Citrus Sinensis ID: 012458

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
MVLSSADKNHETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHcEEEEEEcccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHEEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHcccccccccccccccccccEEEHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
cccccccccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
mvlssadknhetpllpaqdpepfikrtGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLcdchrgpdpeygpgrnrsyLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKsncyhregheaaceysDTYYMLIFGAVQLILsqapdfhniQSLSVIAAVMSFAYSFIGFGLGVAKVIGngfvmgsfsgvstTTSIEKMWLVAQALGDIAFAYPYSLILIEIQdtlkspppanqtmkkastmSIITTTIFYLFCggfgyaafgdntpgnlltgfgfyepywlidLANAFIVIHLVGgyqvysqpiFAHFEKWIcekfpengflnnefflkpplmpafrwnplrlcfRTVYVVSVTAIAMSFPYFNQVLGVIggvifwpltiyfpVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
mvlssadknhetpllpaqdpepFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
MVLSSADKNHETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
**********************FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT****************MSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII*****
***************************GTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKL*
***********TPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
****************AQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA***
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MVLSSADKNHETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query463 2.2.26 [Sep-21-2011]
Q9FF99467 Probable amino acid perme yes no 0.995 0.987 0.561 1e-145
Q38967493 Amino acid permease 2 OS= no no 0.982 0.922 0.514 1e-139
Q39134476 Amino acid permease 3 OS= no no 0.943 0.918 0.518 1e-132
O80592475 Amino acid permease 8 OS= no no 0.950 0.926 0.520 1e-131
Q9FN04466 Amino acid permease 4 OS= no no 0.961 0.954 0.496 1e-130
Q8GUM3480 Amino acid permease 5 OS= no no 0.965 0.931 0.509 1e-130
Q42400485 Amino acid permease 1 OS= no no 0.952 0.909 0.496 1e-127
P92934481 Amino acid permease 6 OS= no no 0.952 0.916 0.501 1e-123
Q9FKS8446 Lysine histidine transpor no no 0.831 0.863 0.286 9e-39
Q9LRB5441 Lysine histidine transpor no no 0.803 0.843 0.302 1e-36
>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1 Back     alignment and function desciption
 Score =  515 bits (1326), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 261/465 (56%), Positives = 332/465 (71%), Gaps = 4/465 (0%)

Query: 1   MVLSSADKNHETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIA 60
           M +   D++        Q  +    RTGTLWTAVAHIITGVIG+GVLSLAW+ A+LGWIA
Sbjct: 1   MDIKEDDESRVITPTELQLHDSVTARTGTLWTAVAHIITGVIGAGVLSLAWATAELGWIA 60

Query: 61  GPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHV 120
           GP A++ FA VTL + FLL DC+R PDP  GP R  SY +AV + LGK N   C   V++
Sbjct: 61  GPAALIAFAGVTLLSAFLLSDCYRFPDPNNGPLRLNSYSQAVKLYLGKKNEIVCGVVVYI 120

Query: 121 GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDT--YYMLIFGAVQLILSQAPD 178
            L+G  IAYT+  A   RAI KSNCYHR GH A C Y D   Y+M++FG  Q+ +SQ P+
Sbjct: 121 SLFGCGIAYTIVIATCSRAIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPN 180

Query: 179 FHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALG 238
           FHN+  LS++AA+MSF YSFIG GL + K+I N  + GS  G+      EK+W+V QALG
Sbjct: 181 FHNMVWLSLVAAIMSFTYSFIGIGLALGKIIENRKIEGSIRGIPAENRGEKVWIVFQALG 240

Query: 239 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP 298
           +IAF+YP+S+IL+EIQDTL+SPP   QTMKKAST+++   T F+  CG FGYAAFGD+TP
Sbjct: 241 NIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTP 300

Query: 299 GNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEF 358
           GNLLTGFGFYEP+WL+D ANA IV+HLVGGYQVYSQPIFA  E+ + +K+PEN F+   +
Sbjct: 301 GNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFY 360

Query: 359 FLKPPLM--PAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPV 416
             K PL+     R NP+R+C RT+YV+  T +A+ FPYFN+VLGV+G + FWPL +YFPV
Sbjct: 361 GFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPV 420

Query: 417 EMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAK 461
           EM   Q  I +WTR W++LR FS+VC +V    LVGSI G++ AK
Sbjct: 421 EMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLVGAK 465
Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2 Back     alignment and function description
>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1 Back     alignment and function description
>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1 Back     alignment and function description
>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1 Back     alignment and function description
>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1 Back     alignment and function description
>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
255586130461 amino acid transporter, putative [Ricinu 0.980 0.984 0.709 0.0
225462048472 PREDICTED: probable amino acid permease 0.982 0.963 0.683 0.0
224146569431 amino acid permease [Populus trichocarpa 0.930 1.0 0.691 0.0
224122284458 amino acid permease [Populus trichocarpa 0.956 0.967 0.664 1e-175
359494348 623 PREDICTED: probable amino acid permease 0.956 0.711 0.634 1e-170
296089993458 unnamed protein product [Vitis vinifera] 0.956 0.967 0.634 1e-170
224122276471 amino acid permease [Populus trichocarpa 0.982 0.966 0.641 1e-169
357495243467 Amino acid permease [Medicago truncatula 0.980 0.972 0.626 1e-169
356569591447 PREDICTED: probable amino acid permease 0.950 0.984 0.652 1e-168
255586132456 amino acid transporter, putative [Ricinu 0.954 0.969 0.644 1e-168
>gi|255586130|ref|XP_002533727.1| amino acid transporter, putative [Ricinus communis] gi|223526365|gb|EEF28658.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/454 (70%), Positives = 383/454 (84%)

Query: 10  HETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFA 69
            ETPLL  Q  E  ++RTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPL M+ FA
Sbjct: 8   QETPLLQKQAAETALERTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLTMMCFA 67

Query: 70  SVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAY 129
            VTL +T+LLCDC+R P PE GP RNRSYL+AVD+ LGK  +W C  FV + LYGT IAY
Sbjct: 68  LVTLLSTYLLCDCYRFPHPELGPSRNRSYLQAVDVSLGKKASWICGIFVELSLYGTGIAY 127

Query: 130 TVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIA 189
           T+TSAISMRAI+KSNCYH+EGH AACE+SDT YMLIFGA Q+I+SQ PDFHN++ LS++A
Sbjct: 128 TITSAISMRAIRKSNCYHKEGHSAACEFSDTSYMLIFGAFQIIVSQIPDFHNMEWLSILA 187

Query: 190 AVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLI 249
           AVMSF YS IGFGLG+A+VI NG+ MGS +GVS +++ +K+W ++QALGDIAFAYPYSLI
Sbjct: 188 AVMSFTYSSIGFGLGLAQVIENGYAMGSITGVSASSAADKVWNISQALGDIAFAYPYSLI 247

Query: 250 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYE 309
           L+EIQDTLKSPP  N+TM+KAST++++ TT FYL CG FGYAAFG++TPGNLLTGFGFYE
Sbjct: 248 LLEIQDTLKSPPTENETMRKASTIALVVTTFFYLCCGAFGYAAFGEDTPGNLLTGFGFYE 307

Query: 310 PYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFR 369
           PYWLID ANA IV+HLVGGYQVYSQP+FA  EKW  E+ P + F+NN + LK PL+PAF 
Sbjct: 308 PYWLIDFANACIVLHLVGGYQVYSQPVFATIEKWFAERHPASRFINNNYSLKLPLLPAFG 367

Query: 370 WNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWT 429
            N  R+CFRT+YVVS TAI+M FPYFNQV+G++G + FWPLTIYFPVEMYF+Q NIEAWT
Sbjct: 368 LNAFRICFRTLYVVSTTAISMIFPYFNQVIGLLGALNFWPLTIYFPVEMYFRQRNIEAWT 427

Query: 430 RKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS 463
            KW+MLR FS V F+V+   LVGS++G+ISAKLS
Sbjct: 428 IKWIMLRAFSIVVFLVAAIALVGSVEGVISAKLS 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225462048|ref|XP_002268936.1| PREDICTED: probable amino acid permease 7 [Vitis vinifera] gi|296089992|emb|CBI39811.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224146569|ref|XP_002336318.1| amino acid permease [Populus trichocarpa] gi|222834652|gb|EEE73115.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122284|ref|XP_002330585.1| amino acid permease [Populus trichocarpa] gi|222872143|gb|EEF09274.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359494348|ref|XP_002268981.2| PREDICTED: probable amino acid permease 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296089993|emb|CBI39812.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224122276|ref|XP_002330583.1| amino acid permease [Populus trichocarpa] gi|222872141|gb|EEF09272.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357495243|ref|XP_003617910.1| Amino acid permease [Medicago truncatula] gi|355519245|gb|AET00869.1| Amino acid permease [Medicago truncatula] Back     alignment and taxonomy information
>gi|356569591|ref|XP_003552982.1| PREDICTED: probable amino acid permease 7-like [Glycine max] Back     alignment and taxonomy information
>gi|255586132|ref|XP_002533728.1| amino acid transporter, putative [Ricinus communis] gi|223526366|gb|EEF28659.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
TAIR|locus:2172868467 AAP7 "amino acid permease 7" [ 0.941 0.933 0.586 1.4e-144
TAIR|locus:2184707493 AAP2 "amino acid permease 2" [ 0.961 0.902 0.521 1.3e-130
TAIR|locus:2031402476 AAP3 "amino acid permease 3" [ 0.935 0.909 0.532 2.3e-126
TAIR|locus:2201871475 AAP8 "amino acid permease 8" [ 0.937 0.913 0.525 1.2e-122
TAIR|locus:2163981466 AAP4 "amino acid permease 4" [ 0.961 0.954 0.496 1.9e-122
TAIR|locus:2205876480 AAP5 "amino acid permease 5" [ 0.933 0.9 0.525 5.1e-122
TAIR|locus:2168912481 AAP6 "amino acid permease 6" [ 0.939 0.904 0.505 5.8e-121
TAIR|locus:2016600485 AAP1 "amino acid permease 1" [ 0.939 0.896 0.501 1.8e-119
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.665 0.698 0.341 6.1e-52
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.697 0.732 0.308 5.3e-47
TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1413 (502.5 bits), Expect = 1.4e-144, P = 1.4e-144
 Identities = 258/440 (58%), Positives = 325/440 (73%)

Query:    26 RTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRG 85
             RTGTLWTAVAHIITGVIG+GVLSLAW+ A+LGWIAGP A++ FA VTL + FLL DC+R 
Sbjct:    26 RTGTLWTAVAHIITGVIGAGVLSLAWATAELGWIAGPAALIAFAGVTLLSAFLLSDCYRF 85

Query:    86 PDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNC 145
             PDP  GP R  SY +AV + LGK N   C   V++ L+G  IAYT+  A   RAI KSNC
Sbjct:    86 PDPNNGPLRLNSYSQAVKLYLGKKNEIVCGVVVYISLFGCGIAYTIVIATCSRAIMKSNC 145

Query:   146 YHREGHEAACEYSDT--YYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGL 203
             YHR GH A C Y D   Y+M++FG  Q+ +SQ P+FHN+  LS++AA+MSF YSFIG GL
Sbjct:   146 YHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSFIGIGL 205

Query:   204 GVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA 263
              + K+I N  + GS  G+      EK+W+V QALG+IAF+YP+S+IL+EIQDTL+SPP  
Sbjct:   206 ALGKIIENRKIEGSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAE 265

Query:   264 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVI 323
              QTMKKAST+++   T F+  CG FGYAAFGD+TPGNLLTGFGFYEP+WL+D ANA IV+
Sbjct:   266 KQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVL 325

Query:   324 HLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLM--PAFRWNPLRLCFRTVY 381
             HLVGGYQVYSQPIFA  E+ + +K+PEN F+   +  K PL+     R NP+R+C RT+Y
Sbjct:   326 HLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMY 385

Query:   382 VVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYV 441
             V+  T +A+ FPYFN+VLGV+G + FWPL +YFPVEM   Q  I +WTR W++LR FS+V
Sbjct:   386 VLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFV 445

Query:   442 CFIVSTFGLVGSIQGIISAK 461
             C +V    LVGSI G++ AK
Sbjct:   446 CLLVCLLSLVGSIYGLVGAK 465
GO:0005886 "plasma membrane" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA
GO:0006865 "amino acid transport" evidence=ISS
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FF99AAP7_ARATHNo assigned EC number0.56120.99560.9871yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 2e-91
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 3e-11
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  283 bits (726), Expect = 2e-91
 Identities = 118/439 (26%), Positives = 195/439 (44%), Gaps = 38/439 (8%)

Query: 26  RTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRG 85
            T + W AV ++I  +IG+GVLSL ++  QLGWI G + +VI   ++L+   LL  C + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 86  PDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNC 145
            D   G  R +SY +      G        F + V L+G  I+Y + +  ++ AI  S  
Sbjct: 61  VDKVKGK-RRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF 119

Query: 146 YHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGV 205
                    C  S  Y+++IFG + + LS  P+   +  LS++AAV S           +
Sbjct: 120 DT-------CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLY---------I 163

Query: 206 AKVIGNGFVMGSFSGVS----TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 261
             ++ +   +G  +          +  K+  +  A+G I FA+    +L+ IQ+T+KS P
Sbjct: 164 VILVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-P 222

Query: 262 PANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFI 321
              + M K    +II  T+ Y+  G  GY AFG+N  GN+L         WLID+AN  +
Sbjct: 223 SKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLL 280

Query: 322 VIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVY 381
           V+HL+  Y + + PI    E  +  K       +N                LR+  R+  
Sbjct: 281 VLHLLLSYPLQAFPIRQIVENLLFRKG--ASGKHNPKSKL-----------LRVVIRSGL 327

Query: 382 VVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRV-FSY 440
           VV    IA+S P+    L ++G     PLT   P   + K    +  + + +        
Sbjct: 328 VVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDV 387

Query: 441 VCFIVSTFGLVGSIQGIIS 459
           +C ++    +   + G+I 
Sbjct: 388 ICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 463
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.95
PRK10483414 tryptophan permease; Provisional 99.95
PRK09664415 tryptophan permease TnaB; Provisional 99.95
PRK15132403 tyrosine transporter TyrP; Provisional 99.94
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.92
PRK13629443 threonine/serine transporter TdcC; Provisional 99.91
TIGR00814397 stp serine transporter. The HAAAP family includes 99.87
PRK10655438 potE putrescine transporter; Provisional 99.55
PRK15049499 L-asparagine permease; Provisional 99.52
PRK10249458 phenylalanine transporter; Provisional 99.5
PRK10644445 arginine:agmatin antiporter; Provisional 99.5
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.49
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.46
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.44
PRK10746461 putative transport protein YifK; Provisional 99.43
TIGR00909429 2A0306 amino acid transporter. 99.41
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.41
PRK11021410 putative transporter; Provisional 99.4
PRK10238456 aromatic amino acid transporter; Provisional 99.4
PRK11387471 S-methylmethionine transporter; Provisional 99.4
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.39
PRK10580457 proY putative proline-specific permease; Provision 99.39
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.37
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.37
TIGR00913478 2A0310 amino acid permease (yeast). 99.36
PRK10836489 lysine transporter; Provisional 99.31
TIGR00911501 2A0308 L-type amino acid transporter. 99.3
TIGR00930 953 2a30 K-Cl cotransporter. 99.3
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.29
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.27
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.26
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.21
KOG3832319 consensus Predicted amino acid transporter [Genera 99.21
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.2
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.18
COG0531466 PotE Amino acid transporters [Amino acid transport 99.1
PRK15238496 inner membrane transporter YjeM; Provisional 98.99
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 98.97
TIGR00907482 2A0304 amino acid permease (GABA permease). 98.92
PF03845320 Spore_permease: Spore germination protein; InterPr 98.89
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.8
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.77
COG0833541 LysP Amino acid transporters [Amino acid transport 98.76
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.56
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.47
COG3949349 Uncharacterized membrane protein [Function unknown 98.43
PRK11375484 allantoin permease; Provisional 98.42
KOG1286554 consensus Amino acid transporters [Amino acid tran 98.39
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.36
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.31
PRK12488549 acetate permease; Provisional 98.29
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.2
TIGR00813407 sss transporter, SSS family. have different number 98.14
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.14
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.06
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 97.96
PRK11017404 codB cytosine permease; Provisional 97.93
COG1457442 CodB Purine-cytosine permease and related proteins 97.93
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.85
PRK09395551 actP acetate permease; Provisional 97.78
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.62
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.59
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.48
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.45
PRK15419502 proline:sodium symporter PutP; Provisional 97.43
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.4
COG4147529 DhlC Predicted symporter [General function predict 97.35
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.21
PRK00701439 manganese transport protein MntH; Reviewed 97.18
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.16
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 96.84
COG1966575 CstA Carbon starvation protein, predicted membrane 96.44
PRK15015 701 carbon starvation protein A; Provisional 96.43
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 96.16
PRK10484523 putative transporter; Provisional 96.14
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.7
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 95.14
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.83
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 94.82
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 93.93
KOG1288 945 consensus Amino acid transporters [Amino acid tran 93.25
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 93.14
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 92.8
PRK15433439 branched-chain amino acid transport system 2 carri 88.92
COG0814415 SdaC Amino acid permeases [Amino acid transport an 88.32
PRK15433439 branched-chain amino acid transport system 2 carri 86.94
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 86.22
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 85.37
COG0733439 Na+-dependent transporters of the SNF family [Gene 84.3
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 83.75
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.2e-59  Score=457.60  Aligned_cols=404  Identities=37%  Similarity=0.649  Sum_probs=360.6

Q ss_pred             CccccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458           23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV  102 (463)
Q Consensus        23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~  102 (463)
                      +++|++|++++.+|.+|.++|.|+|+||++++++||+.|++++++.++++.||..+|.+|.+..+...++ |+++|+|++
T Consensus        33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~-r~~~Y~dl~  111 (437)
T KOG1303|consen   33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK-RRYRYPDLG  111 (437)
T ss_pred             ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-cCCChHHHH
Confidence            4577789999999999999999999999999999999999999999999999999999999988888787 889999999


Q ss_pred             HHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccch
Q 012458          103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI  182 (463)
Q Consensus       103 ~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l  182 (463)
                      +++||+++++++...+.+.+||+|+.|++..+|++..+.+..|.+..      ..+.+.|+++++++.+|++++||++.+
T Consensus       112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l  185 (437)
T KOG1303|consen  112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSL  185 (437)
T ss_pred             HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchh
Confidence            99999999999999999999999999999999999999998776532      234678999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCc
Q 012458          183 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP  262 (463)
Q Consensus       183 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~  262 (463)
                      +++|..+.++.+.+..+.+..++..+......+...   ++..+....   ++++|++.|+|++|..+||||++||+|  
T Consensus       186 ~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~---~~~~~~~~~---f~a~g~iaFaf~gH~v~peIq~tMk~p--  257 (437)
T KOG1303|consen  186 SYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGY---LDLGTIPTV---FTALGIIAFAYGGHAVLPEIQHTMKSP--  257 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCc---ccCCCCcch---hhhhhheeeeecCCeeeeehHhhcCCc--
Confidence            999999999999988888777776655443222221   111111111   899999999999999999999999998  


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhccccchHHHHHH
Q 012458          263 ANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEK  342 (463)
Q Consensus       263 ~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~  342 (463)
                        ++|+|++..++.+++.+|+.+++.||++|||+++++++.|+.  ++.|+...+++++.+|++.+|+.+..|+.+.+|+
T Consensus       258 --~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~  333 (437)
T KOG1303|consen  258 --PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEK  333 (437)
T ss_pred             --hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHH
Confidence              679999999999999999999999999999999999999996  5899999999999999999999999999999999


Q ss_pred             HHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCchHHHHHHhhhhhhhhhHhhhhhHHHHHH
Q 012458          343 WICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQ  422 (463)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Ga~~~~~l~filP~l~~~~~  422 (463)
                      ....+.++  +         +    ++....|.+.|+.+++.++++|+.+|+|+++++++||....++.+++|+++|++.
T Consensus       334 ~~~~~~~~--~---------~----~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~  398 (437)
T KOG1303|consen  334 LIGVKHPD--F---------K----KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLI  398 (437)
T ss_pred             HhccCCcc--c---------c----ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            98754221  0         0    1344799999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 012458          423 MNIEAWTRKWVMLRVF-SYVCFIVSTFGLVGSIQGIISA  460 (463)
Q Consensus       423 ~~~~~~~~~~~~~~~~-~~~g~~~~v~g~~~si~~~~~~  460 (463)
                      +|.+++..+|+.++.+ .++|+++++....++++.++.|
T Consensus       399 ~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  399 KKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             hhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            9999999999999988 7999999999999999998764

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.68
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.55
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.31
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.79
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.15
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.84
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.68  E-value=1.3e-14  Score=146.46  Aligned_cols=366  Identities=10%  Similarity=0.008  Sum_probs=204.9

Q ss_pred             ccccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458           24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD  103 (463)
Q Consensus        24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~  103 (463)
                      ++|+.+.++..+..+++++|+|++.+|....+.|.. +++..++.++..........|...+. |+.|     ...+..+
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~-p~~G-----g~y~~~~   78 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLD-PSPG-----GSYAYAR   78 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHC-CCTT-----THHHHHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccC-CCCC-----CchhhHH
Confidence            456789999999999999999999999999888864 77888888888888888888866553 2223     5667779


Q ss_pred             HHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchh
Q 012458          104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ  183 (463)
Q Consensus       104 ~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~  183 (463)
                      +.+||....+......+........+....++.+..+++..     +    ..+....+.+ ...+++-....+..|...
T Consensus        79 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~-~~~~~~~~in~~g~~~~~  148 (445)
T 3l1l_A           79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----K----DPWVLTITCV-VVLWIFVLLNIVGPKMIT  148 (445)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----G----SHHHHHHHHH-HHHHHHHHHHHHCHHHHH
T ss_pred             hHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----c----ccHHHHHHHH-HHHHHHHHHHHhchHHHH
Confidence            99999999888888887777777777777666655433210     0    0011111111 111122222333444445


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCcc
Q 012458          184 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA  263 (463)
Q Consensus       184 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~  263 (463)
                      .++.+.....+...++   ..+.-....++... .+++. .+....+.++..++....|+|.+...+....+|+|||   
T Consensus       149 ~~~~~~~~~~i~~~~~---~~i~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---  220 (445)
T 3l1l_A          149 RVQAVATVLALIPIVG---IAVFGWFWFRGETY-MAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP---  220 (445)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHTTSTTCCCCCC-CCC------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH---
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHhChhhc-ccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---
Confidence            5544433333221111   11111111111100 01111 1112234567888999999999999999999999998   


Q ss_pred             ccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccc----cccccccccCChHHHHHHHHHHHHHHHhhhhccccchHHH
Q 012458          264 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPG----NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH  339 (463)
Q Consensus       264 ~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~----~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~  339 (463)
                      +|+.+|++..+..+..++|....+......+.+...    +...-+.....++...+..+...+..+.+.-.......+.
T Consensus       221 ~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~  300 (445)
T 3l1l_A          221 KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQT  300 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999888777666543211    1111111001234455556666666655554444444444


Q ss_pred             HHHHHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCC----chHHHHHHhhhhhhhhhHhhhh
Q 012458          340 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFP----YFNQVLGVIGGVIFWPLTIYFP  415 (463)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp----~~~~v~~l~Ga~~~~~l~filP  415 (463)
                      +...-.++.-. ++-.+.+         ++..+.+-++-...+...+.+....|    .++.+.++.+  .+..+.|.++
T Consensus       301 ~~~~a~dg~lP-~~~~~~~---------~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~  368 (445)
T 3l1l_A          301 AKAAADDGLFP-PIFARVN---------KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYT  368 (445)
T ss_dssp             HHHHHHTTSSC-GGGGCCC---------TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHH
T ss_pred             HHHHHhCCCCc-HHHHhcC---------CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            44332221100 1111100         11112332222222222222211222    3555655554  2347889999


Q ss_pred             hHHHHHHhccc
Q 012458          416 VEMYFKQMNIE  426 (463)
Q Consensus       416 ~l~~~~~~~~~  426 (463)
                      ++.+++.++++
T Consensus       369 ~~~~~~~r~~~  379 (445)
T 3l1l_A          369 CAALLLLGHGH  379 (445)
T ss_dssp             HHHHHHHHSSS
T ss_pred             HHHHHHHhhcC
Confidence            99999876544
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 89.71
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.71  E-value=8.2  Score=36.17  Aligned_cols=108  Identities=13%  Similarity=0.056  Sum_probs=60.9

Q ss_pred             chHHHHHHHHHhhccccch-hhHHHHHH-HhC---hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458           28 GTLWTAVAHIITGVIGSGV-LSLAWSMA-QLG---WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV  102 (463)
Q Consensus        28 ~s~~~a~~~l~~~~iG~Gi-L~LP~~f~-~~G---~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~  102 (463)
                      .|.++-++..++..+|.|- .-.||-.. +.|   +++=++.+++++.=..+-=..+-|..++.       ....+..+.
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g-------~i~~~~~i~   77 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQ-------GHGTTPAIF   77 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------TCCSHHHHH
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-------cccHHHHHH
Confidence            4556778888899999964 44899875 445   33334444444443333333344443331       445777777


Q ss_pred             HHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHh
Q 012458          103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQK  142 (463)
Q Consensus       103 ~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~  142 (463)
                      ....+.+....+.....+.++..++-|.+..+-.+..+.+
T Consensus        78 ~~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~  117 (509)
T d2a65a1          78 YLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIK  117 (509)
T ss_dssp             HHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766543333344455555556666677666666554443