 aa)
   •    0.457
AT5G51880
iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of [...] (250 aa)
   •    0.456
AT5G65950
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (1190 aa)
   •    0.452
AT1G74510
kelch repeat-containing F-box family protein; kelch repeat-containing F-box family protein; FUN [...] (451 aa)
   •    0.436
AT1G21370
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (342 aa)
   •    0.435

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
cd12885132 cd12885, SPRY_RanBP_like, SPRY domain in Ran bindi 4e-57
cd12909153 cd12909, SPRY_RanBP9_10, SPRY domain in Ran bindin 1e-51
cd12908171 cd12908, SPRYD3, SPRY domain-containing protein 3 7e-32
pfam00622125 pfam00622, SPRY, SPRY domain 2e-24
pfam10607144 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif 8e-20
cd12910191 cd12910, SPRY_SSH4_like, SPRY domain in SSH4 and s 1e-19
smart0075799 smart00757, CRA, CT11-RanBPM 3e-18
smart00449122 smart00449, SPRY, Domain in SPla and the RYanodine 6e-16
cd11709118 cd11709, SPRY, SPRY domain 4e-11
smart0066858 smart00668, CTLH, C-terminal to LisH motif 4e-11
cd12873155 cd12873, SPRY_DDX1, SPRY domain associated with DE 1e-08
cd12886128 cd12886, SPRY_like, SPRY domain-like in bacteria 2e-08
cd12872149 cd12872, SPRY_Ash2, SPRY domain in Ash2 1e-07
cd12884176 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous 3e-07
cd13735150 cd13735, SPRY_HECT_like, SPRY domain in HECT E3 5e-06
>gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins, SSH4, HECT E3 and SPRYD3 Back     alignment and domain information 
 Score =  184 bits (470), Expect = 4e-57
 Identities = 66/132 (50%), Positives = 89/132 (67%), Gaps = 1/132 (0%)

Query: 79  GVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDG 138
           G V+A+ P P K  V+YFE+ + D G KG ++IGF +  F + R PGWE  S GYHGDDG
Sbjct: 1   GSVRADHPIPPKVPVFYFEVTILDLGEKGIVSIGFCTSGFPLNRMPGWEDGSYGYHGDDG 60

Query: 139 LLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDI-KGPLFPTIAV 197
            +Y G G+GE +GP F T D VG GIN+ + E FFTKNG L+G  ++++ KG L+PT+ +
Sbjct: 61  RVYLGGGEGENYGPPFGTGDVVGCGINFKTGEIFFTKNGELLGTAFENVVKGRLYPTVGL 120

Query: 198 HSQNEEVLVNFG 209
            S   +V VNFG
Sbjct: 121 GSPGVKVRVNFG 132

This family includes SPRY domains found in Ran binding proteins (RBP or RanBPM) 9 and 10, SSH4 (suppressor of SHR3 null mutation protein 4), SPRY domain-containing protein 3 (SPRYD3) as well as HECT, a C-terminal catalytic domain of a subclass of ubiquitin-protein ligase (E3). RanBP9 and RanBP10 act as androgen receptor (AR) coactivators. Both consist of the N-terminal proline- and glutamine-rich regions, the SPRY domain, and LisH-CTLH and CRA motifs. The SPRY domain in SSH4 may be involved in cargo recognition, either directly or by combination with other adaptors, possibly leading to a higher selectivity. SPRYD3 is highly expressed in most tissues in humans, possibly involved in important cellular processes. HECT E3 mediates the direct transfer of ubiquitin from E2 to substrate. Length = 132
>gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and 10 Back     alignment and domain information
>gnl|CDD|240488 cd12908, SPRYD3, SPRY domain-containing protein 3 Back     alignment and domain information
>gnl|CDD|216029 pfam00622, SPRY, SPRY domain Back     alignment and domain information
>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain Back     alignment and domain information
>gnl|CDD|240490 cd12910, SPRY_SSH4_like, SPRY domain in SSH4 and similar proteins Back     alignment and domain information
>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM Back     alignment and domain information
>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor Back     alignment and domain information
>gnl|CDD|240451 cd11709, SPRY, SPRY domain Back     alignment and domain information
>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif Back     alignment and domain information
>gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1 Back     alignment and domain information
>gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria Back     alignment and domain information
>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2 Back     alignment and domain information
>gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1 Back     alignment and domain information
>gnl|CDD|240493 cd13735, SPRY_HECT_like, SPRY domain in HECT E3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 463
KOG1477469 consensus SPRY domain-containing proteins [General 100.0
KOG2659228 consensus LisH motif-containing protein [Cytoskele 100.0
PF10607145 CLTH: CTLH/CRA C-terminal to LisH motif domain; In 99.93
KOG0349 725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.93
PF00622124 SPRY: SPRY domain; InterPro: IPR003877 The SPRY do 99.91
KOG2626544 consensus Histone H3 (Lys4) methyltransferase comp 99.91
smart00449122 SPRY Domain in SPla and the RYanodine Receptor. Do 99.9
KOG0396389 consensus Uncharacterized conserved protein [Funct 99.84
KOG3953242 consensus SOCS box protein SSB-1, contains SPRY do 99.78
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 99.67
KOG4030197 consensus Uncharacterized conserved protein, conta 99.64
KOG4367699 consensus Predicted Zn-finger protein [Function un 99.54
KOG2243 5019 consensus Ca2+ release channel (ryanodine receptor 99.53
smart0075799 CRA CT11-RanBPM. protein-protein interaction domai 99.51
KOG0293 519 consensus WD40 repeat-containing protein [Function 99.45
KOG1477 469 consensus SPRY domain-containing proteins [General 99.39
smart0066858 CTLH C-terminal to LisH motif. Alpha-helical motif 99.14
KOG2243 5019 consensus Ca2+ release channel (ryanodine receptor 98.89
PF0851327 LisH: LisH; InterPro: IPR013720 The LisH motif is 97.96
KOG0275 508 consensus Conserved WD40 repeat-containing protein 97.48
smart0066734 LisH Lissencephaly type-1-like homology motif. Alp 97.36
PF0717769 Neuralized: Neuralized; InterPro: IPR006573 NEUZ i 92.93
smart00588123 NEUZ domain in neuralized proteins. 92.77
KOG2242558 consensus Scaffold/matrix specific factor hnRNP-U/ 92.47
KOG1333241 consensus Uncharacterized conserved protein [Funct 90.28
KOG2242 558 consensus Scaffold/matrix specific factor hnRNP-U/ 82.24
PF0939881 FOP_dimer: FOP N terminal dimerisation domain; Int 80.53
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=9.8e-38  Score=323.20  Aligned_cols=416  Identities=36%  Similarity=0.482  Sum_probs=334.9

Q ss_pred             CCcccCCCCCccccCCCCCCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEee
Q 012451           35 EEDFEEEEVPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFT  114 (463)
Q Consensus        35 ~~~~~~~~~p~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~  114 (463)
                      +.+++...+|+.||+.+..+.+..+++|...+.+.+......+++++.++.++|..+++|||||.|...+..+.+.||+.
T Consensus        22 ~~~~~~d~i~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g~~~~i~i~~~  101 (469)
T KOG1477|consen   22 PVFTTGDVIPCEVNTINGSDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYGIEGRIKIGFL  101 (469)
T ss_pred             CcCCccccccceEeccCCceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhhhhhceEEEEE
Confidence            34566777899999999878777899999999888875555689999999999999999999999998888899999999


Q ss_pred             CCCCCCCCCCCCCCCeeEEEcCCCcEEe-cCCCCcccCCCCCCCCeEEEEEeccCcEEEEEECCeeeccccccCCCCccc
Q 012451          115 SESFKMRRQPGWEANSCGYHGDDGLLYR-GQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFP  193 (463)
Q Consensus       115 ~~~~~~~~~~G~~~~S~gy~~~~G~~~~-~~~~~~~yg~~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~~i~~~lyP  193 (463)
                      ...+++...+||..+||+|++++|.+++ +...+..|+++|+.||.|||++++...+||||+||..+|.+++.+...++|
T Consensus       102 ~~~~~~~~~~g~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D~ig~~~~~~~q~i~~t~~g~~~~~~~~~~~~~~~~  181 (469)
T KOG1477|consen  102 IDSFSIIESEGYTMNSLGYHGNSGLLDNGGAELGEEFGPTFTTGDEIGCGINEITQEIFFTKNGTEVGEIIKPLSPDLLE  181 (469)
T ss_pred             ecccccccccchhhhhhcccCCchhhhhhhhhhchhhcCCCCccceeeeccchhhheeeeccCccccccccccccccccc
Confidence            9999999999999999999999999999 667789999999999999999999999999999999999999999888888


Q ss_pred             E----EEEccCCeEEEEecC-CCCCcCChhhhhHHHHH-----------------HHhhhhhhcCCCCcchhHHHHHHHH
Q 012451          194 T----IAVHSQNEEVLVNFG-QKKFAFDLKEYEAQERM-----------------KQQMTIEKISLPPNVSYGLVRSYLQ  251 (463)
Q Consensus       194 ~----V~~~~~~~~v~~NFG-~~pF~f~~~~~~~~~~~-----------------~~~~~I~~~~l~~~~l~~LI~~yL~  251 (463)
                      .    +.+.+++..|.+||| ..+|.|+...+......                 .....+....++......++..|++
T Consensus       182 ~~~n~~~~~s~~~~I~~~~g~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~l~t~~~~~~~l  261 (469)
T KOG1477|consen  182 ENGNLAWLFSPNEEVEVNFGLEEEFRFDFSGYPKSQSSLPVSPIPSKIFEDSYPENKKRNVEKEVISFNLSTVPYPYFLL  261 (469)
T ss_pred             cccceeeEeccCceeeeeecCCCceeeccccccccccccccccccccccccccccccccccccceecccccCCCccceec
Confidence            8    888889999999999 78999998765433211                 1111122222333345578999999


Q ss_pred             hcChHHHHHHHHHhcCCCCCCcccccccCCCcc-----hhhhhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcchhcCCCc
Q 012451          252 HYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQ-----DNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSS  326 (463)
Q Consensus       252 ~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~-----~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~  326 (463)
                      +.||.++++.|...+.....+....+++..+..     ........|+.+...+..|....|+.-.......+.+...+.
T Consensus       262 ~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  341 (469)
T KOG1477|consen  262 PGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIPTYRKVGQVFEVDYPQ  341 (469)
T ss_pred             CcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccccccccceeecccccc
Confidence            999999999998776543223222222222211     112223333344444444444444443333333222222347


Q ss_pred             eeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcC---CcchHHHHHHhhheeeecCCCCCchhhcCCHhHHHHHHHHHH
Q 012451          327 TCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFG---LAGFEELVQDCVALLAYEKPQESSVGYLLEDSQREIVADTVN  403 (463)
Q Consensus       327 l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~---~~~~~~~l~~~~~LLay~~~~~sp~~~ll~~~~R~~la~~vn  403 (463)
                      ..+++.|+.+|++.+.+.+..++++.+.++++.-+   +.....+++..++||+|.+|..||...++++.+|+-+++.+|
T Consensus       342 ~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~s~~g~~~~~~~~e~v~~~~n  421 (469)
T KOG1477|consen  342 RGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEESPVGYLLDPIQREPVAEALN  421 (469)
T ss_pred             hhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCcccCccccccCcccchhHHhhhc
Confidence            89999999999999999999999999999998876   667889999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCceeEehhhhc
Q 012451          404 AMILSTNPNVKDLHGCLHSCLERLLRQLTACCLERRSMNGDQGEAFHLHRVLN  456 (463)
Q Consensus       404 ~aIL~~~~~~~~p~~~~~s~LE~l~~q~~~~q~~~~~~~~~~~~~~~~~~~~~  456 (463)
                      .+||...+.++      ...||.++.|+.++...++..+.+.+.++++++.++
T Consensus       422 ~~il~t~~~~~------~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (469)
T KOG1477|consen  422 SAILETDNNSK------DPDLERVLSQTPAELSLYARDNPPRNDFVRDRDYFH  468 (469)
T ss_pred             ccccccCCCCc------cchhhhhhccchhhHhhhhhcCCCccceecchhhhc
Confidence            99999988764      456999999999999999999999999999998875

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton] Back     alignment and domain information
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function Back     alignment and domain information
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00449 SPRY Domain in SPla and the RYanodine Receptor Back     alignment and domain information
>KOG0396 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only] Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown] Back     alignment and domain information
>KOG4367 consensus Predicted Zn-finger protein [Function unknown] Back     alignment and domain information
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms] Back     alignment and domain information
>smart00757 CRA CT11-RanBPM Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only] Back     alignment and domain information
>smart00668 CTLH C-terminal to LisH motif Back     alignment and domain information
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms] Back     alignment and domain information
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>smart00667 LisH Lissencephaly type-1-like homology motif Back     alignment and domain information
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i Back     alignment and domain information
>smart00588 NEUZ domain in neuralized proteins Back     alignment and domain information
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification] Back     alignment and domain information
>KOG1333 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification] Back     alignment and domain information
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
2yyo_A171 Crystal Sturcture Of Human Spry Domain Length = 171 2e-19
>pdb|2YYO|A Chain A, Crystal Sturcture Of Human Spry Domain Length = 171 Back     alignment and structure 
Iteration: 1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 81/151 (53%), Gaps = 10/151 (6%)
Query: 66  VKYTSVNLHGH--DVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQ 123
           V   +++ HG+  +VG   A++P  + +   YFE+ + D+G +G IA+G   + + +  Q
Sbjct: 13  VDGDTLSYHGNSGEVGCYVASRP--LTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQ 70
Query: 124 PGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYAS-----QEFFFTKNGS 178
           PGW  +S  YH DDG LY G+ KG  FG    + D +G GI   S      + FFTKNG 
Sbjct: 71  PGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGK 130
Query: 179 LVGA-VYKDIKGPLFPTIAVHSQNEEVLVNF 208
            VG+ +       LFP +  HS  EEV ++ 
Sbjct: 131 RVGSTIXPXSPDGLFPAVGXHSLGEEVRLHL 161

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
2yyo_A171 SPRY domain-containing protein 3; NPPSFA, national 3e-50
3toj_A213 SET1/ASH2 histone methyltransferase complex subun; 3e-36
3emw_A217 SPRY domain-containing SOCS box protein 2; apoptos 1e-23
2jk9_A212 SPRY domain-containing SOCS box protein 1; transcr 3e-20
2afj_A226 Gene rich cluster, C9 gene; beta sandwich, gene re 1e-19
2e63_A170 KIAA1787 protein; structure genomics, neuralized d 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Length = 171 Back     alignment and structure
 Score =  167 bits (425), Expect = 3e-50
 Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 51  NSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIA 110
           + S GF  +  D  ++ Y     +  +VG   A++P    +   YFE+ + D+G +G IA
Sbjct: 3   SGSSGFKHILVDGDTLSYHG---NSGEVGCYVASRPLT--KDSNYFEVSIVDSGVRGTIA 57

Query: 111 IGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGI-----N 165
           +G   + + +  QPGW  +S  YH DDG LY G+ KG  FG    + D +G GI     +
Sbjct: 58  VGLVPQYYSLDHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFD 117

Query: 166 YASQEFFFTKNGSLVGAVYKDIK-GPLFPTIAVHSQNEEVLVNFGQ 210
             + + FFTKNG  VG+    +    LFP + +HS  EEV ++   
Sbjct: 118 VQTAQIFFTKNGKRVGSTIMPMSPDGLFPAVGMHSLGEEVRLHLNA 163
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Length = 213 Back     alignment and structure
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Length = 217 Back     alignment and structure
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Length = 212 Back     alignment and structure
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Length = 226 Back     alignment and structure
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 170 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
2yyo_A171 SPRY domain-containing protein 3; NPPSFA, national 100.0
3toj_A213 SET1/ASH2 histone methyltransferase complex subun; 100.0
3emw_A217 SPRY domain-containing SOCS box protein 2; apoptos 99.93
2jk9_A212 SPRY domain-containing SOCS box protein 1; transcr 99.91
2afj_A226 Gene rich cluster, C9 gene; beta sandwich, gene re 99.88
2vok_A188 52 kDa RO protein; polymorphism, immune system, me 99.22
2fbe_A201 Predicted: similar to RET finger protein-like 1; d 99.21
3uv9_A186 TRIM5alpha, tripartite motif-containing protein 5; 99.19
2wl1_A191 Pyrin, marenostrin; amyloidosis, polymorphism, cyt 99.18
3kb5_A193 Tripartite motif-containing protein 72; B30.2, gus 99.01
2e63_A170 KIAA1787 protein; structure genomics, neuralized d 98.81
4b3n_A602 Maltose-binding periplasmic protein, tripartite mo 98.68
2yue_A168 Protein neuralized; structure genomics, NEUZ(NHR) 98.17
1uuj_A88 Platelet-activating factor acetylhydrolase IB ALP 86.11
2xtc_A90 F-box-like/WD repeat-containing protein TBL1X; tra 81.58
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3e-38  Score=288.22  Aligned_cols=158  Identities=34%  Similarity=0.665  Sum_probs=138.8

Q ss_pred             CCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCCCCCCCCCCCCCCCeeE
Q 012451           53 SGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCG  132 (463)
Q Consensus        53 ~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~~~~~~~~~G~~~~S~g  132 (463)
                      ++..|.+++|.+  +|++..   .++++|||++|++  +|+|||||+|...+..+.++|||++..+++++++||+.+|||
T Consensus         7 r~~~l~~~~d~l--~~~~~~---~~~~~vra~~p~~--~g~~YfEv~i~~~~~~~~~~IG~a~~~~~~~~~~G~d~~S~g   79 (171)
T 2yyo_A            7 GFKHILVDGDTL--SYHGNS---GEVGCYVASRPLT--KDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPGWLPDSVA   79 (171)
T ss_dssp             EEESEEEETTEE--EECCCS---SCCEEEECSSCCC--SSSCEEEEEEEEETTTCCCEEEEECTTCCTTSCTTSSTTCEE
T ss_pred             CcceEEEcCCEE--EEeCCC---CceeEEEECCCCC--CCCEEEEEEEEECCCCcEEEEEecCCCCCCccCCCccCCEEE
Confidence            455788987754  566643   3799999999996  699999999999888889999999999999999999999999


Q ss_pred             EEcCCCcEEecCCCCcccCCCCCCCCeEEEEEecc-----CcEEEEEECCeeeccccccCC-CCcccEEEEccCCeEEEE
Q 012451          133 YHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYA-----SQEFFFTKNGSLVGAVYKDIK-GPLFPTIAVHSQNEEVLV  206 (463)
Q Consensus       133 y~~~~G~~~~~~~~~~~yg~~~~~GDvIGcgid~~-----~~~ifFtkNG~~lg~af~~i~-~~lyP~V~~~~~~~~v~~  206 (463)
                      |++++|++||+...+..||++|++||||||+||++     .++|||||||+.||+||.++. +.|||+|++..++++|++
T Consensus        80 y~~~dG~~~~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~~~~~~lyPaV~l~~~g~~v~v  159 (171)
T 2yyo_A           80 YHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMSPDGLFPAVGMHSLGEEVRL  159 (171)
T ss_dssp             EETTTCCEESSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEESSCSSSCEEEEEECSTTEEEEE
T ss_pred             EEcCCCeEEeCCCCCCcCCCCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecCCcCCCEEEEEEEecCCCEEEE
Confidence            99999999998767899999999999999999998     499999999999999999995 899999999987899999


Q ss_pred             ecCCCCCcCChh
Q 012451          207 NFGQKKFAFDLK  218 (463)
Q Consensus       207 NFG~~pF~f~~~  218 (463)
                      |||+ +|.++|.
T Consensus       160 NFG~-~~~~pp~  170 (171)
T 2yyo_A          160 HLNA-ELSGPSS  170 (171)
T ss_dssp             ETTC-CC-----
T ss_pred             ECCC-CCcCCCC
Confidence            9998 8988764
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Back     alignment and structure
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Back     alignment and structure
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Back     alignment and structure
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Back     alignment and structure
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B* Back     alignment and structure
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22 Back     alignment and structure
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta} Back     alignment and structure
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens} Back     alignment and structure
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens} Back     alignment and structure
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A Back     alignment and structure
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster} Back     alignment and structure
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 Back     alignment and structure
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 463
d2fnja1217 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophi 2e-18
d2afja1213 b.29.1.22 (A:12-224) SPRY domain-containing SOCS b 1e-16
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 81.4 bits (200), Expect = 2e-18
 Identities = 22/185 (11%), Positives = 55/185 (29%), Gaps = 19/185 (10%)

Query: 39  EEEEVPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEI 98
            + ++    N+ + S   + V  D     +        D   ++      + + ++ +EI
Sbjct: 18  RDLQLKHSWNSEDRSL-NIFVKEDDKLTFHRHPVAQSTDC--IRGKVG--LTKGLHIWEI 72

Query: 99  YVKDAGAKGQIAIGFTSESFKMRRQ-----PGWEANSCGYHGDDGLLY--------RGQG 145
           Y           +G  +    +         G    S G+      LY            
Sbjct: 73  YWPTRQRGTHAVVGVCTADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYP 132

Query: 146 KGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKG-PLFPTIAVHSQNEEV 204
                   F   D     ++       F  +   +G  ++ ++G  L+P ++    + E+
Sbjct: 133 AILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEI 192

Query: 205 LVNFG 209
            + + 
Sbjct: 193 TMRYI 197
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 213 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
d2fnja1217 LD34464p {Fruit fly (Drosophila melanogaster) [Tax 99.97
d2afja1213 SPRY domain-containing SOCS box protein 2 {Mouse ( 99.94
d2fbea1188 Similar to Ret finger protein-like 1 {Human (Homo 99.28
d2iwgb1179 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 96 99.22
d1uuja_76 Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te 87.35
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.6e-30  Score=244.02  Aligned_cols=182  Identities=11%  Similarity=0.128  Sum_probs=149.3

Q ss_pred             CCCccccCCCCCCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCCCCCC-
Q 012451           42 EVPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKM-  120 (463)
Q Consensus        42 ~~p~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~~~~~-  120 (463)
                      +++.+||+.+ ++..+.||+|++.+.+.....  ..+.+||++.++.  +|+|||||+|........+.|||++...++ 
T Consensus        21 ~~~~~wn~~~-~~~~~~ls~~~~~~~~~~~~~--~~~~~vrgt~g~s--sGk~YWEV~v~~~~~~~~~~IGV~~~~~~~~   95 (217)
T d2fnja1          21 QLKHSWNSED-RSLNIFVKEDDKLTFHRHPVA--QSTDCIRGKVGLT--KGLHIWEIYWPTRQRGTHAVVGVCTADAPLH   95 (217)
T ss_dssp             HHHTSEEEEE-ECTTEEEETTEEEEEEECCCT--TEEEEEEESCCBC--SSEEEEEEECCGGGCTTCCEEEEECTTSCSE
T ss_pred             cccccCChhc-CCCCEEEeCCCceEEEeCCcc--ccCCeEEEccccc--CCcEEEEEEEecCCCCCeeEEEEEecccCcc
Confidence            5678999965 677899999999888775432  3578999999985  799999999987644567899999998765 


Q ss_pred             ----CCCCCCCCCeeEEEcCCCcEEecCCC--------CcccCCCCCCCCeEEEEEeccCcEEEEEECCeeeccccccCC
Q 012451          121 ----RRQPGWEANSCGYHGDDGLLYRGQGK--------GEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIK  188 (463)
Q Consensus       121 ----~~~~G~~~~S~gy~~~~G~~~~~~~~--------~~~yg~~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~~i~  188 (463)
                          ...+|++.+||+|+..+|.++|+...        ...||++|..||||||+||+++|+|+|+|||+.+|+||+++.
T Consensus        96 ~~~~~~~~G~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~gDvIGV~LD~d~gtLsF~kNG~~lGvAf~~l~  175 (217)
T d2fnja1          96 SVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRGLR  175 (217)
T ss_dssp             EESSCCCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTCCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT
T ss_pred             cCCccccccCCCCcceEecCCCEEEecCCCccccccCcccccCCccCCCCEEEEEEeCCCCEEEEEECCEEeeEEEeCCC
Confidence                34689999999999989999987532        235789999999999999999999999999999999999995


Q ss_pred             -CCcccEEEEccCCeEEEEecCCCCCcCChhhhhHHHHHHHh
Q 012451          189 -GPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQ  229 (463)
Q Consensus       189 -~~lyP~V~~~~~~~~v~~NFG~~pF~f~~~~~~~~~~~~~~  229 (463)
                       ..+||+|+....+++|+++|.. .+...|..++..|++.++
T Consensus       176 ~~~lyP~vs~~~~~~~v~~~~~~-~~~~~~~~l~~~c~~~~~  216 (217)
T d2fnja1         176 GKKLYPIVSAVWGHCEITMRYIG-GLDPEPLPLMDLCRRTIR  216 (217)
T ss_dssp             TCCBEEEEEECCTTCEEEEEEEE-EECSSCCCHHHHHHHHHT
T ss_pred             CCeEEEEEEeccCCcEEEEEEcC-CcCCCCCCHHHHHHHHhc
Confidence             4899999988778999999864 334444466666766553
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure