Citrus Sinensis ID: 012486

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460--
MSPESRQSPPLEHVHATKRRRTLKFEQLDENDNQTKSQTATITETETLTWKPDQCRNPPTSNRFEPIRSSRNRYKRRKRKHKSVTDDHRQWTFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFANNGDGT
cccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccEEcccccccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHccccEEEEEEcccccccEEEEEEEcccEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEccccHHHHHcccccccccccccHHHHEEEEEEEEccccc
cccHHHcccccHcccccccccEEEEHEEEcccccccHHHHHHHHHHHccccccccccccHHHHccccccHHHHHHHHccccccccccccccEEcccccccccccEEEEEEHHHHHHHHccccHHcccccHHHHcHHHHHHHHHHHHHHccccEEEEEEHcHHHHHHHHHHHccccEEEEcccccccccEEEEEEcccEEEEEccEEEEHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHccccccccccHHHcccccccccccccccccccccccccccccEEEccccccccccccccccccEccccccccHcccccccccccccccccccccccccccEEEEEEEcccccEEcccccccHHHHHHcccccccccccccHHHHEEEEEccccccc
mspesrqspplehvhATKRRRTLkfeqldendnqtksQTATITetetltwkpdqcrnpptsnrfepirssrnrykrrkrkhksvtddhrqwtfssrdlskfkdkFVVVSYNILGvenalkhpdlydkvppkflKWERRKKLIREEMSSYNASILCLqevdhfddlddllqmdgfrgvykartgdandgcaIFWKEKLFTLLHQENiefqnfglRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHvlfnpnrgdiklGQIRLFLEKAYKLsqewggipvllagdlnsspnsALYQFLAsseldvcqhdrrhisgqfakcrdidfqkrnstsdwisisrpllyqWTDVELRLATGCEGVTELQHQLNLCSayfgipgshrtrdnlgeplatsyhskfMGTVDYIwhteelvpvrvletlpvnilrrngglpserwgsDHLALVCELAFANNGDGT
mspesrqspplehvhatkrrrtlkfeqldendnqtksqtatitetetltwkpdqcrnpptsnrfepirssrnrykrrkrkhksvtddhrqwtfssrdlskfkdKFVVVSYNILGvenalkhpdlydkvppkflKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHIsgqfakcrdidfqkrnstsdwisisrpLLYQWTDVELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFANNGDGT
MSPESRQSPPLEHVHATKRRRTLKFEQLDENDNQtksqtatitetetltWKPDQCRNPPTSNRFEPIrssrnrykrrkrkhksVTDDHRQWTFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNqsllesaeesslsmvsqsqslvvGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFANNGDGT
******************************************************************************************WTFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQ******************SLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFA******
********************************************************************************************************FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELD*CQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCEL**ANN****
**************HATKRRRTLKFEQLDENDNQTKSQTATITETETLTWKPDQCRNPPTSNRFEPIRSSR*****************RQWTFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSL**************SQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFANNGDGT
****SRQSPPLEHVHATKRRRTLKFEQLDENDNQTKSQTATITETETLTWKPDQCRNPPTSNRFEPIRSSRNRYKRRKRKHKSVTDDHRQWTFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFAN*****
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MSPESRQSPPLEHVHATKRRRTLKFEQLDENDNQTKSQTATITETETLTWKPDQCRNPPTSNRFEPIRSSRNRYKRRKRKHKSVTDDHRQWTFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFANNGDGT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query462 2.2.26 [Sep-21-2011]
Q0WKY2454 Carbon catabolite repress yes no 0.969 0.986 0.569 1e-139
Q9LS39448 Carbon catabolite repress no no 0.770 0.794 0.481 2e-95
Q8VYU4 754 Carbon catabolite repress no no 0.536 0.328 0.424 5e-54
Q5RGT6569 Protein angel homolog 2 O yes no 0.746 0.606 0.326 8e-34
A6H7I3544 Protein angel homolog 2 O yes no 0.722 0.613 0.309 2e-29
Q5VTE6544 Protein angel homolog 2 O yes no 0.774 0.658 0.297 2e-28
Q8VCU0667 Protein angel homolog 1 O yes no 0.458 0.317 0.371 3e-28
B2RYM0667 Protein angel homolog 1 O yes no 0.458 0.317 0.371 4e-28
Q9UNK9670 Protein angel homolog 1 O no no 0.458 0.316 0.366 8e-28
Q8K1C0544 Protein angel homolog 2 O no no 0.764 0.648 0.285 2e-27
>sp|Q0WKY2|CCR4E_ARATH Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana GN=CCR4-5 PE=2 SV=2 Back     alignment and function desciption
 Score =  495 bits (1275), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/462 (56%), Positives = 330/462 (71%), Gaps = 14/462 (3%)

Query: 1   MSPESRQSPPLEHVHATKRRRTLKFEQLDENDNQTKSQTATITETETLTWKPDQCRNPPT 60
           MS   R++     +  TKR+R    EQ  EN  +  ++       E++T KP +   P  
Sbjct: 1   MSGYERKNTTANSITITKRKRNSISEQ-SENVYEKSNRK------ESITLKPHRSFTPGF 53

Query: 61  SNR-FEPIRSSRNRYKRRKR-KHKSVTDDHRQWTFSSRDLSKFKDKFVVVSYNILGVENA 118
           S R  +P+R S++  +RR+R K K  +   R+W FS+ +     DK V+VSYN+LGV+NA
Sbjct: 54  SQRDCKPVRHSKSSLRRRRRTKEKISSSVEREWVFSANNFENLADKLVLVSYNLLGVDNA 113

Query: 119 LKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVY 178
             H DLY  VP K L+W RRK LI +E+S YNASILCLQEVD FDDLD LL+  GFRGV+
Sbjct: 114 SNHMDLYYNVPRKHLEWSRRKHLICKEISRYNASILCLQEVDRFDDLDVLLKNRGFRGVH 173

Query: 179 KARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSL 238
           K+RTG+A+DGCAIFWKE LF LL  ++IEF  FG+R+NVAQLCVL+MN    E   +S L
Sbjct: 174 KSRTGEASDGCAIFWKENLFELLDHQHIEFDKFGMRNNVAQLCVLEMN---CEEDPKSKL 230

Query: 239 SM-VSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSP 297
            +  S  + LVVGNIHVLFNP RGDIKLGQ+RLFLEKAYKLSQEWG IPV +AGDLNS+P
Sbjct: 231 RVRSSDPRRLVVGNIHVLFNPKRGDIKLGQVRLFLEKAYKLSQEWGNIPVAIAGDLNSTP 290

Query: 298 NSALYQFLASSELDVCQHDRRHISGQF-AKCRDIDFQKRNSTSDWISISRPLLYQWTDVE 356
            SA+Y F+AS++LD   HDRR ISGQ   + ++  F+   + S   SIS  LL +W+  E
Sbjct: 291 QSAIYDFIASADLDTQLHDRRQISGQTEVEPKERSFRNHYAFSASASISGSLLNEWSQEE 350

Query: 357 LRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEE 416
           L+LATG +  T +QHQL L SAY G+PG++RTRD  GEPLAT+YHS+F+GTVDYIWHT+E
Sbjct: 351 LQLATGGQETTHVQHQLKLNSAYSGVPGTYRTRDQRGEPLATTYHSRFLGTVDYIWHTKE 410

Query: 417 LVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFANN 458
           LVPVRVLETLP ++LRR GGLPSE WGSDHLA+ CEL F N+
Sbjct: 411 LVPVRVLETLPADVLRRTGGLPSENWGSDHLAIACELGFVND 452
Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: 4
>sp|Q9LS39|CCR4C_ARATH Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis thaliana GN=CCR4-3 PE=2 SV=2 Back     alignment and function description
>sp|Q8VYU4|CCR4F_ARATH Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana GN=CCR4-6 PE=2 SV=2 Back     alignment and function description
>sp|Q5RGT6|ANGE2_DANRE Protein angel homolog 2 OS=Danio rerio GN=angel2 PE=2 SV=1 Back     alignment and function description
>sp|A6H7I3|ANGE2_BOVIN Protein angel homolog 2 OS=Bos taurus GN=ANGEL2 PE=2 SV=1 Back     alignment and function description
>sp|Q5VTE6|ANGE2_HUMAN Protein angel homolog 2 OS=Homo sapiens GN=ANGEL2 PE=2 SV=1 Back     alignment and function description
>sp|Q8VCU0|ANGE1_MOUSE Protein angel homolog 1 OS=Mus musculus GN=Angel1 PE=2 SV=2 Back     alignment and function description
>sp|B2RYM0|ANGE1_RAT Protein angel homolog 1 OS=Rattus norvegicus GN=Angel1 PE=2 SV=2 Back     alignment and function description
>sp|Q9UNK9|ANGE1_HUMAN Protein angel homolog 1 OS=Homo sapiens GN=ANGEL1 PE=2 SV=1 Back     alignment and function description
>sp|Q8K1C0|ANGE2_MOUSE Protein angel homolog 2 OS=Mus musculus GN=Angel2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query462
255585432447 conserved hypothetical protein [Ricinus 0.956 0.988 0.619 1e-156
356549563405 PREDICTED: carbon catabolite repressor p 0.803 0.916 0.659 1e-145
449477462462 PREDICTED: carbon catabolite repressor p 0.911 0.911 0.599 1e-144
42570103454 carbon catabolite repressor protein 4-li 0.969 0.986 0.569 1e-137
449441143451 PREDICTED: carbon catabolite repressor p 0.893 0.915 0.572 1e-136
297839261453 endonuclease/exonuclease/phosphatase fam 0.883 0.900 0.590 1e-134
356522755418 PREDICTED: LOW QUALITY PROTEIN: carbon c 0.727 0.803 0.651 1e-126
297734177441 unnamed protein product [Vitis vinifera] 0.757 0.793 0.505 3e-96
334185440449 carbon catabolite repressor protein 4-li 0.772 0.795 0.481 3e-94
297830504435 hypothetical protein ARALYDRAFT_898218 [ 0.833 0.885 0.471 4e-94
>gi|255585432|ref|XP_002533410.1| conserved hypothetical protein [Ricinus communis] gi|223526739|gb|EEF28968.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 283/457 (61%), Positives = 343/457 (75%), Gaps = 15/457 (3%)

Query: 4   ESRQSPPLEHVHATKRRRTLKFEQLDENDNQTKSQTATITETETLTWKPDQCRNPPTSNR 63
           E+R+  P    H   +R+ L  + +  ++     +   + +T+TLT  P    N PTSNR
Sbjct: 3   ENRKRGPSRTHHTHAKRKHLDDDTVGHDNKIDTKKPNLVPKTKTLTVYP----NLPTSNR 58

Query: 64  FEPIRSSRNRYKRRKRKHKSVTDDHRQWTFSSRDLSKFKDKFVVVSYNILGVENALKHPD 123
           F       N Y     K+ S  + +R+W FS  D S +KD+ VVVSYNILGVENA  HPD
Sbjct: 59  F-----LTNNYVS---KNSSTAECNRRWVFSDNDFSAYKDRVVVVSYNILGVENASNHPD 110

Query: 124 LYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKARTG 183
           LY K+PPKFL W+RRK+LI EE++ YNA ILC QEVD FDDLD LLQ D FRGVYKARTG
Sbjct: 111 LYFKIPPKFLDWDRRKELICEEINHYNAGILCFQEVDRFDDLDCLLQEDSFRGVYKARTG 170

Query: 184 DANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQ 243
           +A DGCAIFWK+ LF+LLH+ENIEFQ+FGLR+NVAQLCVLKMN+S  +S +    S  S+
Sbjct: 171 EACDGCAIFWKDMLFSLLHEENIEFQSFGLRNNVAQLCVLKMNESQSKSDQFMQSSETSK 230

Query: 244 SQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQ 303
           S+  VVGN+HVLFNP RGDIKLGQ+RLFLE+AYKLSQEWGGIPV+L GDLNS P SA+YQ
Sbjct: 231 SRRFVVGNVHVLFNPKRGDIKLGQVRLFLERAYKLSQEWGGIPVVLGGDLNSLPQSAVYQ 290

Query: 304 FLASSELDVCQHDRRHISGQFAKCRDIDF---QKRNSTSDWISISRPLLYQWTDVELRLA 360
           FLASSEL++  HDRR+ISGQ       ++   Q +N+ S+  SISRP ++ W D E+ LA
Sbjct: 291 FLASSELNILVHDRRNISGQLDHLPQHEYFKSQNKNAESNHRSISRPSIHTWNDEEVSLA 350

Query: 361 TGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPV 420
           TG +GVT L HQL L SAY G+PGS RTRDN GEPLATSYHS FMGTVDYIWHT+EL+PV
Sbjct: 351 TGRKGVTHLCHQLKLGSAYHGVPGSRRTRDNHGEPLATSYHSMFMGTVDYIWHTQELIPV 410

Query: 421 RVLETLPVNILRRNGGLPSERWGSDHLALVCELAFAN 457
           RVLETLP++ILRR+ GLP+E+WGSDHLALVCELAFA+
Sbjct: 411 RVLETLPIDILRRSAGLPNEKWGSDHLALVCELAFAD 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356549563|ref|XP_003543162.1| PREDICTED: carbon catabolite repressor protein 4 homolog 5-like [Glycine max] Back     alignment and taxonomy information
>gi|449477462|ref|XP_004155030.1| PREDICTED: carbon catabolite repressor protein 4 homolog 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42570103|ref|NP_683491.2| carbon catabolite repressor protein 4-like 5 [Arabidopsis thaliana] gi|215275263|sp|Q0WKY2.2|CCR4E_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 5; Short=CCR4 homolog 5 gi|332197398|gb|AEE35519.1| carbon catabolite repressor protein 4-like 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449441143|ref|XP_004138343.1| PREDICTED: carbon catabolite repressor protein 4 homolog 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297839261|ref|XP_002887512.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis lyrata subsp. lyrata] gi|297333353|gb|EFH63771.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356522755|ref|XP_003530011.1| PREDICTED: LOW QUALITY PROTEIN: carbon catabolite repressor protein 4 homolog 5-like [Glycine max] Back     alignment and taxonomy information
>gi|297734177|emb|CBI15424.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|334185440|ref|NP_001189925.1| carbon catabolite repressor protein 4-like 3 [Arabidopsis thaliana] gi|332642586|gb|AEE76107.1| carbon catabolite repressor protein 4-like 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297830504|ref|XP_002883134.1| hypothetical protein ARALYDRAFT_898218 [Arabidopsis lyrata subsp. lyrata] gi|297328974|gb|EFH59393.1| hypothetical protein ARALYDRAFT_898218 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query462
TAIR|locus:504956231454 AT1G73875 "AT1G73875" [Arabido 0.971 0.988 0.535 2.4e-122
TAIR|locus:2832132 754 AT5G11350 "AT5G11350" [Arabido 0.512 0.314 0.422 2.5e-74
ZFIN|ZDB-GENE-030131-6498569 angel2 "angel homolog 2 (Droso 0.725 0.588 0.322 3.7e-31
FB|FBgn0016762354 angel "angel" [Drosophila mela 0.465 0.607 0.316 1.9e-26
MGI|MGI:1915987667 Angel1 "angel homolog 1 (Droso 0.458 0.317 0.344 6.6e-26
TAIR|locus:2076446603 AT3G58580 "AT3G58580" [Arabido 0.218 0.167 0.382 9.2e-26
TAIR|locus:2076426602 AT3G58560 "AT3G58560" [Arabido 0.216 0.166 0.379 1e-23
MGI|MGI:1196310544 Angel2 "angel homolog 2 (Droso 0.632 0.536 0.304 1.9e-23
MGI|MGI:2443226608 Pde12 "phosphodiesterase 12" [ 0.502 0.381 0.287 1.8e-22
UNIPROTKB|F1SGK9609 PDE12 "Uncharacterized protein 0.502 0.380 0.280 7.2e-21
TAIR|locus:504956231 AT1G73875 "AT1G73875" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
 Identities = 247/461 (53%), Positives = 304/461 (65%)

Query:     1 MSPESRQSPPLEHVHATKRRRTLKFEQLDENDNQXXXXXXXXXXXXXXXWKPDQCRNPPT 60
             MS   R++     +  TKR+R    EQ  EN  +                KP +   P  
Sbjct:     1 MSGYERKNTTANSITITKRKRNSISEQ-SENVYEKSNRKESITL------KPHRSFTPGF 53

Query:    61 SNR-FEPIXXXXXXXXXXXXXXXXVTDD-HRQWTFSSRDLSKFKDKFVVVSYNILGVENA 118
             S R  +P+                ++    R+W FS+ +     DK V+VSYN+LGV+NA
Sbjct:    54 SQRDCKPVRHSKSSLRRRRRTKEKISSSVEREWVFSANNFENLADKLVLVSYNLLGVDNA 113

Query:   119 LKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVY 178
               H DLY  VP K L+W RRK LI +E+S YNASILCLQEVD FDDLD LL+  GFRGV+
Sbjct:   114 SNHMDLYYNVPRKHLEWSRRKHLICKEISRYNASILCLQEVDRFDDLDVLLKNRGFRGVH 173

Query:   179 KARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNXXXXXXXXXXXX 238
             K+RTG+A+DGCAIFWKE LF LL  ++IEF  FG+R+NVAQLCVL+MN            
Sbjct:   174 KSRTGEASDGCAIFWKENLFELLDHQHIEFDKFGMRNNVAQLCVLEMNCEEDPKSKLRVR 233

Query:   239 XXXXXXXXXXXGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPN 298
                        GNIHVLFNP RGDIKLGQ+RLFLEKAYKLSQEWG IPV +AGDLNS+P 
Sbjct:   234 SSDPRRLVV--GNIHVLFNPKRGDIKLGQVRLFLEKAYKLSQEWGNIPVAIAGDLNSTPQ 291

Query:   299 SALYQFLASSELDVCQHDRRHISGQF-AKCRDIDFQKRNSTSDWISISRPLLYQWTDVEL 357
             SA+Y F+AS++LD   HDRR ISGQ   + ++  F+   + S   SIS  LL +W+  EL
Sbjct:   292 SAIYDFIASADLDTQLHDRRQISGQTEVEPKERSFRNHYAFSASASISGSLLNEWSQEEL 351

Query:   358 RLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEEL 417
             +LATG +  T +QHQL L SAY G+PG++RTRD  GEPLAT+YHS+F+GTVDYIWHT+EL
Sbjct:   352 QLATGGQETTHVQHQLKLNSAYSGVPGTYRTRDQRGEPLATTYHSRFLGTVDYIWHTKEL 411

Query:   418 VPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFANN 458
             VPVRVLETLP ++LRR GGLPSE WGSDHLA+ CEL F N+
Sbjct:   412 VPVRVLETLPADVLRRTGGLPSENWGSDHLAIACELGFVND 452
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2832132 AT5G11350 "AT5G11350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6498 angel2 "angel homolog 2 (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0016762 angel "angel" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1915987 Angel1 "angel homolog 1 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2076446 AT3G58580 "AT3G58580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076426 AT3G58560 "AT3G58560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1196310 Angel2 "angel homolog 2 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:2443226 Pde12 "phosphodiesterase 12" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGK9 PDE12 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0WKY2CCR4E_ARATH3, ., 1, ., 1, 3, ., 40.56920.96960.9867yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.13.40.946
3rd Layer3.1.130.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
cd09097329 cd09097, Deadenylase_CCR4, C-terminal deadenylase 5e-52
PLN03144606 PLN03144, PLN03144, Carbon catabolite repressor pr 2e-44
cd10313350 cd10313, Deadenylase_CCR4a, C-terminal deadenylase 6e-25
COG5239378 COG5239, CCR4, mRNA deadenylase, exonuclease subun 3e-24
cd09096280 cd09096, Deadenylase_nocturnin, C-terminal deadeny 2e-21
cd10312348 cd10312, Deadenylase_CCR4b, C-terminal deadenylase 3e-21
cd09082348 cd09082, Deadenylase, C-terminal deadenylase domai 3e-17
cd09083252 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphata 2e-08
cd08372241 cd08372, EEP, Exonuclease-Endonuclease-Phosphatase 7e-08
cd09084246 cd09084, EEP-2, Exonuclease-Endonuclease-Phosphata 7e-06
cd09096280 cd09096, Deadenylase_nocturnin, C-terminal deadeny 6e-05
COG3568259 COG3568, ElsH, Metal-dependent hydrolase [General 6e-04
cd09083252 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphata 0.002
>gnl|CDD|197331 cd09097, Deadenylase_CCR4, C-terminal deadenylase domain of CCR4 and related domains Back     alignment and domain information 
 Score =  177 bits (452), Expect = 5e-52
 Identities = 104/388 (26%), Positives = 167/388 (43%), Gaps = 98/388 (25%)

Query: 107 VVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEV--DHFDD 164
           V+ YN+L  + A +    Y   P   L W+ RK+ I +E+ SYNA ILCLQEV  D ++D
Sbjct: 1   VMCYNVLCDKYATR--QQYGYCPSWALNWDYRKQNILKEILSYNADILCLQEVETDQYED 58

Query: 165 L-DDLLQMDGFRGVYKART-----GDAN----DGCAIFWKEKLFTLLHQENIEFQNFGLR 214
                L+  G+ GV+K ++      +A     DGCAIF+K   F L+ +  IEF    + 
Sbjct: 59  FFLPELKQHGYDGVFKPKSRAKTMSEAERKHVDGCAIFFKTSKFKLVEKHLIEFNQLAMA 118

Query: 215 H-----------------NVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFN 257
           +                 N+A + VL+  ++  E  +          Q L+V N H+ ++
Sbjct: 119 NADAEGSEDMLNRVMTKDNIALIVVLEARETSYEGNK---------GQLLIVANTHIHWD 169

Query: 258 PNRGDIKLGQIRLFLEKAYKLSQEW--------GGIPVLLAGDLNSSPNSALYQFLASSE 309
           P   D+KL Q  + LE+  K+++++          IP+++ GD NS P+S +Y+ L++  
Sbjct: 170 PEFSDVKLVQTMMLLEELEKIAEKFSRYPYEDSADIPLVVCGDFNSLPDSGVYELLSNGS 229

Query: 310 LDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGCEGVTEL 369
           +                    DF+      D                          + L
Sbjct: 230 VS---------------PNHPDFK-----EDPYGEYLT------------------ASGL 251

Query: 370 QHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEE-LVPVRVLETL-P 427
            H   L SAY           NLGE   T+Y   F G +DYI+++ + L  + +L     
Sbjct: 252 THSFKLKSAY----------ANLGELPFTNYTPDFKGVIDYIFYSADTLSVLGLLGPPDE 301

Query: 428 VNILRRNGGLPSERWGSDHLALVCELAF 455
              L +  GLP+  + SDH+AL+ E   
Sbjct: 302 DWYLNKVVGLPNPHFPSDHIALLAEFRI 329

This subfamily contains the C-terminal catalytic domain of the deadenylases, Saccharomyces cerevisiae Ccr4p and two vertebrate homologs (CCR4a and CCR4b), and related domains. CCR4 belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. CCR4 is the major deadenylase subunit of the CCR4-NOT transcription complex, which contains two deadenylase subunits and several noncatalytic subunits. The other deadenylase subunit, Caf1 (called Pop2 in yeast), is a DEDD-type protein and does not belong in this superfamily. Saccharomyces cerevisiae CCR4 (or Ccr4p) is a 3'-5' poly(A) RNA and ssDNA exonuclease. It is the catalytic subunit of the yeast mRNA deadenylase (Ccr4p/Pop2p/Not complex). This complex participates in various ways in mRNA metabolism, including transcription initiation and elongation, and mRNA degradation. Ccr4p degrades both poly(A) and single-stranded DNA. There are two vertebrate homologs of Ccr4p, CCR4a (also called CCR4-NOT transcription complex subunit 6 or CNOT6) and CCR4b (also called CNOT6-like or CNOT6L), which independently associate with other components to form distinct CCR4-NOT multisubunit complexes. The nuclease domain of CNOT6 and CNOT6L exhibits Mg2+-dependent deadenylase activity, with specificity for poly (A) RNA as substrate. CCR4a is a component of P-bodies and is necessary for foci formation. CCR4b regulates p27/Kip1 mRNA levels, thereby influencing cell cycle progression. They both contribute to the prevention of cell death by regulating insulin-like growth factor-binding protein 5. Length = 329
>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information
>gnl|CDD|197340 cd10313, Deadenylase_CCR4a, C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6 Back     alignment and domain information
>gnl|CDD|227564 COG5239, CCR4, mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|197330 cd09096, Deadenylase_nocturnin, C-terminal deadenylase domain of nocturnin and related domains Back     alignment and domain information
>gnl|CDD|197339 cd10312, Deadenylase_CCR4b, C-terminal deadenylase domain of CCR4b, also known as CCR4-NOT transcription complex subunit 6-like Back     alignment and domain information
>gnl|CDD|197316 cd09082, Deadenylase, C-terminal deadenylase domain of CCR4, nocturnin, and related domains Back     alignment and domain information
>gnl|CDD|197317 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1 Back     alignment and domain information
>gnl|CDD|197306 cd08372, EEP, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily Back     alignment and domain information
>gnl|CDD|197318 cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2 Back     alignment and domain information
>gnl|CDD|197330 cd09096, Deadenylase_nocturnin, C-terminal deadenylase domain of nocturnin and related domains Back     alignment and domain information
>gnl|CDD|226098 COG3568, ElsH, Metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>gnl|CDD|197317 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 462
PLN03144606 Carbon catabolite repressor protein 4 homolog; Pro 100.0
KOG2338495 consensus Transcriptional effector CCR4-related pr 100.0
COG5239378 CCR4 mRNA deadenylase, exonuclease subunit and rel 100.0
KOG0620361 consensus Glucose-repressible alcohol dehydrogenas 100.0
PRK11756268 exonuclease III; Provisional 99.94
TIGR03395283 sphingomy sphingomyelin phosphodiesterase. Members 99.93
COG3568259 ElsH Metal-dependent hydrolase [General function p 99.91
PRK05421263 hypothetical protein; Provisional 99.9
COG0708261 XthA Exonuclease III [DNA replication, recombinati 99.89
TIGR00195254 exoDNase_III exodeoxyribonuclease III. The model b 99.88
PTZ00297 1452 pantothenate kinase; Provisional 99.86
TIGR00633255 xth exodeoxyribonuclease III (xth). This family is 99.86
PRK13911250 exodeoxyribonuclease III; Provisional 99.82
KOG3873422 consensus Sphingomyelinase family protein [Signal 99.82
smart00476276 DNaseIc deoxyribonuclease I. Deoxyribonuclease I c 99.81
PF03372249 Exo_endo_phos: Endonuclease/Exonuclease/phosphatas 99.74
KOG2756349 consensus Predicted Mg2+-dependent phosphodiestera 99.72
PRK15251271 cytolethal distending toxin subunit CdtB; Provisio 99.64
COG3021309 Uncharacterized protein conserved in bacteria [Fun 99.55
COG2374798 Predicted extracellular nuclease [General function 99.49
smart00128310 IPPc Inositol polyphosphate phosphatase, catalytic 98.96
KOG0566 1080 consensus Inositol-1,4,5-triphosphate 5-phosphatas 98.37
PF14529119 Exo_endo_phos_2: Endonuclease-reverse transcriptas 97.86
PLN03191621 Type I inositol-1,4,5-trisphosphate 5-phosphatase 97.22
KOG1294335 consensus Apurinic/apyrimidinic endonuclease and r 97.17
COG5239378 CCR4 mRNA deadenylase, exonuclease subunit and rel 96.44
COG5411460 Phosphatidylinositol 5-phosphate phosphatase [Sign 96.1
PTZ00312356 inositol-1,4,5-triphosphate 5-phosphatase; Provisi 93.48
KOG1976391 consensus Inositol polyphosphate 5-phosphatase, ty 91.29
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.3e-62  Score=512.49  Aligned_cols=329  Identities=35%  Similarity=0.558  Sum_probs=259.7

Q ss_pred             CCCCCCCceEEcCCC----------CCCCCCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCc
Q 012486           83 SVTDDHRQWTFSSRD----------LSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNAS  152 (462)
Q Consensus        83 ~~~~~~R~w~~~~~~----------~~~~~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pD  152 (462)
                      .+.+..|.|+.....          .......|||||||||++.|+.  .++|+||+++.++|++|+++|+++|..++||
T Consensus       223 ~p~p~~R~~~~~~~~~~~~~~~~~~~~~~~~~frVmSYNILAd~ya~--~dly~ycp~~aL~W~yRk~lIl~EI~~~~aD  300 (606)
T PLN03144        223 APSPTPRRLIQVNGLDGMGHLDLDGRTSSAGTFTVLSYNILSDLYAT--SDMYSYCPPWALSWTYRRQNLLREIVGYRAD  300 (606)
T ss_pred             CCCCCCcceEEecccccccccccccccCCCCCEEEEEeeeccccccC--cccccCCCccccCHHHHHHHHHHHHHhcCCC
Confidence            445677999987641          1134678999999999999885  5799999999999999999999999999999


Q ss_pred             eEeeeccc--ChHh-HHHHHhhCCceEEEecCCCC-------CCceeEEEEccCCceeeeeeeeeecccC----------
Q 012486          153 ILCLQEVD--HFDD-LDDLLQMDGFRGVYKARTGD-------ANDGCAIFWKEKLFTLLHQENIEFQNFG----------  212 (462)
Q Consensus       153 IIcLQEvd--~~~~-l~~~L~~~gY~~~~~~~~~~-------~~~G~aI~~r~srf~l~~~~~i~~~~~~----------  212 (462)
                      |||||||+  +|++ |.+.|.++||.++|..+++.       ..+|||||||++||++++...++|+...          
T Consensus       301 IICLQEV~~~~~~d~~~p~L~~~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s  380 (606)
T PLN03144        301 ILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPS  380 (606)
T ss_pred             EEEEeecCHHHHHHHHHhhhhhcCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCcccccc
Confidence            99999995  4665 47899999999999877542       5899999999999999999888775421          


Q ss_pred             ----------CCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhc
Q 012486          213 ----------LRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEW  282 (462)
Q Consensus       213 ----------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~  282 (462)
                                .++|++++++|+......      .......++.|+|+||||+|+|..+++|+.|++.|++.++++... 
T Consensus       381 ~~~~~~l~Rl~kdNVAliv~Le~k~~~~------~~~~~~~~~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~~~-  453 (606)
T PLN03144        381 AQKKAALNRLLKDNVALIVVLEAKFGNQ------GADNGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLEKIAAS-  453 (606)
T ss_pred             ccchhhhhhhccCcEEEEEEEEEecccc------cccCCCCccEEEEEEeeeccCCccchhHHHHHHHHHHHHHHHhhc-
Confidence                      245688888887542100      000012356899999999999999999999999999999988643 


Q ss_pred             CCCCEEEcccCCCCCCchhHHHHhcCCccccccccccccccccccccccccccCCCccccccccCcccccchhhHhhhcC
Q 012486          283 GGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATG  362 (462)
Q Consensus       283 ~~~pvIl~GDFNs~P~s~~y~~L~~~~l~~~~~d~~~isgq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g  362 (462)
                      .+.|+|||||||+.|+|++|++|++|.++....|.             ..             .+ ...+.         
T Consensus       454 ~~~PvIlcGDFNS~P~S~vy~lLt~G~v~~~h~d~-------------~~-------------~~-~~~~~---------  497 (606)
T PLN03144        454 ADIPMLVCGDFNSVPGSAPHCLLATGKVDPLHPDL-------------AV-------------DP-LGILR---------  497 (606)
T ss_pred             CCCceEEeccCCCCCCChhhhhhhcCCcCCCchhh-------------cc-------------Cc-ccccc---------
Confidence            47899999999999999999999999875532211             00             00 00000         


Q ss_pred             CCcccccccCCCcccccCCC---CCCCC------CC-C-CCCCCccccccCCCCcceeEEEEeCC-ceeeeeccCCChhh
Q 012486          363 CEGVTELQHQLNLCSAYFGI---PGSHR------TR-D-NLGEPLATSYHSKFMGTVDYIWHTEE-LVPVRVLETLPVNI  430 (462)
Q Consensus       363 ~~~~~~~~h~~~l~saY~~~---~~~~~------~~-~-~~~ep~fT~~~~~f~~~LDYIf~s~~-l~~v~~l~~~~~~~  430 (462)
                        ....+.|+++|.|||..+   .|...      .| | ..+||.||||+.+|.+|||||||+++ +.+.++|+.++.++
T Consensus       498 --~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~~r~~~~~geP~fTNyt~~F~gtlDYIfys~~~L~v~~vL~lp~e~~  575 (606)
T PLN03144        498 --PASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRRMDPATNEPLFTNCTRDFIGTLDYIFYTADSLTVESLLELLDEES  575 (606)
T ss_pred             --ccccccCCCcccchhhhhccccccccchhhhhhccccccCCCCceeecCCcceeEEEEEEcCCCceEEeecCCCCHHH
Confidence              023578999999999876   22110      01 1 25799999999999999999999974 67778999988899


Q ss_pred             hccCCCCCCCCCCCcchhhccEEEEEeC
Q 012486          431 LRRNGGLPSERWGSDHLALVCELAFANN  458 (462)
Q Consensus       431 ~~~~~~lPn~~~pSDHlpl~a~f~~~~~  458 (462)
                      +....||||..||||||||+|+|+|++.
T Consensus       576 l~~~~gLPn~~~PSDHI~L~AeF~~~~~  603 (606)
T PLN03144        576 LRKDTALPSPEWSSDHIALLAEFRCKPR  603 (606)
T ss_pred             hcccCCCCCCCCCCccccEeEEEEeccC
Confidence            9888999999999999999999999874

>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription] Back     alignment and domain information
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription] Back     alignment and domain information
>PRK11756 exonuclease III; Provisional Back     alignment and domain information
>TIGR03395 sphingomy sphingomyelin phosphodiesterase Back     alignment and domain information
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>PRK05421 hypothetical protein; Provisional Back     alignment and domain information
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00195 exoDNase_III exodeoxyribonuclease III Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>TIGR00633 xth exodeoxyribonuclease III (xth) Back     alignment and domain information
>PRK13911 exodeoxyribonuclease III; Provisional Back     alignment and domain information
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms] Back     alignment and domain information
>smart00476 DNaseIc deoxyribonuclease I Back     alignment and domain information
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling [] Back     alignment and domain information
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms] Back     alignment and domain information
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional Back     alignment and domain information
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG2374 Predicted extracellular nuclease [General function prediction only] Back     alignment and domain information
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues Back     alignment and domain information
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B Back     alignment and domain information
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional Back     alignment and domain information
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair] Back     alignment and domain information
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional Back     alignment and domain information
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
4b8c_D727 Nuclease Module Of The Yeast Ccr4-Not Complex Lengt 4e-20
3ngq_A398 Crystal Structure Of The Human Cnot6l Nuclease Doma 2e-16
3ngn_A398 Crystal Structure Of The Human Cnot6l Nuclease Doma 4e-16
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727 Back     alignment and structure 
Iteration: 1

 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 153/385 (39%), Gaps = 76/385 (19%)
Query: 102 KDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH 161
           K  F V+SYN L    A   P +Y   P   L W+ R+  ++E++ SY++ +LCLQEV+ 
Sbjct: 392 KRTFTVLSYNTLCQHYAT--PKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVES 449
Query: 162 --FDDL-DDLLQMDGFRGVYKART---------GDANDGCAIFWKEKLFTLLHQENIEFQ 209
             F++    LL   G+ G++ A+              DGC IF+K   F L+ ++ ++F 
Sbjct: 450 KTFEEYWVPLLDKHGYTGIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFS 509
Query: 210 NFGLRHNVAQLCVLKMNXXXXXXXXXXXXXXXXXXXXXXXGNI--HVLFNPNRGDIKLGQ 267
              ++H   Q     +N                         +  H+ ++P   D+K  Q
Sbjct: 510 GAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQHIPSGDTIWAVTTHLHWDPKFNDVKTFQ 569
Query: 268 IRLFL---------EKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRR 318
           + + L         E ++   Q+    PVL+ GD NS  NSA+Y+ + +  + + Q    
Sbjct: 570 VGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYELINTGRVQIHQE--- 626
Query: 319 HISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGCEGVTELQHQLNLCSA 378
                    RD  +    + S                               H L L S+
Sbjct: 627 ------GNGRDFGYMSEKNFS-------------------------------HNLALKSS 649
Query: 379 YFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVR-VLETLPVNILRRNGGL 437
           Y          + +GE   T++   F   +DYIW +   + VR +L  +    + +  G 
Sbjct: 650 Y----------NCIGELPFTNFTPSFTDVIDYIWFSTHALRVRGLLGEVDPEYVSKFIGF 699
Query: 438 PSERWGSDHLALVCELAFANNGDGT 462
           P++++ SDH+ L+    F     G+
Sbjct: 700 PNDKFPSDHIPLLARFEFMKTNTGS 724
>pdb|3NGQ|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain Length = 398 Back     alignment and structure
>pdb|3NGN|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain In Complex With Amp Length = 398 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 2e-60
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 7e-28
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 3e-26
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 1e-24
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 3e-09
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 5e-09
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 1e-08
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 5e-06
2j63_A467 AP-endonuclease; base excision repair, lyase; 2.48 2e-04
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Length = 398 Back     alignment and structure
 Score =  201 bits (512), Expect = 2e-60
 Identities = 94/409 (22%), Positives = 158/409 (38%), Gaps = 84/409 (20%)

Query: 89  RQW-TFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
           R W T   RD       F V+ YN+L   +      LY   P   L WE RKK I EE+ 
Sbjct: 15  RPWITLKERDQILPSASFTVMCYNVLC--DKYATRQLYGYCPSWALNWEYRKKGIMEEIV 72

Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVYKARTG---------DANDGCAIFWKE 195
           + +A I+ LQEV+   +F      L+  G+ G +  ++             DGCAIF+K 
Sbjct: 73  NCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKT 132

Query: 196 KLFTLLHQENIEFQNFGL---------------RHNVAQLCVLKMNQSLLESAEESSLSM 240
           + FTL+ +  +EF    +               + N+    VL++++ L  +  +   + 
Sbjct: 133 EKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHA- 191

Query: 241 VSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEW-----------GGIPVLL 289
            +  Q L+V N H+ ++P   D+KL Q  +F+ +   + ++              IP++L
Sbjct: 192 -ADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVL 250

Query: 290 AGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLL 349
             DLNS P+S + ++L++  +     D + +                             
Sbjct: 251 CADLNSLPDSGVVEYLSNGGVADNHKDFKELR---------------------------Y 283

Query: 350 YQWTDVELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVD 409
            +                 + H   L SAY                  T+Y   F G +D
Sbjct: 284 NECLMNFSCNGKNGSSEGRITHGFQLKSAYEN-----------NLMPYTNYTFDFKGVID 332

Query: 410 YIWHTEE-LVPVRVLETLPVNILRRN--GGLPSERWGSDHLALVCELAF 455
           YI++++  +    VL  L    L  N   G P     SDH +L+ +L  
Sbjct: 333 YIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLEL 381
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Length = 298 Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Length = 267 Back     alignment and structure
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Length = 257 Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Length = 317 Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Length = 301 Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Length = 306 Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Length = 266 Back     alignment and structure
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query462
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 100.0
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 100.0
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 100.0
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 100.0
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 99.97
4gz1_A256 Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl 99.97
4fva_A256 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.97
4f1h_A250 Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com 99.97
4gew_A362 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.97
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 99.96
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 99.96
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 99.94
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 99.93
2jc4_A256 Exodeoxyribonuclease III; hydrolase, repair phosph 99.93
1ako_A268 Exonuclease III; AP-endonuclease, DNA repair; 1.70 99.93
2jc5_A259 Exodeoxyribonuclease; hydrolase, repair phosphodie 99.92
2o3h_A285 DNA-(apurinic or apyrimidinic site) lyase; APE, en 99.9
1vyb_A238 ORF2 contains A reverse transcriptase domain; endo 99.9
3g91_A265 MTH0212, exodeoxyribonuclease; double-strand speci 99.9
2voa_A257 AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP 99.9
1hd7_A318 DNA-(apurinic or apyrimidinic site) lyase; DNA rep 99.89
2j63_A467 AP-endonuclease; base excision repair, lyase; 2.48 99.89
2a40_B260 Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse 99.88
1wdu_A245 TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA 99.88
2ei9_A240 Non-LTR retrotransposon R1BMKS ORF2 protein; four 99.79
1sr4_B261 CDT B, cytolethal distending toxin protein B; bact 99.77
2imq_X282 Salivary nitrophorin; ferrous heme, beta-sandwich, 99.77
2f1n_A262 CDT B, cytolethal distending toxin subunit B; E.co 99.73
1i9z_A347 Synaptojanin, phosphatidylinositol phosphate phosp 99.59
2xsw_A357 72 kDa inositol polyphosphate 5-phosphatase; inosi 99.37
4a9c_A316 Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; 98.78
3mtc_A313 Type II inositol-1,4,5-trisphosphate 5-phosphatas; 98.74
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Back     alignment and structure
Probab=100.00  E-value=1.4e-60  Score=488.36  Aligned_cols=334  Identities=27%  Similarity=0.441  Sum_probs=254.4

Q ss_pred             CCCCCCCceEEcCCCCC-CCCCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccC
Q 012486           83 SVTDDHRQWTFSSRDLS-KFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH  161 (462)
Q Consensus        83 ~~~~~~R~w~~~~~~~~-~~~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~  161 (462)
                      ++++..|.|+.+..+.. .....||||||||+++.++.  +.+|++|+.+.+.|.+|++.|+++|..++|||||||||+.
T Consensus         9 ~~~p~~R~wi~~~~~~~~~~~~~~~V~syNIl~d~~~~--~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~   86 (398)
T 3ngq_A            9 PEQLPPRPWITLKERDQILPSASFTVMCYNVLCDKYAT--RQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVET   86 (398)
T ss_dssp             ---CCCCCEEECSCCC--CCCEEEEEEEEECCCGGGCC--TTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEH
T ss_pred             CCCCCCCcceECCCCCCCCCCCCEEEEEEccCcCcCCc--cccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccH
Confidence            55788999999976432 23468999999999998875  5889999999999999999999999999999999999973


Q ss_pred             --h-HhHHHHHhhCCceEEEecCCC---------CCCceeEEEEccCCceeeeeeeeeecccC---------------CC
Q 012486          162 --F-DDLDDLLQMDGFRGVYKARTG---------DANDGCAIFWKEKLFTLLHQENIEFQNFG---------------LR  214 (462)
Q Consensus       162 --~-~~l~~~L~~~gY~~~~~~~~~---------~~~~G~aI~~r~srf~l~~~~~i~~~~~~---------------~~  214 (462)
                        + +.+.+.|..+||.++|..++.         .+++|||||||+++|++++...++|++..               .+
T Consensus        87 ~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~~~~~~~~Ri~t~  166 (398)
T 3ngq_A           87 EQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTK  166 (398)
T ss_dssp             HHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccccchhhhcceeec
Confidence              4 446788999999999875532         35799999999999999999999997532               14


Q ss_pred             CceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhc-----------C
Q 012486          215 HNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEW-----------G  283 (462)
Q Consensus       215 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~-----------~  283 (462)
                      +|+++++.|+.........  ..-....+++.|+|+||||.|+|...++|+.|+..|++.++++.++.           .
T Consensus       167 ~nval~~~L~~~~~~~~~~--~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~  244 (398)
T 3ngq_A          167 DNIGVAVVLEVHKELFGAG--MKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPN  244 (398)
T ss_dssp             CCEEEEEEEEECGGGC-------------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred             cceeEEEEEEEcccccccc--cccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccCC
Confidence            7888888888653100000  00001135789999999999999999999999999999998875322           3


Q ss_pred             CCCEEEcccCCCCCCchhHHHHhcCCccccccccccccccccccccccccccCCCccccccccCcccccchhhHhhhcCC
Q 012486          284 GIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGC  363 (462)
Q Consensus       284 ~~pvIl~GDFNs~P~s~~y~~L~~~~l~~~~~d~~~isgq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g~  363 (462)
                      ..|+|||||||+.|+|++|++|++|.++....|.....            |+....           .|....   ..| 
T Consensus       245 ~~PvIl~GDFNs~P~s~vy~~L~~G~v~~~h~d~~~~~------------y~~~~~-----------~~~~~~---~~~-  297 (398)
T 3ngq_A          245 SIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELR------------YNECLM-----------NFSCNG---KNG-  297 (398)
T ss_dssp             CCCEEEEEECSCCTTSHHHHHHHHTEEETTCGGGCC-----------------GGG-----------GGCC---------
T ss_pred             CCceEEEeeCCCCCCCHHHHHHhcCCCCCCChhhhhcc------------cccccc-----------cccccc---ccc-
Confidence            57999999999999999999999998765433221100            000000           000000   000 


Q ss_pred             CcccccccCCCcccccCCCCCCCCCCCCCCCCccccccCCCCcceeEEEEeC-CceeeeeccCCChhhhc--cCCCCCCC
Q 012486          364 EGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTE-ELVPVRVLETLPVNILR--RNGGLPSE  440 (462)
Q Consensus       364 ~~~~~~~h~~~l~saY~~~~~~~~~~~~~~ep~fT~~~~~f~~~LDYIf~s~-~l~~v~~l~~~~~~~~~--~~~~lPn~  440 (462)
                      .....+.|+++|+|||..           +||+||||+.+|.|||||||||+ .+.++++|+.++.+++.  +..||||.
T Consensus       298 ~~~~~~~h~~~L~SAy~~-----------~~~~fTnyt~~F~g~lDYI~~s~~~l~v~~vl~~~~~~~l~~~~~~glP~~  366 (398)
T 3ngq_A          298 SSEGRITHGFQLKSAYEN-----------NLMPYTNYTFDFKGVIDYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHP  366 (398)
T ss_dssp             --CCEEECSCCEEETTTT-----------TSSSCSEECSSCEECCEEEEEETTTEEEEEEECCCCHHHHHHTTCCSSCBT
T ss_pred             ccccccccCccccccccC-----------CCCCceeccCCcCCceeEEEEeCCceEEEeecCCCCHHHhccccccCCCCC
Confidence            011258899999999975           47899999999999999999997 58888999999988775  57999999


Q ss_pred             CCCCcchhhccEEEEEeC
Q 012486          441 RWGSDHLALVCELAFANN  458 (462)
Q Consensus       441 ~~pSDHlpl~a~f~~~~~  458 (462)
                      .|||||+||+|+|+|++.
T Consensus       367 ~~PSDHi~l~a~f~~~~~  384 (398)
T 3ngq_A          367 HIPSDHFSLLTQLELHPP  384 (398)
T ss_dssp             TBCSSBCCEEEEEEECCC
T ss_pred             CCCCcchheeEEEEEccC
Confidence            999999999999999775
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A* Back     alignment and structure
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans} Back     alignment and structure
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B* Back     alignment and structure
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Back     alignment and structure
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Back     alignment and structure
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Back     alignment and structure
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Back     alignment and structure
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Back     alignment and structure
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Back     alignment and structure
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Back     alignment and structure
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A Back     alignment and structure
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Back     alignment and structure
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D* Back     alignment and structure
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Back     alignment and structure
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Back     alignment and structure
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B Back     alignment and structure
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* Back     alignment and structure
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Back     alignment and structure
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B* Back     alignment and structure
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 462
d1zwxa1293 d.151.1.3 (A:41-333) Sphingomyelin phosphodiestera 4e-12
d2ddra1299 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesteras 7e-11
d1sr4b_261 d.151.1.1 (B:) Cytolethal distending toxin subunit 1e-07
d2f1na1250 d.151.1.1 (A:1-250) Cytolethal distending toxin su 2e-05
d2a40b1260 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos 9e-05
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Length = 293 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Listeria ivanovii [TaxId: 1638]

 Score = 64.6 bits (155), Expect = 4e-12
 Identities = 22/261 (8%), Positives = 61/261 (23%), Gaps = 22/261 (8%)

Query: 101 FKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVD 160
           +   F + S+N+            + +          R  LI +     N  ++ L E  
Sbjct: 1   YPGNFKITSHNVYL----------FSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAF 50

Query: 161 HFDDLDDLLQM--DGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVA 218
                  LL    + +           +           F L          + +     
Sbjct: 51  DTSASHRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQ 110

Query: 219 QLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKL 278
            +         L +   + + ++   +   +   H   + +       +     +     
Sbjct: 111 HIFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQ 170

Query: 279 SQEW-----GGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAK-----CR 328
           +            + + GDLN +  +  Y  +          +       +        +
Sbjct: 171 TFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDMLKLLNVSSPANFNGQMATWDPTTNSMLK 230

Query: 329 DIDFQKRNSTSDWISISRPLL 349
           +   +      D+I +     
Sbjct: 231 ESYPKAAPEYLDYIFVENGHA 251
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Length = 299 Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Length = 261 Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Length = 250 Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Length = 260 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query462
d1zwxa1293 Sphingomyelin phosphodiesterase C {Listeria ivanov 99.93
d2ddra1299 Sphingomyelin phosphodiesterase C {Bacillus cereus 99.93
d2a40b1260 Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913 99.85
d1vyba_236 Endonuclease domain of LINE-1 reverse transcriptas 99.84
d1sr4b_261 Cytolethal distending toxin subunit B {Haemophilus 99.8
d2f1na1250 Cytolethal distending toxin subunit B {Escherichia 99.8
d1wdua_228 Endonuclease domain of TRAS1 retrotransposon (ORF2 99.79
d1hd7a_275 DNA repair endonuclease Hap1 {Human (Homo sapiens) 99.76
d2imqx1280 Salivary nitrophorin {Bedbug (Cimex lectularius) [ 99.72
d1akoa_268 DNA-repair enzyme exonuclease III {Escherichia col 99.65
d1i9za_345 Synaptojanin, IPP5C domain {Fission yeast (Schizos 99.48
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Listeria ivanovii [TaxId: 1638]

Probab=99.93  E-value=3.4e-26  Score=218.79  Aligned_cols=177  Identities=15%  Similarity=0.137  Sum_probs=112.8

Q ss_pred             CCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChH---hHHHHHhhCCceEEE
Q 012486          102 KDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFD---DLDDLLQMDGFRGVY  178 (462)
Q Consensus       102 ~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~---~l~~~L~~~gY~~~~  178 (462)
                      +..||||||||+....     ..+     ....+..|.++|.++|...+|||||||||....   .+...+.. .|...+
T Consensus         2 ~~~lki~s~Nv~~~~~-----~~~-----~~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~l~~~~~~-~~~~~~   70 (293)
T d1zwxa1           2 PGNFKITSHNVYLFSR-----NIY-----PNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLRE-MYPHQT   70 (293)
T ss_dssp             CCSCEEEEEEEEECCT-----TTS-----TTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTT-TCCEEC
T ss_pred             CCCCEEEEEecCcCcc-----ccC-----CCcCHHHHHHHHHHHHHhcCCCEEEEEccCCcchHHHHHHHHhh-hcccee
Confidence            4679999999975321     111     123457889999999999999999999997532   34444432 222221


Q ss_pred             ecC----------------CCCCCceeEEEEccCCceeeeeeeeeecccCCCCc--eeEEEEEEechhhhhhhhhccccc
Q 012486          179 KAR----------------TGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHN--VAQLCVLKMNQSLLESAEESSLSM  240 (462)
Q Consensus       179 ~~~----------------~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~l~~  240 (462)
                      ...                ......|++|+   +|+++.....+.+......+.  ...+.....               
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~il---sr~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  132 (293)
T d1zwxa1          71 PVIGRSKHGWDKTEGNYSNFALEDGGVAVV---SQWPIVEKSQHIFQRGGGADRLSNKGFAYVKI---------------  132 (293)
T ss_dssp             CCTTSCSTTCSEEEC-----CCBCCCCEEE---ESSCEEEEEEEECSCCCGGGGGBCCEEEEEEE---------------
T ss_pred             hhcccccccccccccccccccccccceEEE---eccCcccceeeeeeccccccccccceEEEEEE---------------
Confidence            110                11234689999   889988776655443321111  111111111               


Q ss_pred             ccCCCEEEEEeeCCCCCCCC------chhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHHhcC
Q 012486          241 VSQSQSLVVGNIHVLFNPNR------GDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASS  308 (462)
Q Consensus       241 ~~~g~~l~V~ntHL~~~p~~------~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~~  308 (462)
                      ...+..++|+||||.+....      ...|..|++.++..+..... ..+.|+|||||||..|.+..++.|...
T Consensus       133 ~~~~~~~~v~~~Hl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~vil~GDfN~~~~~~~~~~~~~~  205 (293)
T d1zwxa1         133 MKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNI-PKDEIIFIGGDLNVNYGTDEYHDMLKL  205 (293)
T ss_dssp             EETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTC-CTTSEEEEEEECCCCTTSHHHHHHHHH
T ss_pred             ecCCceEEEEEeeeeccCCccchhHHHHHHHHHHHHhhhhhhhhcc-CCCCcEEEEeecCCCCCchHHHHHHhh
Confidence            13478999999999865322      13477788888777765432 236799999999999999999888753
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Back     information, alignment and structure
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Back     information, alignment and structure
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure