Citrus Sinensis ID: 012511
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 462 | 2.2.26 [Sep-21-2011] | |||||||
| Q3U2U7 | 461 | Methyltransferase-like pr | yes | no | 0.528 | 0.529 | 0.310 | 5e-26 | |
| Q9H7H0 | 456 | Methyltransferase-like pr | yes | no | 0.567 | 0.574 | 0.307 | 1e-24 | |
| Q2TBP8 | 462 | Methyltransferase-like pr | yes | no | 0.512 | 0.512 | 0.310 | 2e-24 | |
| Q9UTM2 | 753 | Rsm22-cox11 tandem protei | yes | no | 0.452 | 0.277 | 0.295 | 8e-15 | |
| Q86ZU7 | 753 | Rsm22-cox11 tandem protei | yes | no | 0.452 | 0.277 | 0.295 | 9e-15 | |
| P36056 | 628 | 37S ribosomal protein S22 | yes | no | 0.779 | 0.573 | 0.244 | 1e-11 | |
| C6V598 | 250 | Malonyl-CoA O-methyltrans | yes | no | 0.101 | 0.188 | 0.425 | 0.0008 |
| >sp|Q3U2U7|MET17_MOUSE Methyltransferase-like protein 17, mitochondrial OS=Mus musculus GN=Mettl17 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 134/283 (47%), Gaps = 39/283 (13%)
Query: 47 KSAYGDIGLKYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSA 106
K+ Y L Y ++ ++ Y+A+R+ ++A +R E++ R+P F P ++DFG+GTGS
Sbjct: 141 KTTYHWQELSYSEELSLIYMAARLDGGFAAVFRAFHEIQARIPEFRPQTLMDFGSGTGSV 200
Query: 107 FWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL--PLIHSYNSIQALNKDISKSE 164
WA W +SL + V+ S +M + L++G + P I Q L +
Sbjct: 201 AWAAHRTWGQSLREYVCVDSSAAMLGLAEKLLKGGSESGKPCIPGVFFRQFLPVS---PK 257
Query: 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWM 224
+ D+V+++Y L E+PS DRI +++ LW T LVLVE GT G ++ R+ +L
Sbjct: 258 VQFDVVVSAYALSELPSRADRIEVIQNLWRKTSHFLVLVENGTKAGHRLLMDARNLVL-- 315
Query: 225 EKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGK--YCHFVQRL 282
E K + LR + APCPHE CP N+ K C F Q
Sbjct: 316 -----------------GEKEKSPLDLRPSF-VFAPCPHELPCPQLNASKSLACSFSQ-- 355
Query: 283 QRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRE--RWP 323
AY + ++E FS V RG P+E RWP
Sbjct: 356 -------AYHPIPFNWNKKPKEEIFSMVILARGS-PKEANRWP 390
|
May be a component of the mitochondrial small ribosomal subunit. Mus musculus (taxid: 10090) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9H7H0|MET17_HUMAN Methyltransferase-like protein 17, mitochondrial OS=Homo sapiens GN=METTL17 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 140/306 (45%), Gaps = 44/306 (14%)
Query: 28 KELFEDP-LKSVEQSKRWKI-----KSAYGDIGLKYRDDETIAYVASRMPAVYSACYRVL 81
K+ E+P L E+ R + K+ Y L Y + ++ Y+A+R+ ++A R
Sbjct: 115 KKFLENPDLSQTEEKLRGAVLHALRKTTYHWQELSYTEGLSLVYMAARLDGGFAAVSRAF 174
Query: 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141
E+R R P F P ++DFG+GTGS WA +W +SL + V+ S +M + L++G
Sbjct: 175 HEIRARNPAFQPQTLMDFGSGTGSVTWAAHSIWGQSLREYMCVDRSAAMLVLAEKLLKGG 234
Query: 142 KDL--PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDV 199
+ P I Q L + + D+V++++ L E+PS DR +V+ LW T
Sbjct: 235 SESGEPYIPGVFFRQFLPVS---PKVQFDVVVSAFSLSELPSKADRTEVVQTLWRKTGHF 291
Query: 200 LVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVA 259
LVLVE GT G S++ R +L K K + R G + A
Sbjct: 292 LVLVENGTKAGHSLLMDARDLVL-------------------KGKEKSPLDPRPGF-VFA 331
Query: 260 PCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPR 319
PCPHE CP + + C F Q AY + ++EKFS V RG P
Sbjct: 332 PCPHELPCP-QLTNLACSFSQ---------AYHPIPFSWNKKPKEEKFSMVILARGS-PE 380
Query: 320 E--RWP 323
E RWP
Sbjct: 381 EAHRWP 386
|
May be a component of the mitochondrial small ribosomal subunit. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q2TBP8|MET17_BOVIN Methyltransferase-like protein 17, mitochondrial OS=Bos taurus GN=METTL17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 127/274 (46%), Gaps = 37/274 (13%)
Query: 55 LKYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVW 114
L Y + ++ Y+A+R+ ++A R E++ RLP F P ++DFG+GTGS WA W
Sbjct: 149 LSYSEGLSLVYMAARLDGGFAAVSRAFHEIQARLPEFQPQTLMDFGSGTGSVTWAAHSTW 208
Query: 115 PRSLEKVNLVEPSQSMQRAGQSLMQG--PKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172
+SL + V+ S +M + L++G +P + Q L + + D+V+A
Sbjct: 209 GQSLREYMCVDSSAAMLELAEKLLKGGSGSGMPCVPGVFFRQFLPVS---PKVQFDVVVA 265
Query: 173 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKY 232
++ L E+PS DR +V+ LW T LVL+E GT G S++ R +L
Sbjct: 266 AFSLSELPSKADRTDVVQTLWRKTGHFLVLIENGTKAGHSLLMDARDLVL---------- 315
Query: 233 EARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGK--YCHFVQRLQRTTSQRA 290
KE S + R G + APCPHE CP + K C F Q A
Sbjct: 316 -------NGKEKSP--LDPRPGF-VFAPCPHELPCPQLTASKPLACSFSQ---------A 356
Query: 291 YKRSKSEPLRGFEDEKFSFVAFRRGERPR-ERWP 323
Y + ++EKFS V RG + RWP
Sbjct: 357 YYPIPFSWNKKPKEEKFSLVILARGSPEKANRWP 390
|
May be a component of the mitochondrial small ribosomal subunit. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9UTM2|CO111_SCHPO Rsm22-cox11 tandem protein 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox1101 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 35/244 (14%)
Query: 59 DDETIAYVASRMPAVYSACYRVLCEVRRRLPGFS--PAKVLDFGAGTGSAFWALREVWPR 116
D + +AY+ MP Y++ Y VL +++ S +LD G G G A V+P
Sbjct: 138 DPQVLAYIHQSMPYQYASLYSVLTDLKIVNSDVSCKSQHILDCGKGPGIGALASYSVFP- 196
Query: 117 SLEKVNLVEPSQSMQRAGQSLMQG--PKDLPLIHSYNSIQALNKDISKSEREHDLVIASY 174
+ V++VE + +++ + P P + S LN+ + + LVIAS
Sbjct: 197 TPNSVSIVEENPFLKKIIYDIHHNIYPSTSP---NPTSPVTLNRLPLGKKDSYTLVIASN 253
Query: 175 VLGEVPSLQDRITIVRQLWDLTRD---VLVLVEPGTPQGSSIISQMRSHILWMEKRKSRK 231
L E+ S ++ +R LW L + +LVL E GT +G S+I + R+ +L
Sbjct: 254 KLLEMKSEKELFDYLRSLWSLVSNDGGLLVLCERGTKRGFSLIQRARTFLL--------- 304
Query: 232 YEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCP--LENS--GKYCHFVQRLQRTTS 287
+KSK+T+ + + HIVAPCPH+GRCP +EN C F Q +
Sbjct: 305 ---QKSKNTSDK--------QFNAHIVAPCPHDGRCPIDIENGVRANICSFKQHFFLSPF 353
Query: 288 QRAY 291
R Y
Sbjct: 354 SRLY 357
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Cox11-1 exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q86ZU7|CO112_SCHPO Rsm22-cox11 tandem protein 2, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cos1102 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 35/244 (14%)
Query: 59 DDETIAYVASRMPAVYSACYRVLCEVRRRLPGFS--PAKVLDFGAGTGSAFWALREVWPR 116
D + +AY+ MP Y++ Y VL +++ S +LD G G G A V+P
Sbjct: 138 DPQVLAYIHQSMPYQYASLYSVLTDLKIVNSDVSCKSQHILDCGKGPGIGALASYSVFP- 196
Query: 117 SLEKVNLVEPSQSMQRAGQSLMQG--PKDLPLIHSYNSIQALNKDISKSEREHDLVIASY 174
+ V++VE + +++ + P P + S LN+ + + LVIAS
Sbjct: 197 TPNSVSIVEENPFLKKIIYDIHHNIYPSTSP---NPTSPVTLNRLPLGKKDSYTLVIASN 253
Query: 175 VLGEVPSLQDRITIVRQLWDLTRD---VLVLVEPGTPQGSSIISQMRSHILWMEKRKSRK 231
L E+ S ++ +R LW L + +LVL E GT +G S+I + R+ +L
Sbjct: 254 KLLEMKSEKELFDYLRSLWSLVSNDGGLLVLCERGTKRGFSLIQRARTFLL--------- 304
Query: 232 YEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCP--LENS--GKYCHFVQRLQRTTS 287
+KSK+T+ + + HIVAPCPH+GRCP +EN C F Q +
Sbjct: 305 ---QKSKNTSDK--------QFNAHIVAPCPHDGRCPIDIENGVRANICSFKQHFFLSPF 353
Query: 288 QRAY 291
R Y
Sbjct: 354 SRLY 357
|
Cox11-2 exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P36056|RT22_YEAST 37S ribosomal protein S22, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSM22 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/459 (24%), Positives = 186/459 (40%), Gaps = 99/459 (21%)
Query: 61 ETIAYVASRMPAVYSACYRVLCEVRRRL--PGFSPAKVLDFGAGTGSAFWALREVW---- 114
E A++AS Y + ++ L E+++R+ F P ++LD G G + AL ++
Sbjct: 127 EVDAHIASIFLQNYGSIFQSLKELQKRVGPDNFKPQRILDVGYGPATGIVALNDILGPNY 186
Query: 115 -----------------------PRSL-EKVNLVEPSQSMQRAGQSLMQGPKDLP----- 145
R L E V+ VE + S ++ Q + K+
Sbjct: 187 RPDLKDAVILGNAEMQERAKIILSRQLNEVVDTVEENVSTEKE-QETDRRNKNFQEDEHI 245
Query: 146 ---LIHSYNSIQALNKDISKSEREHDLVIASYVL---GEVPSLQDRITIVRQLWDLT-RD 198
+ N + L I S +E+DL+I ++ L G +Q I L L
Sbjct: 246 GEVMTKKINIMTNLRSSIPAS-KEYDLIILTHQLLHDGNQFPIQVDENIEHYLNILAPGG 304
Query: 199 VLVLVEPGTPQGSSIISQMRSHILWMEKRK----------SRKYEARKSKDTNKETSKDL 248
+V++E G P G II++ R L E SR R KD +L
Sbjct: 305 HIVIIERGNPMGFEIIARARQITLRPENFPDEFGKIPRPWSRGVTVRGKKDA------EL 358
Query: 249 VTLRSG--VHIVAPCPHEGRCPLE--NSGKYCHFVQR-LQRTTSQRAYKRSKSEPLRGFE 303
+ S + ++APCPH+ +CPL+ N Y H + L+ Q++ KR
Sbjct: 359 GNISSNYFLKVIAPCPHQRKCPLQVGNPNFYTHKEGKDLKFCNFQKSIKRP--------- 409
Query: 304 DEKFSFVAFRRGERPRERWPLDGMKFDTLK-EQHAKRNPEDLEI-DYEDLLRLQAEAEVE 361
KFS + ++G+ W DG + + + + +RN D EI +Y L+ E
Sbjct: 410 --KFS-IELKKGKLLATSW--DGSQGNASRLKGTGRRNGRDYEILNYSYLI-------FE 457
Query: 362 PCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDV 421
K++ E +++++ V+ D ++ D W RII PV+R V MD+
Sbjct: 458 RSHKDENTLKEIKKLRNENVNGKYDI-----GSLGDDTQNSWPRIINDPVKRKGHVMMDL 512
Query: 422 CRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLW 460
C G + +RS + ++ A+KS GDLW
Sbjct: 513 C------APSGELEKWTVSRSFSKQIYHDARKSKKGDLW 545
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|C6V598|BIOC_NEORI Malonyl-CoA O-methyltransferase BioC OS=Neorickettsia risticii (strain Illinois) GN=bioC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 76 ACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVN 122
CY+++ +R RLP F PA VLD GAGTG L +P + +N
Sbjct: 30 CCYKLVAMIRERLPHFMPASVLDIGAGTGYLTKLLLSEFPNACYTMN 76
|
Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. Neorickettsia risticii (strain Illinois) (taxid: 434131) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 9 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 462 | ||||||
| 225426218 | 585 | PREDICTED: methyltransferase-like protei | 0.982 | 0.776 | 0.758 | 0.0 | |
| 255555683 | 501 | cytochrome C oxidase assembly protein co | 0.987 | 0.910 | 0.753 | 0.0 | |
| 449452208 | 508 | PREDICTED: methyltransferase-like protei | 0.987 | 0.897 | 0.743 | 0.0 | |
| 449501769 | 508 | PREDICTED: methyltransferase-like protei | 0.987 | 0.897 | 0.743 | 0.0 | |
| 357515371 | 536 | RSM22-like protein [Medicago truncatula] | 0.978 | 0.843 | 0.732 | 0.0 | |
| 356546324 | 527 | PREDICTED: methyltransferase-like protei | 0.978 | 0.857 | 0.704 | 0.0 | |
| 357140856 | 525 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.870 | 0.642 | 1e-173 | |
| 326504764 | 524 | predicted protein [Hordeum vulgare subsp | 0.984 | 0.868 | 0.634 | 1e-171 | |
| 242035311 | 518 | hypothetical protein SORBIDRAFT_01g03129 | 0.997 | 0.889 | 0.645 | 1e-170 | |
| 30697060 | 537 | copper ion binding / methyltransferase [ | 0.984 | 0.847 | 0.648 | 1e-168 |
| >gi|225426218|ref|XP_002263667.1| PREDICTED: methyltransferase-like protein 17, mitochondrial [Vitis vinifera] gi|297742403|emb|CBI34552.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/468 (75%), Positives = 406/468 (86%), Gaps = 14/468 (2%)
Query: 1 MKRKVLRLSESFNAIKGVNLTLTESTSKELFEDPLKSVEQSKRWKIKSAYGDIGLKYRDD 60
MKRKVLRLSESF IK VNL LT STS+EL EDPLKS+E+SKRWKIKSAYGDIGLKYRDD
Sbjct: 126 MKRKVLRLSESFCEIKDVNLLLTASTSRELVEDPLKSMERSKRWKIKSAYGDIGLKYRDD 185
Query: 61 ETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEK 120
ET+AYVASRMPAVYSACYRVL EVRRRLPGFSPA VLDFG+GTGSA WALREVWPR+LE+
Sbjct: 186 ETVAYVASRMPAVYSACYRVLSEVRRRLPGFSPAGVLDFGSGTGSALWALREVWPRTLER 245
Query: 121 VNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVP 180
+NLVEPS+SMQR QSL+Q K+LPLIHSY+SIQAL ++ISKSEREHDLVIASYVLGE+P
Sbjct: 246 INLVEPSKSMQRVSQSLIQDQKNLPLIHSYDSIQALTQNISKSEREHDLVIASYVLGEIP 305
Query: 181 SLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDT 240
SL+DRITIVRQLWDLTRDVLVLVEPGTPQGS+IISQMRSHILWMEKR+SRK E D
Sbjct: 306 SLKDRITIVRQLWDLTRDVLVLVEPGTPQGSNIISQMRSHILWMEKRRSRKNE-----DA 360
Query: 241 NKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLR 300
+ E SKD + L+ G +IVAPCPH+G CPLE +GKYCHFVQRLQRTTSQRAYKRSK EPLR
Sbjct: 361 SDEVSKDKMALKGGAYIVAPCPHDGPCPLEKTGKYCHFVQRLQRTTSQRAYKRSKGEPLR 420
Query: 301 GFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEV 360
GFEDEKF FVAF+RG+RPRE WPLDGMKFDTLKEQHAKRNPEDLEID+ED +L+ E
Sbjct: 421 GFEDEKFCFVAFKRGQRPREPWPLDGMKFDTLKEQHAKRNPEDLEIDFEDQFQLEDE--- 477
Query: 361 EPCKKEDLVNYESDEVQDDTV------DSDKDQEKGEEETIPADLGGGWGRIIFSPVRRG 414
+ +ED V+Y+SD ++ + + ++++E+G+EET ADLG GWGRIIF+PVRRG
Sbjct: 478 DIPYQEDPVSYDSDVIETAAIDDDNEEEEEEEEEEGDEETTNADLGSGWGRIIFTPVRRG 537
Query: 415 RQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF 462
+QVAMDVCR+ R+GSEGSF +V T+SKNPTLHR A++SLWGDLWPF
Sbjct: 538 KQVAMDVCRATNREGSEGSFDRVVITQSKNPTLHRQARRSLWGDLWPF 585
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555683|ref|XP_002518877.1| cytochrome C oxidase assembly protein cox11, putative [Ricinus communis] gi|223541864|gb|EEF43410.1| cytochrome C oxidase assembly protein cox11, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/463 (75%), Positives = 399/463 (86%), Gaps = 7/463 (1%)
Query: 1 MKRKVLRLSESFNAIKGVNLTLTESTSKELFEDPLKSVEQSKRWKIKSAYGDIGLKYRDD 60
MKRKVLRLSESF+ IK VNL LT +TSKEL EDP KS+E+SKRWKI+S YGD+GLKY DD
Sbjct: 45 MKRKVLRLSESFSEIKDVNLMLTATTSKELVEDPFKSMERSKRWKIRSCYGDVGLKYTDD 104
Query: 61 ETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEK 120
ET+AYVASRMPAV+SACYR+L EV+RRLPGFSP KVLDFGAGTGSAFWA+R+VWP+S+EK
Sbjct: 105 ETVAYVASRMPAVFSACYRILSEVKRRLPGFSPTKVLDFGAGTGSAFWAMRQVWPKSVEK 164
Query: 121 VNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVP 180
VNLVEPS SMQRAG+SL+Q KDLPLIH YNSIQAL+K ISKSEREHDLVIASYVLGE+P
Sbjct: 165 VNLVEPSPSMQRAGRSLIQDLKDLPLIHGYNSIQALSKTISKSEREHDLVIASYVLGEIP 224
Query: 181 SLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDT 240
SL+DRITIVRQLWDLT DVLVLVEPGTP GS+IISQMRSHILWMEKRK RKSK
Sbjct: 225 SLKDRITIVRQLWDLTGDVLVLVEPGTPHGSNIISQMRSHILWMEKRKH-----RKSKAQ 279
Query: 241 NKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLR 300
N E K+LV+++SG +VAPC H+G CPLE SGKYCHF QRLQRT+SQRAYKRSK EPLR
Sbjct: 280 NNEACKELVSIKSGAFVVAPCAHDGYCPLEKSGKYCHFAQRLQRTSSQRAYKRSKGEPLR 339
Query: 301 GFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEV 360
GFEDEKFSFVAFRRG+RPR WPLDGMKF+TLKEQ A+R EDLEIDYED+ Q EA V
Sbjct: 340 GFEDEKFSFVAFRRGQRPRASWPLDGMKFETLKEQRAERKLEDLEIDYEDVDE-QDEAGV 398
Query: 361 EPCKKEDLVNYESDEVQDDTVD-SDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAM 419
P ++ D ++Y+SD ++ D VD +D D+++ ++ET ADLGGGWGRIIFSPVRRGRQV++
Sbjct: 399 VPYEEMDPLDYDSDAIETDGVDNNDGDEKEEQDETGHADLGGGWGRIIFSPVRRGRQVSL 458
Query: 420 DVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF 462
DVCRS+ RD SEGSF+ +V TRSKNP LH AK+SLWGDLWPF
Sbjct: 459 DVCRSVNRDSSEGSFERIVVTRSKNPALHHQAKRSLWGDLWPF 501
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452208|ref|XP_004143852.1| PREDICTED: methyltransferase-like protein 17, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/464 (74%), Positives = 402/464 (86%), Gaps = 8/464 (1%)
Query: 1 MKRKVLRLSESFNAIKGVNLTLTESTSKELFEDPLKSVEQSKRWKIKSAYGDIGLKYRDD 60
+KRKVLRLS+SF+ IK VNL L +TSKEL EDPLKSVEQSKRWKIKS YGDIG +Y DD
Sbjct: 51 LKRKVLRLSQSFSGIKDVNLQLAAATSKELVEDPLKSVEQSKRWKIKSVYGDIGFQYTDD 110
Query: 61 ETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEK 120
ETIAYVASRMPAV+SACYRVL EVRRRLP FSP VLDFGAGTGS FWALREVWP S++K
Sbjct: 111 ETIAYVASRMPAVFSACYRVLNEVRRRLPDFSPTSVLDFGAGTGSGFWALREVWPHSIQK 170
Query: 121 VNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVP 180
VN+VEPSQSMQRAGQSL+QG K+LPLIH Y+SIQ+LNKDISKSEREHDLVIASYVLGE+P
Sbjct: 171 VNIVEPSQSMQRAGQSLIQGLKNLPLIHGYDSIQSLNKDISKSEREHDLVIASYVLGEIP 230
Query: 181 SLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDT 240
SLQDR+TIVRQLW+LT+DVLVLVEPGTPQGS+IISQMRSHILWMEKRK +K E +K+
Sbjct: 231 SLQDRVTIVRQLWNLTKDVLVLVEPGTPQGSNIISQMRSHILWMEKRKWKKNENKKNI-- 288
Query: 241 NKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLR 300
SKDLVT G ++VAPCPH+G+CPLE SGKYCHFVQRL+RTT+QR YKRSK E LR
Sbjct: 289 ---ASKDLVTQTCGAYVVAPCPHDGKCPLEKSGKYCHFVQRLERTTTQRIYKRSKGESLR 345
Query: 301 GFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEV 360
GFEDEKFSFVAFRRG+RPR+ WPLDGM+F+TLKEQHAKRNPEDLEIDYEDLL+++ + +V
Sbjct: 346 GFEDEKFSFVAFRRGQRPRDPWPLDGMRFETLKEQHAKRNPEDLEIDYEDLLKMENQVQV 405
Query: 361 EPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIP--ADLGGGWGRIIFSPVRRGRQVA 418
P ++ D V+Y+SD ++ + +D D ++E+GEE+ P ADLGGGWGRI+FSP RRG +
Sbjct: 406 VPYQEVDPVSYDSDVMETEVLD-DGEEEEGEEQGEPALADLGGGWGRIVFSPRRRGNHIT 464
Query: 419 MDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF 462
M++CRS KRD SEGSF +V T+S+NPTLH A+KS+WGDLWPF
Sbjct: 465 MNICRSTKRDASEGSFDQVVVTQSQNPTLHHQARKSIWGDLWPF 508
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449501769|ref|XP_004161453.1| PREDICTED: methyltransferase-like protein 17, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/464 (74%), Positives = 402/464 (86%), Gaps = 8/464 (1%)
Query: 1 MKRKVLRLSESFNAIKGVNLTLTESTSKELFEDPLKSVEQSKRWKIKSAYGDIGLKYRDD 60
+KRKVLRLS+SF+ IK VNL L +TSKEL EDPLKSVEQSKRWKIKS YGDIG +Y DD
Sbjct: 51 LKRKVLRLSQSFSGIKDVNLQLAAATSKELVEDPLKSVEQSKRWKIKSVYGDIGFQYTDD 110
Query: 61 ETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEK 120
ETIAYVASRMPAV+SACYRVL EVRRRLP FSP VLDFGAGTGS FWALREVWP S++K
Sbjct: 111 ETIAYVASRMPAVFSACYRVLNEVRRRLPDFSPTSVLDFGAGTGSGFWALREVWPHSIQK 170
Query: 121 VNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVP 180
VN+VEPSQSMQRAGQSL+QG K+LPLIH Y+SIQ+LNKDISKSEREHDLVIASYVLGE+P
Sbjct: 171 VNIVEPSQSMQRAGQSLIQGLKNLPLIHGYDSIQSLNKDISKSEREHDLVIASYVLGEIP 230
Query: 181 SLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDT 240
SLQDR+TIVRQLW+LT+DVLVLVEPGTPQGS+IISQMRSHILWMEKRK +K E +K+
Sbjct: 231 SLQDRVTIVRQLWNLTKDVLVLVEPGTPQGSNIISQMRSHILWMEKRKWKKNENKKNI-- 288
Query: 241 NKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLR 300
SKDLVT G ++VAPCPH+G+CPLE SGKYCHFVQRL+RTT+QR YKRSK E LR
Sbjct: 289 ---ASKDLVTQTCGAYVVAPCPHDGKCPLEKSGKYCHFVQRLERTTTQRIYKRSKGESLR 345
Query: 301 GFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEV 360
GFEDEKFSFVAFRRG+RPR+ WPLDGM+F+TLKEQHAKRNPEDLEIDYEDLL+++ + +V
Sbjct: 346 GFEDEKFSFVAFRRGQRPRDPWPLDGMRFETLKEQHAKRNPEDLEIDYEDLLKMENQVQV 405
Query: 361 EPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIP--ADLGGGWGRIIFSPVRRGRQVA 418
P ++ D V+Y+SD ++ + +D D ++E+GEE+ P ADLGGGWGRI+FSP RRG +
Sbjct: 406 VPYQEVDPVSYDSDVMETEVLD-DGEEEEGEEQGEPALADLGGGWGRIVFSPRRRGNHIT 464
Query: 419 MDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF 462
M++CRS KRD SEGSF +V T+S+NPTLH A+KS+WGDLWPF
Sbjct: 465 MNICRSTKRDASEGSFDQVVVTQSQNPTLHHQARKSIWGDLWPF 508
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357515371|ref|XP_003627974.1| RSM22-like protein [Medicago truncatula] gi|355521996|gb|AET02450.1| RSM22-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/459 (73%), Positives = 385/459 (83%), Gaps = 7/459 (1%)
Query: 1 MKRKVLRLSESFNAIKGVNLTLTESTSKELFEDPLKSVEQSKRWKIKSAYGDIGLKYRDD 60
MKRKVLRLS+SFN IK VNL L +TS+E+ E PLKS+EQSKRWKI S+YGDIGL YRD+
Sbjct: 52 MKRKVLRLSQSFNEIKNVNLQLATTTSREIVEHPLKSLEQSKRWKITSSYGDIGLTYRDE 111
Query: 61 ETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEK 120
ETIAYVASRMPAVYSACYRVL EV RRLPGFSP KVLDFGAGTGSAFWAL+EVWP+SLEK
Sbjct: 112 ETIAYVASRMPAVYSACYRVLKEVSRRLPGFSPTKVLDFGAGTGSAFWALQEVWPKSLEK 171
Query: 121 VNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVP 180
VN++EPSQSMQRAGQ L+QG KDLPLIHSY+SIQAL+KDISKSER HDLVIASYVLGE+P
Sbjct: 172 VNIIEPSQSMQRAGQRLIQGLKDLPLIHSYDSIQALSKDISKSERGHDLVIASYVLGEIP 231
Query: 181 SLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDT 240
S++DRITI+RQLWD T+DVLVLVEPGTP GSSII+QMRS+ILWME+RK RKS
Sbjct: 232 SIKDRITILRQLWDQTQDVLVLVEPGTPHGSSIIAQMRSYILWMEERKH-----RKSSKK 286
Query: 241 NKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLR 300
N E KDL+T ++G +VAPCPH+G CPL SGKYCHFVQRL+RT+SQRAYKRSK EPLR
Sbjct: 287 NNEVCKDLITEKAGAFVVAPCPHDGTCPLVKSGKYCHFVQRLERTSSQRAYKRSKGEPLR 346
Query: 301 GFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEV 360
GFEDEKFS+V FRRG RPRE WPLDG+ FDTLKEQ AKRNPEDLEIDYED L+LQ +
Sbjct: 347 GFEDEKFSYVVFRRGPRPREPWPLDGITFDTLKEQQAKRNPEDLEIDYEDWLKLQEADDD 406
Query: 361 EPCKKEDLVNYESD--EVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVA 418
P + + + YESD E D D +++ ++ EEET ADLGGGWGRI+F P+RRG+QV
Sbjct: 407 APREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIADLGGGWGRIVFMPIRRGKQVT 466
Query: 419 MDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWG 457
M+VCRSIKRD SEG F +V T+SKNP LHR AK+S+W
Sbjct: 467 MNVCRSIKRDASEGEFARMVVTKSKNPALHRQAKRSIWA 505
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546324|ref|XP_003541577.1| PREDICTED: methyltransferase-like protein 17, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/484 (70%), Positives = 398/484 (82%), Gaps = 32/484 (6%)
Query: 1 MKRKVLRLSESFNAIKGVNLTLTESTSKELFEDPLKSVEQSKRWKIKSAYGDIGLKYRDD 60
MKRKVLRLS++FN IK VNL L +T+K++ EDP EQSKRWKI S+YGDIGL YRD+
Sbjct: 52 MKRKVLRLSQTFNQIKDVNLQLASTTAKKIVEDPF---EQSKRWKITSSYGDIGLIYRDE 108
Query: 61 ETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEK 120
ET AYVASRMPAVYSACYRVL EVRRRLPGFSP+KVLDFGAGTGSAFWAL+EVWP+SLEK
Sbjct: 109 ETNAYVASRMPAVYSACYRVLKEVRRRLPGFSPSKVLDFGAGTGSAFWALQEVWPKSLEK 168
Query: 121 VNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVP 180
VNL+EPSQSMQRAG+SLMQG K+LPLIHSY+SIQ+L+K I+KSEREHDLVIASYVLGE+P
Sbjct: 169 VNLIEPSQSMQRAGRSLMQGLKNLPLIHSYDSIQSLSKSITKSEREHDLVIASYVLGEIP 228
Query: 181 SLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDT 240
S++DRITIVRQLWDLTRD+LVLVEPGTP GS+II+QMRSHILWME+RK RKS
Sbjct: 229 SIKDRITIVRQLWDLTRDILVLVEPGTPHGSNIIAQMRSHILWMEERK-----YRKSSRK 283
Query: 241 NKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLR 300
N E KDL+T ++G +VAPCPH+G CPL SGKYCHFVQRL+RT+SQRAYKRSK +PLR
Sbjct: 284 NNEVCKDLITEKAGAFVVAPCPHDGACPLVKSGKYCHFVQRLERTSSQRAYKRSKGDPLR 343
Query: 301 GFEDEKFSFVAFRRGERPRER--WPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQ--- 355
GFEDEKFS+V FRRG RPR+ WPLDGM+F+TLKEQHAKRNPEDLEIDYED L+LQ
Sbjct: 344 GFEDEKFSYVVFRRGSRPRQVDPWPLDGMEFETLKEQHAKRNPEDLEIDYEDWLKLQQSD 403
Query: 356 ------AEAEVE----------PCKKEDLVNYESDEV--QDDTVDSDKDQEKGEEETIPA 397
A+AE + P + + V Y+SD+ D +DS++D+E+ EE A
Sbjct: 404 DTPHEVADAETDIADDLETDDAPREVVNAVTYDSDDAVETDGPIDSEEDEEREEERG-SA 462
Query: 398 DLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWG 457
DLGGGWGRI+F PVRRGRQV M+VCRS KRD SEGS+ +V TR+KNPTLH+ AK+S+WG
Sbjct: 463 DLGGGWGRIVFMPVRRGRQVTMNVCRSTKRDASEGSYDRIVVTRTKNPTLHQQAKRSIWG 522
Query: 458 DLWP 461
DLWP
Sbjct: 523 DLWP 526
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357140856|ref|XP_003571978.1| PREDICTED: uncharacterized protein LOC100843174, partial [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 302/470 (64%), Positives = 365/470 (77%), Gaps = 13/470 (2%)
Query: 1 MKRKVLRLSESFNAIKGVNLTLTESTSK-ELFEDPLKSV---EQSKRWKIKSAYGDIGLK 56
M RKVL LS SF KG LT + ++ L +DP +++ RWK++S+YGD GL+
Sbjct: 61 MHRKVLMLSSSFERAKGTGAELTAAATRGALLDDPHAPAGAEQRTARWKVQSSYGDTGLQ 120
Query: 57 YRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPR 116
YR+DET+AYVASRMPA+Y+AC+RVL EVRRR P F+P KVLDFGAG SA WA+R VWP+
Sbjct: 121 YREDETVAYVASRMPAIYAACHRVLREVRRRSPDFAPKKVLDFGAGPSSALWAMRAVWPK 180
Query: 117 SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 176
S+E+VNLVEPS+ MQRAGQ+L+ K LPLIHSY+SIQ LN+ I K ER HDLVI+SY L
Sbjct: 181 SIERVNLVEPSKEMQRAGQTLLDNLKGLPLIHSYDSIQELNRTIEKHERGHDLVISSYAL 240
Query: 177 GEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARK 236
GE+PSL DRITIVRQLWDLT+DVLVL+EPGTPQGS IISQMRS+ILWMEKRK RK E K
Sbjct: 241 GEIPSLSDRITIVRQLWDLTKDVLVLLEPGTPQGSKIISQMRSYILWMEKRKCRKSE--K 298
Query: 237 SKDTNKETSKDLV----TLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYK 292
S +K++V L++G +VAPCPH+GRCPLENS KYCHFVQRL+RT+SQR YK
Sbjct: 299 STGGAPSKTKNIVHQEALLKNGAFVVAPCPHDGRCPLENSDKYCHFVQRLERTSSQRIYK 358
Query: 293 RSKSEPLRGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLL 352
RSK PLRGFEDEKF +VA RRG+RP E WPLDGMKFDTLKE+HAKRNPEDL IDYE+
Sbjct: 359 RSKGVPLRGFEDEKFCYVALRRGKRPEEAWPLDGMKFDTLKERHAKRNPEDLIIDYEEQF 418
Query: 353 RLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVR 412
+ + E ++ LV Y SD Q+ ++ + +E E+E I ADLGGGWGRII+SP+R
Sbjct: 419 PSEEDEETLAGHEDSLVPYTSD-TQELSLFHESREE--EDEPIRADLGGGWGRIIYSPIR 475
Query: 413 RGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF 462
RGRQV MDVCR+ KRD SEG+F+ +V T+SKNP LH A++SLWGDLWPF
Sbjct: 476 RGRQVQMDVCRATKRDASEGAFERVVVTQSKNPALHLQARRSLWGDLWPF 525
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326504764|dbj|BAK06673.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust.
Identities = 300/473 (63%), Positives = 356/473 (75%), Gaps = 18/473 (3%)
Query: 1 MKRKVLRLSESFNAIKGVNLTLTESTSKELFED----PLKSVEQSKRWKIKSAYGDIGLK 56
M RKVL LS SF KG L + ++ D P + +++ RWK++S+YGDIGL+
Sbjct: 59 MHRKVLLLSSSFERAKGTGTELAAAATRSALLDDPHAPASAEQRTARWKVQSSYGDIGLR 118
Query: 57 YRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPR 116
YR+DET+AYVASRMPA+Y+AC+RVL EVRRR P F+P VLDFGAG SA WA+R VWP+
Sbjct: 119 YREDETVAYVASRMPAIYAACHRVLREVRRRSPDFAPKNVLDFGAGPSSALWAMRAVWPK 178
Query: 117 SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 176
S+E+VNL+EPS+ MQRAGQ+L+ K LPLIHSY+ IQ LN+ I K ER HDLVI+SY L
Sbjct: 179 SIERVNLIEPSKEMQRAGQTLLDNLKGLPLIHSYDGIQELNRSIEKHERRHDLVISSYAL 238
Query: 177 GEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARK 236
GE+PSL DRITI RQLWDLT+DVLVL+EPGTPQGS IISQMRS+ILWMEKRK RK E K
Sbjct: 239 GEIPSLNDRITIARQLWDLTKDVLVLLEPGTPQGSKIISQMRSYILWMEKRKCRKSE--K 296
Query: 237 SKDTNKETSKDLVT----LRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYK 292
S K +V L+ G +VAPCPH+G+CPLENS KYCHFVQRL+RT+SQR YK
Sbjct: 297 STGAAPSKMKSIVAQEDLLKDGAFVVAPCPHDGQCPLENSDKYCHFVQRLERTSSQRIYK 356
Query: 293 RSKSEPLRGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLL 352
RSK PLRGFEDEKF +VA RRG+RP E WPLDGMKFDTLKE+HAKRNPEDL IDY+D
Sbjct: 357 RSKGVPLRGFEDEKFCYVALRRGKRPEEAWPLDGMKFDTLKERHAKRNPEDLIIDYDDQF 416
Query: 353 RLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEET---IPADLGGGWGRIIFS 409
+ + E C ++ LV Y S DT + E GEEE I ADLGGGWGRII+S
Sbjct: 417 PSEEDEEAPDCDEDSLVPYAS-----DTQELSLFHESGEEEEEEPIRADLGGGWGRIIYS 471
Query: 410 PVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF 462
P+RRGRQV MDVCR+ KRD SEG+F+ +V T+SKNP LH A+KSLWGDLWPF
Sbjct: 472 PIRRGRQVQMDVCRATKRDASEGAFERVVVTQSKNPALHLQARKSLWGDLWPF 524
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242035311|ref|XP_002465050.1| hypothetical protein SORBIDRAFT_01g031290 [Sorghum bicolor] gi|241918904|gb|EER92048.1| hypothetical protein SORBIDRAFT_01g031290 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 302/468 (64%), Positives = 368/468 (78%), Gaps = 7/468 (1%)
Query: 1 MKRKVLRLSESFNAIKGVNLTLTESTSK-ELFEDPLK---SVEQSKRWKIKSAYGDIGLK 56
M RKVL LS SF+ KG L + ++ L +DP + +++ RWK++SAYGDIGL+
Sbjct: 52 MNRKVLLLSASFDRAKGTGAELAAAATRGALLDDPNAPSGAEQRAARWKVRSAYGDIGLR 111
Query: 57 YRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPR 116
YR+DET+AYVASRMPA+Y+AC+RVL EVRRRLP F+PAKVLDFGAG SA WA+R VWP+
Sbjct: 112 YREDETVAYVASRMPAIYAACHRVLREVRRRLPDFAPAKVLDFGAGPSSALWAMRAVWPK 171
Query: 117 SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 176
S+E+VNLVEPS+ MQRAGQSL+ K LPLIHSY+SIQ LN+ I K ER HDLV++SY L
Sbjct: 172 SIERVNLVEPSKEMQRAGQSLLDNLKGLPLIHSYDSIQELNRKIEKHERGHDLVVSSYAL 231
Query: 177 GEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARK 236
GE+PSL DRITIVRQLWDLT DVLVL+EPGTPQG+ IISQMRS+ILWMEKRK RK E
Sbjct: 232 GEIPSLSDRITIVRQLWDLTSDVLVLLEPGTPQGAKIISQMRSYILWMEKRKCRKIEKSS 291
Query: 237 SK--DTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRS 294
S+ + K +L++G +VAPCPH+GRCPLENS KYCHFVQRL+RT+SQRAYKRS
Sbjct: 292 SRPPSSMKSIVAQEASLKNGSFVVAPCPHDGRCPLENSDKYCHFVQRLERTSSQRAYKRS 351
Query: 295 KSEPLRGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRL 354
K PLRGFEDEKF +VA RRG+RP E WPLDG+ F+TLKE+HAKR PE+L IDY+D
Sbjct: 352 KGVPLRGFEDEKFCYVALRRGKRPEEAWPLDGLNFETLKERHAKRKPEELIIDYDDQFPS 411
Query: 355 QAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRG 414
+ + EV + LV Y SDE + ++ D ++ + E++TI ADLGGGWGRII+SP+RRG
Sbjct: 412 EEDEEVPVDGGDSLVPYASDE-HELSLFHDSEEAEEEDQTIRADLGGGWGRIIYSPIRRG 470
Query: 415 RQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF 462
RQV MDVCRS KRD SEG+F+ +V TRSKNPTLH A++SLWGDLWPF
Sbjct: 471 RQVQMDVCRSTKRDASEGAFERVVLTRSKNPTLHFQARRSLWGDLWPF 518
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30697060|ref|NP_176641.2| copper ion binding / methyltransferase [Arabidopsis thaliana] gi|26453110|dbj|BAC43631.1| unknown protein [Arabidopsis thaliana] gi|29028950|gb|AAO64854.1| At1g64600 [Arabidopsis thaliana] gi|332196138|gb|AEE34259.1| copper ion binding / methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 305/470 (64%), Positives = 375/470 (79%), Gaps = 15/470 (3%)
Query: 1 MKRKVLRLSESFNAIKGVNLTLTESTSKELFEDPLKSVEQSKRWKIKSAYGDIGLKYRDD 60
+++KV +LSESF IK NL L E+T+K L D + S+E +KRWKI++ YGD GL+YRD
Sbjct: 46 IRKKVRQLSESFQEIKDTNLQLPETTAKSL-ADSMNSLE-TKRWKIQTVYGDSGLQYRDG 103
Query: 61 ETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEK 120
ET AY+ASRMPAV+S CYRVL E+RRR+PGF+P +VLDFGAGTGS FWA++EVWP+S+EK
Sbjct: 104 ETAAYIASRMPAVFSVCYRVLIEIRRRVPGFTPTRVLDFGAGTGSGFWAVKEVWPKSVEK 163
Query: 121 VNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVIASYVLGEV 179
VN+VEPSQSMQRAG++L+QG KDLPLIH Y S+ ALNK+I+ KSER+HDLVIASYVLGE+
Sbjct: 164 VNIVEPSQSMQRAGRNLIQGLKDLPLIHGYTSLLALNKEINKKSERKHDLVIASYVLGEI 223
Query: 180 PSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKD 239
PSL+DRIT+VRQLWDLT D+LVLVEPGTP G++IISQMRSHILWMEKRK RK E + KD
Sbjct: 224 PSLKDRITVVRQLWDLTDDLLVLVEPGTPHGANIISQMRSHILWMEKRKLRKLEKKMKKD 283
Query: 240 TNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPL 299
K+++ L+SG HIVAPCPH+G+CPLEN+GKYCHFVQRLQRT+SQR+YKR+K PL
Sbjct: 284 -----GKEVLDLKSGAHIVAPCPHDGKCPLENTGKYCHFVQRLQRTSSQRSYKRTKGVPL 338
Query: 300 RGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQA--E 357
RGFEDEKF FVAFRRG+RPRE WPLDGMK +TLKE+ A + PEDLEIDYED ++ Q
Sbjct: 339 RGFEDEKFCFVAFRRGQRPRELWPLDGMKLETLKERRANKKPEDLEIDYEDFIKSQVVEV 398
Query: 358 AEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIP-----ADLGGGWGRIIFSPVR 412
++P + E++E Q+D +D+D+E EE I A +GGGWGRIIF P R
Sbjct: 399 PYIDPRAYDSDTMDENEEEQEDGGGTDEDEEDKIEEEIEEESERASVGGGWGRIIFPPFR 458
Query: 413 RGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF 462
+G+QV +D+C K DGSEG+F+ V T+SKNP LH AKKS WGDLWP
Sbjct: 459 KGKQVTLDMCVPTKEDGSEGAFERRVITKSKNPDLHLQAKKSFWGDLWPL 508
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 462 | ||||||
| TAIR|locus:2019484 | 537 | AT1G64600 [Arabidopsis thalian | 0.982 | 0.845 | 0.652 | 2.3e-165 | |
| DICTYBASE|DDB_G0292286 | 1241 | DDB_G0292286 [Dictyostelium di | 0.474 | 0.176 | 0.347 | 1.2e-40 | |
| UNIPROTKB|I3L7P4 | 345 | METTL17 "Uncharacterized prote | 0.370 | 0.495 | 0.344 | 2.7e-34 | |
| MGI|MGI:1098577 | 461 | Mettl17 "methyltransferase lik | 0.387 | 0.388 | 0.340 | 2.6e-31 | |
| RGD|1559895 | 461 | Mettl17 "methyltransferase lik | 0.387 | 0.388 | 0.329 | 1.4e-28 | |
| UNIPROTKB|Q9H7H0 | 456 | METTL17 "Methyltransferase-lik | 0.428 | 0.434 | 0.328 | 1.9e-28 | |
| UNIPROTKB|F1MEK1 | 462 | METTL17 "Methyltransferase-lik | 0.370 | 0.370 | 0.338 | 3e-27 | |
| UNIPROTKB|Q2TBP8 | 462 | METTL17 "Methyltransferase-lik | 0.370 | 0.370 | 0.338 | 3e-27 | |
| UNIPROTKB|F1PNZ8 | 308 | METTL17 "Uncharacterized prote | 0.350 | 0.525 | 0.317 | 1.1e-26 | |
| ZFIN|ZDB-GENE-031118-203 | 464 | mettl17 "methyltransferase lik | 0.380 | 0.379 | 0.342 | 1.1e-24 |
| TAIR|locus:2019484 AT1G64600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1609 (571.5 bits), Expect = 2.3e-165, P = 2.3e-165
Identities = 306/469 (65%), Positives = 377/469 (80%)
Query: 1 MKRKVLRLSESFNAIKGVNLTLTESTSKELFEDPLKSVEQSKRWKIKSAYGDIGLKYRDD 60
+++KV +LSESF IK NL L E+T+K L D + S+E +KRWKI++ YGD GL+YRD
Sbjct: 46 IRKKVRQLSESFQEIKDTNLQLPETTAKSL-ADSMNSLE-TKRWKIQTVYGDSGLQYRDG 103
Query: 61 ETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEK 120
ET AY+ASRMPAV+S CYRVL E+RRR+PGF+P +VLDFGAGTGS FWA++EVWP+S+EK
Sbjct: 104 ETAAYIASRMPAVFSVCYRVLIEIRRRVPGFTPTRVLDFGAGTGSGFWAVKEVWPKSVEK 163
Query: 121 VNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK-SEREHDLVIASYVLGEV 179
VN+VEPSQSMQRAG++L+QG KDLPLIH Y S+ ALNK+I+K SER+HDLVIASYVLGE+
Sbjct: 164 VNIVEPSQSMQRAGRNLIQGLKDLPLIHGYTSLLALNKEINKKSERKHDLVIASYVLGEI 223
Query: 180 PSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKD 239
PSL+DRIT+VRQLWDLT D+LVLVEPGTP G++IISQMRSHILWMEKRK RK E + KD
Sbjct: 224 PSLKDRITVVRQLWDLTDDLLVLVEPGTPHGANIISQMRSHILWMEKRKLRKLEKKMKKD 283
Query: 240 TNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPL 299
K+++ L+SG HIVAPCPH+G+CPLEN+GKYCHFVQRLQRT+SQR+YKR+K PL
Sbjct: 284 -----GKEVLDLKSGAHIVAPCPHDGKCPLENTGKYCHFVQRLQRTSSQRSYKRTKGVPL 338
Query: 300 RGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQA-EA 358
RGFEDEKF FVAFRRG+RPRE WPLDGMK +TLKE+ A + PEDLEIDYED ++ Q E
Sbjct: 339 RGFEDEKFCFVAFRRGQRPRELWPLDGMKLETLKERRANKKPEDLEIDYEDFIKSQVVEV 398
Query: 359 E-VEP-CKKEDLVNYESDEVQD----DTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVR 412
++P D ++ +E +D D + DK +E+ EEE+ A +GGGWGRIIF P R
Sbjct: 399 PYIDPRAYDSDTMDENEEEQEDGGGTDEDEEDKIEEEIEEESERASVGGGWGRIIFPPFR 458
Query: 413 RGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWP 461
+G+QV +D+C K DGSEG+F+ V T+SKNP LH AKKS WGDLWP
Sbjct: 459 KGKQVTLDMCVPTKEDGSEGAFERRVITKSKNPDLHLQAKKSFWGDLWP 507
|
|
| DICTYBASE|DDB_G0292286 DDB_G0292286 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 374 (136.7 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 84/242 (34%), Positives = 132/242 (54%)
Query: 55 LKYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVW 114
+ Y + +AY++ RMP VY+ +RV E+ RLP F P +LD+G+G G+ W+ +W
Sbjct: 618 ITYGKGQVLAYISHRMPGVYACTHRVFSEINSRLPNFKPTSLLDYGSGPGTVLWSADTIW 677
Query: 115 PRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSY-NSIQALNKDISKSERE-HDLVIA 172
S++++ VEPS M + L++G + Y N+ +D + E +++V A
Sbjct: 678 GDSIKRIRAVEPSTYMSDVAKKLLEGNTNRVKWSPYLNTANLKRQDGTIPSTELNEMVTA 737
Query: 173 SYVLGEVPSLQDRITIVRQLWDLTRD--VLVLVEPGTPQGSSIISQMRSHILWMEKRKSR 230
SYVL E+PS + R +VR+LW + +LVL+EPGTP G +II + R IL E
Sbjct: 738 SYVLSELPSQEARNDLVRELWSHVKPSGILVLIEPGTPIGFNIIKEARQLILDEEPEILS 797
Query: 231 KYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRA 290
Y++ K++ +VAPCPH G+CP+ S +CHF QR++R Q+
Sbjct: 798 IYKSTKAQ------------------VVAPCPHSGKCPM-GSLSWCHFSQRVERPVFQKL 838
Query: 291 YK 292
K
Sbjct: 839 AK 840
|
|
| UNIPROTKB|I3L7P4 METTL17 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 61/177 (34%), Positives = 96/177 (54%)
Query: 55 LKYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVW 114
L Y + ++ Y+A+R+ ++A R E++ R P F P ++DFG+GTGS WA W
Sbjct: 34 LSYNEGLSLLYMAARLDGGFAAVSRAFHEIQARFPEFQPQTLMDFGSGTGSVTWAAHSTW 93
Query: 115 PRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LPLIHSYNSIQALNKDISKSEREHDLVIA 172
+SL + V+ S +M + L++G + LP + Q L +S + D+V++
Sbjct: 94 GQSLREYMCVDSSAAMLDLAEKLLKGGSESGLPYVPGVFFRQFL--PVSPKV-QFDVVVS 150
Query: 173 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKS 229
++ L E+PS DR IV+ LW T L+LVE GT G S++ R +L EK KS
Sbjct: 151 AFSLSELPSKADRNDIVQTLWRKTSHFLILVENGTKAGHSLLMDARDLVL-NEKEKS 206
|
|
| MGI|MGI:1098577 Mettl17 "methyltransferase like 17" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 270 (100.1 bits), Expect = 2.6e-31, Sum P(4) = 2.6e-31
Identities = 63/185 (34%), Positives = 102/185 (55%)
Query: 47 KSAYGDIGLKYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSA 106
K+ Y L Y ++ ++ Y+A+R+ ++A +R E++ R+P F P ++DFG+GTGS
Sbjct: 141 KTTYHWQELSYSEELSLIYMAARLDGGFAAVFRAFHEIQARIPEFRPQTLMDFGSGTGSV 200
Query: 107 FWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL--PLIHSYNSIQALNKDISKSE 164
WA W +SL + V+ S +M + L++G + P I Q L +S
Sbjct: 201 AWAAHRTWGQSLREYVCVDSSAAMLGLAEKLLKGGSESGKPCIPGVFFRQFL--PVSPKV 258
Query: 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWM 224
+ D+V+++Y L E+PS DRI +++ LW T LVLVE GT G ++ R+ +L
Sbjct: 259 -QFDVVVSAYALSELPSRADRIEVIQNLWRKTSHFLVLVENGTKAGHRLLMDARNLVLG- 316
Query: 225 EKRKS 229
EK KS
Sbjct: 317 EKEKS 321
|
|
| RGD|1559895 Mettl17 "methyltransferase like 17" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 61/185 (32%), Positives = 101/185 (54%)
Query: 47 KSAYGDIGLKYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSA 106
K+ Y L Y ++ ++ Y+A+R+ ++A +R E++ R+P F P ++DFG+GTGS
Sbjct: 141 KTTYHWQELSYNEELSLIYMAARLDGGFAAVFRAFHEIQARIPEFQPQTLMDFGSGTGSV 200
Query: 107 FWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL--PLIHSYNSIQALNKDISKSE 164
WA W +SL + V+ S +M + L++G + P I Q L +S +
Sbjct: 201 AWAAHSTWGQSLREYVCVDRSAAMLGLAEKLLKGGSESGKPCIPGVFFRQFL--PVSP-K 257
Query: 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWM 224
D+V++++ L E+PS DR +++ LW T LVLVE GT G ++ R+ IL
Sbjct: 258 ATFDVVVSAFALSELPSRADRTEVLQNLWRKTSHFLVLVENGTKAGHRLLMDARNLILG- 316
Query: 225 EKRKS 229
+K KS
Sbjct: 317 DKEKS 321
|
|
| UNIPROTKB|Q9H7H0 METTL17 "Methyltransferase-like protein 17, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 260 (96.6 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 69/210 (32%), Positives = 108/210 (51%)
Query: 28 KELFEDP-LKSVEQSKRWKI-----KSAYGDIGLKYRDDETIAYVASRMPAVYSACYRVL 81
K+ E+P L E+ R + K+ Y L Y + ++ Y+A+R+ ++A R
Sbjct: 115 KKFLENPDLSQTEEKLRGAVLHALRKTTYHWQELSYTEGLSLVYMAARLDGGFAAVSRAF 174
Query: 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141
E+R R P F P ++DFG+GTGS WA +W +SL + V+ S +M + L++G
Sbjct: 175 HEIRARNPAFQPQTLMDFGSGTGSVTWAAHSIWGQSLREYMCVDRSAAMLVLAEKLLKGG 234
Query: 142 KDL--PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDV 199
+ P I Q L +S + D+V++++ L E+PS DR +V+ LW T
Sbjct: 235 SESGEPYIPGVFFRQFL--PVSPKV-QFDVVVSAFSLSELPSKADRTEVVQTLWRKTGHF 291
Query: 200 LVLVEPGTPQGSSIISQMRSHILWMEKRKS 229
LVLVE GT G S++ R +L K KS
Sbjct: 292 LVLVENGTKAGHSLLMDARDLVL-KGKEKS 320
|
|
| UNIPROTKB|F1MEK1 METTL17 "Methyltransferase-like protein 17, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 254 (94.5 bits), Expect = 3.0e-27, Sum P(3) = 3.0e-27
Identities = 60/177 (33%), Positives = 95/177 (53%)
Query: 55 LKYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVW 114
L Y + ++ Y+A+R+ ++A R E++ RLP F P ++DFG+GTGS WA W
Sbjct: 149 LSYSEGLSLVYMAARLDGGFAAVSRAFHEIQARLPEFQPQTLMDFGSGTGSVTWAAHSTW 208
Query: 115 PRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LPLIHSYNSIQALNKDISKSEREHDLVIA 172
+SL + V+ S +M + L++G +P + Q L +S + D+V+A
Sbjct: 209 GQSLREYMCVDSSAAMLELAEKLLKGGSGSGMPCVPGVFFRQFL--PVSPKV-QFDVVVA 265
Query: 173 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKS 229
++ L E+PS DR +V+ LW T LVL+E GT G S++ R +L K KS
Sbjct: 266 AFSLSELPSKADRTDVVQTLWRKTGHFLVLIENGTKAGHSLLMDARDLVL-NGKEKS 321
|
|
| UNIPROTKB|Q2TBP8 METTL17 "Methyltransferase-like protein 17, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 254 (94.5 bits), Expect = 3.0e-27, Sum P(3) = 3.0e-27
Identities = 60/177 (33%), Positives = 95/177 (53%)
Query: 55 LKYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVW 114
L Y + ++ Y+A+R+ ++A R E++ RLP F P ++DFG+GTGS WA W
Sbjct: 149 LSYSEGLSLVYMAARLDGGFAAVSRAFHEIQARLPEFQPQTLMDFGSGTGSVTWAAHSTW 208
Query: 115 PRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LPLIHSYNSIQALNKDISKSEREHDLVIA 172
+SL + V+ S +M + L++G +P + Q L +S + D+V+A
Sbjct: 209 GQSLREYMCVDSSAAMLELAEKLLKGGSGSGMPCVPGVFFRQFL--PVSPKV-QFDVVVA 265
Query: 173 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKS 229
++ L E+PS DR +V+ LW T LVL+E GT G S++ R +L K KS
Sbjct: 266 AFSLSELPSKADRTDVVQTLWRKTGHFLVLIENGTKAGHSLLMDARDLVL-NGKEKS 321
|
|
| UNIPROTKB|F1PNZ8 METTL17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 217 (81.4 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 52/164 (31%), Positives = 83/164 (50%)
Query: 66 VASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVE 125
+A+R+ ++A R E+R R+P F P ++DFG+GTGS WA W +SL + V+
Sbjct: 1 MAARLDGGFAAVSRAFHEIRTRVPKFQPQTLMDFGSGTGSVTWAAHSAWGQSLREYMCVD 60
Query: 126 PSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDR 185
S +M + L++G H +S + D+V++++ L E+PS DR
Sbjct: 61 SSAAMLDLAEKLLRGGSASGEPHVPGVFFRQFLPVSPKV-QFDVVVSAFSLSELPSKADR 119
Query: 186 ITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKS 229
++ LW T L+LVE GT G ++ R +L K KS
Sbjct: 120 TETIQTLWRKTGHFLILVENGTKAGHCLLMDARDLVL-KGKEKS 162
|
|
| ZFIN|ZDB-GENE-031118-203 mettl17 "methyltransferase like 17" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 62/181 (34%), Positives = 99/181 (54%)
Query: 47 KSAYGDIGLKYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSA 106
++ Y L+Y +D + Y+ +R+ Y+A R L E+++R P F P +LDFG+G G+
Sbjct: 143 RTTYHRAALRYNEDLGLVYMVARLAGGYAAVLRALNEIKKRDPLFVPYSLLDFGSGLGTG 202
Query: 107 FWALREVWPRSLEKVNLVEPSQSMQR-AGQSLMQGP-KDLPLIHSYNSIQALNKDISKSE 164
WA +W SL++ V+ S M A Q L++G ++ P I Q L +S
Sbjct: 203 TWAAHRLWGDSLKEYVCVDSSGDMNTLAEQLLLEGSERNNPTIKQVYFRQFL--PVSPKV 260
Query: 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWM 224
+ DLV+A++ L E+ +L +R+ ++ LW T LVLVE GT +G I+ + R IL
Sbjct: 261 -QFDLVVAAFSLSELATLDERLNVISTLWRKTNSYLVLVENGTKEGHQILMEARDAILKR 319
Query: 225 E 225
E
Sbjct: 320 E 320
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 462 | |||
| pfam09243 | 275 | pfam09243, Rsm22, Mitochondrial small ribosomal su | 6e-44 | |
| COG5459 | 484 | COG5459, COG5459, Predicted rRNA methylase [Transl | 4e-37 | |
| pfam09243 | 275 | pfam09243, Rsm22, Mitochondrial small ribosomal su | 2e-07 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-04 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 0.003 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 0.003 |
| >gnl|CDD|220152 pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22 | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 6e-44
Identities = 85/262 (32%), Positives = 122/262 (46%), Gaps = 45/262 (17%)
Query: 59 DDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSL 118
+ + AY A+R+PA Y+A L E+ R+P F+P LD GAG G+A WA E+WP L
Sbjct: 1 REASKAYAAARLPATYAAVRASLDELAERVPQFAPLSHLDVGAGPGTALWAASELWPG-L 59
Query: 119 EKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSER---EHDLVIASYV 175
E +++ S++ G+ L + +P + +D+ + DLV SYV
Sbjct: 60 EPATVIDASEAALAIGEELA---RHIPALKH----AWRARDVIGAALDFEPADLVTISYV 112
Query: 176 LGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEAR 235
L E+ R ++ LW LV+VEPGTP G + +E R+
Sbjct: 113 LDELTP-ASREKVIDNLWAKAAQALVIVEPGTPAGWRRV---------LEARERLIAA-- 160
Query: 236 KSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSK 295
G HI APCPHE CPL G +CHF QR+ R++ R +
Sbjct: 161 ------------------GFHIAAPCPHELACPLVAPGDWCHFSQRVARSSLHR-LAKDA 201
Query: 296 SEPLRGFEDEKFSFVAFRRGER 317
S P +EDEKFS++A R
Sbjct: 202 SVP---WEDEKFSYLAAERQPV 220
|
Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria. Length = 275 |
| >gnl|CDD|227746 COG5459, COG5459, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 4e-37
Identities = 100/410 (24%), Positives = 164/410 (40%), Gaps = 94/410 (22%)
Query: 59 DDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSL 118
D AY+ASR+P Y++ L E+++R+P F+P +LD GAG G+ WAL ++WP L
Sbjct: 80 DMAVKAYIASRLPQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWP-DL 138
Query: 119 EKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGE 178
+ ++E S ++++ G +L + + + + ++ + L I L
Sbjct: 139 KSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAAD-LYTLAIVLDELLP 197
Query: 179 VPSLQDRITIVRQLWDLTR--DVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARK 236
+ + + +LW+L LV+VE GTP G I + R +L
Sbjct: 198 DGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQILLAPGNFPDEF----- 252
Query: 237 SKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLE----NSGKYCHFVQRLQRTTSQRAYK 292
HI+APCPH+ +CPL+ +CHF QR+
Sbjct: 253 ---------------NYFAHIIAPCPHQRKCPLQVPNGKDLDWCHFSQRV---------A 288
Query: 293 RSKSEPLRGFEDEKFSFVAFRRGERPR-ERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDL 351
RSK F + R R DG + + + + +R EI +E
Sbjct: 289 RSK----------------FSIELKKRLHRTSKDGSQGNASRLK--RRAGRPWEILFER- 329
Query: 352 LRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPV 411
S KD++ +E + W RII PV
Sbjct: 330 -------------------------------SHKDEKFLKEAAVRRPTANSWPRIIAPPV 358
Query: 412 RRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWP 461
+R V +D+C +G + + T+S ++RLA+KS WGDL+
Sbjct: 359 KRKGHVMIDLCAP------DGELEEWLVTKSDGKQIYRLARKSDWGDLFA 402
|
Length = 484 |
| >gnl|CDD|220152 pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22 | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 403 WGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWP 461
R++ P R V +D+C +G+ Q L+ T+ L++ A+++ WGD WP
Sbjct: 224 APRVVRPPQVRSGHVLIDLC------SEDGTLQELLVTKRHGY-LYKAARRADWGDRWP 275
|
Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria. Length = 275 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 97 LDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQAL 156
LD G GTG+ AL E P + V+ S + A + ++
Sbjct: 1 LDIGCGTGTLLRALLEALPGL--EYTGVDISPAALEAAAERLAALGL----LDAVRVRLD 54
Query: 157 NKDISKSEREH-DLVIASYVLGEVPSLQDRITIVRQLWDLTRD 198
D + D+V+AS VL + D ++R L L +
Sbjct: 55 VLDAIDLDPGSFDVVVASNVLHHLA---DPRAVLRNLRRLLKP 94
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.003
Identities = 27/120 (22%), Positives = 42/120 (35%), Gaps = 22/120 (18%)
Query: 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSM-QRAGQSLMQGPKDLPLIHSY 150
A+VLD G GTGS L ++P + +V V+ S M + A ++
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGA--RVTGVDLSPEMLELARENAKLA--------LG 50
Query: 151 NSIQALNKDISKSEREH---DLVIASYVLGEVPSLQDRITIVRQLWDLTRD--VLVLVEP 205
I + D + D V G++ L + L L + LVL
Sbjct: 51 PRITFVQGDAPDALDLLEGFDAVFIGGGGGDLLEL------LDALASLLKPGGRLVLNAV 104
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.003
Identities = 36/132 (27%), Positives = 47/132 (35%), Gaps = 29/132 (21%)
Query: 78 YRVLCEVRRRL--PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQ 135
R L + RL +VLD G GTG LRE V V+PS
Sbjct: 6 ERFLARLLARLLPRLKPGGRVLDIGCGTGILLRLLRERGFD----VTGVDPS-PAAVLIF 60
Query: 136 SLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL 195
SL P L Y DL+ A VL L D +++QL +L
Sbjct: 61 SLFDAPDPAVLAGKY-----------------DLITAFEVLE---HLPDPPALLQQLREL 100
Query: 196 TRD--VLVLVEP 205
+ VL++ P
Sbjct: 101 LKPGGVLLISTP 112
|
This family appears to be a methyltransferase domain. Length = 154 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 462 | |||
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 100.0 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 100.0 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 100.0 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 99.68 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.49 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.49 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.44 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.38 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.37 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.36 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.34 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.3 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.27 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.26 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.26 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.25 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.21 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.18 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.18 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.18 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.18 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.17 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.16 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.16 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.15 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.14 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.13 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.13 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.12 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.11 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.1 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.09 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.08 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.08 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.08 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.06 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.06 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.03 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.03 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.03 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.02 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.99 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.99 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.97 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.97 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.96 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.96 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.95 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.95 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.93 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.93 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.92 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.92 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.89 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.86 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.85 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.84 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.83 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.83 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.82 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.82 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.8 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.8 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.79 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.76 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.76 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.75 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.73 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.71 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.69 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.69 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.68 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.68 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.67 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.66 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.65 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.64 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.63 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.63 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.63 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.62 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.62 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.59 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.58 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.58 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.55 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.55 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.52 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.51 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.49 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.48 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.46 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.46 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.46 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.46 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.44 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.41 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.4 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.39 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.38 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.37 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.37 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.35 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.35 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.32 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.29 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.29 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.29 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.28 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.28 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.27 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.27 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.26 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.25 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.25 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.23 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.22 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.22 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.2 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.19 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.17 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.17 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.16 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.13 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.11 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.09 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.08 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.08 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.07 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.07 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.07 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.05 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.03 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.03 | |
| PLN02366 | 308 | spermidine synthase | 98.02 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.02 | |
| PLN02476 | 278 | O-methyltransferase | 97.98 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 97.97 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 97.96 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.94 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.94 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.93 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.93 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 97.9 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 97.89 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.88 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.87 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 97.87 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.86 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.85 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.84 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.84 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.84 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.83 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.79 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.78 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.78 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.77 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.77 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 97.76 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 97.76 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.74 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.74 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.73 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 97.7 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.68 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.67 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.67 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.61 | |
| PLN02823 | 336 | spermine synthase | 97.59 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.58 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.56 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.53 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.52 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.48 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.43 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.29 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.23 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.09 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.07 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.05 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.05 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.02 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.01 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.96 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.96 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 96.95 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.93 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 96.9 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.88 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.88 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 96.81 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 96.8 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.76 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.74 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 96.74 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.71 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.66 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.53 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.4 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.37 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.33 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.32 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 96.18 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.15 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.09 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.08 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.07 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.89 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 95.81 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.76 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 95.71 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.63 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 95.59 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.53 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.52 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 95.35 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 95.28 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 95.2 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 94.93 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 94.88 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 94.85 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 94.75 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 94.58 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 94.37 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 94.18 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 94.16 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 94.13 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 94.11 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 94.11 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 94.05 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 93.92 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 93.83 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 93.66 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 93.53 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 93.44 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 93.43 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 93.36 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 92.61 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 92.55 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 92.15 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 92.03 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 91.97 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 91.72 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 91.31 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 90.58 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 90.56 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 90.49 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 90.27 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 90.23 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 89.8 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 89.4 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 88.28 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 87.9 | |
| PHA01634 | 156 | hypothetical protein | 87.88 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 87.42 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 87.32 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 87.22 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 87.12 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 86.91 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 86.89 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 86.71 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 86.17 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 85.57 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 84.3 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 83.9 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 83.85 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 83.78 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 83.45 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 83.45 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 82.92 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 82.08 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 82.01 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 80.91 |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-74 Score=565.77 Aligned_cols=272 Identities=47% Similarity=0.856 Sum_probs=237.6
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 61 ETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 61 e~~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+++||++++||++|+++++||.||++++|+|.|.+|||+|||||+++||++++|+ ...++++||.|+.|+++++.++++
T Consensus 2 ~a~aY~~~r~p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 2 EALAYLAARMPATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999999999 788999999999999999999987
Q ss_pred CCCCCceecchhHhh-hhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHH
Q 012511 141 PKDLPLIHSYNSIQA-LNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRS 219 (462)
Q Consensus 141 ~~~~~~i~~~~~~~~-l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~ 219 (462)
........ .... ..... ...+.||||++|+|+||++ +.|..++++||+++.++|||||||||.||+.|++||+
T Consensus 81 ~~~~~~~~---~~~~~~~~~~--~~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~~LVlVEpGt~~Gf~~i~~aR~ 154 (274)
T PF09243_consen 81 GPNNRNAE---WRRVLYRDFL--PFPPDDLVIASYVLNELPS-AARAELVRSLWNKTAPVLVLVEPGTPAGFRRIAEARD 154 (274)
T ss_pred ccccccch---hhhhhhcccc--cCCCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccCcEEEEcCCChHHHHHHHHHHH
Confidence 54322110 0011 11111 2234599999999999997 8999999999999888999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhccccccccccchhhhccCCcEEEccCCCCCCCCCCCCCCcceeeEeeccChhHHHhhhcCCCCC
Q 012511 220 HILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPL 299 (462)
Q Consensus 220 ~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvAPCpH~~~CPl~~~~~~ChF~qr~~rp~~~r~~k~~~g~~~ 299 (462)
+|+ +.++||+|||||++.|||..+.+||||+||++|+++++..| ++.
T Consensus 155 ~l~-----------------------------~~~~~v~APCph~~~CP~~~~~~wChf~~r~~~~~~~~~~k---~~~- 201 (274)
T PF09243_consen 155 QLL-----------------------------EKGAHVVAPCPHDGPCPLLASEDWCHFSQRVERSPFHRLAK---SAG- 201 (274)
T ss_pred HHh-----------------------------hCCCceECCCccCCCCCCCCCCCcccceeeeccchhhhhcc---ccc-
Confidence 985 45899999999999999998779999999999999988776 222
Q ss_pred CCcccceeEEEEEEeCCCCCCCCCCCCCcchhhhhhhccCCCCccchhHHHHHHhhhhcccccccccccccccccccccC
Q 012511 300 RGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDD 379 (462)
Q Consensus 300 ~~~ed~kfSYvvlrkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (462)
.++||+|||||+.+|+++.
T Consensus 202 ~~~e~ekfSYl~~~~~~~~------------------------------------------------------------- 220 (274)
T PF09243_consen 202 LPYEDEKFSYLAKGRGPRA------------------------------------------------------------- 220 (274)
T ss_pred CCccccceeeeeecccccc-------------------------------------------------------------
Confidence 4899999999666554321
Q ss_pred cCCCcccccccccccCcccCCCCccccccCceeeCCcEEEeeccCCCCCCCCCceeEEEEeccCCchhhhhhhhcCCCCC
Q 012511 380 TVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDL 459 (462)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~wpRii~~P~kr~ghV~ld~Ct~~~~~~~~G~ler~~v~ks~~~~~Y~~ARks~wGDl 459 (462)
..|||||+||+||+|||+|||||| +|+|+|+|||||+| ++|++|||+.|||+
T Consensus 221 ---------------------~~~~Rii~~p~~~~~hv~~~~C~~------~G~l~~~~v~K~~g-~~y~~aRk~~wGD~ 272 (274)
T PF09243_consen 221 ---------------------PAWPRIIRPPLKRKGHVICDLCTP------DGQLERVVVTKRHG-ELYRCARKSKWGDL 272 (274)
T ss_pred ---------------------cccchhcchhhccCCcEEEEEECC------CCCEEEEEEcccch-HHHHHHHhccccCC
Confidence 139999999999999999999998 99999999999888 89999999999999
Q ss_pred CC
Q 012511 460 WP 461 (462)
Q Consensus 460 wp 461 (462)
||
T Consensus 273 ~p 274 (274)
T PF09243_consen 273 WP 274 (274)
T ss_pred CC
Confidence 98
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-68 Score=515.47 Aligned_cols=318 Identities=29% Similarity=0.523 Sum_probs=243.9
Q ss_pred ccCHHHHHHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHH
Q 012511 56 KYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQ 135 (462)
Q Consensus 56 ~y~~~e~~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak 135 (462)
..+++++.||++.+||.+|++++++|.+|.++.|+|.|++|||+|.|||+++||++.+||+ ...++.++.|+.+.+++-
T Consensus 77 ~~tdm~V~Ayias~lp~~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pd-l~sa~ile~sp~lrkV~~ 155 (484)
T COG5459 77 CRTDMAVKAYIASRLPQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPD-LKSAVILEASPALRKVGD 155 (484)
T ss_pred ecchHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCC-chhhhhhccCHHHHHHHH
Confidence 3588899999999999999999999999999999999999999999999999999999995 778999999999999988
Q ss_pred HhhcCCCC--CCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCch
Q 012511 136 SLMQGPKD--LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 136 ~ll~~~~~--~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf 211 (462)
.+..+..- .++.... ++.-.-.++ ....|+|||+.+-|.+..+.......|++||+. +||.|||||+|||.||
T Consensus 156 tl~~nv~t~~td~r~s~--vt~dRl~lp-~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 156 TLAENVSTEKTDWRASD--VTEDRLSLP-AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred HHHhhcccccCCCCCCc--cchhccCCC-ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 87765321 1111111 110011222 234677777777676666666677799999997 7899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccccccccccchhhhccCCcEEEccCCCCCCCCCCCC----CCcceeeEeeccChh
Q 012511 212 SIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENS----GKYCHFVQRLQRTTS 287 (462)
Q Consensus 212 ~~I~~aR~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvAPCpH~~~CPl~~~----~~~ChF~qr~~rp~~ 287 (462)
++|.+||+++|..++.. ++ ....+||+|||||+++||+... .+||||+|++.||+|
T Consensus 233 ~~I~rAR~~ll~~~~~~---------------~e-----~~~~ahiiAPCPH~~~CPl~v~ng~~~~~C~F~q~v~rs~f 292 (484)
T COG5459 233 ERILRARQILLAPGNFP---------------DE-----FNYFAHIIAPCPHQRKCPLQVPNGKDLDWCHFSQRVARSKF 292 (484)
T ss_pred HHHHHHHHHHhcCCCCc---------------cc-----cccceeeeccCCCCCCCCccCCCCccccccchhHhhccCcc
Confidence 99999999999643210 11 2456999999999999999764 389999999999998
Q ss_pred HHHhhhcCCCCCCCcccceeEEEEEEeCCCCCCCCCCCCCcchhhhhhhccCCCCccchhHHHH-HHhhhhccccccccc
Q 012511 288 QRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDL-LRLQAEAEVEPCKKE 366 (462)
Q Consensus 288 ~r~~k~~~g~~~~~~ed~kfSYvvlrkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 366 (462)
-+.++.-.- ....+...|+|++++|+... +| +.+ .|+.+|++.+.
T Consensus 293 s~~~~~Rlh--r~s~D~s~~~~~~lkr~~~r--p~--------------------------e~~~er~~~DE~~l~---- 338 (484)
T COG5459 293 SIELKKRLH--RTSKDGSQGNASRLKRRAGR--PW--------------------------EILFERSHKDEKFLK---- 338 (484)
T ss_pred hhHHHHHHH--hhhccccccchhhhhhccCC--Ch--------------------------hhhhhhccchHHHHH----
Confidence 877763110 02345678999999987532 22 111 12222322110
Q ss_pred ccccccccccccCcCCCcccccccccccCcccCCCCccccccCceeeCCcEEEeeccCCCCCCCCCceeEEEEeccCCch
Q 012511 367 DLVNYESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPT 446 (462)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wpRii~~P~kr~ghV~ld~Ct~~~~~~~~G~ler~~v~ks~~~~ 446 (462)
+...+.+-..+|||||.||+||+|||+||+|.| +|++|+|+||||+||+
T Consensus 339 -------------------------~~~v~~pt~~~wpRII~pP~kr~GhV~idlC~~------dg~le~~lvtKs~gk~ 387 (484)
T COG5459 339 -------------------------EAAVRRPTANSWPRIIAPPVKRKGHVMIDLCAP------DGELEEWLVTKSDGKQ 387 (484)
T ss_pred -------------------------HHHhcCccccccchhcCCccCCCCeEEEeecCC------cchhhhhcccccccHH
Confidence 000001113589999999999999999999998 9999999999999999
Q ss_pred hhhhhhhcCCCCCCCC
Q 012511 447 LHRLAKKSLWGDLWPF 462 (462)
Q Consensus 447 ~Y~~ARks~wGDlwp~ 462 (462)
+||+||||.||||||.
T Consensus 388 ~yrlARks~wGDlfas 403 (484)
T COG5459 388 IYRLARKSDWGDLFAS 403 (484)
T ss_pred HHHHHHhhccchhhhh
Confidence 9999999999999984
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-52 Score=420.58 Aligned_cols=300 Identities=29% Similarity=0.533 Sum_probs=246.7
Q ss_pred cccccCcccccCHHHH-HHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEe
Q 012511 47 KSAYGDIGLKYRDDET-IAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVE 125 (462)
Q Consensus 47 ~~~y~~~~~~y~~~e~-~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD 125 (462)
.++|.|..+.|+..+. .+|...++..+|+.+.+++.|+..+-|.|+|..++|||+|.|+..|++...|+.....|++||
T Consensus 154 ~~iy~s~~~~~t~~~s~~~~~~arld~gYa~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vd 233 (491)
T KOG2539|consen 154 KNIYPSQSLEYTSPESLNVYPLARLDHGYALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVD 233 (491)
T ss_pred ccccccccccccCccccccccccccccchHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeec
Confidence 4799999999988865 899999999999999999999999999999999999999999999999999998788999999
Q ss_pred CCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCC-CCcccEEEecccccCCCCHHHHHHHHHHHHhc---CCCE
Q 012511 126 PSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKS-EREHDLVIASYVLGEVPSLQDRITIVRQLWDL---TRDV 199 (462)
Q Consensus 126 ~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~-~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~---~gG~ 199 (462)
.|..|+......+++. .+.+.++.. -...+.+|.. ...||+||++|.|+++.+...|..+++++|+. +|++
T Consensus 234 rs~~~~~~~e~~lr~~~~~g~~~v~~~---~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~ 310 (491)
T KOG2539|consen 234 RSRAMLKQSEKNLRDGSHIGEPIVRKL---VFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYF 310 (491)
T ss_pred cchHHHHHHHHhhcChhhcCchhcccc---chhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCce
Confidence 9999999999888872 233444331 1123334433 44599999999999999999999999999998 4679
Q ss_pred EEEEecCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccccccccchhhhccCCcEEEccCCCCCCCCCCCCCC---cc
Q 012511 200 LVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGK---YC 276 (462)
Q Consensus 200 LVlVEpGtp~Gf~~I~~aR~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvAPCpH~~~CPl~~~~~---~C 276 (462)
+||||+|++.||+.+++||+.+|..+.. .. . ....++|||||||+..||+...+. .|
T Consensus 311 lViIe~g~~~g~e~l~eaR~~~l~~~~~----------------vd--~--~~~~~~vlapcPh~l~cPl~~d~~~~~~C 370 (491)
T KOG2539|consen 311 LVIIEKGTTMGLELLTEARQNLLDQEEE----------------VD--Y--EDVTGPVLAPCPHDLRCPLLRDSAVIIVC 370 (491)
T ss_pred EEEEecCCccchhhHHHHHHhcccchhc----------------CC--c--cccccceecCCCcccCCccccCCCccccc
Confidence 9999999999999999999999863310 00 0 124589999999999999976543 69
Q ss_pred eeeEeeccChhHHHhhhcCCCCCCCccc--ceeEEEEEEeCCCCCCCCCCCCCcchhhhhhhccCCCCccchhHHHHHHh
Q 012511 277 HFVQRLQRTTSQRAYKRSKSEPLRGFED--EKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRL 354 (462)
Q Consensus 277 hF~qr~~rp~~~r~~k~~~g~~~~~~ed--~kfSYvvlrkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (462)
+|+++++|-+. .|..+...++ .+|||+|+.||.+..
T Consensus 371 ~f~~~~~~l~~-------s~~~~~~e~~r~~~~sy~I~e~s~~~~----------------------------------- 408 (491)
T KOG2539|consen 371 TFDARYRPLPK-------SGGKLEDEEDRKSAYSYLILEESSRQS----------------------------------- 408 (491)
T ss_pred ccchhcccccc-------CCCcCchhhhhhhhhHHHHHhhccccc-----------------------------------
Confidence 99999998441 1222211222 248888877766420
Q ss_pred hhhcccccccccccccccccccccCcCCCcccccccccccCcccCCCCccccccCceeeCCcEEEeeccCCCCCCCCCce
Q 012511 355 QAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSF 434 (462)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wpRii~~P~kr~ghV~ld~Ct~~~~~~~~G~l 434 (462)
+.+|||||+||+||+|||+||+||| +|.+
T Consensus 409 ---------------------------------------------~~~wpRIi~p~~kr~~hv~~dlC~p------~g~~ 437 (491)
T KOG2539|consen 409 ---------------------------------------------TSSWPRIIKPPLKRGGHVTCDLCTP------NGPL 437 (491)
T ss_pred ---------------------------------------------cCCCcccccCccccCCeeEEecCCC------CCCe
Confidence 2479999999999999999999998 8999
Q ss_pred eEEEEeccCCc-hhhhhhhhcCCCCCCCC
Q 012511 435 QHLVFTRSKNP-TLHRLAKKSLWGDLWPF 462 (462)
Q Consensus 435 er~~v~ks~~~-~~Y~~ARks~wGDlwp~ 462 (462)
+|||+|||+++ .+|.+|||+.|||||||
T Consensus 438 q~~~~Tkskhg~dlys~ar~s~wgdl~pl 466 (491)
T KOG2539|consen 438 QRRVLTKSKHGKDLYSCARKSRWGDLLPL 466 (491)
T ss_pred eEEEEecccccHHHHHHhhhhhccccccc
Confidence 99999999887 69999999999999996
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-18 Score=175.94 Aligned_cols=351 Identities=19% Similarity=0.165 Sum_probs=208.6
Q ss_pred ccceeeecccccccccccceeccccchhhhcCCcccHHhhhhhhhcccccCcccccCHHHHHHHHHhcCchhHHHHHHHH
Q 012511 2 KRKVLRLSESFNAIKGVNLTLTESTSKELFEDPLKSVEQSKRWKIKSAYGDIGLKYRDDETIAYVASRMPAVYSACYRVL 81 (462)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~~~~~~w~~~~~y~~~~~~y~~~e~~AYla~r~p~~Ya~~~~vL 81 (462)
|.+|...+..|+-++..++++..+++..+=+.. .+. +...|+.+.-+. .|.+....+|-...||.......+.+
T Consensus 41 ~~q~~k~~~~~~~~~~~e~qLP~~a~~sl~~~~-~~~-~~~~~~~~~q~~----~l~~~~s~~~~~~~~pe~i~~~~r~v 114 (491)
T KOG2539|consen 41 KGQIRKFREHVGKDKRTEVQLPQQAANSLESTR-LSL-EPQVKKYQHQSQ----QLASYLSSRTHLPIMPEEISNKSRHV 114 (491)
T ss_pred hhhcccchhcccccccccccCchhhhhhhhhhh-hhc-ccchhhHHHHHH----HhhhhhhhhhcCCcChHHHhHHHHHH
Confidence 567889999999999999999988877543322 232 355666655544 37777777888888999998888888
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 161 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~ 161 (462)
.+..++ |++.+...||+|.|+++.+|+-..+|+-....+--+-.|..|.-.+...+..+...+
T Consensus 115 ~~~~~~-~~i~e~~sld~~~~~~s~~~~~~~~~~i~~~~~~~iy~s~~~~~t~~~s~~~~~~ar---------------- 177 (491)
T KOG2539|consen 115 IEKGKG-PGIDELASLDVFPGTVSKVEENKFLKEIIYDLHKNIYPSQSLEYTSPESLNVYPLAR---------------- 177 (491)
T ss_pred HHHhcC-CCCCCccccccCCCchhhhhhhhHHHHHHHHHhccccccccccccCccccccccccc----------------
Confidence 877776 788889999999888888887554443111122233444444322221111111111
Q ss_pred CCCCcccEEEecccccCCCCHHHHHHHHHHHHhc---CCCEEEEEecCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 012511 162 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSK 238 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~---~gG~LVlVEpGtp~Gf~~I~~aR~~lL~~~~~~~~~~~~~~~~ 238 (462)
....|-+|+.++.+....+++.+-+++..+|.- .++.++++.++|..+|..|-+.|.++...+.- .+
T Consensus 178 -ld~gYa~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~--lr------- 247 (491)
T KOG2539|consen 178 -LDHGYALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKN--LR------- 247 (491)
T ss_pred -cccchHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHh--hc-------
Confidence 122333444444444433333333344444432 12344444555555555555555555432110 00
Q ss_pred cccccccchhhhccCCcEEEcc-CCCCCCCCCCCCC----CcceeeEeeccChhHHHhhhcCCCCC-CCcccceeEEEEE
Q 012511 239 DTNKETSKDLVTLRSGVHIVAP-CPHEGRCPLENSG----KYCHFVQRLQRTTSQRAYKRSKSEPL-RGFEDEKFSFVAF 312 (462)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~vvAP-CpH~~~CPl~~~~----~~ChF~qr~~rp~~~r~~k~~~g~~~-~~~ed~kfSYvvl 312 (462)
+ ....|.+++++ |+|.+.||...+. ..|+|.+-..-.++.|..-.. .+ +......|+||++
T Consensus 248 -----~-----~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~---s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 248 -----D-----GSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPE---SLWRKTDRSGYFLVII 314 (491)
T ss_pred -----C-----hhhcCchhccccchhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhH---HHHHhccCCCceEEEE
Confidence 0 02457899999 9999999987653 378888765433333221100 00 0011224667777
Q ss_pred EeCCCCCCCCCCCCCcchhhhhhhccCCCCccchhHHHHHHhhhhcccccccccccccccccccccCcCCCccccccccc
Q 012511 313 RRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEE 392 (462)
Q Consensus 313 rkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (462)
.+|. +|+++.+.++..-.-+++.++||++. .
T Consensus 315 e~g~---------~~g~e~l~eaR~~~l~~~~~vd~~~~--------------------~-------------------- 345 (491)
T KOG2539|consen 315 EKGT---------TMGLELLTEARQNLLDQEEEVDYEDV--------------------T-------------------- 345 (491)
T ss_pred ecCC---------ccchhhHHHHHHhcccchhcCCcccc--------------------c--------------------
Confidence 6665 46677777532222222222332111 0
Q ss_pred ccCcccCCCCccccccCceeeCCcEEEeeccCCCCCCCCCceeEEEEeccCCchhhhhhhhcCCCCCC
Q 012511 393 ETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLW 460 (462)
Q Consensus 393 ~~~~~~~~~~wpRii~~P~kr~ghV~ld~Ct~~~~~~~~G~ler~~v~ks~~~~~Y~~ARks~wGDlw 460 (462)
.... -.||+.+..|+++.+||+. +|+- +-.+++ +|+|.++.+|+.+|||.|+++.
T Consensus 346 ~~vl----apcPh~l~cPl~~d~~~~~-~C~f------~~~~~~--l~~s~~~~~~e~~r~~~~sy~I 400 (491)
T KOG2539|consen 346 GPVL----APCPHDLRCPLLRDSAVII-VCTF------DARYRP--LPKSGGKLEDEEDRKSAYSYLI 400 (491)
T ss_pred ccee----cCCCcccCCccccCCCccc-cccc------chhccc--cccCCCcCchhhhhhhhhHHHH
Confidence 0111 2599999999999999999 9996 777888 9999999999999999999875
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-14 Score=135.67 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=79.7
Q ss_pred hcccccCcccccCHH-HHHHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEE
Q 012511 46 IKSAYGDIGLKYRDD-ETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLV 124 (462)
Q Consensus 46 ~~~~y~~~~~~y~~~-e~~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~V 124 (462)
++.+|..++..|+-. ....+-..+.... .++.. +....+.+|||+|||||..+..++...+ ...+|+++
T Consensus 9 v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~-----~~~~~----~~~~~g~~vLDv~~GtG~~~~~l~~~~~-~~~~v~~v 78 (233)
T PF01209_consen 9 VRKMFDRIAPRYDRMNDLLSFGQDRRWRR-----KLIKL----LGLRPGDRVLDVACGTGDVTRELARRVG-PNGKVVGV 78 (233)
T ss_dssp ----------------------------S-----HHHHH----HT--S--EEEEET-TTSHHHHHHGGGSS----EEEEE
T ss_pred HHHHHHHHHHHhCCCccccCCcHHHHHHH-----HHHhc----cCCCCCCEEEEeCCChHHHHHHHHHHCC-CccEEEEe
Confidence 667888888888765 2333332222111 12221 1223467999999999999988877654 34699999
Q ss_pred eCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 125 EPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 125 D~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|+|+.|++.|++.+.... ++.++.. ....+|..+++||+|++++.|+++++....+.-+.++++ |||.|+|
T Consensus 79 D~s~~ML~~a~~k~~~~~~~~i~~v~~------da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLk-PGG~l~i 151 (233)
T PF01209_consen 79 DISPGMLEVARKKLKREGLQNIEFVQG------DAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLK-PGGRLVI 151 (233)
T ss_dssp ES-HHHHHHHHHHHHHTT--SEEEEE-------BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEE-EEEEEEE
T ss_pred cCCHHHHHHHHHHHHhhCCCCeeEEEc------CHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcC-CCeEEEE
Confidence 999999999999876532 3333322 123466778999999999999999987776767777775 7999999
Q ss_pred EecCCCCch
Q 012511 203 VEPGTPQGS 211 (462)
Q Consensus 203 VEpGtp~Gf 211 (462)
+|.+.|...
T Consensus 152 le~~~p~~~ 160 (233)
T PF01209_consen 152 LEFSKPRNP 160 (233)
T ss_dssp EEEEB-SSH
T ss_pred eeccCCCCc
Confidence 999999874
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=126.50 Aligned_cols=151 Identities=16% Similarity=0.207 Sum_probs=109.9
Q ss_pred hhcccccCcccccCHHH-HHHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEE
Q 012511 45 KIKSAYGDIGLKYRDDE-TIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNL 123 (462)
Q Consensus 45 ~~~~~y~~~~~~y~~~e-~~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~ 123 (462)
.++.+|..+...|+-.. ...+ ..-...-.++...+...++.+|||+|||||..+..+++..+ ..+|++
T Consensus 12 ~v~~vF~~ia~~YD~~n~~~S~---------g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g--~g~v~~ 80 (238)
T COG2226 12 KVQKVFDKVAKKYDLMNDLMSF---------GLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG--TGEVVG 80 (238)
T ss_pred HHHHHHHhhHHHHHhhcccccC---------cchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC--CceEEE
Confidence 45666777776776553 1111 11112223333333323578999999999999999998776 579999
Q ss_pred EeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEE
Q 012511 124 VEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLV 201 (462)
Q Consensus 124 VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LV 201 (462)
+|+|+.|++.|++.+.+.. ++.++..+ ...+|+++++||+|+++|.|.++++.+..+.-+.++++ |||.++
T Consensus 81 ~D~s~~ML~~a~~k~~~~~~~~i~fv~~d------Ae~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlK-pgG~~~ 153 (238)
T COG2226 81 LDISESMLEVAREKLKKKGVQNVEFVVGD------AENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLK-PGGRLL 153 (238)
T ss_pred EECCHHHHHHHHHHhhccCccceEEEEec------hhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhc-CCeEEE
Confidence 9999999999999987643 23334322 23578899999999999999999988887777777776 799999
Q ss_pred EEecCCCCchHH
Q 012511 202 LVEPGTPQGSSI 213 (462)
Q Consensus 202 lVEpGtp~Gf~~ 213 (462)
++|.+.|.....
T Consensus 154 vle~~~p~~~~~ 165 (238)
T COG2226 154 VLEFSKPDNPVL 165 (238)
T ss_pred EEEcCCCCchhh
Confidence 999999876443
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=124.05 Aligned_cols=162 Identities=15% Similarity=0.217 Sum_probs=101.9
Q ss_pred eeccccchhhhcCCcccHHhhhhhhhcccccCcccccCHHHHHHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEEC
Q 012511 21 TLTESTSKELFEDPLKSVEQSKRWKIKSAYGDIGLKYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFG 100 (462)
Q Consensus 21 ~~~~~~~~~l~~d~~~~~~~~~~w~~~~~y~~~~~~y~~~e~~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG 100 (462)
...|++..||||++..+.+.+.. .|........+...+...+... +..+ +...++.+|||+|
T Consensus 7 ~~~r~~~~e~~d~~~~~~~~~~~------------~~~~~~~~n~~~~~~~~~~~~~---~~~~---l~~~~~~~iLDlG 68 (232)
T PRK06202 7 SRRRDRQPEVMDDPGCDPARLDR------------TYAGFRRVNRIVAGWRGLYRRL---LRPA---LSADRPLTLLDIG 68 (232)
T ss_pred hccccCChhhccCCCcCHHHHHH------------HHHHHHHHHHHhcccHHHHHHH---HHHh---cCCCCCcEEEEec
Confidence 46799999999998776555544 3333322212222222222222 2111 1123467999999
Q ss_pred CchhHHHHHHHHhCCC--CccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEecccccC
Q 012511 101 AGTGSAFWALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGE 178 (462)
Q Consensus 101 ~G~G~~~~al~~~~~~--~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~e 178 (462)
||+|..+..++...+. ...+|+++|+|+.|++.|++..... ++.+.... . ..++..+++||+|+++++|+|
T Consensus 69 cG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~-----~-~~l~~~~~~fD~V~~~~~lhh 141 (232)
T PRK06202 69 CGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-GVTFRQAV-----S-DELVAEGERFDVVTSNHFLHH 141 (232)
T ss_pred cCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-CCeEEEEe-----c-ccccccCCCccEEEECCeeec
Confidence 9999988777654321 1248999999999999998865432 23222111 1 112334578999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 179 VPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 179 l~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
+++ .+...+++.+.+...|.+++.+...+
T Consensus 142 ~~d-~~~~~~l~~~~r~~~~~~~i~dl~~~ 170 (232)
T PRK06202 142 LDD-AEVVRLLADSAALARRLVLHNDLIRS 170 (232)
T ss_pred CCh-HHHHHHHHHHHHhcCeeEEEeccccC
Confidence 974 44567888888776677777776555
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=120.83 Aligned_cols=144 Identities=17% Similarity=0.257 Sum_probs=99.6
Q ss_pred cCHHHHHHH--HHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHH
Q 012511 57 YRDDETIAY--VASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAG 134 (462)
Q Consensus 57 y~~~e~~AY--la~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~A 134 (462)
+++..+..| ...++-+.|..+..++..+..+... ...+|||+|||+|..+..++........+++++|+|+.|++.|
T Consensus 20 f~~~~a~~yd~~~~~~~p~y~~~~~~~~~~~~~~~~-~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A 98 (247)
T PRK15451 20 FDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERC 98 (247)
T ss_pred cChHHHHhhhhHHHhcCCChHHHHHHHHHHHHHhCC-CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHH
Confidence 444334344 2456678999998888877665432 3579999999999988777764322346899999999999999
Q ss_pred HHhhcCCC---CCCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 135 QSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 135 k~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
+..+.... ++.++.. ++. .++ ...+|+|+++++|++++ ..++..+++++.+. +||.|++.|.-.+.
T Consensus 99 ~~~~~~~~~~~~v~~~~~-----d~~-~~~--~~~~D~vv~~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~ 169 (247)
T PRK15451 99 RRHIDAYKAPTPVDVIEG-----DIR-DIA--IENASMVVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSEKFSFE 169 (247)
T ss_pred HHHHHhcCCCCCeEEEeC-----Chh-hCC--CCCCCEEehhhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 99886532 2222221 122 122 23589999999999997 55566666666664 79999999965544
Q ss_pred c
Q 012511 210 G 210 (462)
Q Consensus 210 G 210 (462)
+
T Consensus 170 ~ 170 (247)
T PRK15451 170 D 170 (247)
T ss_pred c
Confidence 4
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-12 Score=107.74 Aligned_cols=105 Identities=24% Similarity=0.266 Sum_probs=75.0
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC---CCCCceecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---KDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~---~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+.+|||+|||+|..+..+++.++ ..++++||.|++|++.|++.+... .++.+++.. + ........+||+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d-----~-~~~~~~~~~~D~ 73 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFP--GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGD-----A-EFDPDFLEPFDL 73 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESC-----C-HGGTTTSSCEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECc-----c-ccCcccCCCCCE
Confidence 47999999999999998888654 468999999999999999988321 233333322 2 111223457999
Q ss_pred EEecc-cccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 170 VIASY-VLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 170 Vias~-vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
|++.. +++++...+++..+++++++. |||.|||-++
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99999 677665455666667766664 7999998653
|
... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-11 Score=119.32 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=86.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC-----CCCCCceecchhHhhhhhccCCCCCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG-----PKDLPLIHSYNSIQALNKDISKSERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~-----~~~~~~i~~~~~~~~l~~~l~~~~~~ 166 (462)
++.+|||+|||+|..+..+.+.++ ...+|+++|+|++|++.|++.... ..++.++.. +. ..++..+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~-~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~-----d~-~~lp~~~~s 145 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVG-SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEG-----DA-TDLPFDDCY 145 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEc-----cc-ccCCCCCCC
Confidence 457999999999998877777554 235899999999999999876431 112222221 12 234556778
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 167 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
||+|+++++|+++++....+.-+.++++ |||.|+++|...+... .+....+++
T Consensus 146 fD~V~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~d~~~~~~~-~~~~~~~~~ 198 (261)
T PLN02233 146 FDAITMGYGLRNVVDRLKAMQEMYRVLK-PGSRVSILDFNKSTQP-FTTSMQEWM 198 (261)
T ss_pred EeEEEEecccccCCCHHHHHHHHHHHcC-cCcEEEEEECCCCCcH-HHHHHHHHH
Confidence 9999999999999987776666666665 7999999999887652 233334443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-11 Score=116.13 Aligned_cols=143 Identities=18% Similarity=0.283 Sum_probs=98.1
Q ss_pred ccCHHHHHHHHH--hcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHH
Q 012511 56 KYRDDETIAYVA--SRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRA 133 (462)
Q Consensus 56 ~y~~~e~~AYla--~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~ 133 (462)
.|++..+..|-. .+.-+.|..+...+..+..+... ...+|||+|||+|..+..+++.+.....+++++|+|+.|++.
T Consensus 16 ~~~~~~a~~y~~~~~~~~p~y~~~~~~~~~l~~~~~~-~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~ 94 (239)
T TIGR00740 16 IFDENVAEVFPDMIQRSVPGYSNIITAIGMLAERFVT-PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVER 94 (239)
T ss_pred ccChHHHHhCcchhhccCCCHHHHHHHHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH
Confidence 344444444542 23345687888877777765532 446999999999999888887653235689999999999999
Q ss_pred HHHhhcCCCC---CCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 134 GQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 134 Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
|++.+..... +.++.. ++. .++ ...+|+|+++++|++++ +.++..+++++.+. +||.|++.|+..+
T Consensus 95 a~~~~~~~~~~~~v~~~~~-----d~~-~~~--~~~~d~v~~~~~l~~~~-~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 95 CRQHIAAYHSEIPVEILCN-----DIR-HVE--IKNASMVILNFTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred HHHHHHhcCCCCCeEEEEC-----Chh-hCC--CCCCCEEeeecchhhCC-HHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 9988765321 222221 222 122 23589999999999996 55566666666654 7999999997543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-11 Score=118.91 Aligned_cols=122 Identities=22% Similarity=0.270 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecc
Q 012511 74 YSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSY 150 (462)
Q Consensus 74 Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~ 150 (462)
++.+.+.+.++...++ ..+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|++.+...+ ++.++...
T Consensus 27 ~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~----g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d 101 (255)
T PRK11036 27 QAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL----GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCA 101 (255)
T ss_pred HHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcC
Confidence 3445555666666665 35689999999999988887763 4689999999999999998876532 22222211
Q ss_pred hhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 151 NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 151 ~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
..++. +...++||+|++..+|++++++...+..+.++++ |||.|+++...
T Consensus 102 --~~~l~---~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~n 151 (255)
T PRK11036 102 --AQDIA---QHLETPVDLILFHAVLEWVADPKSVLQTLWSVLR-PGGALSLMFYN 151 (255)
T ss_pred --HHHHh---hhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcC-CCeEEEEEEEC
Confidence 12221 1235689999999999999888776666777765 79999987654
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.2e-11 Score=112.03 Aligned_cols=106 Identities=21% Similarity=0.312 Sum_probs=81.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|..+..+...++ ..++++||+|+.|++.|++.+.+ ..++.. ++.. +...++||+|+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~--~~~v~giDiS~~~l~~A~~~~~~---~~~~~~-----d~~~--~~~~~sfD~V~ 110 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLP--FKHIYGVEINEYAVEKAKAYLPN---INIIQG-----SLFD--PFKDNFFDLVL 110 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCC--CCeEEEEECCHHHHHHHHhhCCC---CcEEEe-----eccC--CCCCCCEEEEE
Confidence 457999999999999888887654 35899999999999999875432 222221 1221 34567999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
++++|+|++ ++....+++++.+..+++++|.|.-.|..
T Consensus 111 ~~~vL~hl~-p~~~~~~l~el~r~~~~~v~i~e~~~~~~ 148 (204)
T TIGR03587 111 TKGVLIHIN-PDNLPTAYRELYRCSNRYILIAEYYNPSP 148 (204)
T ss_pred ECChhhhCC-HHHHHHHHHHHHhhcCcEEEEEEeeCCCc
Confidence 999999996 77888899999988888999988655443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.5e-11 Score=113.38 Aligned_cols=111 Identities=19% Similarity=0.232 Sum_probs=81.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..+++.++. ..+|+++|+|+.|++.|+..+.... ++.++.. +.. .++...++||+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~-----d~~-~~~~~~~~fD~ 117 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGP-EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHG-----NAM-ELPFDDNSFDY 117 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEe-----chh-cCCCCCCCccE
Confidence 4579999999999999988877642 4589999999999999998875432 2222221 111 13334578999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
|+++++++++++....+..+.++++ +||.++++|++.+.-
T Consensus 118 V~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~~~~~~~~ 157 (231)
T TIGR02752 118 VTIGFGLRNVPDYMQVLREMYRVVK-PGGKVVCLETSQPTI 157 (231)
T ss_pred EEEecccccCCCHHHHHHHHHHHcC-cCeEEEEEECCCCCC
Confidence 9999999999877665555555554 799999999887653
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.4e-11 Score=115.15 Aligned_cols=110 Identities=19% Similarity=0.299 Sum_probs=80.9
Q ss_pred HHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC
Q 012511 83 EVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 162 (462)
Q Consensus 83 eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~ 162 (462)
.+...++...+.+|||+|||+|..+..+...++ ..+|+++|+|+.|++.|+.. ++.++.. ++. .++
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p--~~~v~gvD~s~~~~~~a~~~-----~~~~~~~-----d~~-~~~- 85 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWP--GAVIEALDSSPEMVAAARER-----GVDARTG-----DVR-DWK- 85 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHhc-----CCcEEEc-----Chh-hCC-
Confidence 344445444568999999999999998888775 35899999999999999752 2333322 222 122
Q ss_pred CCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 163 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 163 ~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
..++||+|+++++|+++++....+..+.++++ |||.|++..++.
T Consensus 86 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~ 129 (255)
T PRK14103 86 PKPDTDVVVSNAALQWVPEHADLLVRWVDELA-PGSWIAVQVPGN 129 (255)
T ss_pred CCCCceEEEEehhhhhCCCHHHHHHHHHHhCC-CCcEEEEEcCCC
Confidence 34689999999999999977766666666665 799999987764
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.6e-11 Score=113.62 Aligned_cols=112 Identities=16% Similarity=0.288 Sum_probs=81.8
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
++..+....+ .+.+|||+|||||..+..+.+.. ..+|+++|+|++|++.|+... ..+.. +. ..
T Consensus 41 ~~~~l~~~~~--~~~~VLDlGcGtG~~~~~l~~~~---~~~v~gvD~S~~Ml~~a~~~~------~~~~~-----d~-~~ 103 (226)
T PRK05785 41 LVKTILKYCG--RPKKVLDVAAGKGELSYHFKKVF---KYYVVALDYAENMLKMNLVAD------DKVVG-----SF-EA 103 (226)
T ss_pred HHHHHHHhcC--CCCeEEEEcCCCCHHHHHHHHhc---CCEEEEECCCHHHHHHHHhcc------ceEEe-----ch-hh
Confidence 4444444333 25799999999999988887754 248999999999999998631 12221 12 13
Q ss_pred cCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCch
Q 012511 160 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 211 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf 211 (462)
+|..+++||+|+++++|+++++....+..+.++++ + .++++|.++|.+.
T Consensus 104 lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLk-p--~~~ile~~~p~~~ 152 (226)
T PRK05785 104 LPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR-K--QVGFIAMGKPDNV 152 (226)
T ss_pred CCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhc-C--ceEEEEeCCCCcH
Confidence 56677899999999999999988877777777776 3 4667888888764
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-11 Score=106.83 Aligned_cols=106 Identities=21% Similarity=0.354 Sum_probs=78.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccC--CCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDIS--KSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~--~~~~~f 167 (462)
+..+|||+|||+|..+..+++... ...++++||.|++|++.|+.+++... ++.++.. ++.. ++ .. .+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~-~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~-----d~~~-l~~~~~-~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELN-PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQG-----DIED-LPQELE-EKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHST-TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEES-----BTTC-GCGCSS-TTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcC-CCCEEEEEECcHHHHHHhhcccccccccccceEEe-----ehhc-cccccC-CCe
Confidence 357999999999999999885433 25689999999999999999876432 2333322 2222 32 12 689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
|+|++..+++++.+....+..+.++++ ++|.+++.++.
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 999999999999877666666666665 59999999887
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=107.59 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=71.4
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
..+.+|||+|||+|..+..+++ ...+|+++|.|+.|++.+++++.... ++..+. .++.. .+. ..+||
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~----~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~-----~d~~~-~~~-~~~fD 97 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAA----NGFDVTAWDKNPMSIANLERIKAAENLDNLHTAV-----VDLNN-LTF-DGEYD 97 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHH----CCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEe-----cChhh-CCc-CCCcC
Confidence 3468999999999998887776 24589999999999999998775432 121111 12221 222 35799
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEe
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVE 204 (462)
+|++++++++++ ...+..+++++.+. +||++++++
T Consensus 98 ~I~~~~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 98 FILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EEEEecchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999886 55555555555443 799987765
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=116.46 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=85.6
Q ss_pred HHHHHHHHHCCC-----CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecc
Q 012511 79 RVLCEVRRRLPG-----FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSY 150 (462)
Q Consensus 79 ~vL~eL~~rlp~-----~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~ 150 (462)
+.+.++...++. ..+.+|||+|||+|..+..+++.++ .+|++||+|+.|++.|+++.+... ++.++..
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g---~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~- 175 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYG---ANVKGITLSPVQAARANALAAAQGLSDKVSFQVA- 175 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEc-
Confidence 345555554432 3568999999999999888887553 489999999999999998875432 1222211
Q ss_pred hhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 151 NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 151 ~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+.. .++...++||+|++..+++|+++....+..+.++++ +||.|+|++..
T Consensus 176 ----D~~-~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~~ 225 (340)
T PLN02244 176 ----DAL-NQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAA-PGGRIIIVTWC 225 (340)
T ss_pred ----Ccc-cCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcC-CCcEEEEEEec
Confidence 221 244556799999999999999987766666666665 79999998754
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=111.31 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=77.6
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+...+|||+|||.|..+..++. ....|+++|.|+.+++.|+....... .+.+.. ...+++. ...++||+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr----~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~--~~~edl~----~~~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLAR----LGASVTGIDASEKPIEVAKLHALESGVNIDYRQ--ATVEDLA----SAGGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHH----CCCeeEEecCChHHHHHHHHhhhhccccccchh--hhHHHHH----hcCCCccE
Confidence 4568999999999988887776 35799999999999999997655432 222221 1122332 23379999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|+|..||.|+++++..+..+.+|.+ |||.+++-.+
T Consensus 128 V~cmEVlEHv~dp~~~~~~c~~lvk-P~G~lf~STi 162 (243)
T COG2227 128 VTCMEVLEHVPDPESFLRACAKLVK-PGGILFLSTI 162 (243)
T ss_pred EEEhhHHHccCCHHHHHHHHHHHcC-CCcEEEEecc
Confidence 9999999999999986666777765 7999998544
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.3e-11 Score=95.85 Aligned_cols=95 Identities=19% Similarity=0.276 Sum_probs=68.8
Q ss_pred EEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEecccc
Q 012511 97 LDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 176 (462)
Q Consensus 97 LDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL 176 (462)
||+|||+|..+..+.+. ...+|+++|+|++|++.+++...... ..++.. +.. .++.++++||+|++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~~~~~~~~~~-~~~~~~-----d~~-~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR---GGASVTGIDISEEMLEQARKRLKNEG-VSFRQG-----DAE-DLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT---TTCEEEEEES-HHHHHHHHHHTTTST-EEEEES-----BTT-SSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc---cCCEEEEEeCCHHHHHHHHhcccccC-chheee-----hHH-hCccccccccccccccce
Confidence 89999999999888885 25799999999999999999876532 222221 122 356678899999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 177 GEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 177 ~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
+++++....+..+.++++ +||.++|
T Consensus 71 ~~~~~~~~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 71 HHLEDPEAALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp GGSSHHHHHHHHHHHHEE-EEEEEEE
T ss_pred eeccCHHHHHHHHHHHcC-cCeEEeC
Confidence 999655555566666665 6999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=117.22 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=78.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+|||+|..+..++. ...+|++||+|++|++.|+...+... ++.++... .. .++...++||
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~----~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~d-----ae-~l~~~~~~FD 200 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR----MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTT-----AE-KLADEGRKFD 200 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecC-----HH-HhhhccCCCC
Confidence 456999999999998877765 24589999999999999997654221 23233221 11 2333457899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+|++.++|+|++++...+..+.++++ |||.++|....
T Consensus 201 ~Vi~~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist~n 237 (322)
T PLN02396 201 AVLSLEVIEHVANPAEFCKSLSALTI-PNGATVLSTIN 237 (322)
T ss_pred EEEEhhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 99999999999999888888888886 79999998764
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=106.75 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=70.3
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccE
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
...+.+|||+|||+|..+..+++. ..+|+++|.|+.|++.++++.... ++. +... ..++. ..+ ...+||+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~----g~~V~~iD~s~~~l~~a~~~~~~~-~~~-v~~~--~~d~~-~~~-~~~~fD~ 97 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLA----GYDVRAWDHNPASIASVLDMKARE-NLP-LRTD--AYDIN-AAA-LNEDYDF 97 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHHh-CCC-ceeE--eccch-hcc-ccCCCCE
Confidence 345689999999999988877762 358999999999999998876532 222 1100 11121 112 2357999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHh--cCCCEEEEEe
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVE 204 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~--~~gG~LVlVE 204 (462)
|+++.++++++ ...+..+++++.+ ++||++++++
T Consensus 98 I~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 98 IFSTVVFMFLQ-AGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred EEEecccccCC-HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 99999999985 4444444554444 2799977765
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=106.99 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=80.8
Q ss_pred HHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC
Q 012511 83 EVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 162 (462)
Q Consensus 83 eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~ 162 (462)
.|...++...+.+|||+|||+|..+..+.. ...+++++|+|+.|++.|+..... ..++.. ++. .++.
T Consensus 33 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~~D~s~~~l~~a~~~~~~---~~~~~~-----d~~-~~~~ 99 (251)
T PRK10258 33 ALLAMLPQRKFTHVLDAGCGPGWMSRYWRE----RGSQVTALDLSPPMLAQARQKDAA---DHYLAG-----DIE-SLPL 99 (251)
T ss_pred HHHHhcCccCCCeEEEeeCCCCHHHHHHHH----cCCeEEEEECCHHHHHHHHhhCCC---CCEEEc-----Ccc-cCcC
Confidence 344455544567999999999988777665 246899999999999999876532 122221 222 2344
Q ss_pred CCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 163 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 163 ~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
.+.+||+|+++.+++++++....+..+.++++ +||.|++..++.
T Consensus 100 ~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~~~~ 143 (251)
T PRK10258 100 ATATFDLAWSNLAVQWCGNLSTALRELYRVVR-PGGVVAFTTLVQ 143 (251)
T ss_pred CCCcEEEEEECchhhhcCCHHHHHHHHHHHcC-CCeEEEEEeCCC
Confidence 56789999999999999887776666666665 699999988764
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.1e-12 Score=105.26 Aligned_cols=99 Identities=24% Similarity=0.265 Sum_probs=55.1
Q ss_pred EEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEecccc
Q 012511 97 LDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 176 (462)
Q Consensus 97 LDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL 176 (462)
||+|||+|..+..+.+.++ ..+|+++|+|+.|++.|++.+............ ............++||+|+++++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~--~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP--DARYTGVDISPSMLERARERLAELGNDNFERLR--FDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC---EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE----SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEE--eecCChhhcccccccceehhhhhH
Confidence 8999999999988888764 579999999999998877766543321111100 000110001123599999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEE
Q 012511 177 GEVPSLQDRITIVRQLWDLTRDVL 200 (462)
Q Consensus 177 ~el~~~~~r~~~i~~Lw~~~gG~L 200 (462)
+++++....+..+.++++ |||.|
T Consensus 77 ~~l~~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 77 HHLEDIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp S--S-HHHHHHHHTTT-T-SS-EE
T ss_pred hhhhhHHHHHHHHHHHcC-CCCCC
Confidence 999766655555555554 68876
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.2e-10 Score=105.81 Aligned_cols=107 Identities=21% Similarity=0.345 Sum_probs=81.2
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+.+|||+|||+|..+..++...+ ..+++++|+|+.|++.++..+.. ++.++.. ++. ..+...++||+|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~--~~~~~~~-----d~~-~~~~~~~~fD~v 102 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFP--QAEFIALDISAGMLAQAKTKLSE--NVQFICG-----DAE-KLPLEDSSFDLI 102 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCC--CCcEEEEeChHHHHHHHHHhcCC--CCeEEec-----chh-hCCCCCCceeEE
Confidence 4568999999999998888887664 35699999999999999876642 2333322 222 123345689999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
+++++|+++.+....+..+.++++ +||.|++.+++..
T Consensus 103 i~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~~~~~ 139 (240)
T TIGR02072 103 VSNLALQWCDDLSQALSELARVLK-PGGLLAFSTFGPG 139 (240)
T ss_pred EEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEeCCcc
Confidence 999999999888777777777776 6999999887654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-10 Score=105.04 Aligned_cols=100 Identities=25% Similarity=0.323 Sum_probs=71.7
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+.+|||+|||+|..+..+.+ + ..+++++|+|+.|++. . ...... .. .. ......++||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~-~---~~~~~g~D~~~~~~~~-----~---~~~~~~--~~---~~-~~~~~~~~fD~i 82 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAK-R---GFEVTGVDISPQMIEK-----R---NVVFDN--FD---AQ-DPPFPDGSFDLI 82 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHH-T---TSEEEEEESSHHHHHH-----T---TSEEEE--EE---CH-THHCHSSSEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHH-h---CCEEEEEECCHHHHhh-----h---hhhhhh--hh---hh-hhhccccchhhH
Confidence 4568999999999998888866 3 2389999999999987 1 111110 00 00 112346799999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
+++++|+++++....+..+.++++ |||++++..+....
T Consensus 83 ~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 83 ICNDVLEHLPDPEEFLKELSRLLK-PGGYLVISDPNRDD 120 (161)
T ss_dssp EEESSGGGSSHHHHHHHHHHHCEE-EEEEEEEEEEBTTS
T ss_pred hhHHHHhhcccHHHHHHHHHHhcC-CCCEEEEEEcCCcc
Confidence 999999999976665555555554 69999999987644
|
... |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=105.54 Aligned_cols=133 Identities=18% Similarity=0.321 Sum_probs=91.8
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCC-CccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhh
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPR-SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 158 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~-~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~ 158 (462)
+|+.+..-++...-..||++|||||+.. .+++. ...+||++|+|+.|.+++.+.+.......+.. +-.. ...
T Consensus 64 lFs~i~~~~gk~~K~~vLEvgcGtG~Nf----kfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~--fvva-~ge 136 (252)
T KOG4300|consen 64 LFSGIYYFLGKSGKGDVLEVGCGTGANF----KFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVER--FVVA-DGE 136 (252)
T ss_pred HHhhhHHHhcccCccceEEecccCCCCc----ccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEE--EEee-chh
Confidence 4444443333222357899999999976 33331 46799999999999999988776543221110 0011 122
Q ss_pred ccC-CCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC-CCchHHHHHHHHHHH
Q 012511 159 DIS-KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT-PQGSSIISQMRSHIL 222 (462)
Q Consensus 159 ~l~-~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt-p~Gf~~I~~aR~~lL 222 (462)
+++ ..+.+||.||++++|-...++.+.+..++++++ |||.++++|++. +.|| +..+-|..+
T Consensus 137 ~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR-pgG~iifiEHva~~y~~--~n~i~q~v~ 199 (252)
T KOG4300|consen 137 NLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFIEHVAGEYGF--WNRILQQVA 199 (252)
T ss_pred cCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC-CCcEEEEEecccccchH--HHHHHHHHh
Confidence 344 357899999999999999999999999999997 799999999976 3343 555555544
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-09 Score=107.39 Aligned_cols=112 Identities=21% Similarity=0.360 Sum_probs=79.6
Q ss_pred HHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC
Q 012511 83 EVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 162 (462)
Q Consensus 83 eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~ 162 (462)
++...++...+.+|||+|||+|..+..++..++ ..++++||+|+.|++.|++.+.+ +.++.. ++.. +.
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~~v~gvD~s~~~i~~a~~~~~~---~~~~~~-----d~~~-~~- 89 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWP--AARITGIDSSPAMLAEARSRLPD---CQFVEA-----DIAS-WQ- 89 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHhCCC---CeEEEC-----chhc-cC-
Confidence 333444434568999999999999888887664 35899999999999999876533 222221 1211 11
Q ss_pred CCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 163 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 163 ~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
...+||+|+++++|+++++....+.-+.++++ +||.+++.-+++
T Consensus 90 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~~~~~~~~~ 133 (258)
T PRK01683 90 PPQALDLIFANASLQWLPDHLELFPRLVSLLA-PGGVLAVQMPDN 133 (258)
T ss_pred CCCCccEEEEccChhhCCCHHHHHHHHHHhcC-CCcEEEEECCCC
Confidence 23589999999999999877665566666665 699998865554
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=107.24 Aligned_cols=125 Identities=14% Similarity=0.204 Sum_probs=83.1
Q ss_pred CchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceec
Q 012511 70 MPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS 149 (462)
Q Consensus 70 ~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~ 149 (462)
.|+....+..++..+ +..++.+|||+|||+|..+..++..+ ..+|+++|+|+.|++.|+..+....++.++..
T Consensus 34 ~~gg~~~~~~~l~~l----~l~~~~~VLDiGcG~G~~a~~la~~~---~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~ 106 (263)
T PTZ00098 34 SSGGIEATTKILSDI----ELNENSKVLDIGSGLGGGCKYINEKY---GAHVHGVDICEKMVNIAKLRNSDKNKIEFEAN 106 (263)
T ss_pred CCCchHHHHHHHHhC----CCCCCCEEEEEcCCCChhhHHHHhhc---CCEEEEEECCHHHHHHHHHHcCcCCceEEEEC
Confidence 355555555555443 22345799999999998877766543 24899999999999999987654222322221
Q ss_pred chhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 150 YNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 150 ~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
++. ..+...++||+|++..+++|++ ..++..+++++.+. |||.|++.+....
T Consensus 107 -----D~~-~~~~~~~~FD~V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 107 -----DIL-KKDFPENTFDMIYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred -----Ccc-cCCCCCCCeEEEEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 121 2334567899999999998885 33444455544442 7999999987543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-10 Score=105.61 Aligned_cols=114 Identities=23% Similarity=0.369 Sum_probs=86.4
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l 160 (462)
..+|..++|...+.+|.|+|||||..+-.+.+.||. ..++|+|.|++|++.|+..+-+.. +.. .++.. .
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~---f~~-----aDl~~-w 87 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDAT---FEE-----ADLRT-W 87 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCc---eec-----ccHhh-c
Confidence 346666778778899999999999999999999984 689999999999999987765532 211 12322 1
Q ss_pred CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 161 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
.+....||++++-+|++|++-.+ ++.+|+.. |||+|.+-=|++-.
T Consensus 88 -~p~~~~dllfaNAvlqWlpdH~~---ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 88 -KPEQPTDLLFANAVLQWLPDHPE---LLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred -CCCCccchhhhhhhhhhccccHH---HHHHHHHhhCCCceEEEECCCccC
Confidence 24567899999999999997655 45555554 89999987776643
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-09 Score=102.76 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=81.7
Q ss_pred HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-CCCCceecchhHhhhhhccCCCCC
Q 012511 87 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-~~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.+....+.+|||+|||+|..+..++..++ ...+++++|.|+.+++.++...... .++.++.. +.. ..+....
T Consensus 14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~-----d~~-~~~~~~~ 86 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGPGNDARELARRVG-PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG-----DAD-GLPFPDG 86 (241)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec-----ccc-cCCCCCC
Confidence 33334568999999999999988888763 2468999999999999998863221 12222211 111 1233457
Q ss_pred cccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 166 EHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 166 ~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+||+|++.++++++++....+..+.++++ +||.|+++++.
T Consensus 87 ~~D~v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~ 126 (241)
T PRK08317 87 SFDAVRSDRVLQHLEDPARALAEIARVLR-PGGRVVVLDTD 126 (241)
T ss_pred CceEEEEechhhccCCHHHHHHHHHHHhc-CCcEEEEEecC
Confidence 89999999999999988877777777776 69999999974
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.2e-10 Score=103.47 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=80.5
Q ss_pred CCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcc
Q 012511 88 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
+|...-.++||+|||.|.++..++. ...+++++|.|+..++.|++.+.+..++.++.. ++... .+.++|
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~----rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~-----dvp~~--~P~~~F 107 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAP----RCDRLLAVDISPRALARARERLAGLPHVEWIQA-----DVPEF--WPEGRF 107 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGG----GEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES------TTT-----SS-E
T ss_pred cCccccceeEecCCCccHHHHHHHH----hhCceEEEeCCHHHHHHHHHhcCCCCCeEEEEC-----cCCCC--CCCCCe
Confidence 3433336999999999999998886 457999999999999999999987665544332 23221 356799
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec--------CCCCchHHH
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP--------GTPQGSSII 214 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp--------Gtp~Gf~~I 214 (462)
||||++-++.+|.+.++...++.++... |||.||+-.. |.+.|-+.|
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv 164 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETV 164 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHH
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHH
Confidence 9999999999998767777777877775 8999999753 456666665
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-09 Score=102.11 Aligned_cols=111 Identities=20% Similarity=0.306 Sum_probs=81.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
++.+|||+|||+|..+..+....+ ...+++++|.|+.|++.+++.+.... ++.++.. +.. ..+...+.||
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~~D 123 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVG-KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQG-----DAE-ALPFPDNSFD 123 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEec-----ccc-cCCCCCCCcc
Confidence 457999999999999888877665 24689999999999999998875421 1222211 111 1223456899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
+|+++++|+++.+....+..+..+++ +||.++++|...+..
T Consensus 124 ~I~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~~~~~~~~ 164 (239)
T PRK00216 124 AVTIAFGLRNVPDIDKALREMYRVLK-PGGRLVILEFSKPTN 164 (239)
T ss_pred EEEEecccccCCCHHHHHHHHHHhcc-CCcEEEEEEecCCCc
Confidence 99999999999887776666666665 699999999877644
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=109.39 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=72.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+|||+|||+|..+..++. ...+|+++|.|+.|++.+++++.... ++.... .++.. .. ..++||+|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~----~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~-----~D~~~-~~-~~~~fD~I 188 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLAL----LGFDVTAVDINQQSLENLQEIAEKENLNIRTGL-----YDINS-AS-IQEEYDFI 188 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHHcCCceEEEE-----echhc-cc-ccCCccEE
Confidence 457999999999998888776 24589999999999999988775422 111111 12221 11 25689999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
+++.+|+++. .+.+..+++++.+. +||++++++.
T Consensus 189 ~~~~vl~~l~-~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 189 LSTVVLMFLN-RERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred EEcchhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999995 55555666666553 7999888764
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=110.52 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=80.5
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
+.+|||+|||+|..+..+.+..+ ..+|+++|.|++|++.|++.... .++.++.. +.. .++...+.||+|++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~--~~~VtgVD~S~~mL~~A~~k~~~-~~i~~i~g-----D~e-~lp~~~~sFDvVIs 184 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPL-KECKIIEG-----DAE-DLPFPTDYADRYVS 184 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHhhhc-cCCeEEec-----cHH-hCCCCCCceeEEEE
Confidence 47999999999998887777654 25899999999999999886532 23333322 222 23445678999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
+++|+++++....++.+.++++ +||.|+++++..+.
T Consensus 185 ~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~~~~p~ 220 (340)
T PLN02490 185 AGSIEYWPDPQRGIKEAYRVLK-IGGKACLIGPVHPT 220 (340)
T ss_pred cChhhhCCCHHHHHHHHHHhcC-CCcEEEEEEecCcc
Confidence 9999999988776666777765 69999999876554
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-09 Score=106.72 Aligned_cols=102 Identities=21% Similarity=0.129 Sum_probs=69.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+.+|||+|||+|..+..+... ..+|+++|+|+.|++.|++++.... ....+. ....++ +...++|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~----g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~--f~~~Dl----~~l~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE----GAIVSASDISAAMVAEAERRAKEALAALPPEVLPK--FEANDL----ESLSGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhcccccccccceE--EEEcch----hhcCCCc
Confidence 4679999999999988887762 3589999999999999998875421 000110 000112 1224689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|+|++..+|+|+++ +....+++.+.+..+|.++|.-
T Consensus 214 D~Vv~~~vL~H~p~-~~~~~ll~~l~~l~~g~liIs~ 249 (315)
T PLN02585 214 DTVTCLDVLIHYPQ-DKADGMIAHLASLAEKRLIISF 249 (315)
T ss_pred CEEEEcCEEEecCH-HHHHHHHHHHHhhcCCEEEEEe
Confidence 99999999999874 3444566766665555555543
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.6e-10 Score=93.45 Aligned_cols=93 Identities=23% Similarity=0.334 Sum_probs=64.3
Q ss_pred EEEECCchhHHHHHHHHhCCCC-ccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEEEec
Q 012511 96 VLDFGAGTGSAFWALREVWPRS-LEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVIAS 173 (462)
Q Consensus 96 VLDvG~G~G~~~~al~~~~~~~-~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVias 173 (462)
|||+|||+|..+.++.+.++.. ..++++||+|++|++.+++.....+ ...++.. ++. .++...++||+|+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~-----D~~-~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQA-----DAR-DLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEES-----CTT-CHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEEC-----CHh-HCcccCCCeeEEEEc
Confidence 7999999999999999887321 2799999999999999999875422 2222222 222 133346699999996
Q ss_pred cc-ccCCCCHHHHHHHHHHHHhc
Q 012511 174 YV-LGEVPSLQDRITIVRQLWDL 195 (462)
Q Consensus 174 ~v-L~el~~~~~r~~~i~~Lw~~ 195 (462)
+. ++++. +++...+++++.+.
T Consensus 75 ~~~~~~~~-~~~~~~ll~~~~~~ 96 (101)
T PF13649_consen 75 GLSLHHLS-PEELEALLRRIARL 96 (101)
T ss_dssp TTGGGGSS-HHHHHHHHHHHHHT
T ss_pred CCccCCCC-HHHHHHHHHHHHHH
Confidence 55 99985 88888888888775
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.1e-10 Score=106.61 Aligned_cols=100 Identities=20% Similarity=0.205 Sum_probs=71.4
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC----CCceecchhHhhhhhccCCCCCcccE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD----LPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~----~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++|||+|||+|..+..++. ....|+|||.|+.|++.|++.....+- +.+.-. ..........++||.
T Consensus 91 ~~ilDvGCGgGLLSepLAr----lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~-----~~~~~~E~~~~~fDa 161 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLAR----LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLE-----YEDTDVEGLTGKFDA 161 (282)
T ss_pred ceEEEeccCccccchhhHh----hCCeeEeecccHHHHHHHHHhhhcCchhccccceeee-----hhhcchhhcccccce
Confidence 6799999999999988886 357999999999999999987332111 111100 111122233456999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
|||+-+|.|+.++.+.+.-+-++++ |+|.|+|-
T Consensus 162 VvcsevleHV~dp~~~l~~l~~~lk-P~G~lfit 194 (282)
T KOG1270|consen 162 VVCSEVLEHVKDPQEFLNCLSALLK-PNGRLFIT 194 (282)
T ss_pred eeeHHHHHHHhCHHHHHHHHHHHhC-CCCceEee
Confidence 9999999999988876555555554 79999984
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-09 Score=99.14 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=80.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|..+..+....+. ..+++++|+|+.+++.++..+....++.++.. ++.. .+...++||+|+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~-----d~~~-~~~~~~~~D~i~ 111 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQA-----DAEA-LPFEDNSFDAVT 111 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEec-----chhc-CCCCCCcEEEEE
Confidence 5689999999999988888776652 35899999999999999887652122222221 2221 223456899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
++++++++++....++.+..+++ +||.+++++...+..
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~~~ 149 (223)
T TIGR01934 112 IAFGLRNVTDIQKALREMYRVLK-PGGRLVILEFSKPAN 149 (223)
T ss_pred EeeeeCCcccHHHHHHHHHHHcC-CCcEEEEEEecCCCc
Confidence 99999999877666666666664 799999999866544
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=107.01 Aligned_cols=131 Identities=16% Similarity=0.108 Sum_probs=78.3
Q ss_pred chhHHHHHH-HHHHHHHHCCCCCCCeEEEECCchhH----HHHHHHHhCCC---CccEEEEEeCCHHHHHHHHHhhcCC-
Q 012511 71 PAVYSACYR-VLCEVRRRLPGFSPAKVLDFGAGTGS----AFWALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQGP- 141 (462)
Q Consensus 71 p~~Ya~~~~-vL~eL~~rlp~~~p~rVLDvG~G~G~----~~~al~~~~~~---~~~~v~~VD~S~~ml~~Ak~ll~~~- 141 (462)
|..+..+.. ++.++..+.+...+.+|||+|||+|. .+..+.+.++. ...+|+|+|+|+.|++.|++..-..
T Consensus 77 ~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~ 156 (264)
T smart00138 77 SKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPER 156 (264)
T ss_pred cHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHH
Confidence 344444433 44555444333346899999999995 33345554432 1358999999999999998753110
Q ss_pred --CCCCc---------------e----e--cchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--C
Q 012511 142 --KDLPL---------------I----H--SYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--T 196 (462)
Q Consensus 142 --~~~~~---------------i----~--~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~ 196 (462)
.++|. + . ..+...++.. .+...++||+|+|.++|++++ ...+..+++++.+. +
T Consensus 157 ~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~-~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~p 234 (264)
T smart00138 157 ELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA-ESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKP 234 (264)
T ss_pred HHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC-CCCccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCC
Confidence 01110 0 0 0000112221 122367899999999999996 55555566555553 7
Q ss_pred CCEEEEE
Q 012511 197 RDVLVLV 203 (462)
Q Consensus 197 gG~LVlV 203 (462)
||+|+|-
T Consensus 235 GG~L~lg 241 (264)
T smart00138 235 GGYLFLG 241 (264)
T ss_pred CeEEEEE
Confidence 9999984
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-09 Score=106.75 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=74.9
Q ss_pred HHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh---hcCCCCCCceecchhHhhhhhccC
Q 012511 85 RRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL---MQGPKDLPLIHSYNSIQALNKDIS 161 (462)
Q Consensus 85 ~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l---l~~~~~~~~i~~~~~~~~l~~~l~ 161 (462)
...+....+.+|||+|||+|..++.+.... ...|+|||+|+.|+..++.. +.......+... ++. .++
T Consensus 114 l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g---~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~-----~ie-~lp 184 (314)
T TIGR00452 114 LPHLSPLKGRTILDVGCGSGYHMWRMLGHG---AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL-----GIE-QLH 184 (314)
T ss_pred HHhcCCCCCCEEEEeccCCcHHHHHHHHcC---CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC-----CHH-HCC
Confidence 333444567899999999999888877642 24799999999998765432 222112222211 121 133
Q ss_pred CCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 162 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
. ...||+|++..+|+|++++...+..+.++++ +||.|||-.
T Consensus 185 ~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvlet 225 (314)
T TIGR00452 185 E-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLET 225 (314)
T ss_pred C-CCCcCEEEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEE
Confidence 2 3479999999999999988887777777776 699999854
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-09 Score=107.00 Aligned_cols=106 Identities=21% Similarity=0.238 Sum_probs=74.6
Q ss_pred HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC---CCCCCceecchhHhhhhhccCCC
Q 012511 87 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG---PKDLPLIHSYNSIQALNKDISKS 163 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~---~~~~~~i~~~~~~~~l~~~l~~~ 163 (462)
.++...+.+|||+|||+|..++.++...+ ..|+++|+|+.|+..++..... ..++.++.. ++. .++.
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~---~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~-----d~e-~lp~- 186 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGA---KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPL-----GIE-QLPA- 186 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCC---CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeC-----CHH-HCCC-
Confidence 33445668999999999999998887533 3699999999998765443221 122322221 122 2343
Q ss_pred CCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 164 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 164 ~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
.++||+|++..+|+|+.++...+..+.+.++ +||.||+-
T Consensus 187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~ 225 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLE 225 (322)
T ss_pred cCCcCEEEECChhhccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence 5789999999999999888776676777765 69999874
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=9e-09 Score=98.62 Aligned_cols=101 Identities=21% Similarity=0.221 Sum_probs=69.5
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.++.+|||+|||+|..+..+++. ...|+++|+|+.|++.|++.+..... +.+.. .+ ++...++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~----~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~-----~d----~~~~~~~f 128 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR----GAKVVASDISPQMVEEARERAPEAGLAGNITFEV-----GD----LESLLGRF 128 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEE-----cC----chhccCCc
Confidence 34579999999999988877763 34699999999999999988754321 22211 11 22234689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcC-CCEEEEEec
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLT-RDVLVLVEP 205 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~-gG~LVlVEp 205 (462)
|+|++.++|++++ ......+++.+.+.. +|.++...+
T Consensus 129 D~v~~~~~l~~~~-~~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 129 DTVVCLDVLIHYP-QEDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred CEEEEcchhhcCC-HHHHHHHHHHHHhhcCCeEEEEECC
Confidence 9999999999986 444556666666553 444444443
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=100.41 Aligned_cols=128 Identities=15% Similarity=0.242 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHH-HHHCCCCCCCeEEEECCchhHHHHHHHHhCCCC-ccEEEEEeCCHHHHHHHHHhhcCCCCCCceec
Q 012511 72 AVYSACYRVLCEV-RRRLPGFSPAKVLDFGAGTGSAFWALREVWPRS-LEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS 149 (462)
Q Consensus 72 ~~Ya~~~~vL~eL-~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~-~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~ 149 (462)
+.|..+...+.++ ...++ ..+.+|||+|||+|..+..+.+..+.. ...++++|+|+.|++.|++... ++.++..
T Consensus 65 g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~---~~~~~~~ 140 (272)
T PRK11088 65 GHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP---QVTFCVA 140 (272)
T ss_pred CChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC---CCeEEEe
Confidence 4566665555333 33333 245789999999999888887766532 2379999999999999986542 2322221
Q ss_pred chhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 150 YNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 150 ~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
+.. .++..+++||+|++.++... ...+.++++ +||.|+++.|+.. .+.++|+.+
T Consensus 141 -----d~~-~lp~~~~sfD~I~~~~~~~~-------~~e~~rvLk-pgG~li~~~p~~~----~l~el~~~~ 194 (272)
T PRK11088 141 -----SSH-RLPFADQSLDAIIRIYAPCK-------AEELARVVK-PGGIVITVTPGPR----HLFELKGLI 194 (272)
T ss_pred -----ecc-cCCCcCCceeEEEEecCCCC-------HHHHHhhcc-CCCEEEEEeCCCc----chHHHHHHh
Confidence 121 24556679999998765221 234555665 7999999998753 344556654
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-08 Score=101.84 Aligned_cols=122 Identities=14% Similarity=0.188 Sum_probs=80.6
Q ss_pred chhHHHHHHHHHHHHHHCCCCCCCeEEEECCchh--HHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CC
Q 012511 71 PAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTG--SAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DL 144 (462)
Q Consensus 71 p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G--~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~ 144 (462)
-.+|-.+.+.=-++...+..-.|.+|||+|||+| +.++.++..+++ .+++++|.+++|++.|++.++... .+
T Consensus 102 ~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~--~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV 179 (296)
T PLN03075 102 YNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPT--TSFHNFDIDPSANDVARRLVSSDPDLSKRM 179 (296)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHhhhccCccCCc
Confidence 3677766654434333333337899999999999 777777777763 589999999999999999985311 12
Q ss_pred CceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 145 PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 145 ~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
.+.. .++.. .....+.||+|++. +|+++. .+...++++++.+. +||.|++
T Consensus 180 ~F~~-----~Da~~-~~~~l~~FDlVF~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 180 FFHT-----ADVMD-VTESLKEYDVVFLA-ALVGMD-KEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred EEEE-----Cchhh-cccccCCcCEEEEe-cccccc-cccHHHHHHHHHHhcCCCcEEEE
Confidence 2222 12222 11124689999999 999883 23334455555543 7999987
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.1e-09 Score=98.00 Aligned_cols=112 Identities=23% Similarity=0.264 Sum_probs=76.6
Q ss_pred HHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC
Q 012511 83 EVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 162 (462)
Q Consensus 83 eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~ 162 (462)
++...++..++.++||+|||.|..+..++. ...+|+++|.|+..++.++.+++.. +++ +.. ...++.. ..
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~----~G~~VtAvD~s~~al~~l~~~a~~~-~l~-i~~--~~~Dl~~-~~- 90 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLAS----QGFDVTAVDISPVALEKLQRLAEEE-GLD-IRT--RVADLND-FD- 90 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHH----TT-EEEEEESSHHHHHHHHHHHHHT-T-T-EEE--EE-BGCC-BS-
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHhhc-Cce-eEE--EEecchh-cc-
Confidence 334444556789999999999998888887 4678999999999999888877542 233 211 1123332 11
Q ss_pred CCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 163 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 163 ~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
....||+|+++.++++|. .+.+..++.+|-+. +||+++++..
T Consensus 91 ~~~~yD~I~st~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 91 FPEEYDFIVSTVVFMFLQ-RELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -TTTEEEEEEESSGGGS--GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCcCEEEEEEEeccCC-HHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 236899999999999996 66677777777654 7999888653
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.6e-09 Score=102.63 Aligned_cols=107 Identities=13% Similarity=0.174 Sum_probs=76.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..++...+ ...+++++|+|+.|++.|++...... ++.++. .++. .++...+.||+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g-~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~-----~d~~-~l~~~~~~fD~ 149 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVG-PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRL-----GEIE-ALPVADNSVDV 149 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEE-----cchh-hCCCCCCceeE
Confidence 357999999999987766665544 23589999999999999998765432 222221 1222 23444568999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
|+++.+++++++....+..+.++++ +||.|++.+..
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~~ 185 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLK-PGGRFAISDVV 185 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEee
Confidence 9999999999877666666666665 79999998753
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.2e-09 Score=110.03 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=78.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+|||+|||+|..+..++..++ .+++++|+|+.|++.|+....... .+.+.. .++. ..+.+.++||+|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~-----~d~~-~~~~~~~~fD~I 336 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFD---VHVVGIDLSVNMISFALERAIGRKCSVEFEV-----ADCT-KKTYPDNSFDVI 336 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhhcCCCceEEEE-----cCcc-cCCCCCCCEEEE
Confidence 457999999999988877776543 489999999999999987664322 122221 1222 123345689999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
++..++.|++++...+..+.++++ |||.|+|.+...
T Consensus 337 ~s~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~ 372 (475)
T PLN02336 337 YSRDTILHIQDKPALFRSFFKWLK-PGGKVLISDYCR 372 (475)
T ss_pred EECCcccccCCHHHHHHHHHHHcC-CCeEEEEEEecc
Confidence 999999999988776777777775 799999988654
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.3e-09 Score=100.81 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhh
Q 012511 59 DDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 138 (462)
Q Consensus 59 ~~e~~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll 138 (462)
+.++..|+.+| +.|- ...+..+..+... ...++|+|||+|-++..+++.+ ++|+++|.|++|+++|++..
T Consensus 6 ~~~a~~Y~~AR--P~YP--tdw~~~ia~~~~~--h~~a~DvG~G~Gqa~~~iae~~----k~VIatD~s~~mL~~a~k~~ 75 (261)
T KOG3010|consen 6 DKQAADYLNAR--PSYP--TDWFKKIASRTEG--HRLAWDVGTGNGQAARGIAEHY----KEVIATDVSEAMLKVAKKHP 75 (261)
T ss_pred cccHHHHhhcC--CCCc--HHHHHHHHhhCCC--cceEEEeccCCCcchHHHHHhh----hhheeecCCHHHHHHhhcCC
Confidence 44677888877 4554 4567777776543 2489999999998888888864 57999999999999998755
Q ss_pred cCCC-CCCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 139 QGPK-DLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 139 ~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
.... +.|..-.. .++ ..+...+++.|||+|+-++|++. .+.....+.++++++||.+.+
T Consensus 76 ~~~y~~t~~~ms~---~~~-v~L~g~e~SVDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 76 PVTYCHTPSTMSS---DEM-VDLLGGEESVDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred CcccccCCccccc---ccc-ccccCCCcceeeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEEEE
Confidence 4321 11110000 001 11223478999999999999995 777788899999988877665
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.5e-09 Score=99.46 Aligned_cols=103 Identities=21% Similarity=0.228 Sum_probs=76.0
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
++|||+|||+|..+..+++.++ ..+++++|+|+.|++.++..+...+ .+.++. .++.. .+. .++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~-----~d~~~-~~~-~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP--HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFY-----RDSAK-DPF-PDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEe-----ccccc-CCC-CCCCCEe
Confidence 3799999999998888877664 2589999999999999998875432 112221 12211 122 3589999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
++..+++++++....+..+.++++ |||.+++.+..
T Consensus 72 ~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~ 106 (224)
T smart00828 72 FGFEVIHHIKDKMDLFSNISRHLK-DGGHLVLADFI 106 (224)
T ss_pred ehHHHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEcc
Confidence 999999999877666666777765 79999998864
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.2e-09 Score=96.31 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=70.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
+.+|||+|||+|..+.+++..++ ..+|+++|.|+.|++.|++.++... ++.++.. +... ++. .++||+|
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~--~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~-----d~~~-~~~-~~~fDlV 116 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARP--ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG-----RAEE-FGQ-EEKFDVV 116 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCC--CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec-----cHhh-CCC-CCCccEE
Confidence 58999999999998888777665 4689999999999999998876543 2222221 1221 233 5689999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
++.. +.+.......+.++++ +||.+++++..
T Consensus 117 ~~~~----~~~~~~~l~~~~~~Lk-pGG~lv~~~~~ 147 (187)
T PRK00107 117 TSRA----VASLSDLVELCLPLLK-PGGRFLALKGR 147 (187)
T ss_pred EEcc----ccCHHHHHHHHHHhcC-CCeEEEEEeCC
Confidence 9875 2334454555555554 79999999754
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-08 Score=96.20 Aligned_cols=91 Identities=26% Similarity=0.291 Sum_probs=64.6
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.++.+|||+|||+|..+..++.. ..+++++|+|++|++.|++.+.... ++.+... ++.. + .++|
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~----~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~-----d~~~-~---~~~f 120 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR----GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVN-----DLLS-L---CGEF 120 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-----Chhh-C---CCCc
Confidence 45689999999999988877762 3589999999999999998775422 2222211 1211 1 2689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL 195 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~ 195 (462)
|+|++++++.+++ ......++.++.+.
T Consensus 121 D~ii~~~~l~~~~-~~~~~~~l~~i~~~ 147 (219)
T TIGR02021 121 DIVVCMDVLIHYP-ASDMAKALGHLASL 147 (219)
T ss_pred CEEEEhhHHHhCC-HHHHHHHHHHHHHH
Confidence 9999999999986 44455566666554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=109.22 Aligned_cols=106 Identities=16% Similarity=0.266 Sum_probs=73.6
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhh-hccCCCCCcccE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN-KDISKSEREHDL 169 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~-~~l~~~~~~fDL 169 (462)
....+|||+|||+|..+..+++. ..++++||.|+.|++.++.......++.++.. ++. ..++....+||+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~----~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~-----d~~~~~~~~~~~~fD~ 106 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKK----AGQVIALDFIESVIKKNESINGHYKNVKFMCA-----DVTSPDLNISDGSVDL 106 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHhccCCceEEEEe-----cccccccCCCCCCEEE
Confidence 34579999999999999888874 34899999999999988764433233333322 121 123345578999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
|+++++|+++++ .+...+++++.+. +||.|++.|..
T Consensus 107 I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 107 IFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred EehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999999999974 3444444444432 79999998854
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-08 Score=92.35 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=67.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+..++...+ ..+|++||.|+.|++.+++.++... ++.++.. +... +. ..++||+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~--~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~-----d~~~-~~-~~~~fD~ 112 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP--ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG-----RAED-FQ-HEEQFDV 112 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC--CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec-----chhh-cc-ccCCccE
Confidence 468999999999988777766554 3579999999999999988765432 2333322 1221 22 2468999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|++.. +++ .....+.+.++++ +||.+++..
T Consensus 113 I~s~~-~~~---~~~~~~~~~~~Lk-pgG~lvi~~ 142 (181)
T TIGR00138 113 ITSRA-LAS---LNVLLELTLNLLK-VGGYFLAYK 142 (181)
T ss_pred EEehh-hhC---HHHHHHHHHHhcC-CCCEEEEEc
Confidence 98865 433 3344455566665 799998774
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.9e-08 Score=94.03 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=76.3
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCccc
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
..+..+|||+|||+|..+..+... ..+++++|+|+.+++.++..+.... .+.++.. +.........++||
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~fD 116 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL----GADVTGIDASEENIEVARLHALESGLKIDYRQT-----TAEELAAEHPGQFD 116 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc----CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEec-----CHHHhhhhcCCCcc
Confidence 345689999999999988777652 3579999999999999987664322 1112111 11111112346899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+|+++++++++++....+..+.++++ +||.+++..++
T Consensus 117 ~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~~~ 153 (233)
T PRK05134 117 VVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFSTLN 153 (233)
T ss_pred EEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEecC
Confidence 99999999999988777777777775 69999987764
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-08 Score=96.74 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=83.8
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCC----CccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCC
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPR----SLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~----~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
....+|||++||||..+..+.+..+. ...+|+++|+|++|++.|++.....+ ..+.+ .++..-...+|+++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~---~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRV---EWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCce---EEEeCCcccCCCCC
Confidence 34589999999999988877766442 24799999999999999998875422 11111 11111233577888
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
.+||+.++++.+...++.+..+...-++++ |||.+.++|...
T Consensus 176 ~s~D~yTiafGIRN~th~~k~l~EAYRVLK-pGGrf~cLeFsk 217 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTHIQKALREAYRVLK-PGGRFSCLEFSK 217 (296)
T ss_pred CcceeEEEecceecCCCHHHHHHHHHHhcC-CCcEEEEEEccc
Confidence 999999999999999988876666666665 799999999754
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.9e-08 Score=89.86 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=70.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
++.+|||+|||+|..+..++... .+++++|.|+.|++.++..+.... +..++.. ++.. ...++||+|
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----d~~~---~~~~~fD~V 86 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG----KCILTTDINPFAVKELRENAKLNNVGLDVVMT-----DLFK---GVRGKFDVI 86 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC----CEEEEEECCHHHHHHHHHHHHHcCCceEEEEc-----cccc---ccCCcccEE
Confidence 45789999999999988888642 289999999999999998775432 1111111 1111 123589999
Q ss_pred EecccccCCCCHH---------------------HHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 171 IASYVLGEVPSLQ---------------------DRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 171 ias~vL~el~~~~---------------------~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
+++..+++.+... ..+..+.++++ +||.++++.++...
T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~~~~~~~~ 145 (179)
T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQLIQSSLNG 145 (179)
T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEEEEeccCC
Confidence 9998877665321 11223334443 79999999976653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.3e-08 Score=84.06 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=66.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
...+|||+|||+|..++.++..++. .+|+++|.|+.|++.++..++... +..++.. +....++....+||+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~D~ 91 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEG-----DAPEALEDSLPEPDR 91 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEec-----cccccChhhcCCCCE
Confidence 3469999999999999998887763 689999999999999988775432 2211111 111111222358999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|++......+ .+.+..+.++++ +||.|++
T Consensus 92 v~~~~~~~~~---~~~l~~~~~~Lk-~gG~li~ 120 (124)
T TIGR02469 92 VFIGGSGGLL---QEILEAIWRRLR-PGGRIVL 120 (124)
T ss_pred EEECCcchhH---HHHHHHHHHHcC-CCCEEEE
Confidence 9997654332 233444444444 6999887
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.6e-08 Score=92.32 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=75.6
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.++.+|||+|||+|..+..+... ..+++++|.|+.|++.++..+.... ++.+... +..........+||
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~D 114 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL----GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCT-----SVEDLAEKGAKSFD 114 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeC-----CHHHhhcCCCCCcc
Confidence 35689999999999988777653 3469999999999999988765422 1222211 11111111236899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+|+++++++++.+....+..+.++++ +||.+++....
T Consensus 115 ~i~~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~~~ 151 (224)
T TIGR01983 115 VVTCMEVLEHVPDPQAFIRACAQLLK-PGGILFFSTIN 151 (224)
T ss_pred EEEehhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEecC
Confidence 99999999999988877777777765 69998887654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.6e-08 Score=106.61 Aligned_cols=107 Identities=14% Similarity=0.148 Sum_probs=74.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccC--CCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDIS--KSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~--~~~~~fD 168 (462)
++.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.|+..+.... +..++.. +.. .++ ..+++||
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~g-----Da~-dLp~~fedeSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKG-----DAI-NLSSSFEKESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEc-----chH-hCccccCCCCEE
Confidence 458999999999998888877665 4699999999999999987654321 1112221 111 122 3456899
Q ss_pred EEEecccccCCCC----------HHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 169 LVIASYVLGEVPS----------LQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~----------~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
+|++++++|++.+ ......+++++.+. +||.++|+|.-
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 9999999987631 23444555555543 79999999863
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.5e-08 Score=99.92 Aligned_cols=115 Identities=21% Similarity=0.219 Sum_probs=78.8
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
.+..+.+.++...+.+|||+|||+|..+..+++..+ .+|+++|+|++|++.|++.+.+.. +.+.. .+.. .
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g---~~V~giDlS~~~l~~A~~~~~~l~-v~~~~-----~D~~-~ 224 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG---VSVVGVTISAEQQKLAQERCAGLP-VEIRL-----QDYR-D 224 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhccCe-EEEEE-----Cchh-h
Confidence 444455555444557999999999998887776543 489999999999999998875421 11111 1121 1
Q ss_pred cCCCCCcccEEEecccccCCCCH--HHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 160 ISKSEREHDLVIASYVLGEVPSL--QDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~--~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
+ .++||+|++..+++++... ...+..+.++++ |||.+++...+.+
T Consensus 225 l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lk-pGG~lvl~~i~~~ 271 (383)
T PRK11705 225 L---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLK-PDGLFLLHTIGSN 271 (383)
T ss_pred c---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcC-CCcEEEEEEccCC
Confidence 1 3689999999999998532 334455556664 7999999876544
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-08 Score=91.67 Aligned_cols=121 Identities=9% Similarity=0.038 Sum_probs=76.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
...+|||+|||+|..+..++..++ ..+|++||+|+.|++.|++.+.... ++.++.... ...+... ....+||+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p--~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~-~~~l~~~--~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP--DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDA-VEVLLDM--FPDGSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC--CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCH-HHHHHHH--cCccccce
Confidence 457999999999999998887765 3579999999999999998775432 222332211 0112111 23568999
Q ss_pred EEecccccCCCC--------HHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 170 VIASYVLGEVPS--------LQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 170 Vias~vL~el~~--------~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
|++.+...+... ....+..+.++++ +||.|+|+.+ ....+..+.+.+.
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~----~~~~~~~~~~~~~ 170 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFATD----WEGYAEYMLEVLS 170 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEcC----CHHHHHHHHHHHH
Confidence 998876533221 1223344444444 7999999654 3455555555543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.6e-08 Score=93.50 Aligned_cols=113 Identities=17% Similarity=0.027 Sum_probs=71.5
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--------------CCCC
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--------------KDLP 145 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--------------~~~~ 145 (462)
.|.++..+++...+.+|||+|||.|..+..+++ ...+|++||+|+.+++.+.....-. .++.
T Consensus 22 ~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~----~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 22 LLVKHWPALGLPAGARVFVPLCGKSLDLAWLAE----QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred HHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHh----CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 343443343222346999999999988877776 4668999999999999753311100 0111
Q ss_pred ceecchhHhhhhhccCC-CCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEE
Q 012511 146 LIHSYNSIQALNKDISK-SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 203 (462)
Q Consensus 146 ~i~~~~~~~~l~~~l~~-~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlV 203 (462)
++ ..++.. ++. ..++||+|+...++++++ ++.|..++.++.+. |||.++++
T Consensus 98 ~~-----~~D~~~-~~~~~~~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 98 IF-----CGDFFA-LTAADLGPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred EE-----EccCCC-CCcccCCCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEE
Confidence 11 112211 111 135799999999999996 77777666666554 79986665
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=95.43 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=72.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
+..+|||+|||+|..+.++.+.+|. .+++++|. +.|++.+++.+...+-...+... ..++.. .+ ...+|+|+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~--~~d~~~-~~--~~~~D~v~ 220 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPE--LDSTILNL-PGAIDLVNENAAEKGVADRMRGI--AVDIYK-ES--YPEADAVL 220 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCC--CEEEEEec-HHHHHHHHHHHHhCCccceEEEE--ecCccC-CC--CCCCCEEE
Confidence 3479999999999999998888873 58999997 78999998876643211111110 011111 11 12479999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
++++||... .+....+++++.+. |||.|+|+|.
T Consensus 221 ~~~~lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 221 FCRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred eEhhhhcCC-hHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999999885 45545566666553 7999999986
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.7e-08 Score=89.95 Aligned_cols=103 Identities=20% Similarity=0.279 Sum_probs=68.5
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l 160 (462)
|.++...++ .+.+|||+|||+|..+.++.+.. ...++++|+|++|++.++.. ++.++... +...+
T Consensus 4 ~~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~---~~~~~giD~s~~~i~~a~~~-----~~~~~~~d-----~~~~l 68 (194)
T TIGR02081 4 LESILNLIP--PGSRVLDLGCGDGELLALLRDEK---QVRGYGIEIDQDGVLACVAR-----GVNVIQGD-----LDEGL 68 (194)
T ss_pred HHHHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc---CCcEEEEeCCHHHHHHHHHc-----CCeEEEEE-----hhhcc
Confidence 344554443 34699999999999887776532 24679999999999988641 22233221 22112
Q ss_pred -CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 161 -SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 161 -~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
+...++||+|+++++|+++++... +++++.+. ++.+++
T Consensus 69 ~~~~~~sfD~Vi~~~~l~~~~d~~~---~l~e~~r~-~~~~ii 107 (194)
T TIGR02081 69 EAFPDKSFDYVILSQTLQATRNPEE---ILDEMLRV-GRHAIV 107 (194)
T ss_pred cccCCCCcCEEEEhhHhHcCcCHHH---HHHHHHHh-CCeEEE
Confidence 234578999999999999987554 56666664 555544
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.3e-08 Score=91.06 Aligned_cols=99 Identities=20% Similarity=0.250 Sum_probs=68.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
...+|||+|||+|..+..+++..+ ...+|+++|.+++|++.|++.+..... +.++.. +....++ ...+||
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~-~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~-----d~~~~~~-~~~~fD 144 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIE-RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG-----DGKRGLE-KHAPFD 144 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC-----CcccCCc-cCCCcc
Confidence 347999999999998877777654 235899999999999999987764321 222221 2222222 346899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+|+++.++.+++. ++++ .++ +||.|++.-
T Consensus 145 ~Ii~~~~~~~~~~-----~l~~-~L~-~gG~lvi~~ 173 (205)
T PRK13944 145 AIIVTAAASTIPS-----ALVR-QLK-DGGVLVIPV 173 (205)
T ss_pred EEEEccCcchhhH-----HHHH-hcC-cCcEEEEEE
Confidence 9999999888862 2333 343 799998854
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-07 Score=92.36 Aligned_cols=121 Identities=17% Similarity=0.091 Sum_probs=83.6
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
.++.+.+.+...++++|||||||-|..+..+++.++ .+|++|+.|+++.+.+++.++..+-...++.. .+++.
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~---v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~--l~d~r-- 132 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG---VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR--LQDYR-- 132 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC---CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE--ecccc--
Confidence 445555555555678999999999988887777653 58999999999999999977654321111110 12222
Q ss_pred cCCCCCcccEEEecccccCCCC--HHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 160 ISKSEREHDLVIASYVLGEVPS--LQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~--~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
...++||-||+--++.|+.. ...-...+.++++ +||.+++-.-+.+..
T Consensus 133 --d~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~llh~I~~~~~ 182 (283)
T COG2230 133 --DFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLLHSITGPDQ 182 (283)
T ss_pred --ccccccceeeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEEEEecCCCc
Confidence 23345999999999999974 3344455566654 699999988777663
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-07 Score=86.02 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=72.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC--CCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~--~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
...+|||+|||+|..+..++...+ ..+++++|.|+.+++.++..++...- +..+. .++...+ ...+||+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~--~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~-----~d~~~~~--~~~~fD~ 101 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP--DAKVTAVDINPDALELAKRNAERNGLENVEVVQ-----SDLFEAL--PDGKFDL 101 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST--CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEE-----SSTTTTC--CTTCEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCC--CCEEEEEcCCHHHHHHHHHHHHhcCcccccccc-----ccccccc--cccceeE
Confidence 347999999999999999888765 34699999999999999988765331 11221 1222222 3579999
Q ss_pred EEecccccCCCC-H-HHHHHHHHHHHhc--CCCEEEEEecCCCCchHHH
Q 012511 170 VIASYVLGEVPS-L-QDRITIVRQLWDL--TRDVLVLVEPGTPQGSSII 214 (462)
Q Consensus 170 Vias~vL~el~~-~-~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I 214 (462)
|+++--++.-.. . .-...++.+..+. +||.|++|-. +..+++.+
T Consensus 102 Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~-~~~~~~~~ 149 (170)
T PF05175_consen 102 IVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN-SHLGYERL 149 (170)
T ss_dssp EEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE-TTSCHHHH
T ss_pred EEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee-cCCChHHH
Confidence 999876655532 1 1223344443332 7999987765 45566555
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.9e-07 Score=85.84 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=67.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..++...+ ..+++++|.|+.|++.|++.+.... ++.++.. +... + ...+||+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~-----d~~~--~-~~~~~D~ 100 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFP--SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG-----EAPI--E-LPGKADA 100 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec-----Cchh--h-cCcCCCE
Confidence 457999999999999988887664 3689999999999999988765432 2222211 1111 1 2357999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|+++.....+ ......+.++++ +||.+++...
T Consensus 101 v~~~~~~~~~---~~~l~~~~~~Lk-~gG~lv~~~~ 132 (187)
T PRK08287 101 IFIGGSGGNL---TAIIDWSLAHLH-PGGRLVLTFI 132 (187)
T ss_pred EEECCCccCH---HHHHHHHHHhcC-CCeEEEEEEe
Confidence 9998765443 233334444444 7999988654
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-07 Score=88.54 Aligned_cols=99 Identities=14% Similarity=0.206 Sum_probs=68.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+..++...+ ...+|+++|.+++|++.|++.++... ++.++.. +..... ....+||+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~-~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g-----d~~~~~-~~~~~fD~ 148 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVG-KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG-----DGTLGY-EENAPYDR 148 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC-----CcccCC-CcCCCcCE
Confidence 457999999999998877777654 24689999999999999999886532 2222221 111111 23468999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|+++..+.+++. .+.+ .++ +||.||+..
T Consensus 149 I~~~~~~~~~~~-----~l~~-~Lk-pgG~lvi~~ 176 (212)
T PRK13942 149 IYVTAAGPDIPK-----PLIE-QLK-DGGIMVIPV 176 (212)
T ss_pred EEECCCcccchH-----HHHH-hhC-CCcEEEEEE
Confidence 999988777641 2333 343 799998865
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-07 Score=92.87 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=65.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|..+.+++. .+ ..+++++|.|+.|++.|++.+....-...+... ..+. .....++||+|+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~-~g--~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~--~~~~---~~~~~~~fDlVv 230 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALK-LG--AAKVVGIDIDPLAVESARKNAELNQVSDRLQVK--LIYL---EQPIEGKADVIV 230 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHH-cC--CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEE--eccc---ccccCCCceEEE
Confidence 458999999999988877765 33 358999999999999999887643211111110 0011 122356899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
++.+...+ ...+..+.++++ +||+|++....
T Consensus 231 an~~~~~l---~~ll~~~~~~Lk-pgG~li~sgi~ 261 (288)
T TIGR00406 231 ANILAEVI---KELYPQFSRLVK-PGGWLILSGIL 261 (288)
T ss_pred EecCHHHH---HHHHHHHHHHcC-CCcEEEEEeCc
Confidence 97654332 122334445554 79999997654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-07 Score=88.47 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=68.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..+++..+ ...+|++||.+++|++.|++.++... ++.++.. +..... ....+||+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~-~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~-----d~~~~~-~~~~~fD~ 149 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVG-RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVG-----DGTQGW-EPLAPYDR 149 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEEC-----CcccCC-cccCCCCE
Confidence 457999999999999988887654 23579999999999999998886543 2222221 121111 23458999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|++.....+++. .+.+.++ +||.||+.-
T Consensus 150 Ii~~~~~~~~~~------~~~~~L~-~gG~lv~~~ 177 (215)
T TIGR00080 150 IYVTAAGPKIPE------ALIDQLK-EGGILVMPV 177 (215)
T ss_pred EEEcCCcccccH------HHHHhcC-cCcEEEEEE
Confidence 999988777651 2333444 799998853
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-07 Score=93.39 Aligned_cols=112 Identities=18% Similarity=0.184 Sum_probs=74.9
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
..+|||+|||+|..+..+....+ ..+++++|.|+.|++.|+..++... +... .. ..+. +....++||+||+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p--~~~v~~vDis~~Al~~A~~nl~~n~-l~~~-~~--~~D~---~~~~~~~fDlIvs 267 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP--KIRLTLSDVSAAALESSRATLAANG-LEGE-VF--ASNV---FSDIKGRFDMIIS 267 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcC-CCCE-EE--Eccc---ccccCCCccEEEE
Confidence 46899999999999888887665 3579999999999999998776532 2110 00 0111 1123468999999
Q ss_pred cccccCCCC--HHHHHHHHHHHHhc--CCCEEEEEecCCCCchHHH
Q 012511 173 SYVLGEVPS--LQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSII 214 (462)
Q Consensus 173 s~vL~el~~--~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I 214 (462)
+..+|.... ......++++..+. +||.|+||-.. ...|+.+
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~-~l~y~~~ 312 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA-FLPYPDL 312 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC-CCChHHH
Confidence 988876422 23334455554443 79999998764 4556544
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-07 Score=88.22 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=64.4
Q ss_pred CCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc--cCCCCC
Q 012511 88 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD--ISKSER 165 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~--l~~~~~ 165 (462)
++-.+..+|||+|||+|..+..+++..+ ..+|+++|.|++|++.+.+.++...++..+... .... ......
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~--~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D-----~~~~~~~~~l~~ 140 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE--EGVVYAVEFAPRPMRELLEVAEERKNIIPILAD-----ARKPERYAHVVE 140 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC--CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECC-----CCCcchhhhccc
Confidence 3333457999999999999888888664 358999999999999776665543444333221 1100 001124
Q ss_pred cccEEEecccccCCCCHHHH---HHHHHHHHhcCCCEEEE
Q 012511 166 EHDLVIASYVLGEVPSLQDR---ITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 166 ~fDLVias~vL~el~~~~~r---~~~i~~Lw~~~gG~LVl 202 (462)
+||+|++. ++++... +..+.++++ +||.|+|
T Consensus 141 ~~D~i~~d-----~~~p~~~~~~L~~~~r~LK-pGG~lvI 174 (226)
T PRK04266 141 KVDVIYQD-----VAQPNQAEIAIDNAEFFLK-DGGYLLL 174 (226)
T ss_pred cCCEEEEC-----CCChhHHHHHHHHHHHhcC-CCcEEEE
Confidence 69999853 3333322 344555554 7999999
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.6e-07 Score=87.52 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhH
Q 012511 74 YSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSI 153 (462)
Q Consensus 74 Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~ 153 (462)
.......+..+.... ..+.+|||+|||+|..+.++... + ..+++++|+|+.|++.|++++....-...+.
T Consensus 103 h~tt~~~l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~-g--~~~v~giDis~~~l~~A~~n~~~~~~~~~~~----- 172 (250)
T PRK00517 103 HPTTRLCLEALEKLV--LPGKTVLDVGCGSGILAIAAAKL-G--AKKVLAVDIDPQAVEAARENAELNGVELNVY----- 172 (250)
T ss_pred CHHHHHHHHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHHcCCCceEE-----
Confidence 333444455554432 24589999999999888777653 2 2369999999999999998775432101110
Q ss_pred hhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 154 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 154 ~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
+.....+||+|+++...+.+ ......+.++++ +||.||+...
T Consensus 173 ------~~~~~~~fD~Vvani~~~~~---~~l~~~~~~~Lk-pgG~lilsgi 214 (250)
T PRK00517 173 ------LPQGDLKADVIVANILANPL---LELAPDLARLLK-PGGRLILSGI 214 (250)
T ss_pred ------EccCCCCcCEEEEcCcHHHH---HHHHHHHHHhcC-CCcEEEEEEC
Confidence 11122279999987532221 122223333443 7999999654
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-07 Score=91.00 Aligned_cols=104 Identities=19% Similarity=0.208 Sum_probs=73.4
Q ss_pred CCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHH---HHhhcCCCCCCceecchhHhhhhhccCCCC
Q 012511 88 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAG---QSLMQGPKDLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~A---k~ll~~~~~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
+++.++++|||||||.|..+|.+... ....|+|+|++....-.. +..+........+. ..+. .++. .
T Consensus 111 l~~L~gk~VLDIGC~nGY~~frM~~~---GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp--lgvE----~Lp~-~ 180 (315)
T PF08003_consen 111 LPDLKGKRVLDIGCNNGYYSFRMLGR---GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP--LGVE----DLPN-L 180 (315)
T ss_pred hCCcCCCEEEEecCCCcHHHHHHhhc---CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC--cchh----hccc-c
Confidence 34667899999999999999987763 346899999999765443 33332111111110 0111 2344 5
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
+.||+|+|--||-|..++-..+..+++.++ +||.|||
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvL 217 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLR-PGGELVL 217 (315)
T ss_pred CCcCEEEEeeehhccCCHHHHHHHHHHhhC-CCCEEEE
Confidence 789999999999999999888888888776 5999987
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.1e-08 Score=89.89 Aligned_cols=133 Identities=24% Similarity=0.261 Sum_probs=81.7
Q ss_pred cccCHHHHHHHHHhcCchhHHH--HHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHH
Q 012511 55 LKYRDDETIAYVASRMPAVYSA--CYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQR 132 (462)
Q Consensus 55 ~~y~~~e~~AYla~r~p~~Ya~--~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~ 132 (462)
+-|++.+|.-|..+.--..+.+ ..+.|.-| .+|+..+.-|||||||+|...-.+.+ ....+++||+|+.|++
T Consensus 13 lfYnd~eA~kYt~nsri~~IQ~em~eRaLELL--alp~~~~~~iLDIGCGsGLSg~vL~~----~Gh~wiGvDiSpsML~ 86 (270)
T KOG1541|consen 13 LFYNDTEAPKYTQNSRIVLIQAEMAERALELL--ALPGPKSGLILDIGCGSGLSGSVLSD----SGHQWIGVDISPSMLE 86 (270)
T ss_pred eeechhhhhhccccceeeeehHHHHHHHHHHh--hCCCCCCcEEEEeccCCCcchheecc----CCceEEeecCCHHHHH
Confidence 4566666666654322222221 12333332 24555778999999999976644443 5678999999999999
Q ss_pred HHHH-hhcCCCCCCceecchhHhhhhhccCCCCCcccEEEecccccCCCC-------HHHHH-HHHHHHHhc--CCCEEE
Q 012511 133 AGQS-LMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPS-------LQDRI-TIVRQLWDL--TRDVLV 201 (462)
Q Consensus 133 ~Ak~-ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~-------~~~r~-~~i~~Lw~~--~gG~LV 201 (462)
.|.+ .++ ++ ++ ..++...+|+.+++||-||+-..+.+|-+ +..|+ .++..|... .|+..|
T Consensus 87 ~a~~~e~e--gd--li-----l~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV 157 (270)
T KOG1541|consen 87 QAVERELE--GD--LI-----LCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAV 157 (270)
T ss_pred HHHHhhhh--cC--ee-----eeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeE
Confidence 9985 222 12 12 23466678888999999998777776643 33443 344445443 355555
Q ss_pred E
Q 012511 202 L 202 (462)
Q Consensus 202 l 202 (462)
+
T Consensus 158 ~ 158 (270)
T KOG1541|consen 158 L 158 (270)
T ss_pred E
Confidence 5
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-07 Score=86.17 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=75.8
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC-CCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~-~~~~~fDLVi 171 (462)
..+|||+|||.|..+-.+.+. ...+..|||++++.+..+.. + .++.++. ++...+. +++++||.||
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~---k~v~g~GvEid~~~v~~cv~--r---Gv~Viq~-----Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE---KQVDGYGVEIDPDNVAACVA--R---GVSVIQG-----DLDEGLADFPDQSFDYVI 80 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh---cCCeEEEEecCHHHHHHHHH--c---CCCEEEC-----CHHHhHhhCCCCCccEEe
Confidence 479999999999988877774 35688999999998766543 2 2445543 3444453 6788999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
.+.+|.++..++. ++++|++- |...|+ +-..|... +.|-.++
T Consensus 81 lsqtLQ~~~~P~~---vL~EmlRV-gr~~IV----sFPNFg~W-~~R~~l~ 122 (193)
T PF07021_consen 81 LSQTLQAVRRPDE---VLEEMLRV-GRRAIV----SFPNFGHW-RNRLQLL 122 (193)
T ss_pred hHhHHHhHhHHHH---HHHHHHHh-cCeEEE----EecChHHH-HHHHHHH
Confidence 9999999986665 67788875 555555 22234433 3455555
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-07 Score=92.85 Aligned_cols=112 Identities=10% Similarity=0.207 Sum_probs=72.0
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-CCCCc--eecchhHhhhhh
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPL--IHSYNSIQALNK 158 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-~~~~~--i~~~~~~~~l~~ 158 (462)
.+|...++ .+.+|||+|||+|..+..+.+.++. ..+|++||+|++|++.+++.+... +.+.. +.. ++..
T Consensus 55 ~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~-~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~g-----D~~~ 126 (301)
T TIGR03438 55 DEIAAATG--AGCELVELGSGSSRKTRLLLDALRQ-PARYVPIDISADALKESAAALAADYPQLEVHGICA-----DFTQ 126 (301)
T ss_pred HHHHHhhC--CCCeEEecCCCcchhHHHHHHhhcc-CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEE-----cccc
Confidence 34444443 3478999999999999888876642 468999999999999998776542 22221 221 2221
Q ss_pred c--cCCC--CCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 159 D--ISKS--EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 159 ~--l~~~--~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
. ++.. .....+++++.++++++ +++...+++++.+. +||.|+|
T Consensus 127 ~~~~~~~~~~~~~~~~~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 127 PLALPPEPAAGRRLGFFPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred hhhhhcccccCCeEEEEecccccCCC-HHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 1111 11233555667888886 76666777776654 7888876
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.6e-07 Score=84.82 Aligned_cols=116 Identities=15% Similarity=0.121 Sum_probs=72.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
...+|||+|||+|..+..++..++ ...+++++|.|+.|++.+++.++..+ ++.++.. +....++.....||
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~-~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~-----d~~~~l~~~~~~~D 113 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVG-ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKG-----EAPEILFTINEKFD 113 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEe-----chhhhHhhcCCCCC
Confidence 457999999999999888776554 24589999999999999998776433 2222221 11111222235799
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
+|++.... ......+..+.++++ +||.+|+ +.- -++.+.++.+.+
T Consensus 114 ~V~~~~~~---~~~~~~l~~~~~~Lk-pgG~lv~-~~~---~~~~~~~~~~~l 158 (198)
T PRK00377 114 RIFIGGGS---EKLKEIISASWEIIK-KGGRIVI-DAI---LLETVNNALSAL 158 (198)
T ss_pred EEEECCCc---ccHHHHHHHHHHHcC-CCcEEEE-Eee---cHHHHHHHHHHH
Confidence 99986422 223344444445554 7999986 332 334455555554
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.9e-07 Score=95.02 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=70.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-C-CCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-D-LPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~-~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+|||+|||+|.....++...| ..+|++||.|+.|++.|+..++... . ...+... ..+....+ ...+||+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P--~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~--~~~~fDlI 302 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP--QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM--INNALSGV--EPFRFNAV 302 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--EccccccC--CCCCEEEE
Confidence 46999999999999988888766 3589999999999999998775322 1 1111110 11111111 23589999
Q ss_pred EecccccCC--CCHHHHHHHHHHHHhc--CCCEEEEEecCCCCchH
Q 012511 171 IASYVLGEV--PSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 171 ias~vL~el--~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~ 212 (462)
+++--+|.. .+......++....+. +||.|+||-. ...+|.
T Consensus 303 lsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n-r~l~y~ 347 (378)
T PRK15001 303 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN-RHLDYF 347 (378)
T ss_pred EECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe-cCcCHH
Confidence 997554432 1233334455444432 7999998842 334443
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.3e-07 Score=84.59 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=74.7
Q ss_pred HHHHHHHCCC-CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchh----Hhh
Q 012511 81 LCEVRRRLPG-FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNS----IQA 155 (462)
Q Consensus 81 L~eL~~rlp~-~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~----~~~ 155 (462)
|.++..+... .++.+|||+|||||..+..+++..+. ...|++||+++ |. ...++.+++.... .+.
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~-~~~V~aVDi~~-~~--------~~~~v~~i~~D~~~~~~~~~ 108 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGD-KGRVIACDILP-MD--------PIVGVDFLQGDFRDELVLKA 108 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCC-CceEEEEeccc-cc--------CCCCcEEEecCCCChHHHHH
Confidence 3344444432 23569999999999988888877652 45899999998 32 1122322222100 011
Q ss_pred hhhccCCCCCcccEEEecccccCCCCH-----------HHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 156 LNKDISKSEREHDLVIASYVLGEVPSL-----------QDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 156 l~~~l~~~~~~fDLVias~vL~el~~~-----------~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
+... ...++||+|+++.+.+...+. ...+..+.++++ +||.|++.......=-+.+.++|..+.
T Consensus 109 i~~~--~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~~~~~~~~~~l~~l~~~f~ 183 (209)
T PRK11188 109 LLER--VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA-PGGSFVVKVFQGEGFDEYLREIRSLFT 183 (209)
T ss_pred HHHH--hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEEecCcCHHHHHHHHHhCce
Confidence 1111 235689999998776655332 122344444444 799999977655443455666665544
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.4e-08 Score=91.41 Aligned_cols=97 Identities=23% Similarity=0.266 Sum_probs=69.9
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC-CCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~-~~~~~fDLVi 171 (462)
-.+|||+|||||...-++.+ ...++++||+|+.|+++|.+. +..+ .+.+ .++...++ ....+||||+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~----~a~~ltGvDiS~nMl~kA~eK--g~YD-~L~~-----Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRD----MADRLTGVDISENMLAKAHEK--GLYD-TLYV-----AEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred cceeeecccCcCcccHhHHH----HHhhccCCchhHHHHHHHHhc--cchH-HHHH-----HHHHHHhhhccCCcccchh
Confidence 37999999999988777776 345799999999999998752 2111 0111 11111122 2457899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
+.-||.++.+.+.....+..+++ +||.|.+
T Consensus 194 AaDVl~YlG~Le~~~~~aa~~L~-~gGlfaF 223 (287)
T COG4976 194 AADVLPYLGALEGLFAGAAGLLA-PGGLFAF 223 (287)
T ss_pred hhhHHHhhcchhhHHHHHHHhcC-CCceEEE
Confidence 99999999888887777778876 6898877
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.3e-07 Score=90.02 Aligned_cols=120 Identities=15% Similarity=0.105 Sum_probs=73.9
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
-+..+..++....+.+|||+|||-|..+..+++.++ .+|++|..|++..+.+++.+++.+....+... ..++.+
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g---~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~--~~D~~~- 123 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG---CHVTGITLSEEQAEYARERIREAGLEDRVEVR--LQDYRD- 123 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEE--ES-GGG-
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC---cEEEEEECCHHHHHHHHHHHHhcCCCCceEEE--Eeeccc-
Confidence 444555555444568999999999988888777653 58999999999999999988765422222111 122321
Q ss_pred cCCCCCcccEEEecccccCCCC--HHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 160 ISKSEREHDLVIASYVLGEVPS--LQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~--~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
+ ..+||-||+--++.|+.. ...-...+.++++ |||.+++-....+.
T Consensus 124 ~---~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 124 L---PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVLQTITHRD 171 (273)
T ss_dssp ------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEEEEEEE--
T ss_pred c---CCCCCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEEEeccccc
Confidence 2 339999999999999952 2344555666664 79999875544443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.7e-07 Score=86.26 Aligned_cols=102 Identities=21% Similarity=-0.003 Sum_probs=65.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC------------CCceecchhHhhhhhcc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD------------LPLIHSYNSIQALNKDI 160 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~------------~~~i~~~~~~~~l~~~l 160 (462)
..+|||+|||.|..+..+++ ...+|++||+|+.+++.+.... +... ...+. ....++....
T Consensus 38 ~~rvL~~gCG~G~da~~LA~----~G~~V~avD~s~~Ai~~~~~~~-~l~~~~~~~~~~~~~~~~~v~--~~~~D~~~l~ 110 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAE----QGHEVLGVELSELAVEQFFAEN-GLTPQTRQSGEFEHYQAGEIT--IYCGDFFALT 110 (218)
T ss_pred CCeEEEeCCCChHhHHHHHh----CCCeEEEEccCHHHHHHHHHHc-CCCccccccccccccccCceE--EEECcccCCC
Confidence 46999999999988877776 4568999999999999764211 0000 00010 0011221111
Q ss_pred CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 161 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
+.....||+|+..-++++++ ++.|..++..+.+. |||.+++
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 111 AADLADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred cccCCCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence 11235899999999999996 77777766666554 7886554
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-06 Score=82.80 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=49.0
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
..+|||+|||+|..+..++.. + ..+++++|.|+.|++.++..+.... +..++.. ++...+ ...+||+|+
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~--~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~-----d~~~~~--~~~~fD~Vi 106 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-G--AGSVTAVDISRRAVRSARLNALLAGVDVDVRRG-----DWARAV--EFRPFDVVV 106 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEEC-----chhhhc--cCCCeeEEE
Confidence 469999999999988777653 2 3489999999999999988775432 1212211 222112 346899999
Q ss_pred ec
Q 012511 172 AS 173 (462)
Q Consensus 172 as 173 (462)
++
T Consensus 107 ~n 108 (223)
T PRK14967 107 SN 108 (223)
T ss_pred EC
Confidence 86
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.4e-07 Score=89.02 Aligned_cols=99 Identities=22% Similarity=0.281 Sum_probs=65.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCc-eecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPL-IHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~-i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
++.+|||+|||+|.++.|++.. ...+++++|+.+-.++.|+++++... ++. ++. . ....... ...++||+|
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kL---GA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~~~~--~-~~~~~~~-~~~~~~DvI 233 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKL---GAKKVVGVDIDPQAVEAARENARLNG-VELLVQA--K-GFLLLEV-PENGPFDVI 233 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHc---CCceEEEecCCHHHHHHHHHHHHHcC-Cchhhhc--c-cccchhh-cccCcccEE
Confidence 6789999999999999998873 34689999999999999999876432 221 110 0 0010001 134699999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|++- |-+. ......-+..+++ |||+||+
T Consensus 234 VANI-LA~v--l~~La~~~~~~lk-pgg~lIl 261 (300)
T COG2264 234 VANI-LAEV--LVELAPDIKRLLK-PGGRLIL 261 (300)
T ss_pred Eehh-hHHH--HHHHHHHHHHHcC-CCceEEE
Confidence 9886 3322 1122334455554 6999998
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.1e-07 Score=86.13 Aligned_cols=101 Identities=18% Similarity=0.269 Sum_probs=73.8
Q ss_pred CCCC-CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcc
Q 012511 89 PGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 89 p~~~-p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+|+ ..+|||||+|.|..+.++...+|. .++++.|. ++.++.++. ...+.++.. ++-..+| . +
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~--l~~~v~Dl-p~v~~~~~~----~~rv~~~~g-----d~f~~~P---~-~ 159 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPN--LRATVFDL-PEVIEQAKE----ADRVEFVPG-----DFFDPLP---V-A 159 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTT--SEEEEEE--HHHHCCHHH----TTTEEEEES------TTTCCS---S-E
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCC--Ccceeecc-Hhhhhcccc----ccccccccc-----cHHhhhc---c-c
Confidence 3454 468999999999999999999984 48999998 888888877 223333332 2222232 2 9
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc--CC--CEEEEEecC
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL--TR--DVLVLVEPG 206 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~--~g--G~LVlVEpG 206 (462)
|+|+.+++||..+ +++...+++++.+. || |.|+|+|.-
T Consensus 160 D~~~l~~vLh~~~-d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 160 DVYLLRHVLHDWS-DEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp SEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred cceeeehhhhhcc-hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 9999999999997 77778888888775 67 999999974
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-06 Score=82.06 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=69.7
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+|||+|||+|..+.+++..+|+ ..+++||+|..|++.|+..+... .++.++... ...+.... ...+.+|.|
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d--~~~~~~~~-~~~~~~d~v 91 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGD--ANELLDKF-FPDGSLSKV 91 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccC--HHHHHHhh-CCCCceeEE
Confidence 469999999999999988887763 58999999999999998776542 233333221 11111111 234589999
Q ss_pred EecccccCCCCH--------HHHHHHHHHHHhcCCCEEEEEec
Q 012511 171 IASYVLGEVPSL--------QDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 171 ias~vL~el~~~--------~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
++++...+.... ...+..+.++++ +||.|++.-.
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lk-pgG~l~~~td 133 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLK-KGGVIHFKTD 133 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhC-CCCEEEEEeC
Confidence 988754433211 233445555554 6999988653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=86.13 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=68.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.|.+|||+|||+|+.+..++..+| ..++++||+++++++.|++.+.... ++.++.. +....+.....+||
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p--~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~-----Da~~~l~~~~~~yD 138 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP--DTRQTAVEINPQVIAVARNHFELPENGERFEVIEA-----DGAEYIAVHRHSTD 138 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEEC-----CHHHHHHhCCCCCC
Confidence 468999999999999988888776 3589999999999999998775322 2222221 11111222245899
Q ss_pred EEEecccc-cCCCC---HHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 169 LVIASYVL-GEVPS---LQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 169 LVias~vL-~el~~---~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
+|++...- ...+. ..+-.+.+.++++ +||.|++--.+.
T Consensus 139 ~I~~D~~~~~~~~~~l~t~efl~~~~~~L~-pgGvlvin~~~~ 180 (262)
T PRK04457 139 VILVDGFDGEGIIDALCTQPFFDDCRNALS-SDGIFVVNLWSR 180 (262)
T ss_pred EEEEeCCCCCCCccccCcHHHHHHHHHhcC-CCcEEEEEcCCC
Confidence 99975311 12211 1233444445554 799998843333
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-06 Score=70.40 Aligned_cols=100 Identities=22% Similarity=0.286 Sum_probs=64.5
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
+|||+|||+|..+..+.. . ...+++++|.++.+++.+++..... ....++.. +..........+||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~-~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G--PGARVTGVDISPVALELARKAAAALLADNVEVLKG-----DAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEc-----ChhhhccccCCceEEEEE
Confidence 589999999998887776 2 3569999999999999888433221 12222221 111111113468999999
Q ss_pred cccccCC-CCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 173 SYVLGEV-PSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 173 s~vL~el-~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
..+++++ ......+..+..+++ ++|.+++.
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~l~-~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHLVEDLARFLEEARRLLK-PGGVLVLT 103 (107)
T ss_pred ccceeehhhHHHHHHHHHHHHcC-CCCEEEEE
Confidence 9999884 333343444444443 68988875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.3e-07 Score=75.68 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=65.5
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcccEE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+|||+|||+|+.+.++.+.. ..+++++|+++..++.|+..+..... ..++... ..++.. ....++||+|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~---~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D--~~~~~~--~~~~~~~D~I 74 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG---AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGD--ARDLPE--PLPDGKFDLI 74 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC---TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESH--HHHHHH--TCTTT-EEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC---CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECc--hhhchh--hccCceeEEE
Confidence 589999999999999988865 36899999999999999988765421 1222211 112221 1346789999
Q ss_pred EecccccCCCCHH-----HHHHHHHHHHhc--CCCEEEEEec
Q 012511 171 IASYVLGEVPSLQ-----DRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 171 ias~vL~el~~~~-----~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
+++--........ .-..+++++.+. +||.++++-+
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9975554321111 112344444443 6999988754
|
... |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.2e-07 Score=88.40 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchh
Q 012511 73 VYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNS 152 (462)
Q Consensus 73 ~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~ 152 (462)
+...+.-.|..|.+.. .++.+|||+|||+|.++.+++.. + ..+|+++|+++.+++.|++++...+-...+...
T Consensus 144 ~H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~kl-G--A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-- 216 (295)
T PF06325_consen 144 HHPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKL-G--AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-- 216 (295)
T ss_dssp HCHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHT-T--BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--
T ss_pred CCHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHc-C--CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--
Confidence 3444444555555442 34579999999999999988874 3 468999999999999999987543211112110
Q ss_pred HhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 153 IQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 153 ~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
.. ......+||||+++-..+-|- .....+.++++ +||+||+
T Consensus 217 ---~~--~~~~~~~~dlvvANI~~~vL~---~l~~~~~~~l~-~~G~lIl 257 (295)
T PF06325_consen 217 ---LS--EDLVEGKFDLVVANILADVLL---ELAPDIASLLK-PGGYLIL 257 (295)
T ss_dssp ---CT--SCTCCS-EEEEEEES-HHHHH---HHHHHCHHHEE-EEEEEEE
T ss_pred ---Ee--cccccccCCEEEECCCHHHHH---HHHHHHHHhhC-CCCEEEE
Confidence 11 112347999999886544331 11223344443 6899998
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=82.38 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=65.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+..++... .+++++|.+++|++.+++.+.... ++.++.. +....++ ..++||+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~----~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~~~~-~~~~fD~ 147 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV----RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG-----DGWKGWP-AYAPFDR 147 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh----CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC-----CcccCCC-cCCCcCE
Confidence 45799999999998776666542 379999999999999998876532 2222221 1111122 2468999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|++...+.+++. .+..+++ +||.|++.-.
T Consensus 148 I~~~~~~~~~~~------~l~~~L~-~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAAPEIPR------ALLEQLK-EGGILVAPVG 176 (212)
T ss_pred EEEccCchhhhH------HHHHhcC-CCcEEEEEEc
Confidence 999988777641 2334444 6999988654
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-06 Score=84.04 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=77.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhh---ccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK---DISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~---~l~~~~~~fD 168 (462)
.+.+||++|||.|..+|-+.+.-++....+.++|.|+.+++..++...-. ....+.. +-+++. .-+...++.|
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~--e~~~~af--v~Dlt~~~~~~~~~~~svD 146 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD--ESRVEAF--VWDLTSPSLKEPPEEGSVD 146 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc--hhhhccc--ceeccchhccCCCCcCccc
Confidence 44589999999999999998887766689999999999999888654321 1111111 112211 1123568999
Q ss_pred EEEecccccCCCCHHHH---HHHHHHHHhcCCCEEEEEecCC
Q 012511 169 LVIASYVLGEVPSLQDR---ITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 169 LVias~vL~el~~~~~r---~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
+|++-++|..++ ++.- +..+..|++ |||.|++-+-|.
T Consensus 147 ~it~IFvLSAi~-pek~~~a~~nl~~llK-PGG~llfrDYg~ 186 (264)
T KOG2361|consen 147 IITLIFVLSAIH-PEKMQSVIKNLRTLLK-PGGSLLFRDYGR 186 (264)
T ss_pred eEEEEEEEeccC-hHHHHHHHHHHHHHhC-CCcEEEEeeccc
Confidence 999999999997 5443 445555555 899999977654
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.8e-06 Score=81.43 Aligned_cols=73 Identities=22% Similarity=0.345 Sum_probs=52.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.|+..+.... ++.++.. ++... ....+||+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-----d~~~~--~~~~~fD~ 157 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP--DARVTAVDISPEALAVARKNAARLGLDNVTFLQS-----DWFEP--LPGGKFDL 157 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEEC-----chhcc--CcCCceeE
Confidence 346999999999999999998775 3589999999999999998875432 2222221 22111 23568999
Q ss_pred EEec
Q 012511 170 VIAS 173 (462)
Q Consensus 170 Vias 173 (462)
|+++
T Consensus 158 Vi~n 161 (251)
T TIGR03534 158 IVSN 161 (251)
T ss_pred EEEC
Confidence 9985
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.5e-06 Score=79.69 Aligned_cols=38 Identities=24% Similarity=0.139 Sum_probs=30.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHH
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSM 130 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~m 130 (462)
++.+|||+|||||..+.++...+. ...+++++|+|+.|
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~-~~~~v~~vDis~~~ 69 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVG-GKGRVIAVDLQPMK 69 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhC-CCceEEEEeccccc
Confidence 357999999999998887777653 23579999999865
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.6e-06 Score=82.95 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=52.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc-CC-CCCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ-GP-KDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~-~~-~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+.+++..++ ..+++++|+|+.|++.|+..+. .. .++.++.. ++...+ ...+||+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~--~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~-----d~~~~~--~~~~fD~ 178 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERP--DAEVTAVDISPEALAVARRNAKHGLGARVEFLQG-----DWFEPL--PGGRFDL 178 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEc-----cccCcC--CCCceeE
Confidence 457999999999999988888765 3589999999999999998876 21 12222221 121111 2468999
Q ss_pred EEec
Q 012511 170 VIAS 173 (462)
Q Consensus 170 Vias 173 (462)
||++
T Consensus 179 Iv~n 182 (275)
T PRK09328 179 IVSN 182 (275)
T ss_pred EEEC
Confidence 9985
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.2e-06 Score=83.47 Aligned_cols=111 Identities=21% Similarity=0.298 Sum_probs=67.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.|.+||++|||.|..+..+.... ...+|++||+++.|++.|++.+.... ..+.+... ..+....+....++|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~--~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~--~~Da~~~l~~~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP--SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELV--IGDGIKFVAETENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC--CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEE--ECchHHHHhhCCCcc
Confidence 47899999999999888777632 35689999999999999998775321 11222110 111111122235689
Q ss_pred cEEEecccccCCCCH----HHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 168 DLVIASYVLGEVPSL----QDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 168 DLVias~vL~el~~~----~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
|+||+...-...+.. .+-.+.++++++ +||.+|+ -.+++
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~gGvlv~-~~~~~ 194 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALK-EDGIFVA-QSGSP 194 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEE-eCCCc
Confidence 999986433222211 233345556664 6998876 34444
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.8e-06 Score=77.93 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=51.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
...+|||+|||+|..+..+++. ..+++++|.++.|++.+++.+....++.+++.. ... ++.....||+|+
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~----~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D-----~~~-~~~~~~~~d~vi 82 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER----AARVTAIEIDPRLAPRLREKFAAADNLTVIHGD-----ALK-FDLPKLQPYKVV 82 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc----CCeEEEEECCHHHHHHHHHHhccCCCEEEEECc-----hhc-CCccccCCCEEE
Confidence 3469999999999999888763 358999999999999999887653334333321 211 222334689988
Q ss_pred eccc
Q 012511 172 ASYV 175 (462)
Q Consensus 172 as~v 175 (462)
++--
T Consensus 83 ~n~P 86 (169)
T smart00650 83 GNLP 86 (169)
T ss_pred ECCC
Confidence 7643
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-06 Score=80.94 Aligned_cols=130 Identities=19% Similarity=0.162 Sum_probs=69.6
Q ss_pred chhHHHHHH-HHHHHHHHCCCCCCCeEEEECCchhHH----HHHHHHhCCC---CccEEEEEeCCHHHHHHHHHhh-c--
Q 012511 71 PAVYSACYR-VLCEVRRRLPGFSPAKVLDFGAGTGSA----FWALREVWPR---SLEKVNLVEPSQSMQRAGQSLM-Q-- 139 (462)
Q Consensus 71 p~~Ya~~~~-vL~eL~~rlp~~~p~rVLDvG~G~G~~----~~al~~~~~~---~~~~v~~VD~S~~ml~~Ak~ll-~-- 139 (462)
|..+..+.. ++.++..+.....+.+|+-+||++|.- +..+.+..+. ...+++++|+|+.+++.|+.-. .
T Consensus 9 ~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~ 88 (196)
T PF01739_consen 9 PEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPER 88 (196)
T ss_dssp TTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGG
T ss_pred HHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHH
Confidence 445555544 332444333333678999999999943 3334443222 2469999999999999998643 1
Q ss_pred CCCCCCc------e-ec---c------------hhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--
Q 012511 140 GPKDLPL------I-HS---Y------------NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-- 195 (462)
Q Consensus 140 ~~~~~~~------i-~~---~------------~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~-- 195 (462)
...++|. . .. . +...++.. .+...+.||+|+|-|||.++. .+.+..+++.+.+.
T Consensus 89 ~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~l~~~L~ 166 (196)
T PF01739_consen 89 SLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRRLHRSLK 166 (196)
T ss_dssp GGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEE
T ss_pred HHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHHHHHHcC
Confidence 1112210 0 00 0 00112222 123467899999999999995 88888899988886
Q ss_pred CCCEEEE
Q 012511 196 TRDVLVL 202 (462)
Q Consensus 196 ~gG~LVl 202 (462)
+||+|+|
T Consensus 167 pgG~L~l 173 (196)
T PF01739_consen 167 PGGYLFL 173 (196)
T ss_dssp EEEEEEE
T ss_pred CCCEEEE
Confidence 7999998
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-06 Score=82.14 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=73.9
Q ss_pred chhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCcee
Q 012511 71 PAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIH 148 (462)
Q Consensus 71 p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~ 148 (462)
|..++.+...|. -.+..+|||+|||+|..+-.++...+ ....|++||..+.+.+.|++.+.... ++.+++
T Consensus 58 P~~~a~~l~~L~-------l~pg~~VLeIGtGsGY~aAlla~lvg-~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALD-------LKPGDRVLEIGTGSGYQAALLAHLVG-PVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTT-------C-TT-EEEEES-TTSHHHHHHHHHHS-TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHh-------cCCCCEEEEecCCCcHHHHHHHHhcC-ccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 455555554443 11347999999999988877777665 35689999999999999999987532 333333
Q ss_pred cchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 149 SYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 149 ~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
. +.....+ ...+||.|+++..+.++|. .++++| ++||.||+.-.
T Consensus 130 g-----dg~~g~~-~~apfD~I~v~~a~~~ip~-----~l~~qL--~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 G-----DGSEGWP-EEAPFDRIIVTAAVPEIPE-----ALLEQL--KPGGRLVAPIG 173 (209)
T ss_dssp S------GGGTTG-GG-SEEEEEESSBBSS--H-----HHHHTE--EEEEEEEEEES
T ss_pred c-----chhhccc-cCCCcCEEEEeeccchHHH-----HHHHhc--CCCcEEEEEEc
Confidence 2 1222222 3468999999999988862 255555 36999998554
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-05 Score=75.06 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=67.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
...+|||+|||+|..+..++...+ ..+++++|.|+.|++.+++.++... ++.++... ....++.....+|.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~--~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d-----~~~~~~~~~~~~d~ 112 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCP--KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS-----APECLAQLAPAPDR 112 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc-----hHHHHhhCCCCCCE
Confidence 347999999999998877766543 3689999999999999998775432 22222211 11111111224566
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHH
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSH 220 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~ 220 (462)
|+... .......+..+.++++ +||.+++..+. ++.+..+.+.
T Consensus 113 v~~~~----~~~~~~~l~~~~~~Lk-pgG~li~~~~~----~~~~~~~~~~ 154 (196)
T PRK07402 113 VCIEG----GRPIKEILQAVWQYLK-PGGRLVATASS----LEGLYAISEG 154 (196)
T ss_pred EEEEC----CcCHHHHHHHHHHhcC-CCeEEEEEeec----HHHHHHHHHH
Confidence 65432 1122333444444443 79999987653 4444445554
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.9e-06 Score=84.33 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=66.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+..+++..+. ...|++||.+++|++.|++.++..+ ++.++.. +..... ....+||+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~-~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g-----D~~~~~-~~~~~fD~ 152 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGE-KGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG-----DGYYGV-PEFAPYDV 152 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC-----Chhhcc-cccCCccE
Confidence 3479999999999988887776542 3469999999999999998776432 2222221 222112 22357999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|+++..+.+++. .+++ .++ +||.+++..
T Consensus 153 Ii~~~g~~~ip~-----~~~~-~Lk-pgG~Lvv~~ 180 (322)
T PRK13943 153 IFVTVGVDEVPE-----TWFT-QLK-EGGRVIVPI 180 (322)
T ss_pred EEECCchHHhHH-----HHHH-hcC-CCCEEEEEe
Confidence 999987776642 1233 333 699988754
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-05 Score=74.00 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=65.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--C--CCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D--LPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~--~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
++.+|||+|||+|..+..++.. ..+++++|.|+.|++.+++.+.... + +.++.. ++...+ ...+|
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-----d~~~~~--~~~~~ 91 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN----GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRS-----DLFEPF--RGDKF 91 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh----cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEec-----cccccc--cccCc
Confidence 4578999999999988887764 3589999999999999988765322 1 222221 122122 23479
Q ss_pred cEEEecccccCCCC------------------HHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 168 DLVIASYVLGEVPS------------------LQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 168 DLVias~vL~el~~------------------~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
|+|+++..+..-.. ......+++++++. ++|.++++.+.
T Consensus 92 d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 92 DVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred eEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 99998765433111 11122344444443 79988887653
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-05 Score=83.27 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=51.9
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
..+|||+|||+|..+.+++...+ ..+++++|.|+.|++.|+++++... ++.++.. ++.........+||+||
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p--~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~g-----Dl~e~~l~~~~~FDLIV 324 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERP--DAFVRASDISPPALETARKNAADLGARVEFAHG-----SWFDTDMPSEGKWDIIV 324 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEc-----chhccccccCCCccEEE
Confidence 35999999999999888876554 3589999999999999999876533 2222222 22111101235799999
Q ss_pred ecc
Q 012511 172 ASY 174 (462)
Q Consensus 172 as~ 174 (462)
++-
T Consensus 325 SNP 327 (423)
T PRK14966 325 SNP 327 (423)
T ss_pred ECC
Confidence 953
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=80.40 Aligned_cols=76 Identities=21% Similarity=0.317 Sum_probs=54.3
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEec-
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS- 173 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias- 173 (462)
+|||+|||+|..+.+++...+. .+|+++|+|+.+++.|+.++...+-.. +.... .++ +....++||+||++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~-~~~~~--~dl---f~~~~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGLVR-VLVVQ--SDL---FEPLRGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCcc-EEEEe--eec---ccccCCceeEEEeCC
Confidence 8999999999999999987763 689999999999999999887643111 11110 122 22234589999996
Q ss_pred -ccccC
Q 012511 174 -YVLGE 178 (462)
Q Consensus 174 -~vL~e 178 (462)
|+-.+
T Consensus 185 PYip~~ 190 (280)
T COG2890 185 PYIPAE 190 (280)
T ss_pred CCCCCc
Confidence 55444
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.5e-06 Score=79.08 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=68.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC-CCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~-~~~~~fDLVi 171 (462)
..+|||+|||.|.+.++++...+ ..++++||+.++|.+.|++.++.......+... ..++..... ....+||+||
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~--~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~--~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTE--KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI--EADIKEFLKALVFASFDLII 120 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCC--CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEe--hhhHHHhhhcccccccCEEE
Confidence 58999999999999999888654 278999999999999999887653322222110 112222111 2334799999
Q ss_pred ecccccCCCCH------------------HHHHHHHHHHHhcCCCEEEEEec
Q 012511 172 ASYVLGEVPSL------------------QDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 172 as~vL~el~~~------------------~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|+==....... ++.+.....+++ ++|.|.+|-+
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk-~~G~l~~V~r 171 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK-PGGRLAFVHR 171 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc-CCCEEEEEec
Confidence 97433322211 122233334443 7999999876
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.5e-06 Score=78.81 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=72.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+||+||||+|..+-.+++.- .+|+.||..++..+.|++.++..+ |+..++. |-....+ ...+||.
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~----~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g-----DG~~G~~-~~aPyD~ 141 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLV----GRVVSIERIEELAEQARRNLETLGYENVTVRHG-----DGSKGWP-EEAPYDR 141 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHh----CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC-----CcccCCC-CCCCcCE
Confidence 45899999999998777777653 489999999999999999887654 3333332 2222232 4579999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|+++-...++|. .++++| ++||.||+..-
T Consensus 142 I~Vtaaa~~vP~-----~Ll~QL--~~gGrlv~PvG 170 (209)
T COG2518 142 IIVTAAAPEVPE-----ALLDQL--KPGGRLVIPVG 170 (209)
T ss_pred EEEeeccCCCCH-----HHHHhc--ccCCEEEEEEc
Confidence 999999999983 366676 47999999876
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-05 Score=79.98 Aligned_cols=107 Identities=18% Similarity=0.268 Sum_probs=65.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.|.+||++|||+|..+..+.... ...++++||+++.+++.+++.+..... .+.+... ..+....+....++||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~--~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~--~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK--SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQ--IDDGFKFLADTENTFD 147 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC--CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEE--ECchHHHHHhCCCCcc
Confidence 46799999999999887776532 256899999999999999987643211 1111100 0111111112246899
Q ss_pred EEEecccccCCCC----HHHHHHHHHHHHhcCCCEEEEE
Q 012511 169 LVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 169 LVias~vL~el~~----~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
+||+...-..-+. ..+..+.+.++++ +||.+++.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~-pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALN-EDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhC-CCcEEEEc
Confidence 9998655222111 1233445566665 69999886
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.3e-06 Score=81.07 Aligned_cols=106 Identities=14% Similarity=0.094 Sum_probs=63.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
+..+|||+|||||+.+..+++..+. ...|++||+|+.|++.....+....++..+...... ..........+|+|+
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~-~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~---p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGP-EGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARY---PQKYRMLVPMVDVIF 207 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCC-CCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccC---hhhhhcccCCCCEEE
Confidence 3469999999999999999987753 358999999997654333333322344333221100 000111234799999
Q ss_pred ecccccCCCCHHHH-HHHHHHHHhcCCCEEEEEec
Q 012511 172 ASYVLGEVPSLQDR-ITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 172 as~vL~el~~~~~r-~~~i~~Lw~~~gG~LVlVEp 205 (462)
+... .++.... ...+..+++ ++|.|+|..+
T Consensus 208 ~Dva---~pdq~~il~~na~r~LK-pGG~~vI~ik 238 (293)
T PTZ00146 208 ADVA---QPDQARIVALNAQYFLK-NGGHFIISIK 238 (293)
T ss_pred EeCC---CcchHHHHHHHHHHhcc-CCCEEEEEEe
Confidence 8874 2333222 224555665 6999999543
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=80.48 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=52.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+|||+|..+.+++..++ ..+++++|+|+.|++.|+..++... ++.++.. ++...+ ...+||
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~--~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~-----D~~~~~--~~~~fD 191 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP--EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS-----DLFAAL--PGRKYD 191 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----chhhcc--CCCCcc
Confidence 357999999999999999888765 3589999999999999998876432 1222222 222222 234799
Q ss_pred EEEec
Q 012511 169 LVIAS 173 (462)
Q Consensus 169 LVias 173 (462)
+||++
T Consensus 192 ~Iv~N 196 (284)
T TIGR03533 192 LIVSN 196 (284)
T ss_pred EEEEC
Confidence 99986
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.1e-06 Score=77.13 Aligned_cols=82 Identities=12% Similarity=0.066 Sum_probs=60.6
Q ss_pred EEEeCCHHHHHHHHHhhcCC-----CCCCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcC
Q 012511 122 NLVEPSQSMQRAGQSLMQGP-----KDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT 196 (462)
Q Consensus 122 ~~VD~S~~ml~~Ak~ll~~~-----~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~ 196 (462)
+|+|+|++|++.|++..+.. .++.++.. +.. .++...++||+|+++++|+++++....+.-+.++++ |
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~-----d~~-~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk-p 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEG-----DAI-DLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK-P 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEe-----chh-hCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcC-c
Confidence 58999999999998665421 12233322 222 356667799999999999999887776777777775 7
Q ss_pred CCEEEEEecCCCCc
Q 012511 197 RDVLVLVEPGTPQG 210 (462)
Q Consensus 197 gG~LVlVEpGtp~G 210 (462)
||.|+|+|.+.+..
T Consensus 74 GG~l~i~d~~~~~~ 87 (160)
T PLN02232 74 GSRVSILDFNKSNQ 87 (160)
T ss_pred CeEEEEEECCCCCh
Confidence 99999999987664
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-05 Score=76.89 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=51.2
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC-CCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK-SEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~-~~~~fDLVi 171 (462)
+.+|||+|||+|..+.+++...+ ..+++++|.|+.|++.|++.+.... ..++.. ++...++. ..++||+||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~--~~~v~~vDis~~al~~A~~N~~~~~-~~~~~~-----D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD--GIELHAADIDPAAVRCARRNLADAG-GTVHEG-----DLYDALPTALRGRVDILA 158 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcC-CEEEEe-----echhhcchhcCCCEeEEE
Confidence 45899999999999998887665 3589999999999999998876432 222221 12111211 135799999
Q ss_pred ec
Q 012511 172 AS 173 (462)
Q Consensus 172 as 173 (462)
++
T Consensus 159 ~N 160 (251)
T TIGR03704 159 AN 160 (251)
T ss_pred EC
Confidence 86
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=81.82 Aligned_cols=107 Identities=15% Similarity=0.190 Sum_probs=63.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh--hc---CCC-CCCceecchhHhhhhhccCCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL--MQ---GPK-DLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l--l~---~~~-~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.|.+||++|||+|.++..+.+. + ...++++||++++|++.|+.. +. ... +.+.+... ..+....+.....
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vv--i~Da~~fL~~~~~ 225 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-E-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVH--VCDAKEFLSSPSS 225 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-C-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEE--ECcHHHHHHhcCC
Confidence 5789999999999877777663 3 367999999999999999962 11 100 11222110 1111111222356
Q ss_pred cccEEEeccccc------CCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 166 EHDLVIASYVLG------EVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 166 ~fDLVias~vL~------el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+||+||+...-. .+. ..+-...+.+.++ +||++|+-.
T Consensus 226 ~YDVIIvDl~DP~~~~~~~Ly-T~EFy~~~~~~Lk-PgGV~V~Qs 268 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLY-TSELFARIATFLT-EDGAFVCQS 268 (374)
T ss_pred CccEEEEcCCCccccchhhhh-HHHHHHHHHHhcC-CCcEEEEec
Confidence 899999874211 111 1223344555554 799988763
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=80.87 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=52.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+.+|||+|||+|..+.+++..++ ..+++++|+|+.|++.|+..++..+ ++.++.. ++...+ ...+||+
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p--~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~-----D~~~~l--~~~~fDl 204 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFP--DAEVDAVDISPDALAVAEINIERHGLEDRVTLIES-----DLFAAL--PGRRYDL 204 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC-----chhhhC--CCCCccE
Confidence 36899999999999998888765 3689999999999999999876432 1222222 222222 2357999
Q ss_pred EEec
Q 012511 170 VIAS 173 (462)
Q Consensus 170 Vias 173 (462)
||++
T Consensus 205 IvsN 208 (307)
T PRK11805 205 IVSN 208 (307)
T ss_pred EEEC
Confidence 9986
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.5e-06 Score=77.52 Aligned_cols=126 Identities=14% Similarity=0.180 Sum_probs=83.7
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCC--ce--------------------
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP--LI-------------------- 147 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~--~i-------------------- 147 (462)
-|.|..+|||||-.|.++.+++..|+. ..+.|||+.+..+..|+..++...... ..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~--r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGP--RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhcc--ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 467899999999999999999999974 469999999999999998876432110 00
Q ss_pred --------ecchhHh------hhhhccCCCCCcccEEEeccccc--CCC-CHHHHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 148 --------HSYNSIQ------ALNKDISKSEREHDLVIASYVLG--EVP-SLQDRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 148 --------~~~~~~~------~l~~~l~~~~~~fDLVias~vL~--el~-~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
..+...+ .-++.+......||+|+|-.+-. ||. .++-...+++.+|++ |||+||+ .|
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv----EP 209 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV----EP 209 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE----cC
Confidence 0000000 00001112456899998855433 333 355667788888886 8999987 66
Q ss_pred CchHHHHHHHHHH
Q 012511 209 QGSSIISQMRSHI 221 (462)
Q Consensus 209 ~Gf~~I~~aR~~l 221 (462)
.+|..-..++..+
T Consensus 210 QpWksY~kaar~~ 222 (288)
T KOG2899|consen 210 QPWKSYKKAARRS 222 (288)
T ss_pred CchHHHHHHHHHH
Confidence 7777666655554
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-05 Score=77.52 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=51.3
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcccEE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+|||+|||+|..+.+++..++ ..+++++|.|+.+++.|+..++.... +.++.. ++...+ ...+||+|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~--~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~-----d~~~~~--~~~~fDlI 186 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP--NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS-----NLFEPL--AGQKIDII 186 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----chhccC--cCCCccEE
Confidence 6999999999999999888765 35899999999999999998764321 222221 222122 22379999
Q ss_pred Eec
Q 012511 171 IAS 173 (462)
Q Consensus 171 ias 173 (462)
|++
T Consensus 187 vsN 189 (284)
T TIGR00536 187 VSN 189 (284)
T ss_pred EEC
Confidence 986
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.9e-05 Score=77.04 Aligned_cols=112 Identities=21% Similarity=0.180 Sum_probs=73.7
Q ss_pred HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCC
Q 012511 87 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
.++.....+|||+|||.|.....+++..| ..+++.+|.|...++.|+..+.... +...... ++- ....
T Consensus 153 ~l~~~~~~~vlDlGCG~Gvlg~~la~~~p--~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s-----~~~---~~v~ 222 (300)
T COG2813 153 TLPPDLGGKVLDLGCGYGVLGLVLAKKSP--QAKLTLVDVNARAVESARKNLAANGVENTEVWAS-----NLY---EPVE 222 (300)
T ss_pred hCCccCCCcEEEeCCCccHHHHHHHHhCC--CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe-----ccc---cccc
Confidence 44443345999999999999888888776 4689999999999999999886432 1111111 121 1123
Q ss_pred CcccEEEecccccCCCCHH--HHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 165 REHDLVIASYVLGEVPSLQ--DRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~--~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
++||+||++==+|.=.... ...++|...-+. +||.|-||-.|.+
T Consensus 223 ~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l 270 (300)
T COG2813 223 GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL 270 (300)
T ss_pred ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC
Confidence 4999999997777543221 122344433332 6999999988443
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-05 Score=73.71 Aligned_cols=96 Identities=18% Similarity=0.214 Sum_probs=67.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+..+++|||||+|+.+..++...| ..+++++|.++++++..+.+++.+. ++..+... ....++.. .++|.
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p--~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~-----Ap~~L~~~-~~~da 105 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGP--SGRVIAIERDEEALELIERNAARFGVDNLEVVEGD-----APEALPDL-PSPDA 105 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc-----chHhhcCC-CCCCE
Confidence 347999999999999988775554 5799999999999999998887764 22233221 11123222 27999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
|+..-. ..++ .+++.+|.. +||.||+
T Consensus 106 iFIGGg-~~i~------~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 106 IFIGGG-GNIE------EILEAAWERLKPGGRLVA 133 (187)
T ss_pred EEECCC-CCHH------HHHHHHHHHcCcCCeEEE
Confidence 999877 4442 356666664 7999987
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.1e-05 Score=72.69 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=63.2
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC--CC--ceecchhHhh-hhhccCCCC
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LP--LIHSYNSIQA-LNKDISKSE 164 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~--~~--~i~~~~~~~~-l~~~l~~~~ 164 (462)
.+.+.+||++|||+|....+++...+ ..+|++.|.++ .++..+..++.... .. .+.. ..|.+ ..... ...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~--~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~-L~Wg~~~~~~~-~~~ 117 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG--AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRP-LDWGDELDSDL-LEP 117 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S--HHHHHHHHHHTT--------EEEE---TTS-HHHHH-HS-
T ss_pred hcCCceEEEECCccchhHHHHHhccC--CceEEEeccch-hhHHHHHHHHhccccccccccCcE-EEecCcccccc-ccc
Confidence 35678999999999988888777532 46899999999 88887777654321 11 1111 11111 11111 134
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
.+||+|+++-++..-...+.....+..+++..+.+++....
T Consensus 118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred ccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 68999999999987655566677888888754444444443
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.16 E-value=2e-05 Score=76.52 Aligned_cols=95 Identities=19% Similarity=0.289 Sum_probs=70.3
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccE
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+++..++||+|+|.|.++..++..| .+|++.|.|..|...-++ +++ ..+.. .++. ....+||+
T Consensus 92 ~~~~~~lLDlGAGdG~VT~~l~~~f----~~v~aTE~S~~Mr~rL~~--kg~---~vl~~----~~w~----~~~~~fDv 154 (265)
T PF05219_consen 92 DWKDKSLLDLGAGDGEVTERLAPLF----KEVYATEASPPMRWRLSK--KGF---TVLDI----DDWQ----QTDFKFDV 154 (265)
T ss_pred cccCCceEEecCCCcHHHHHHHhhc----ceEEeecCCHHHHHHHHh--CCC---eEEeh----hhhh----ccCCceEE
Confidence 4567899999999999998888765 469999999999766543 222 22211 1121 23468999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|.|-|+|.--..+...+.-+++.++ |+|.|||
T Consensus 155 IscLNvLDRc~~P~~LL~~i~~~l~-p~G~lil 186 (265)
T PF05219_consen 155 ISCLNVLDRCDRPLTLLRDIRRALK-PNGRLIL 186 (265)
T ss_pred EeehhhhhccCCHHHHHHHHHHHhC-CCCEEEE
Confidence 9999999988888887777777665 6999887
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.7e-05 Score=75.47 Aligned_cols=105 Identities=13% Similarity=0.231 Sum_probs=62.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccC-CCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDIS-KSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~-~~~~~f 167 (462)
++.+|||+|||+|..+.+++...+. ..+++++|.++++.+.|++.++..+- +.++... ....+..-.+ ...++|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gd-a~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSD-ALSALDQLLNNDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcc-HHHHHHHHHhCCCCCCC
Confidence 4689999999999877776665553 46899999999999999998865431 2222221 1111111011 124689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|+|++-.-= +....-.+.+..+++ +||.+|+
T Consensus 146 D~VfiDa~k---~~y~~~~~~~~~ll~-~GG~ii~ 176 (234)
T PLN02781 146 DFAFVDADK---PNYVHFHEQLLKLVK-VGGIIAF 176 (234)
T ss_pred CEEEECCCH---HHHHHHHHHHHHhcC-CCeEEEE
Confidence 999875311 111222333344444 6886554
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.8e-05 Score=83.61 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=51.1
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+.+|||+|||+|..+.+++..++ ..+++++|+|+.|++.|+..+.... .+.++.. ++...+ ...+||+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p--~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~-----D~~~~~--~~~~fDl 209 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP--NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHS-----NWFENI--EKQKFDF 209 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeec-----chhhhC--cCCCccE
Confidence 46899999999999888877665 3589999999999999998875432 1222221 121112 2357999
Q ss_pred EEec
Q 012511 170 VIAS 173 (462)
Q Consensus 170 Vias 173 (462)
||++
T Consensus 210 IvsN 213 (506)
T PRK01544 210 IVSN 213 (506)
T ss_pred EEEC
Confidence 9984
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.7e-05 Score=79.48 Aligned_cols=120 Identities=11% Similarity=0.042 Sum_probs=75.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
....+||+|||+|..+.+++...|+ ..++|||+++.|+..|...+... .++.++... ...+... ...+++|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~--~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~D--A~~ll~~--~~~~s~D~ 195 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPN--KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYD--ARLLLEL--LPSNSVEK 195 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCC--CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC--HHHhhhh--CCCCceeE
Confidence 3468999999999999999987763 58999999999999987776442 344333322 1111111 34678999
Q ss_pred EEecccccCCCCHH------HHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 170 VIASYVLGEVPSLQ------DRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 170 Vias~vL~el~~~~------~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
|++++..-+..... ..+..+.++++ +||.+.|.-.- ......+.+.+.
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLk-pGG~l~l~TD~----~~y~~~~~e~~~ 249 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLK-PGGTLELRTDS----ELYFEFSLELFL 249 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcC-CCcEEEEEEEC----HHHHHHHHHHHH
Confidence 99876544332222 23344555554 69999985432 233344455543
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.5e-05 Score=75.96 Aligned_cols=76 Identities=28% Similarity=0.405 Sum_probs=54.2
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
..+|||+|||+|..+..+....+ ..++++||+|+.|++.+++.+. +..++.. ++.. .. ...+||+||+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~--~~~V~gVDisp~al~~Ar~n~~---~v~~v~~-----D~~e-~~-~~~kFDlIIs 132 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK--PEKIVCVELNPEFARIGKRLLP---EAEWITS-----DVFE-FE-SNEKFDVVIS 132 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhCc---CCEEEEC-----chhh-hc-ccCCCcEEEE
Confidence 46999999999988877766443 3589999999999999988653 2333322 1221 11 2358999999
Q ss_pred cccccCCC
Q 012511 173 SYVLGEVP 180 (462)
Q Consensus 173 s~vL~el~ 180 (462)
+--.++++
T Consensus 133 NPPF~~l~ 140 (279)
T PHA03411 133 NPPFGKIN 140 (279)
T ss_pred cCCccccC
Confidence 88877775
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.08 E-value=6e-05 Score=76.72 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=65.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
+.+|||.|||+|+.+..++.. ...++++|.|+.|++.++.+++..+ ++.++.. +.. .++...++||+|
T Consensus 183 g~~vLDp~cGtG~~lieaa~~----~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~-----D~~-~l~~~~~~~D~I 252 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLM----GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRG-----DAT-KLPLSSESVDAI 252 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHh----CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEec-----chh-cCCcccCCCCEE
Confidence 468999999999988776542 3589999999999999998876533 2122221 222 233335689999
Q ss_pred EecccccC--C-C--CH-HHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 171 IASYVLGE--V-P--SL-QDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 171 ias~vL~e--l-~--~~-~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
++.--.+. . . .. .....++..+.+. +||.++++-+..
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 99622111 1 0 01 1112334333332 699999987754
|
This family is found exclusively in the Archaea. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.6e-06 Score=84.19 Aligned_cols=122 Identities=14% Similarity=0.239 Sum_probs=69.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC----C-CC---Cc----eecchhHhhhhhc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP----K-DL---PL----IHSYNSIQALNKD 159 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~----~-~~---~~----i~~~~~~~~l~~~ 159 (462)
.+.+|||+|||-|.-+.-.... ....|+|+|+|...++.|++..+.. . .. .+ +........+...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~---~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA---KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred CCCeEEEecCCCchhHHHHHhc---CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence 4579999999966434222221 4679999999999999999888211 0 00 01 1111111122222
Q ss_pred cCCCCCcccEEEecccccCCCCHHHH-HHHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHH
Q 012511 160 ISKSEREHDLVIASYVLGEVPSLQDR-ITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRS 219 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~~~r-~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~ 219 (462)
++....+||+|-|.++||+.-..++. ..+++++-+. +||++|.. +|.+..++..+|+
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT---~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT---TPDSDEIVKRLRE 198 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE---EE-HHHHHCCHHC
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE---ecCHHHHHHHHHh
Confidence 33234699999999999998654444 4467777665 79999973 4566655444443
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.9e-05 Score=81.28 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=56.2
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQAL 156 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l 156 (462)
.++..+...+......+|||+|||+|+.+.+++.. ..+++++|.|+.|++.|++.++.. .++.++... ....
T Consensus 284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~----~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d--~~~~ 357 (443)
T PRK13168 284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ----AAEVVGVEGVEAMVERARENARRNGLDNVTFYHAN--LEED 357 (443)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeC--hHHh
Confidence 34444444443334579999999999998888764 358999999999999999887533 233333221 1111
Q ss_pred hhccCCCCCcccEEEec
Q 012511 157 NKDISKSEREHDLVIAS 173 (462)
Q Consensus 157 ~~~l~~~~~~fDLVias 173 (462)
....+....+||+|++.
T Consensus 358 l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 358 FTDQPWALGGFDKVLLD 374 (443)
T ss_pred hhhhhhhcCCCCEEEEC
Confidence 01111224579999875
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.1e-05 Score=77.47 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceec
Q 012511 72 AVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHS 149 (462)
Q Consensus 72 ~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~ 149 (462)
.+......++..+...+....+.+|||+|||+|..+..++. ...+|+++|.|+.|++.|++.++..+ ++.++..
T Consensus 153 ~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~----~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~ 228 (315)
T PRK03522 153 TNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCAT----PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQAL 228 (315)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEc
Confidence 33333333444333333223458999999999999888876 24689999999999999998875432 2323322
Q ss_pred chhHhhhhhccCCCCCcccEEEec
Q 012511 150 YNSIQALNKDISKSEREHDLVIAS 173 (462)
Q Consensus 150 ~~~~~~l~~~l~~~~~~fDLVias 173 (462)
+.........++||+|++.
T Consensus 229 -----D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 229 -----DSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred -----CHHHHHHhcCCCCeEEEEC
Confidence 1211111123469999977
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-05 Score=75.89 Aligned_cols=109 Identities=23% Similarity=0.397 Sum_probs=72.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecc--hhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSY--NSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~--~~~~~l~~~l~~~~~~fDLV 170 (462)
..+.||.|||.|.++-.+.- + ...+|..||+++.+++.|++.+.... +.+... ..+|++ .| ...+||+|
T Consensus 56 ~~~alDcGAGIGRVTk~lLl--~-~f~~VDlVEp~~~Fl~~a~~~l~~~~--~~v~~~~~~gLQ~f---~P-~~~~YDlI 126 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLL--P-VFDEVDLVEPVEKFLEQAKEYLGKDN--PRVGEFYCVGLQDF---TP-EEGKYDLI 126 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCC--C-C-SEEEEEES-HHHHHHHHHHTCCGG--CCEEEEEES-GGG--------TT-EEEE
T ss_pred cceEEecccccchhHHHHHH--H-hcCEeEEeccCHHHHHHHHHHhcccC--CCcceEEecCHhhc---cC-CCCcEeEE
Confidence 47999999999998865432 2 35689999999999999998765511 111111 112332 12 35799999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCch
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf 211 (462)
.+.++|.||+ +++..+++++.-+. ++|.+||=|.-+..|+
T Consensus 127 W~QW~lghLT-D~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~ 168 (218)
T PF05891_consen 127 WIQWCLGHLT-DEDLVAFLKRCKQALKPNGVIVVKENVSSSGF 168 (218)
T ss_dssp EEES-GGGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE
T ss_pred EehHhhccCC-HHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC
Confidence 9999999997 77777777766543 7999999998888776
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.3e-05 Score=73.72 Aligned_cols=108 Identities=13% Similarity=0.225 Sum_probs=66.1
Q ss_pred CCeEEEECCchhHHHHHHHHhCCC-CccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPR-SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~-~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
+.+|||+|||+|.++.+++...+. ...++++||+++.|++.|+.++.+ ..++.. ++.. .. ...+||+||
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~---~~~~~~-----D~~~-~~-~~~~FDlII 119 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE---ATWINA-----DALT-TE-FDTLFDMAI 119 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC---CEEEEc-----chhc-cc-ccCCccEEE
Confidence 469999999999999988775431 235899999999999999976532 333332 2211 11 245899999
Q ss_pred ecccccCCCCH---------HHHHHHHHHHHhc-CCCEEEEEecCCCCchH
Q 012511 172 ASYVLGEVPSL---------QDRITIVRQLWDL-TRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 172 as~vL~el~~~---------~~r~~~i~~Lw~~-~gG~LVlVEpGtp~Gf~ 212 (462)
++==...+... .--..++...++. +.|.+ |=|.+..||.
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~--ILP~~~~~~~ 168 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF--IIPQMSANFR 168 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE--EeCcccccCc
Confidence 97433333211 1112234433333 45666 4466666663
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.6e-05 Score=72.96 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=67.1
Q ss_pred CeEEEECCchhHHHHHHHHh-CCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 94 AKVLDFGAGTGSAFWALREV-WPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~-~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
.+|||+|||.|.++..+++. |+ .+.++||.|+..+++|+.+++.......+. +...++... ....++||+|+-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~---~~L~GvDYs~~AV~LA~niAe~~~~~n~I~--f~q~DI~~~-~~~~~qfdlvlD 142 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQ---SKLTGVDYSEKAVELAQNIAERDGFSNEIR--FQQLDITDP-DFLSGQFDLVLD 142 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCC---CCccccccCHHHHHHHHHHHHhcCCCccee--EEEeeccCC-cccccceeEEee
Confidence 39999999999999887763 43 248999999999999999987643221121 111223221 234678999875
Q ss_pred cccccCCC----CHHHH----HHHHHHHHhcCCCEEEEE
Q 012511 173 SYVLGEVP----SLQDR----ITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 173 s~vL~el~----~~~~r----~~~i~~Lw~~~gG~LVlV 203 (462)
--++.-+. .+..| +..++++++ ++|.+||.
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~-~~gifvIt 180 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLS-PGGIFVIT 180 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccC-CCcEEEEE
Confidence 44443221 12233 457788887 79999983
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.8e-05 Score=75.64 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=65.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCC-CCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISK-SEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~-~~~~f 167 (462)
.|.+||++|||.|..+..+.+. + ...++++||+++.+++.|++.+.... +-+.+... ..+....+.. ..++|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi--~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-S-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLH--IGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-C-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEE--EChHHHHHhhccCCCC
Confidence 4789999999999988888764 3 36799999999999999999775321 11222110 0111111111 24689
Q ss_pred cEEEecccccCCCC----HHHHHHHHHHHHhcCCCEEEEE
Q 012511 168 DLVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 168 DLVias~vL~el~~----~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
|+||+-..-...+. ..+-.+.+.++++ +||.+++-
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~-pgGvlv~q 205 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALR-PGGVVCTQ 205 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEEC
Confidence 99998543222221 1223445555554 79998764
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.3e-05 Score=71.49 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=66.2
Q ss_pred CCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCc
Q 012511 88 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSERE 166 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~ 166 (462)
.+++.+.+|||+|||||.++.+++- ++ -.+|+|||+.+++++.++.+..... ++.++. .+ +.....+
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~-lG--a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~-----~d----v~~~~~~ 108 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAAL-LG--ASRVLAVDIDPEALEIARANAEELLGDVEFVV-----AD----VSDFRGK 108 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHh-cC--CcEEEEEecCHHHHHHHHHHHHhhCCceEEEE-----cc----hhhcCCc
Confidence 3677788999999999999888775 33 4689999999999999999887532 222221 11 2224567
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 167 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+|.||.+--+.-...-.+ ..++...++. ..++.-|-
T Consensus 109 ~dtvimNPPFG~~~rhaD-r~Fl~~Ale~-s~vVYsiH 144 (198)
T COG2263 109 FDTVIMNPPFGSQRRHAD-RPFLLKALEI-SDVVYSIH 144 (198)
T ss_pred cceEEECCCCccccccCC-HHHHHHHHHh-hheEEEee
Confidence 888887754443321222 2355555654 44444443
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00015 Score=71.98 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=66.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhcc-CCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDI-SKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l-~~~~~~f 167 (462)
++++|||+|+|+|..+..++...++ ..+++.+|.++++.+.|++.++..+- +.++... -...+.... ....++|
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~-~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~Gd-A~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPE-SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGL-AAESLKSMIQNGEGSSY 195 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC-HHHHHHHHHhcccCCCC
Confidence 6789999999999888777777764 45799999999999999999876532 2222221 111122111 1123689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCc
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 210 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~G 210 (462)
|+|+.-.- ...-..++..++++ +||.+| ++.---.|
T Consensus 196 D~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV-~DNvL~~G 233 (278)
T PLN02476 196 DFAFVDAD------KRMYQDYFELLLQLVRVGGVIV-MDNVLWHG 233 (278)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCcEEE-EecCccCC
Confidence 99987532 22223333333332 577655 45433333
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.6e-05 Score=79.38 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=68.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..+++..+. ..+++++|.+++|++.+++.++..+ ++..+... ...+....+...++||.
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~-~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D--~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGD-QGEIWAVDRSASRLKKLQENAQRLGLKSIKILAAD--SRNLLELKPQWRGYFDR 328 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCC--hhhcccccccccccCCE
Confidence 4579999999999988888876542 4589999999999999998886543 22222211 11111000122458999
Q ss_pred EEec------ccccCCCCH------HH-------HHHHHHHHHhc--CCCEEEEEe
Q 012511 170 VIAS------YVLGEVPSL------QD-------RITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 170 Vias------~vL~el~~~------~~-------r~~~i~~Lw~~--~gG~LVlVE 204 (462)
|++. .++..-++. .. ..+++.+.++. +||.||...
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9962 234333321 11 23456666664 799998754
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.6e-05 Score=78.73 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=69.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC--CCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK--SEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~--~~~~fDL 169 (462)
++.+|||+|||||..+..+++..+ ..+++++|.|+.|++.+++.++..+ +. +.......+.. ..+. ...+||.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g-~~-~~v~~~~~d~~-~~~~~~~~~~fD~ 312 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLG-LT-IKAETKDGDGR-GPSQWAENEQFDR 312 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeccccc-cccccccccccCE
Confidence 457999999999998888888765 3589999999999999999887543 21 11000001111 1111 3467999
Q ss_pred EEe------cccccCCCCH------H-------HHHHHHHHHHhc--CCCEEEEEec
Q 012511 170 VIA------SYVLGEVPSL------Q-------DRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 170 Via------s~vL~el~~~------~-------~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
|++ +.++...++. + ....++...++. +||.||...-
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 985 2345554431 1 123566666653 7999998764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.6e-05 Score=75.68 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=57.5
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 158 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~ 158 (462)
.++..+...+......+|||+|||+|+.+..+.+. ..+++++|.++.|++.+++.+....++.++.. +..
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~----~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~-----D~~- 85 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR----AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEG-----DAL- 85 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHhccCCCEEEEEe-----ccc-
Confidence 34444554444344579999999999999988874 34899999999999999987764333433332 121
Q ss_pred ccCCCCCcccEEEecccc
Q 012511 159 DISKSEREHDLVIASYVL 176 (462)
Q Consensus 159 ~l~~~~~~fDLVias~vL 176 (462)
.++ ...||+||++.-.
T Consensus 86 ~~~--~~~~d~Vv~NlPy 101 (258)
T PRK14896 86 KVD--LPEFNKVVSNLPY 101 (258)
T ss_pred cCC--chhceEEEEcCCc
Confidence 122 2357888876443
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.1e-05 Score=71.33 Aligned_cols=102 Identities=12% Similarity=0.021 Sum_probs=69.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--------------CCCCceecchhHhhhh
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--------------KDLPLIHSYNSIQALN 157 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--------------~~~~~i~~~~~~~~l~ 157 (462)
++.+||+.|||.|.-+..+++ ...+|++||.|+..++.+.+-..-. ..+.++. .++-
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~----~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~-----gD~f 113 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS----KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYV-----ADIF 113 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh----CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEE-----ccCc
Confidence 357999999999987766665 3568999999999999875521100 0111111 1221
Q ss_pred hccC---CCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEe
Q 012511 158 KDIS---KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 158 ~~l~---~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVE 204 (462)
. ++ ...++||+|.-..+|..|+ ++.|...++.|.+. +||.++++-
T Consensus 114 ~-l~~~~~~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 114 N-LPKIANNLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred C-CCccccccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 1 11 1235899999999999997 88888777777663 788887764
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=79.62 Aligned_cols=107 Identities=21% Similarity=0.341 Sum_probs=64.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh--hcCCC----CCCceecchhHhhhhhccCCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL--MQGPK----DLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l--l~~~~----~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
+|++|||+|||+|..+..+.+ .+ ...++++||++++|++.+++. +.... +.|.++.. ..|....+....+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi--~~Da~~~l~~~~~ 372 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVV--NDDAFNWLRKLAE 372 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEE--EChHHHHHHhCCC
Confidence 578999999999998887776 33 347999999999999999983 22211 11222110 0111111222346
Q ss_pred cccEEEecccccCCCCH-----HHHHHHHHHHHhcCCCEEEEE
Q 012511 166 EHDLVIASYVLGEVPSL-----QDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 166 ~fDLVias~vL~el~~~-----~~r~~~i~~Lw~~~gG~LVlV 203 (462)
+||+||+...-...+.. .+-.+.++++++ +||.+++-
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~-pgG~lv~~ 414 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA-PDGLLVVQ 414 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcC-CCeEEEEe
Confidence 89999997543322211 123445555655 68987763
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=72.27 Aligned_cols=129 Identities=21% Similarity=0.199 Sum_probs=81.1
Q ss_pred chhHHHHHH-HHHHHHHHCCCCCCCeEEEECCchh----HHHHHHHHhCCC---CccEEEEEeCCHHHHHHHHHhhcC--
Q 012511 71 PAVYSACYR-VLCEVRRRLPGFSPAKVLDFGAGTG----SAFWALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQG-- 140 (462)
Q Consensus 71 p~~Ya~~~~-vL~eL~~rlp~~~p~rVLDvG~G~G----~~~~al~~~~~~---~~~~v~~VD~S~~ml~~Ak~ll~~-- 140 (462)
|..+..+.. ++.+|.+.... ++.+|.-+||++| +.+.++.+.++. ...++++.|+|..+++.|+.-.=.
T Consensus 75 ~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~ 153 (268)
T COG1352 75 PEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSR 153 (268)
T ss_pred cHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChh
Confidence 344444433 45555544333 6789999999999 456667787763 357999999999999999753311
Q ss_pred -C-CCCCc-------eecc-------hh--------HhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc-
Q 012511 141 -P-KDLPL-------IHSY-------NS--------IQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL- 195 (462)
Q Consensus 141 -~-~~~~~-------i~~~-------~~--------~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~- 195 (462)
. .+++. .... .. ..++.... ...+.||+|+|-|||-.+. .+.+..++..+...
T Consensus 154 ~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~-~~~~~fD~IfCRNVLIYFd-~~~q~~il~~f~~~L 231 (268)
T COG1352 154 ELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDS-PFLGKFDLIFCRNVLIYFD-EETQERILRRFADSL 231 (268)
T ss_pred HhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCc-cccCCCCEEEEcceEEeeC-HHHHHHHHHHHHHHh
Confidence 0 11110 0000 00 01111111 1456799999999999995 66666677776664
Q ss_pred -CCCEEEE
Q 012511 196 -TRDVLVL 202 (462)
Q Consensus 196 -~gG~LVl 202 (462)
+||+|+|
T Consensus 232 ~~gG~Lfl 239 (268)
T COG1352 232 KPGGLLFL 239 (268)
T ss_pred CCCCEEEE
Confidence 7999998
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0001 Score=72.67 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=41.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
.+.+|||+|||+|..+..+++..++ ...|+++|.|+.|++.+++.++..+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~-~g~v~a~D~~~~~l~~~~~n~~~~g 120 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKN-EGAIVANEFSKSRTKVLIANINRCG 120 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCC-CCEEEEEcCCHHHHHHHHHHHHHcC
Confidence 3479999999999999888887653 3589999999999999998886543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.2e-05 Score=78.17 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=41.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~ 141 (462)
.+.+|||+|||||.-+.++++..+. ..+++++|.|+.|++.+++.++..
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~Dis~~rl~~~~~n~~r~ 285 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKD-QGKILAVDISREKIQLVEKHAKRL 285 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence 3579999999999988888887652 468999999999999999988754
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.88 E-value=2e-05 Score=75.55 Aligned_cols=129 Identities=19% Similarity=0.086 Sum_probs=74.8
Q ss_pred CchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC---CCCCCc
Q 012511 70 MPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG---PKDLPL 146 (462)
Q Consensus 70 ~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~---~~~~~~ 146 (462)
.|+.-......|.++...++...+.+||..|||.|.-+..+++ ...+|+|||+|+..++.+.+-... ......
T Consensus 15 ~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~----~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~ 90 (218)
T PF05724_consen 15 TPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAE----QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGG 90 (218)
T ss_dssp -TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHH----TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTT
T ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHH----CCCeEEEEecCHHHHHHHHHHhccCCCcccccc
Confidence 3444444444454544444444457999999999977766666 356999999999999987332111 111111
Q ss_pred eec--c----hhHhhhhhccC-CCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCE--EEEEe
Q 012511 147 IHS--Y----NSIQALNKDIS-KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDV--LVLVE 204 (462)
Q Consensus 147 i~~--~----~~~~~l~~~l~-~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~--LVlVE 204 (462)
... . ....++-. ++ ...++||+|.=.-+|.-|+ ++.|.+.+++|.+. +||. |+.++
T Consensus 91 ~~~~~~~~i~~~~gDfF~-l~~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 91 FKRYQAGRITIYCGDFFE-LPPEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp EEEETTSSEEEEES-TTT-GGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred eeeecCCceEEEEccccc-CChhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 100 0 00011111 11 1235799999999999997 88888877777765 6888 44444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00022 Score=68.22 Aligned_cols=129 Identities=13% Similarity=0.171 Sum_probs=76.8
Q ss_pred CchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceec
Q 012511 70 MPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS 149 (462)
Q Consensus 70 ~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~ 149 (462)
+|......-..|.-|.+.. ++++||++|.+.|..+..++...+. ..+++.+|.++++.+.|+++++..+-...+..
T Consensus 40 ~pi~~~e~g~~L~~L~~~~---~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~ 115 (219)
T COG4122 40 VPIIDPETGALLRLLARLS---GPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIEL 115 (219)
T ss_pred CCCCChhHHHHHHHHHHhc---CCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEE
Confidence 4444444555555555432 5799999999999776666666764 56999999999999999999987653222211
Q ss_pred c---hhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 150 Y---NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 150 ~---~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
. .....+.. ...++||+|+.-.-=... ..-.+.+..|++ +||.+| ++.--..|
T Consensus 116 ~~~gdal~~l~~---~~~~~fDliFIDadK~~y---p~~le~~~~lLr-~GGliv-~DNvl~~G 171 (219)
T COG4122 116 LLGGDALDVLSR---LLDGSFDLVFIDADKADY---PEYLERALPLLR-PGGLIV-ADNVLFGG 171 (219)
T ss_pred EecCcHHHHHHh---ccCCCccEEEEeCChhhC---HHHHHHHHHHhC-CCcEEE-EeecccCC
Confidence 1 11122221 246799999875421111 122333344443 455554 55444333
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00016 Score=76.28 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=41.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~ 141 (462)
++.+|||+|||+|..+..+++..+. .+|+++|.|+.|++.+++.++..
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~--~~v~a~D~s~~~l~~~~~n~~~~ 291 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ--AQVVALDIDAQRLERVRENLQRL 291 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHc
Confidence 4579999999999988888876642 58999999999999999888654
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.3e-05 Score=77.56 Aligned_cols=121 Identities=14% Similarity=0.069 Sum_probs=68.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
++.+|||+|||+|.++.+++. + ...++++||.|+.+++.|++.++..+ ++.++... ..++...+.....+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~--~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D--~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALM--G-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDD--VFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHh--C-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEcc--HHHHHHHHHhcCCCC
Confidence 357999999999998776553 2 24589999999999999999876432 12223221 111111111124579
Q ss_pred cEEEecccccCCCCHHHH----------HHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 168 DLVIASYVLGEVPSLQDR----------ITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 168 DLVias~vL~el~~~~~r----------~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
|+||+.--- ...+.... .....++++ +||.|++..-....+. ...++++.
T Consensus 295 DlVilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~~~~---~~f~~~v~ 354 (396)
T PRK15128 295 DVIVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGLMTS---DLFQKIIA 354 (396)
T ss_pred CEEEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCcCCH---HHHHHHHH
Confidence 999976211 11111111 112334443 6999998654333332 33355544
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=70.97 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=58.9
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCC
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.+...+|||+|||||.++..+++. ...+|++||.|+.|+.. .+.++.. ....+. +..+.++ ...-.
T Consensus 73 ~~~~~~vlDiG~gtG~~t~~l~~~---ga~~v~avD~~~~~l~~--~l~~~~~v~~~~~~ni~-~~~~~~~----~~d~~ 142 (228)
T TIGR00478 73 DVKNKIVLDVGSSTGGFTDCALQK---GAKEVYGVDVGYNQLAE--KLRQDERVKVLERTNIR-YVTPADI----FPDFA 142 (228)
T ss_pred CCCCCEEEEcccCCCHHHHHHHHc---CCCEEEEEeCCHHHHHH--HHhcCCCeeEeecCCcc-cCCHhHc----CCCce
Confidence 356679999999999999988873 24689999999988865 2222211 000111 0111121 11224
Q ss_pred cccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 166 EHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 166 ~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
.+|++++|.++. + .-+.++++. +-.++||-|--
T Consensus 143 ~~DvsfiS~~~~-l-------~~i~~~l~~-~~~~~L~KPqF 175 (228)
T TIGR00478 143 TFDVSFISLISI-L-------PELDLLLNP-NDLTLLFKPQF 175 (228)
T ss_pred eeeEEEeehHhH-H-------HHHHHHhCc-CeEEEEcChHh
Confidence 789888887762 2 245556654 55556765543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.5e-05 Score=73.08 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchh
Q 012511 76 ACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNS 152 (462)
Q Consensus 76 ~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~ 152 (462)
.+..|++++.++- -+.+..|||+|||+|..+..+...++ ...+++||.|..++.+|.++++... .+..++....
T Consensus 133 ~V~~Vid~~~~~~-~~~~~~ildlgtGSGaIslsll~~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me 209 (328)
T KOG2904|consen 133 WVEAVIDALNNSE-HSKHTHILDLGTGSGAISLSLLHGLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME 209 (328)
T ss_pred HHHHHHHHHhhhh-hcccceEEEecCCccHHHHHHHhcCC--CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc
Confidence 4556666665542 34567899999999999999999887 4689999999999999999886543 1222221000
Q ss_pred HhhhhhccCCCCCcccEEEec
Q 012511 153 IQALNKDISKSEREHDLVIAS 173 (462)
Q Consensus 153 ~~~l~~~l~~~~~~fDLVias 173 (462)
.+.....+...+++|++|++
T Consensus 210 -~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 210 -SDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred -cccccccccccCceeEEecC
Confidence 01111112345789999986
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00018 Score=74.64 Aligned_cols=128 Identities=10% Similarity=0.039 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchh
Q 012511 75 SACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNS 152 (462)
Q Consensus 75 a~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~ 152 (462)
.....++..+...+....+.+|||+|||+|+.+.+++. ...++++||.|+.+++.|+..++..+ ++.++..
T Consensus 216 ~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~----~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~--- 288 (374)
T TIGR02085 216 KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAG----PDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAAL--- 288 (374)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhh----cCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEEC---
Confidence 33333444444433222347999999999999888775 23589999999999999998875432 2223322
Q ss_pred HhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 153 IQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 153 ~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
++...+.....+||+||+.=--..+ . ..++..+.+..-+.+|.|+- .|. .-|||.-+
T Consensus 289 --d~~~~~~~~~~~~D~vi~DPPr~G~--~---~~~l~~l~~~~p~~ivyvsc-~p~-----TlaRDl~~ 345 (374)
T TIGR02085 289 --DSAKFATAQMSAPELVLVNPPRRGI--G---KELCDYLSQMAPKFILYSSC-NAQ-----TMAKDIAE 345 (374)
T ss_pred --CHHHHHHhcCCCCCEEEECCCCCCC--c---HHHHHHHHhcCCCeEEEEEe-CHH-----HHHHHHHH
Confidence 1211111112459999886322222 1 12344444432356666664 232 34577643
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00045 Score=68.13 Aligned_cols=110 Identities=17% Similarity=0.164 Sum_probs=77.7
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CC-CceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DL-PLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~-~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
..|.+|||+.||+|..++-+.+..+....++.+.|.|+..++.++.+++..+ ++ .+...+. .....+.......
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dA---fd~~~l~~l~p~P 210 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDA---FDRDSLAALDPAP 210 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCC---CCHhHhhccCCCC
Confidence 4689999999999998887777777556799999999999999999987533 33 2222110 0011122234467
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEE
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 203 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlV 203 (462)
+|+|+|-+..-+++.+.....+..|... |||+||.-
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 9999999888888766555556666553 79999983
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00011 Score=72.03 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=45.2
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL 144 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~ 144 (462)
++..+...++...+.+|||+|||+|..+..+++.. ..++++|.++.|++.++..+....++
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~----~~v~~iE~d~~~~~~l~~~~~~~~~v 77 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA----KKVTAIEIDPRLAEILRKLLSLYERL 77 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC----CcEEEEECCHHHHHHHHHHhCcCCcE
Confidence 34444444433356799999999999999888754 35999999999999998876543333
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00025 Score=67.15 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=61.1
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+|||+|||+|..+..+.... ..++++||.++.+++.++..++... ++.++.. ++...++....+||+|
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~---a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~-----D~~~~l~~~~~~fDlV 125 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY---AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNT-----NALSFLAQPGTPHNVV 125 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC---CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEc-----hHHHHHhhcCCCceEE
Confidence 4699999999999887544322 3589999999999999998876532 2222222 1211122123469999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhc---CCCEEEEEecCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGT 207 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~---~gG~LVlVEpGt 207 (462)
++.=-... .-..+ ++..|.+. ..+.+|+||...
T Consensus 126 ~~DPPy~~-g~~~~---~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 126 FVDPPFRK-GLLEE---TINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EECCCCCC-ChHHH---HHHHHHHCCCcCCCcEEEEEecC
Confidence 98643211 00222 33333321 235677788654
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.9e-05 Score=73.48 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=38.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
.+.+|||+|||+|..+..+++.. .+++++|.++.|++.+++.+..
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~----~~v~avE~d~~~~~~~~~~~~~ 86 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA----AKVTAVEIDRDLAPILAETFAE 86 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC----CcEEEEECCHHHHHHHHHhhcc
Confidence 45799999999999998888752 3799999999999999887643
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=6e-05 Score=84.29 Aligned_cols=73 Identities=15% Similarity=0.054 Sum_probs=49.9
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCccc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
+.+|||+|||+|.++.+++.. ...+|++||.|+.+++.|++.++..+ .+.++... ..+.+.....+||
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~---Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D-----~~~~l~~~~~~fD 610 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG---GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQAD-----CLAWLKEAREQFD 610 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEcc-----HHHHHHHcCCCcC
Confidence 579999999999988887762 23479999999999999999886432 12222221 1111111145899
Q ss_pred EEEec
Q 012511 169 LVIAS 173 (462)
Q Consensus 169 LVias 173 (462)
+||+.
T Consensus 611 lIilD 615 (702)
T PRK11783 611 LIFID 615 (702)
T ss_pred EEEEC
Confidence 99984
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00034 Score=73.88 Aligned_cols=92 Identities=11% Similarity=0.024 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHh
Q 012511 77 CYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQ 154 (462)
Q Consensus 77 ~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~ 154 (462)
...++..+...+......+|||+|||+|+.+..++.. ..+|+++|.|+.|++.|++.++.. .++.++.... .
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~----~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~--~ 350 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ----AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTL--E 350 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh----CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCH--H
Confidence 3334444443332223479999999999999888863 358999999999999999887542 2333333221 1
Q ss_pred hhhhccCCCCCcccEEEecc
Q 012511 155 ALNKDISKSEREHDLVIASY 174 (462)
Q Consensus 155 ~l~~~l~~~~~~fDLVias~ 174 (462)
.+...+.....+||+|++.-
T Consensus 351 ~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 351 TVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred HHHHHHHhcCCCCCEEEECc
Confidence 11111112235699999643
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00011 Score=74.26 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=52.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCC-ceecc--hhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP-LIHSY--NSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~-~i~~~--~~~~~l~~~l~~~~~~fD 168 (462)
...+|||||||+|.....+....+ ..+++++|+++.+++.|+..++...++. .+... ....++...+......||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~--~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY--GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 457999999999866555444333 3579999999999999999887642121 11110 011112111212356899
Q ss_pred EEEeccccc
Q 012511 169 LVIASYVLG 177 (462)
Q Consensus 169 LVias~vL~ 177 (462)
+|||+==.+
T Consensus 192 livcNPPf~ 200 (321)
T PRK11727 192 ATLCNPPFH 200 (321)
T ss_pred EEEeCCCCc
Confidence 999985443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00017 Score=76.44 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=65.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+|||+|..+..+++..+. ..+++++|.|+.|++.+++.++..+ +..+... ..+.. .+. ...+||+|+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g-~~~v~~~--~~Da~-~~~-~~~~fD~Vl 323 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQN-RGQITAVDRYPQKLEKIRSHASALG-ITIIETI--EGDAR-SFS-PEEQPDAIL 323 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhC-CCeEEEE--eCccc-ccc-cCCCCCEEE
Confidence 4479999999999988777765542 3589999999999999998886543 1111110 01111 121 345799999
Q ss_pred ec------ccccC------CCCHHH-------HHHHHHHHHhc--CCCEEEEEe
Q 012511 172 AS------YVLGE------VPSLQD-------RITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 172 as------~vL~e------l~~~~~-------r~~~i~~Lw~~--~gG~LVlVE 204 (462)
+- .++.. ..+.+. ...++.++++. +||.||+..
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 52 11111 111221 22456666554 799999855
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00017 Score=76.40 Aligned_cols=76 Identities=14% Similarity=0.075 Sum_probs=51.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+..+++..+ ...+++++|+|+.+++.+++.++..+ ++.++.. +.........++||+
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~-~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~-----D~~~~~~~~~~~fD~ 323 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLK-NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKAL-----DARKVHEKFAEKFDK 323 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC-----CcccccchhcccCCE
Confidence 347999999999999888887663 23589999999999999998886543 2222221 121111111267999
Q ss_pred EEec
Q 012511 170 VIAS 173 (462)
Q Consensus 170 Vias 173 (462)
|++.
T Consensus 324 Vl~D 327 (444)
T PRK14902 324 ILVD 327 (444)
T ss_pred EEEc
Confidence 9863
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00029 Score=67.02 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=68.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccC-CCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDIS-KSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~-~~~~~f 167 (462)
+|++||++|+++|..++.++...++ ..+++.+|.++++.+.|++.++..+. +.++... ....+..-.+ ...++|
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~-~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gd-a~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPE-DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGD-ALEVLPELANDGEEGQF 122 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTT-TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES--HHHHHHHHHHTTTTTSE
T ss_pred CCceEEEeccccccHHHHHHHhhcc-cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEec-cHhhHHHHHhccCCCce
Confidence 4789999999999988888888874 57999999999999999998875432 2222221 1111221111 124689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
|+|+.-.-=. +...-.+.+..+++ .|-+|+++.-...|
T Consensus 123 D~VFiDa~K~---~y~~y~~~~~~ll~--~ggvii~DN~l~~G 160 (205)
T PF01596_consen 123 DFVFIDADKR---NYLEYFEKALPLLR--PGGVIIADNVLWRG 160 (205)
T ss_dssp EEEEEESTGG---GHHHHHHHHHHHEE--EEEEEEEETTTGGG
T ss_pred eEEEEccccc---chhhHHHHHhhhcc--CCeEEEEccccccc
Confidence 9998754211 11122233334444 35566667655444
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.9e-05 Score=73.61 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=68.5
Q ss_pred CCCeEEEECCchhHH----HHHHHHhCCC--CccEEEEEeCCHHHHHHHHHhhcC---CCCCC-----------------
Q 012511 92 SPAKVLDFGAGTGSA----FWALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQG---PKDLP----------------- 145 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~----~~al~~~~~~--~~~~v~~VD~S~~ml~~Ak~ll~~---~~~~~----------------- 145 (462)
.+.+|+..||++|.- +..+.+.++. ...+|+|+|+|+.+++.|+.-.=. ..++|
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 357999999999943 3334454332 235899999999999999874311 00111
Q ss_pred --ceec------chhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 146 --LIHS------YNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 146 --~i~~------~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
.+.. .+...++........+.||+|+|-|+|.++. .+.+..+++++.+. |||+|++
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~-~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFD-KTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 0000 0001122110001247899999999999995 67777777777664 8998876
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.5e-05 Score=71.78 Aligned_cols=114 Identities=17% Similarity=0.268 Sum_probs=83.4
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEec
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 173 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias 173 (462)
..++|+|||-|.....+.. +.+++++.+|.|-.|++.++.-- + +.+... + ... ....+++.++++||||+|
T Consensus 74 p~a~diGcs~G~v~rhl~~---e~vekli~~DtS~~M~~s~~~~q-d-p~i~~~--~-~v~-DEE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRG---EGVEKLIMMDTSYDMIKSCRDAQ-D-PSIETS--Y-FVG-DEEFLDFKENSVDLIISS 144 (325)
T ss_pred cceeecccchhhhhHHHHh---cchhheeeeecchHHHHHhhccC-C-CceEEE--E-Eec-chhcccccccchhhhhhh
Confidence 4799999999998877665 36889999999999998876421 1 122111 1 111 123466778999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 174 YVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 174 ~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
..||+..+...-+.-++..++ |+|.+| ++--|...+-++|-.+
T Consensus 145 lslHW~NdLPg~m~~ck~~lK-PDg~Fi----asmlggdTLyELR~sl 187 (325)
T KOG2940|consen 145 LSLHWTNDLPGSMIQCKLALK-PDGLFI----ASMLGGDTLYELRCSL 187 (325)
T ss_pred hhhhhhccCchHHHHHHHhcC-CCccch----hHHhccccHHHHHHHh
Confidence 999998876666666777765 788877 3667778888888765
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00039 Score=67.34 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=79.1
Q ss_pred HHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCC
Q 012511 85 RRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 85 ~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
..+++-..+.+|||.|.|+|.++.+++...+ ...+++..|.-+++.+.|+++++.......+.. ...++...+ ..
T Consensus 87 ~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg-~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~--~~~Dv~~~~--~~ 161 (256)
T COG2519 87 VARLGISPGSRVLEAGTGSGALTAYLARAVG-PEGHVTTYEIREDFAKTARENLSEFGLGDRVTL--KLGDVREGI--DE 161 (256)
T ss_pred HHHcCCCCCCEEEEcccCchHHHHHHHHhhC-CCceEEEEEecHHHHHHHHHHHHHhccccceEE--Eeccccccc--cc
Confidence 3344445668999999999999988887665 357999999999999999999876432111211 112333322 23
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
..||.|+ -.++++-+.++-+..+++ +||.+++.-|-
T Consensus 162 ~~vDav~-----LDmp~PW~~le~~~~~Lk-pgg~~~~y~P~ 197 (256)
T COG2519 162 EDVDAVF-----LDLPDPWNVLEHVSDALK-PGGVVVVYSPT 197 (256)
T ss_pred cccCEEE-----EcCCChHHHHHHHHHHhC-CCcEEEEEcCC
Confidence 4889887 467788887777777776 69999998775
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=72.26 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=42.5
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+..+..........+|||+|||+|..+..+.+. ..+++++|+++.|++.+++.+..
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~----~~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL----AKKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh----CCcEEEEECCHHHHHHHHHHHHh
Confidence 333433333334579999999999999888763 35799999999999999987754
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00028 Score=70.20 Aligned_cols=122 Identities=14% Similarity=0.193 Sum_probs=78.0
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC-----C---CceecchhHhhhhhccCCCC
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-----L---PLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~-----~---~~i~~~~~~~~l~~~l~~~~ 164 (462)
...+||+|||-|.-+.-.-. ..+..++|+|++.-.++.|+...++..+ + .++...-+...+...++..+
T Consensus 118 ~~~~~~LgCGKGGDLlKw~k---AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDK---AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccceeccCCcccHhHhhh---hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 36799999997754432111 1467899999999999999888764321 1 11211111122333344344
Q ss_pred CcccEEEecccccCCCC-HHHHHHHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHHH
Q 012511 165 REHDLVIASYVLGEVPS-LQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSH 220 (462)
Q Consensus 165 ~~fDLVias~vL~el~~-~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~~ 220 (462)
.+||||-|.+++|.--. .+....++++..+. |||++|- ..|..+.+|.++|..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg---TiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG---TIPDSDVIIKRLRAG 250 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE---ecCcHHHHHHHHHhc
Confidence 45999999999997643 33334455555553 8999995 248888888888876
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.67 E-value=9.6e-05 Score=85.10 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=41.8
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+++.+|||+|||+|..+.+++..++. .+++++|+|+.+++.|+.++..
T Consensus 117 ~~~~~VLDlG~GSG~Iai~La~~~~~--~~v~avDis~~Al~~A~~Na~~ 164 (1082)
T PLN02672 117 FRDKTVAELGCGNGWISIAIAEKWLP--SKVYGLDINPRAVKVAWINLYL 164 (1082)
T ss_pred CCCCEEEEEecchHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHH
Confidence 45679999999999999999988763 4899999999999999988753
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00038 Score=61.48 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=63.3
Q ss_pred HHHHCCCCCCCeEEEECCchhH-HHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC
Q 012511 84 VRRRLPGFSPAKVLDFGAGTGS-AFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 162 (462)
Q Consensus 84 L~~rlp~~~p~rVLDvG~G~G~-~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~ 162 (462)
|...++..++.+|||+|||.|. .+..+.+ ...+|+++|.|+..++.++...- ..+.. ++-..-..
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA~~L~~----~G~~ViaIDi~~~aV~~a~~~~~-----~~v~d-----Dlf~p~~~ 73 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVAKKLKE----SGFDVIVIDINEKAVEKAKKLGL-----NAFVD-----DLFNPNLE 73 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHHHHHHH----CCCEEEEEECCHHHHHHHHHhCC-----eEEEC-----cCCCCCHH
Confidence 4445555566899999999995 6656664 35699999999999888876532 11211 11110011
Q ss_pred CCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 163 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 163 ~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
.-..+|+|.+..- +.+...-+..|.++-+.-|+|
T Consensus 74 ~y~~a~liysirp------p~el~~~~~~la~~~~~~~~i 107 (134)
T PRK04148 74 IYKNAKLIYSIRP------PRDLQPFILELAKKINVPLII 107 (134)
T ss_pred HHhcCCEEEEeCC------CHHHHHHHHHHHHHcCCCEEE
Confidence 2346899987763 444455566677766777777
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00046 Score=70.45 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=64.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.|++||.+|+|.|..+..+.... ...++++||+++++++.|++.+.... ..+.+... ..+-...+....++||
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~--~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~--~~Da~~~L~~~~~~yD 178 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK--TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELI--INDARAELEKRDEKFD 178 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC--CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEE--EChhHHHHhhCCCCcc
Confidence 57899999999998887766633 35789999999999999998875321 11222111 1111111222356899
Q ss_pred EEEeccc-------ccCCCCHHHHHH-HHHHHHhcCCCEEEE
Q 012511 169 LVIASYV-------LGEVPSLQDRIT-IVRQLWDLTRDVLVL 202 (462)
Q Consensus 169 LVias~v-------L~el~~~~~r~~-~i~~Lw~~~gG~LVl 202 (462)
+|++-.. ..+|- ..+..+ .+++.++ ++|.+|+
T Consensus 179 vIi~D~~dp~~~~~~~~Ly-t~eF~~~~~~~~L~-p~Gvlv~ 218 (336)
T PLN02823 179 VIIGDLADPVEGGPCYQLY-TKSFYERIVKPKLN-PGGIFVT 218 (336)
T ss_pred EEEecCCCccccCcchhhc-cHHHHHHHHHHhcC-CCcEEEE
Confidence 9998631 11121 123334 5566665 6898765
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00098 Score=60.60 Aligned_cols=108 Identities=25% Similarity=0.254 Sum_probs=80.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc-CCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI-SKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l-~~~~~~fDLV 170 (462)
++.-||++|.|||..+-++...- .....++++|.|++......++..+.. ++... .-++...+ ......||.|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~g-v~~~~L~~iE~~~dF~~~L~~~~p~~~---ii~gd--a~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRG-VRPESLTAIEYSPDFVCHLNQLYPGVN---IINGD--AFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcC-CCccceEEEEeCHHHHHHHHHhCCCcc---ccccc--hhhHHHHHhhcCCCeeeeE
Confidence 45689999999999999988743 235789999999999887777665532 22211 11222222 2345679999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
|++--|..+| ...+.++++++... .||.||.+--|
T Consensus 122 iS~lPll~~P-~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 122 ISGLPLLNFP-MHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred EeccccccCc-HHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 9999999997 88899999999886 69999998776
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0011 Score=66.94 Aligned_cols=126 Identities=16% Similarity=0.298 Sum_probs=85.0
Q ss_pred hcCchhHHHHHHHHHHHHH-HC-C---CCCC-CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC
Q 012511 68 SRMPAVYSACYRVLCEVRR-RL-P---GFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141 (462)
Q Consensus 68 ~r~p~~Ya~~~~vL~eL~~-rl-p---~~~p-~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~ 141 (462)
.++........+-+..+.. ++ + +|.. ...+|+|.|.|..+-.+...+| .+-+++.....+-.+...+.
T Consensus 147 ~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp----~ik~infdlp~v~~~a~~~~-- 220 (342)
T KOG3178|consen 147 ERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYP----HIKGINFDLPFVLAAAPYLA-- 220 (342)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCC----CCceeecCHHHHHhhhhhhc--
Confidence 4555566566655655543 22 2 2332 6899999999999988777776 36778887776655544442
Q ss_pred CCCCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 142 KDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 142 ~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
..+..+... -+. .+| +-|+|++-.+||+++ +++-.+++++.|+. ++|.+|++|.-+|.
T Consensus 221 ~gV~~v~gd----mfq-~~P----~~daI~mkWiLhdwt-DedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 221 PGVEHVAGD----MFQ-DTP----KGDAIWMKWILHDWT-DEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred CCcceeccc----ccc-cCC----CcCeEEEEeecccCC-hHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 112111111 111 133 457999999999997 78889999999996 79999999997775
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00079 Score=63.57 Aligned_cols=127 Identities=18% Similarity=0.254 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC--CCCC--Cceecc
Q 012511 75 SACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKDL--PLIHSY 150 (462)
Q Consensus 75 a~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~--~~~~--~~i~~~ 150 (462)
..+..||.++ ++... .+||+||||||.-+..++..+|. ....-.|.++..+.--+.-+.. ..|+ |..-..
T Consensus 12 ~pIl~vL~~~---l~~~~-~~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 12 DPILEVLKQY---LPDSG-TRVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred hHHHHHHHHH---hCccC-ceEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence 3444555544 34321 26999999999988888888984 5788888888875433333222 2232 221100
Q ss_pred hhHhhhhhc--cCCCCCcccEEEecccccCCCCHHHHHHH---HHHHHhcCCCEEEEEecCCCCc
Q 012511 151 NSIQALNKD--ISKSEREHDLVIASYVLGEVPSLQDRITI---VRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 151 ~~~~~l~~~--l~~~~~~fDLVias~vL~el~~~~~r~~~---i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
+.....-. .+.....||.|++.|++|-.+ ......+ ..++++ +||.|++--|=...|
T Consensus 86 -~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p-~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G 147 (204)
T PF06080_consen 86 -SAPPWPWELPAPLSPESFDAIFCINMLHISP-WSAVEGLFAGAARLLK-PGGLLFLYGPFNRDG 147 (204)
T ss_pred -CCCCCccccccccCCCCcceeeehhHHHhcC-HHHHHHHHHHHHHhCC-CCCEEEEeCCcccCC
Confidence 00000000 011356899999999999887 4443434 444444 699999987755444
|
The function of this family is unknown. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=64.79 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=58.6
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQA 155 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~ 155 (462)
+.|..+.+. .++++||++|+++|..+++++...+. ..+++.+|.++++.+.|+..++..+- +.++... ....
T Consensus 69 ~lL~~l~~~---~~ak~iLEiGT~~GySal~la~al~~-~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~-a~e~ 143 (247)
T PLN02589 69 QFLNMLLKL---INAKNTMEIGVYTGYSLLATALALPE-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGP-ALPV 143 (247)
T ss_pred HHHHHHHHH---hCCCEEEEEeChhhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEecc-HHHH
Confidence 444444433 35789999999999877777766663 56899999999999999999876532 2222221 1122
Q ss_pred hhhccCC--CCCcccEEEecc
Q 012511 156 LNKDISK--SEREHDLVIASY 174 (462)
Q Consensus 156 l~~~l~~--~~~~fDLVias~ 174 (462)
+...... ..++||+|+.-.
T Consensus 144 L~~l~~~~~~~~~fD~iFiDa 164 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDA 164 (247)
T ss_pred HHHHHhccccCCcccEEEecC
Confidence 2211111 136899998764
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.003 Score=59.20 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=62.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
...+|||++||+|++...+... ....+++||.++.+++.+++.++... +..++.... ...+. .+......||
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr---ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~-~~~l~-~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR---GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA-LRALK-FLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH-HHHHH-HhhccCCCce
Confidence 3579999999999998887763 23489999999999999988876432 112222111 11111 1111122478
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
+|+.-=-... ......+..+.+-+=...+.+|++|...
T Consensus 124 vv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 124 VIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 8877422221 1122323333222112467788888654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00077 Score=67.53 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=60.7
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l 160 (462)
|.|+...+....+..+||.+||.|.-+.++++..+ ...+|+|+|.++.|++.|++.+....++.+++..+ .++...+
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~-~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f--~~l~~~l 84 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLG-PKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNF--SNLKEVL 84 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCC-CCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCH--HHHHHHH
Confidence 44444444322346999999999999999998775 24689999999999999998876522344444321 2222222
Q ss_pred CCCCCcccEEEeccccc
Q 012511 161 SKSEREHDLVIASYVLG 177 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~ 177 (462)
+....++|.|++-.-+.
T Consensus 85 ~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 85 AEGLGKVDGILLDLGVS 101 (296)
T ss_pred HcCCCccCEEEECCCcc
Confidence 21112688887755443
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0012 Score=64.60 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=72.0
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhh-hccC-CCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN-KDIS-KSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~-~~l~-~~~~~fD 168 (462)
..+.+||+.|.|+|.++.+++...+ ...+|+..|..++..+.|++.++.......+.. ...++. ..++ ..+..+|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~-p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~--~~~Dv~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVG-PTGHVYTYEFREDRAEKARKNFERHGLDDNVTV--HHRDVCEEGFDEELESDFD 115 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEE--EES-GGCG--STT-TTSEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhC-CCeEEEccccCHHHHHHHHHHHHHcCCCCCcee--EecceecccccccccCccc
Confidence 3458999999999999998887665 356999999999999999999876432112211 012232 1221 1235788
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
.|+ ..||++...+..+...++++||.|++.-|..
T Consensus 116 avf-----LDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 116 AVF-----LDLPDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp EEE-----EESSSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred EEE-----EeCCCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 876 5678888877777777744799999988863
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0084 Score=60.79 Aligned_cols=116 Identities=9% Similarity=0.175 Sum_probs=71.3
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCC--CccEEEEEeCCHHHHHHHHHhhc--CCCCCCceecchhHhhh
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQ--GPKDLPLIHSYNSIQAL 156 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~--~~~~v~~VD~S~~ml~~Ak~ll~--~~~~~~~i~~~~~~~~l 156 (462)
..+|...++ .+..|+|+|||.|.=+..+.+.+.. ....|++||+|.++++.+...+. ..+.+... .-+.++
T Consensus 67 ~~~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~---~l~gdy 141 (319)
T TIGR03439 67 SSDIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCA---GLLGTY 141 (319)
T ss_pred HHHHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEE---EEEecH
Confidence 355665555 3458999999999755544444421 24689999999999998888776 22322211 001112
Q ss_pred hhc---cCC--CCCcccEEE-ecccccCCCCHHHHHHHHHHHHh-c--CCCEEEE
Q 012511 157 NKD---ISK--SEREHDLVI-ASYVLGEVPSLQDRITIVRQLWD-L--TRDVLVL 202 (462)
Q Consensus 157 ~~~---l~~--~~~~fDLVi-as~vL~el~~~~~r~~~i~~Lw~-~--~gG~LVl 202 (462)
... ++. ......+|+ ...++..++ +.+...+++++.+ . ++|.|+|
T Consensus 142 ~~~l~~l~~~~~~~~~r~~~flGSsiGNf~-~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 142 DDGLAWLKRPENRSRPTTILWLGSSIGNFS-RPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HHHHhhcccccccCCccEEEEeCccccCCC-HHHHHHHHHHHHHhhCCCCCEEEE
Confidence 111 211 122345555 567999996 7788888888876 3 6777666
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0004 Score=73.06 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=60.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEE-----eCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLV-----EPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~V-----D~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~ 166 (462)
.-..+||+|||.|++...+.+. .|+.+ |..+..+++|-+ . .+|.+-.. .-.+.+|++.+.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r------~V~t~s~a~~d~~~~qvqfale---R--Gvpa~~~~----~~s~rLPfp~~~ 181 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER------NVTTMSFAPNDEHEAQVQFALE---R--GVPAMIGV----LGSQRLPFPSNA 181 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC------CceEEEcccccCCchhhhhhhh---c--Ccchhhhh----hccccccCCccc
Confidence 3468899999999988777752 23333 333334444432 1 13322111 013467888999
Q ss_pred ccEEEecccccCCCCHHH-HHHHHHHHHhcCCCEEEEEec
Q 012511 167 HDLVIASYVLGEVPSLQD-RITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 167 fDLVias~vL~el~~~~~-r~~~i~~Lw~~~gG~LVlVEp 205 (462)
||+|-|+.++..-..... .+--+.++++ |||++|+--|
T Consensus 182 fDmvHcsrc~i~W~~~~g~~l~evdRvLR-pGGyfv~S~p 220 (506)
T PF03141_consen 182 FDMVHCSRCLIPWHPNDGFLLFEVDRVLR-PGGYFVLSGP 220 (506)
T ss_pred hhhhhcccccccchhcccceeehhhhhhc-cCceEEecCC
Confidence 999999999865532222 2334677876 7999998543
|
; GO: 0008168 methyltransferase activity |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0017 Score=60.51 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=66.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..++|||+|+|+|..+.+++.. .-..|+..|..+..+...+.+...+. ++.+++. ++ + .++..||+|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a---GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~-----d~---~-g~~~~~Dl~ 146 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA---GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHA-----DL---I-GSPPAFDLL 146 (218)
T ss_pred ccceeeecccccChHHHHHHHh---hhHHHHhcCCChHHHHHhhcchhhccceeEEeec-----cc---c-CCCcceeEE
Confidence 5689999999999888876652 34578888988887766665544322 2222221 11 2 256789999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
+++-++.+-+-....+.....+.. .|-.+++-+||.+
T Consensus 147 LagDlfy~~~~a~~l~~~~~~l~~-~g~~vlvgdp~R~ 183 (218)
T COG3897 147 LAGDLFYNHTEADRLIPWKDRLAE-AGAAVLVGDPGRA 183 (218)
T ss_pred EeeceecCchHHHHHHHHHHHHHh-CCCEEEEeCCCCC
Confidence 999988776533333444444443 3556666677754
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0051 Score=61.63 Aligned_cols=80 Identities=25% Similarity=0.319 Sum_probs=51.4
Q ss_pred HHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCC
Q 012511 86 RRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 86 ~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
....+|+.+-|||+|||.|.....++.. ...+|.+|+.| +|.+.|+.+.........+.... ..+. .+. .++
T Consensus 171 ~N~sDF~~kiVlDVGaGSGILS~FAaqA---GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~--GKiE-die-LPE 242 (517)
T KOG1500|consen 171 ENHSDFQDKIVLDVGAGSGILSFFAAQA---GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIP--GKIE-DIE-LPE 242 (517)
T ss_pred hcccccCCcEEEEecCCccHHHHHHHHh---CcceEEEEehh-HHHHHHHHHHhcCCccceEEEcc--Cccc-ccc-Cch
Confidence 3345789999999999999877655542 45789999987 58889999887642112221100 0111 111 246
Q ss_pred cccEEEec
Q 012511 166 EHDLVIAS 173 (462)
Q Consensus 166 ~fDLVias 173 (462)
+.|+||+-
T Consensus 243 k~DviISE 250 (517)
T KOG1500|consen 243 KVDVIISE 250 (517)
T ss_pred hccEEEec
Confidence 88999874
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.01 Score=54.82 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=54.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
|.-+||+|||+|..+-.++.... ...-+.++|+|+.+.+..++-++... ++..+. .++...+. .++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~-~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~-----tdl~~~l~--~~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG-PQALYLATDINPEALEATLETARCNRVHIDVVR-----TDLLSGLR--NESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhcCCccceee-----hhHHhhhc--cCCccEEE
Confidence 67899999999998888887665 35678999999999988777665422 222222 23444443 27889888
Q ss_pred ec--ccccCC
Q 012511 172 AS--YVLGEV 179 (462)
Q Consensus 172 as--~vL~el 179 (462)
.+ |+..+-
T Consensus 116 fNPPYVpt~~ 125 (209)
T KOG3191|consen 116 FNPPYVPTSD 125 (209)
T ss_pred ECCCcCcCCc
Confidence 75 665443
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0017 Score=63.63 Aligned_cols=144 Identities=15% Similarity=0.178 Sum_probs=77.6
Q ss_pred HHHHHHHhcC---chhHH---HHHHHHHHHHHHCC--CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHH
Q 012511 61 ETIAYVASRM---PAVYS---ACYRVLCEVRRRLP--GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQR 132 (462)
Q Consensus 61 e~~AYla~r~---p~~Ya---~~~~vL~eL~~rlp--~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~ 132 (462)
+..+|+...+ ....+ .+...|..+.+... ..++.++|||||||-. ..++.. - +...++++.|.++.-++
T Consensus 17 dP~~Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPti-y~~lsa-~-~~f~~I~l~dy~~~N~~ 93 (256)
T PF01234_consen 17 DPRAYLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTI-YQLLSA-C-EWFEEIVLSDYSEQNRE 93 (256)
T ss_dssp -HHHHHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT---GGGTTG-G-GTEEEEEEEESSHHHHH
T ss_pred CHHHHHHHhcCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHH-HhhhhH-H-HhhcceEEeeccHhhHH
Confidence 5566765433 12222 33345555555542 3456799999999933 222221 0 13578999999999888
Q ss_pred HHHHhhcCCCCCCceec---------c-hhH----h------------hhhhccC--C---CCCcccEEEecccccCCC-
Q 012511 133 AGQSLMQGPKDLPLIHS---------Y-NSI----Q------------ALNKDIS--K---SEREHDLVIASYVLGEVP- 180 (462)
Q Consensus 133 ~Ak~ll~~~~~~~~i~~---------~-~~~----~------------~l~~~l~--~---~~~~fDLVias~vL~el~- 180 (462)
..++-+++.....+.+. . ..+ . ++.+.-| . .+.+||+|+++++|.-..
T Consensus 94 el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~ 173 (256)
T PF01234_consen 94 ELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACK 173 (256)
T ss_dssp HHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-S
T ss_pred HHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcC
Confidence 77776665321111000 0 000 0 1111111 1 123599999999997764
Q ss_pred CHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 181 SLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 181 ~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
+.++-...++++.++ |||+||++.--.
T Consensus 174 d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 174 DLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 455556677777765 899999986543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0035 Score=63.35 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=51.8
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecch-hHhhhhhccCCCCCccc
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYN-SIQALNKDISKSEREHD 168 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~-~~~~l~~~l~~~~~~fD 168 (462)
.|+.+.|||+|||+|..+.-+++. ...+|++||.|.-+ +.|++++........+.... .+.++ .+| .++.|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA---GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP--~eKVD 129 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA---GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--ELP--VEKVD 129 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh---CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ecC--cccee
Confidence 378899999999999877655553 34689999998765 88888886644322222110 01112 233 57899
Q ss_pred EEEeccc
Q 012511 169 LVIASYV 175 (462)
Q Consensus 169 LVias~v 175 (462)
+||+-++
T Consensus 130 iIvSEWM 136 (346)
T KOG1499|consen 130 IIVSEWM 136 (346)
T ss_pred EEeehhh
Confidence 9998654
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0028 Score=60.25 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=60.1
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC-CCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~-~~~~~fDLVi 171 (462)
+.++|||||=......... ...+|+.||.++.- .. +.... ++...+| ...++||+|+
T Consensus 52 ~lrlLEVGals~~N~~s~~-----~~fdvt~IDLns~~-----------~~--I~qqD----Fm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTS-----GWFDVTRIDLNSQH-----------PG--ILQQD----FMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCccccc-----CceeeEEeecCCCC-----------CC--ceeec----cccCCCCCCcccceeEEE
Confidence 4799999986443332222 23469999988621 11 11111 1333344 2467899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--CCCE-----EEEEecC
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDL--TRDV-----LVLVEPG 206 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~--~gG~-----LVlVEpG 206 (462)
+|.||+.+|++.+|-+.+++..+. ++|. |.||=|-
T Consensus 110 ~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 110 LSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 999999999999998877666553 6777 8888664
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0021 Score=57.11 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=57.9
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKD 159 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~ 159 (462)
+.-|....+++.++.|+|+|||.|....++.- + ....+.|+|+.++.++.+..++.... ++.+++. ++..
T Consensus 37 ~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm--~-~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqc-----dild- 107 (185)
T KOG3420|consen 37 LYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSM--P-KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQC-----DILD- 107 (185)
T ss_pred HHHHHhhhccccCcchhhhcCchhhhHHHhhc--C-CCceEEeeecCHHHHHHHhhchHHhhhhhheeee-----eccc-
Confidence 33344455778889999999999998866553 2 46789999999999999987765532 1222221 1211
Q ss_pred cCCCCCcccEEEeccccc
Q 012511 160 ISKSEREHDLVIASYVLG 177 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~ 177 (462)
+....+.||.+|.+--+.
T Consensus 108 le~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 108 LELKGGIFDTAVINPPFG 125 (185)
T ss_pred hhccCCeEeeEEecCCCC
Confidence 122346788887765444
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0052 Score=57.95 Aligned_cols=120 Identities=15% Similarity=0.138 Sum_probs=72.8
Q ss_pred CchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCC----
Q 012511 70 MPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP---- 145 (462)
Q Consensus 70 ~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~---- 145 (462)
.|-.|+.++..|....+ | +.+.||+|+|+|.++-.++...+......++||.=++.++.+++.+...-..+
T Consensus 65 Ap~mha~~le~L~~~L~--p---G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~ 139 (237)
T KOG1661|consen 65 APHMHATALEYLDDHLQ--P---GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSS 139 (237)
T ss_pred chHHHHHHHHHHHHhhc--c---CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhh
Confidence 45667766655543322 3 36899999999987766665444334455999999999999998886421100
Q ss_pred -ceecc--hhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 146 -LIHSY--NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 146 -~i~~~--~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
+-... ....+-. .......+||-|.+.-.-.+++ .+++.+|. +||.|||
T Consensus 140 ~~~~~~l~ivvGDgr-~g~~e~a~YDaIhvGAaa~~~p-----q~l~dqL~--~gGrlli 191 (237)
T KOG1661|consen 140 KLKRGELSIVVGDGR-KGYAEQAPYDAIHVGAAASELP-----QELLDQLK--PGGRLLI 191 (237)
T ss_pred hhccCceEEEeCCcc-ccCCccCCcceEEEccCccccH-----HHHHHhhc--cCCeEEE
Confidence 00000 0001111 1123467899999997666664 34777774 4676665
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.012 Score=52.30 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=58.3
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCC--CccEEEEEeCCHHHHHHHHHhhcCCCC-C-CceecchhHhhhhhccCCCCCc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQGPKD-L-PLIHSYNSIQALNKDISKSERE 166 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~--~~~~v~~VD~S~~ml~~Ak~ll~~~~~-~-~~i~~~~~~~~l~~~l~~~~~~ 166 (462)
..+.+|+|+|||-|..+..++..|++ ...+|++||.++.+.+.+..+.+.... . ..+. ........ . .....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~-~-~~~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLS--FIQGDIAD-E-SSSDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccch--hhccchhh-h-cccCC
Confidence 45689999999999999988885532 246899999999999998887765331 1 0110 00001111 0 12457
Q ss_pred ccEEEecccccCCC
Q 012511 167 HDLVIASYVLGEVP 180 (462)
Q Consensus 167 fDLVias~vL~el~ 180 (462)
.+++|.-|+-..|.
T Consensus 100 ~~~~vgLHaCG~Ls 113 (141)
T PF13679_consen 100 PDILVGLHACGDLS 113 (141)
T ss_pred CeEEEEeecccchH
Confidence 78999999999995
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0042 Score=65.92 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=68.1
Q ss_pred cCHHHHHHHHHh-cCchhHHHHHHHHHH-HHHHCCCC----CCCeEEEECCchhHHHHHHHHhC---CCCccEEEEEeCC
Q 012511 57 YRDDETIAYVAS-RMPAVYSACYRVLCE-VRRRLPGF----SPAKVLDFGAGTGSAFWALREVW---PRSLEKVNLVEPS 127 (462)
Q Consensus 57 y~~~e~~AYla~-r~p~~Ya~~~~vL~e-L~~rlp~~----~p~rVLDvG~G~G~~~~al~~~~---~~~~~~v~~VD~S 127 (462)
.+.++...|-.. +=+.-|..-.+++.+ |..+.... +...|||+|||+|.++..+.... . ...+|++||.|
T Consensus 145 ~dnL~s~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~-~a~~VyAVEkn 223 (448)
T PF05185_consen 145 MDNLESQTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAG-GAVKVYAVEKN 223 (448)
T ss_dssp TS---HHHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHC-CESEEEEEESS
T ss_pred hhhhccccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 456677777655 334444433333222 23232222 35689999999998876544421 1 24699999999
Q ss_pred HHHHHHHHHhhc--CCC-CCCceecchhHhhhhhccCCCCCcccEEEe----cccccCCCCHHHHHHHHHHHHhcCCC
Q 012511 128 QSMQRAGQSLMQ--GPK-DLPLIHSYNSIQALNKDISKSEREHDLVIA----SYVLGEVPSLQDRITIVRQLWDLTRD 198 (462)
Q Consensus 128 ~~ml~~Ak~ll~--~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVia----s~vL~el~~~~~r~~~i~~Lw~~~gG 198 (462)
+.+....+.+++ +.. .+.+++. +... +. ...+.|+||+ ++..+|+. + +.+...+++++ ++|
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~-----d~r~-v~-lpekvDIIVSElLGsfg~nEl~-p-E~Lda~~rfLk-p~G 291 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHG-----DMRE-VE-LPEKVDIIVSELLGSFGDNELS-P-ECLDAADRFLK-PDG 291 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES------TTT-SC-HSS-EEEEEE---BTTBTTTSH-H-HHHHHGGGGEE-EEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeC-----cccC-CC-CCCceeEEEEeccCCccccccC-H-HHHHHHHhhcC-CCC
Confidence 988777665533 222 2333332 1221 21 2348999987 45566763 3 34555556665 344
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0029 Score=65.18 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 73 VYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 73 ~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
|......++..+.+.+. ..+.+|||+|||+|+++.+++.. ..+|++||.|++|++.|++.++.
T Consensus 179 N~~~~~~l~~~v~~~~~-~~~~~vlDl~~G~G~~sl~la~~----~~~v~~vE~~~~av~~a~~n~~~ 241 (353)
T TIGR02143 179 NAAVNIKMLEWACEVTQ-GSKGDLLELYCGNGNFSLALAQN----FRRVLATEIAKPSVNAAQYNIAA 241 (353)
T ss_pred CHHHHHHHHHHHHHHhh-cCCCcEEEEeccccHHHHHHHHh----CCEEEEEECCHHHHHHHHHHHHH
Confidence 34334444444444332 12347999999999999988874 34899999999999999988754
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0059 Score=56.40 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=34.9
Q ss_pred HHHHHHHCCCC---CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHH
Q 012511 81 LCEVRRRLPGF---SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQS 129 (462)
Q Consensus 81 L~eL~~rlp~~---~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ 129 (462)
|.|+.++.+-+ .+.+|||+||+||..+..+.+... ...+|++||..+.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~-~~~~v~avDl~~~ 59 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGG-PAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTT-TEEEEEEEESSST
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeeccc-ccceEEEEecccc
Confidence 45566665523 348999999999999988887541 2479999999876
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00051 Score=64.38 Aligned_cols=94 Identities=16% Similarity=0.239 Sum_probs=67.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.|.++||+|+|.|..+...+.. .++|.+.+.|..|++..+.+ ++ + .+... +.. ..+-+||+|.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~----feevyATElS~tMr~rL~kk--~y-n--Vl~~~----ew~----~t~~k~dli~ 174 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT----FEEVYATELSWTMRDRLKKK--NY-N--VLTEI----EWL----QTDVKLDLIL 174 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch----HHHHHHHHhhHHHHHHHhhc--CC-c--eeeeh----hhh----hcCceeehHH
Confidence 4689999999999988776664 45799999999999876642 11 1 12111 111 2345899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|-++|.-..++-..++-|+..++.++|..|+
T Consensus 175 clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 175 CLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 9999987777777777778777766776554
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0076 Score=60.05 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=74.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.|++||=+|-|.|..++.+.+.- +..+++.||+++.+++.+++.+.... +-|.+... .++-.+-+.....+||
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~--~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~--i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHL--PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEII--IDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcC--CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEE--eccHHHHHHhCCCcCC
Confidence 45799999999999999988854 37899999999999999999886533 11332211 1111111222334899
Q ss_pred EEEecccccCCC----CHHHHHHHHHHHHhcCCCEEEEEecCCCCch
Q 012511 169 LVIASYVLGEVP----SLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 211 (462)
Q Consensus 169 LVias~vL~el~----~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf 211 (462)
+||+--+=..=+ -..+..+.++++++ ++|.+|.- .|+|...
T Consensus 152 vIi~D~tdp~gp~~~Lft~eFy~~~~~~L~-~~Gi~v~q-~~~~~~~ 196 (282)
T COG0421 152 VIIVDSTDPVGPAEALFTEEFYEGCRRALK-EDGIFVAQ-AGSPFLQ 196 (282)
T ss_pred EEEEcCCCCCCcccccCCHHHHHHHHHhcC-CCcEEEEe-cCCcccc
Confidence 999754432111 01455667777776 58988876 5666554
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0066 Score=59.56 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=51.0
Q ss_pred HHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceec
Q 012511 78 YRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS 149 (462)
Q Consensus 78 ~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~ 149 (462)
..++..+........+.+||+||+|.|+.+..+.+ ...+|++||+++.|....++.+....++..++.
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~----~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~ 83 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLE----RAARVTAIEIDRRLAEVLKERFAPYDNLTVING 83 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHh----hcCeEEEEEeCHHHHHHHHHhcccccceEEEeC
Confidence 34455555554333457999999999999999987 456899999999999998888765555555543
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0079 Score=58.86 Aligned_cols=59 Identities=27% Similarity=0.250 Sum_probs=47.5
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
+++.|....+.-.+..||++|.|||..+..+.+ ...+|+++|..+.|+....++.++.+
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe----~~kkVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLE----AGKKVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHH----hcCeEEEEecCcHHHHHHHHHhcCCC
Confidence 445555554444568999999999999999887 46799999999999999888888764
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0042 Score=60.71 Aligned_cols=106 Identities=20% Similarity=0.320 Sum_probs=63.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceec--chhHhhhhhccCCCCC-
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHS--YNSIQALNKDISKSER- 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~--~~~~~~l~~~l~~~~~- 165 (462)
.|.+||=+|.|.|..+..+... + ...++++||+++.+++.|++.+.... +-+.+.. .+-...+. ....
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~-~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~----~~~~~ 149 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKH-P-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK----ETQEE 149 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTS-T-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH----TSSST
T ss_pred CcCceEEEcCCChhhhhhhhhc-C-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH----hccCC
Confidence 5799999999999988887763 2 35799999999999999998764311 1122211 11112222 2233
Q ss_pred cccEEEecccccCCCC----HHHHHHHHHHHHhcCCCEEEEEe
Q 012511 166 EHDLVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 166 ~fDLVias~vL~el~~----~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+||+||.-..-..-+. ..+-.+.+++.++ ++|.+++=-
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~~Gv~v~~~ 191 (246)
T PF01564_consen 150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLK-PDGVLVLQA 191 (246)
T ss_dssp -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEE-EEEEEEEEE
T ss_pred cccEEEEeCCCCCCCcccccCHHHHHHHHhhcC-CCcEEEEEc
Confidence 8999997433211111 1344566666665 689988755
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0092 Score=58.81 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=64.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.|++||=+|.|.|.++..+.+. + .+|+.||+++++++.+++-+.... +-|.+.... .+. ....++||
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~---~~~---~~~~~~fD 141 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-D---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK---QLL---DLDIKKYD 141 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-C---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee---hhh---hccCCcCC
Confidence 5899999999999988887763 3 399999999999999998664321 223333211 111 11236899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
+||+-.+ . ..+-.+.+++.++ ++|.+|.
T Consensus 142 VIIvDs~----~-~~~fy~~~~~~L~-~~Gi~v~ 169 (262)
T PRK00536 142 LIICLQE----P-DIHKIDGLKRMLK-EDGVFIS 169 (262)
T ss_pred EEEEcCC----C-ChHHHHHHHHhcC-CCcEEEE
Confidence 9997632 2 2344456677776 6888885
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0054 Score=63.39 Aligned_cols=63 Identities=21% Similarity=0.147 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 73 VYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 73 ~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
|......++..+...+.. .+.+|||++||+|+++.+++.. ..+|++||.|+.|++.|++.+..
T Consensus 188 N~~~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~----~~~v~~vE~~~~ai~~a~~N~~~ 250 (362)
T PRK05031 188 NAAVNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN----FRRVLATEISKPSVAAAQYNIAA 250 (362)
T ss_pred CHHHHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh----CCEEEEEECCHHHHHHHHHHHHH
Confidence 333344444444444321 2357999999999999988874 35899999999999999987753
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.012 Score=63.87 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=40.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCC------CccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPR------SLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~------~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
...+|||.|||+|.++.++...++. ....++++|+++.++..++.++....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 3569999999999999888776531 12578999999999999988775543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.038 Score=46.41 Aligned_cols=105 Identities=20% Similarity=0.150 Sum_probs=59.8
Q ss_pred EEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC---CceecchhHhhhhh-ccCCCC-CcccEE
Q 012511 96 VLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL---PLIHSYNSIQALNK-DISKSE-REHDLV 170 (462)
Q Consensus 96 VLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~---~~i~~~~~~~~l~~-~l~~~~-~~fDLV 170 (462)
+||+|||+|... .+....+ ....++++|.++.|+..++..... ... .... .+... .++... ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG-RGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVV-----ADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC-CCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEE-----eccccCCCCCCCCCceeEE
Confidence 999999999865 3333221 114788899999999986554422 211 1111 11111 133333 479999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
+.....+..........+....+ ++|.+++........
T Consensus 124 -~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~ 161 (257)
T COG0500 124 -ISLLVLHLLPPAKALRELLRVLK-PGGRLVLSDLLRDGL 161 (257)
T ss_pred -eeeeehhcCCHHHHHHHHHHhcC-CCcEEEEEeccCCCC
Confidence 55544443334444444555544 589998887765443
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.027 Score=60.09 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=42.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
.+.+|||++||||.=+.++++.+++ ...++++|+++..++..++.++..+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~-~g~lvA~D~~~~R~~~L~~nl~r~G 162 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNN-QGAIVANEYSASRVKVLHANISRCG 162 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 4579999999999988888887763 4589999999999999888887643
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.037 Score=52.60 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=31.8
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
....+|+|||.|..+.+++-..+ ..+.+|||..+...+.|+...+
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~--~~~~~GIEi~~~~~~~a~~~~~ 87 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTG--CKKSVGIEILPELHDLAEELLE 87 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH----SEEEEEE-SHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHcC--CcEEEEEEechHHHHHHHHHHH
Confidence 46899999999988776555443 5679999999998888876553
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0063 Score=55.14 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=63.4
Q ss_pred CCeEEEECCc-hhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAG-TGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G-~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+.+||++|.| +|.+...++-.-+ ...|.+.|.+.+.++-.+++.... ....... ...+............+||+
T Consensus 30 g~~ilelgggft~laglmia~~a~--~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~-vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAP--DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCC-VLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecC--CceEEEecCCHHHHHHHHHHHhcccccccceeh-hhHHHHhhhHHHHhhCcccE
Confidence 3689999999 5654444443332 468999999999888777665332 1111111 11111111111123458999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|+|+-.+..-..-+.....|+.+++ |.|.-++..|
T Consensus 107 IlaADClFfdE~h~sLvdtIk~lL~-p~g~Al~fsP 141 (201)
T KOG3201|consen 107 ILAADCLFFDEHHESLVDTIKSLLR-PSGRALLFSP 141 (201)
T ss_pred EEeccchhHHHHHHHHHHHHHHHhC-cccceeEecC
Confidence 9999887654334455667777776 5665555444
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.065 Score=53.03 Aligned_cols=121 Identities=19% Similarity=0.296 Sum_probs=80.4
Q ss_pred HHHHHHHHCC----CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---C---CCceec
Q 012511 80 VLCEVRRRLP----GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---D---LPLIHS 149 (462)
Q Consensus 80 vL~eL~~rlp----~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~---~~~i~~ 149 (462)
++.+|.+..| +..+.+||-=|||.|.++|.++.. ...+.+.|.|-.|+-...-++.... . .|+++.
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~----G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL----GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc----cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 4555555555 234579999999999999999873 5689999999999988887775411 1 144332
Q ss_pred chhH-------------------------------hhhhhccCCC--CCcccEEEecccccCCCCHHHHHHHHHHHHhcC
Q 012511 150 YNSI-------------------------------QALNKDISKS--EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT 196 (462)
Q Consensus 150 ~~~~-------------------------------~~l~~~l~~~--~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~ 196 (462)
..+. .++....... .++||.|+..|.+.-.++.-+-++.|.++++ |
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk-p 194 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK-P 194 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc-c
Confidence 1110 0111100111 3689999999888777666666778888886 6
Q ss_pred CCEEEEEec
Q 012511 197 RDVLVLVEP 205 (462)
Q Consensus 197 gG~LVlVEp 205 (462)
||+.|=+-|
T Consensus 195 gG~WIN~GP 203 (270)
T PF07942_consen 195 GGYWINFGP 203 (270)
T ss_pred CCEEEecCC
Confidence 997776554
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.013 Score=53.71 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=36.6
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
.|||+.||.|..+++++..+ ..|++||.++..++.|+..++-++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~----~~Viaidid~~~~~~a~hNa~vYG 45 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF----DRVIAIDIDPERLECAKHNAEVYG 45 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-----EEEEEES-HHHHHHHHHHHHHTT
T ss_pred EEEEeccCcCHHHHHHHHhC----CeEEEEECCHHHHHHHHHHHHHcC
Confidence 69999999999999999865 479999999999999999887553
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.056 Score=56.29 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=58.5
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+|||++||+|..+..++...+ ..+|+++|.++.+++.++++++..+ +..+.. .+....+.. ..+||+|+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~--~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~-----~Da~~~l~~-~~~fD~V~ 130 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG--VEKVTLNDINPDAVELIKKNLELNGLENEKVFN-----KDANALLHE-ERKFDVVD 130 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEh-----hhHHHHHhh-cCCCCEEE
Confidence 5899999999998887765443 3589999999999999998875322 211111 122211211 35799998
Q ss_pred ecccccCCCCHHHHHHH-HHHHHhcCCCEEEEE
Q 012511 172 ASYVLGEVPSLQDRITI-VRQLWDLTRDVLVLV 203 (462)
Q Consensus 172 as~vL~el~~~~~r~~~-i~~Lw~~~gG~LVlV 203 (462)
+.-. ..+...+.. +..+ .++|.|.+-
T Consensus 131 lDP~----Gs~~~~l~~al~~~--~~~gilyvS 157 (382)
T PRK04338 131 IDPF----GSPAPFLDSAIRSV--KRGGLLCVT 157 (382)
T ss_pred ECCC----CCcHHHHHHHHHHh--cCCCEEEEE
Confidence 7531 222222222 3222 257877774
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.064 Score=52.85 Aligned_cols=157 Identities=18% Similarity=0.197 Sum_probs=76.6
Q ss_pred HHHHHHHHhcCchhHHHH--HH-HHHHHHHHCCCC-CCCeEEEECCchhH--HHHHH-HHhCCCCccEEEEEeCCHHHHH
Q 012511 60 DETIAYVASRMPAVYSAC--YR-VLCEVRRRLPGF-SPAKVLDFGAGTGS--AFWAL-REVWPRSLEKVNLVEPSQSMQR 132 (462)
Q Consensus 60 ~e~~AYla~r~p~~Ya~~--~~-vL~eL~~rlp~~-~p~rVLDvG~G~G~--~~~al-~~~~~~~~~~v~~VD~S~~ml~ 132 (462)
.++...+...+|..-..+ .+ .|....+.+-.. .-...||+|||-=| .+-.+ ...-| ..+|+-||..+-.+.
T Consensus 32 R~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P--~aRVVYVD~DPvv~a 109 (267)
T PF04672_consen 32 REAAERLLAAAPEIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAP--DARVVYVDNDPVVLA 109 (267)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-T--T-EEEEEESSHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCC--CceEEEECCCchHHH
Confidence 355566666676544322 12 122211111121 34689999999322 23333 33333 479999999999999
Q ss_pred HHHHhhcCCCC--CCceecchh-H-hhhh-----hccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc-CCCEEEE
Q 012511 133 AGQSLMQGPKD--LPLIHSYNS-I-QALN-----KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVL 202 (462)
Q Consensus 133 ~Ak~ll~~~~~--~~~i~~~~~-~-~~l~-----~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~-~gG~LVl 202 (462)
.++.++.+..+ ..++..... . ..+. ..+.. .+.=.|+..-+||++++.++-..+++.+.+. +-|..+.
T Consensus 110 h~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~--~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ 187 (267)
T PF04672_consen 110 HARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF--DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLA 187 (267)
T ss_dssp CCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T--TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEE
T ss_pred HHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC--CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEE
Confidence 99999987654 233332210 0 0111 11111 1222577888999999877777888888876 4454445
Q ss_pred EecCCCCch-HHHHHHHHH
Q 012511 203 VEPGTPQGS-SIISQMRSH 220 (462)
Q Consensus 203 VEpGtp~Gf-~~I~~aR~~ 220 (462)
|-+.|..+. +....++++
T Consensus 188 ish~t~d~~p~~~~~~~~~ 206 (267)
T PF04672_consen 188 ISHATDDGAPERAEALEAV 206 (267)
T ss_dssp EEEEB-TTSHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHH
Confidence 555555543 333444444
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.021 Score=57.48 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=68.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCC-----CCccEEEEEeCCHHHHHHHHHhh--cCCCCC--CceecchhHhhhhhccCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWP-----RSLEKVNLVEPSQSMQRAGQSLM--QGPKDL--PLIHSYNSIQALNKDISK 162 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~-----~~~~~v~~VD~S~~ml~~Ak~ll--~~~~~~--~~i~~~~~~~~l~~~l~~ 162 (462)
...+|||-.||+|.++.++.+.+. .....++|+|.++.+..+|+..+ .+.... ...... .+......
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d----~l~~~~~~ 121 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGD----SLENDKFI 121 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-----TTTSHSCT
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccc----cccccccc
Confidence 346899999999999988776431 02468999999999999887543 221111 111111 11111111
Q ss_pred CCCcccEEEecccccCC--CC----------------HHHHHHHHHHHHhc--CCCEEEEEecCCCC-chHHHHHHHHHH
Q 012511 163 SEREHDLVIASYVLGEV--PS----------------LQDRITIVRQLWDL--TRDVLVLVEPGTPQ-GSSIISQMRSHI 221 (462)
Q Consensus 163 ~~~~fDLVias~vL~el--~~----------------~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~-Gf~~I~~aR~~l 221 (462)
...+||+||++--.... .. ...-..++...++. ++|.+++|-|..-. .-..-..+|+.|
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~l 201 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYL 201 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHH
Confidence 24689999986322211 10 01112345555544 68988777764321 111225679998
Q ss_pred HH
Q 012511 222 LW 223 (462)
Q Consensus 222 L~ 223 (462)
|+
T Consensus 202 l~ 203 (311)
T PF02384_consen 202 LE 203 (311)
T ss_dssp HH
T ss_pred Hh
Confidence 85
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.039 Score=58.30 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=69.8
Q ss_pred CchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCce
Q 012511 70 MPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLI 147 (462)
Q Consensus 70 ~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i 147 (462)
+-.|.+.....+.....-+...+..+|||+=||.|+++..++. ...+|++||+++++++.|++.++..+ |..+.
T Consensus 271 ~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~----~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~ 346 (432)
T COG2265 271 FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAK----RVKKVHGVEISPEAVEAAQENAAANGIDNVEFI 346 (432)
T ss_pred eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcc----cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEE
Confidence 3345555555555555554444457999999999999999885 46799999999999999999887543 22222
Q ss_pred ecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc
Q 012511 148 HSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL 195 (462)
Q Consensus 148 ~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~ 195 (462)
.. ....+.... .....+|.||.-=-=.-+. ..+++.+.+.
T Consensus 347 ~~--~ae~~~~~~-~~~~~~d~VvvDPPR~G~~-----~~~lk~l~~~ 386 (432)
T COG2265 347 AG--DAEEFTPAW-WEGYKPDVVVVDPPRAGAD-----REVLKQLAKL 386 (432)
T ss_pred eC--CHHHHhhhc-cccCCCCEEEECCCCCCCC-----HHHHHHHHhc
Confidence 11 111121111 1235789988643222221 2356666665
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.091 Score=50.42 Aligned_cols=81 Identities=16% Similarity=0.274 Sum_probs=55.2
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccC-CCCCc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDIS-KSERE 166 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~-~~~~~ 166 (462)
.+|+++||+|.=||..+++.+...|+ ..+|+++|.++...+.+..+.+..+ .+.+++. .....+.+.+. .+.++
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~-dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g-~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPE-DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEG-PALESLDELLADGESGT 149 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCC-CceEEEEecChHHHHHhHHHHHhccccceeeeeec-chhhhHHHHHhcCCCCc
Confidence 35799999998788777777777885 7799999999999999988775432 1223322 11223333222 25679
Q ss_pred ccEEEec
Q 012511 167 HDLVIAS 173 (462)
Q Consensus 167 fDLVias 173 (462)
||+++.-
T Consensus 150 fDfaFvD 156 (237)
T KOG1663|consen 150 FDFAFVD 156 (237)
T ss_pred eeEEEEc
Confidence 9999864
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.024 Score=52.88 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=61.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC---CceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL---PLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~---~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+=||+|.....+... ...+|+.||.|....+..++.++..... ..+.. .....+.+ ......+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR---GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~-d~~~~l~~-~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR---GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG-DAFKFLLK-LAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES-SHHHHHHH-HHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc-CHHHHHHh-hcccCCCce
Confidence 4589999999999887755541 4579999999999999999888754321 11211 11112221 112357899
Q ss_pred EEEec--ccccCCCCHHHHHHHHHHHHhc---CCCEEEEEecCCC
Q 012511 169 LVIAS--YVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGTP 208 (462)
Q Consensus 169 LVias--~vL~el~~~~~r~~~i~~Lw~~---~gG~LVlVEpGtp 208 (462)
+|++- |..... ...++..|.+. ..+.+|++|....
T Consensus 117 iIflDPPY~~~~~-----~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 117 IIFLDPPYAKGLY-----YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEE--STTSCHH-----HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EEEECCCcccchH-----HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 99874 222110 23345555432 3577888887654
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.045 Score=51.18 Aligned_cols=110 Identities=22% Similarity=0.303 Sum_probs=63.0
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
+|+|+|+|.|--...++=.+| ..+++.+|.+..-...-+...... .|+..++.. ... ......||+|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p--~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R-----~E~--~~~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP--DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGR-----AEE--PEYRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T--TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES------HHH--TTTTT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCC--CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEee-----ecc--cccCCCccEEEe
Confidence 899999998843333333355 458999999998666665555432 233333321 111 234678999987
Q ss_pred cccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHH
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSH 220 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~ 220 (462)
--+ . ......++...+++ ++|.+++.- | +...+-+.+++..
T Consensus 122 RAv-~---~l~~l~~~~~~~l~-~~G~~l~~K-G-~~~~~El~~~~~~ 162 (184)
T PF02527_consen 122 RAV-A---PLDKLLELARPLLK-PGGRLLAYK-G-PDAEEELEEAKKA 162 (184)
T ss_dssp ESS-S---SHHHHHHHHGGGEE-EEEEEEEEE-S-S--HHHHHTHHHH
T ss_pred ehh-c---CHHHHHHHHHHhcC-CCCEEEEEc-C-CChHHHHHHHHhH
Confidence 543 2 34455666677766 588888763 2 2333445455444
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.056 Score=53.66 Aligned_cols=103 Identities=15% Similarity=0.215 Sum_probs=49.6
Q ss_pred CCCeEEEECCchh--HHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC-C--C-CCCceecchhHhhhhhccCCCCC
Q 012511 92 SPAKVLDFGAGTG--SAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG-P--K-DLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G--~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~-~--~-~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.|.+|+=+||||- |.++.+.... ....++++|.+++..+.|+++++. . . ...++... .. .....-.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~--~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d-----~~-~~~~dl~ 191 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHG--PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITAD-----VL-DVTYDLK 191 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HT--T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES------GG-GG-GG--
T ss_pred ccceEEEEcCCCcchHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecc-----hh-ccccccc
Confidence 5789999999975 4343333322 235789999999999999998872 1 1 12222211 11 1112235
Q ss_pred cccEEEecccccCCCCHHHHHHHHHHHHhc-CCCEEEEEe
Q 012511 166 EHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVE 204 (462)
Q Consensus 166 ~fDLVias~vL~el~~~~~r~~~i~~Lw~~-~gG~LVlVE 204 (462)
.||+|+.+-....- .+...+++.++++. +.|.+|++-
T Consensus 192 ~~DvV~lAalVg~~--~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 192 EYDVVFLAALVGMD--AEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp --SEEEE-TT-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cCCEEEEhhhcccc--cchHHHHHHHHHhhCCCCcEEEEe
Confidence 89999877555432 33455678888775 445555554
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.023 Score=49.94 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=36.3
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+|||+|||.|..+..+....+ ..+++++|+++.+.+.++..++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~--~~~v~~~E~~~~~~~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA--EGRVIAFEPLPDAYEILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC--CCEEEEEecCHHHHHHHHHHHHH
Confidence 489999999988877777654 24899999999999998887653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.03 Score=57.64 Aligned_cols=64 Identities=17% Similarity=0.051 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 72 AVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 72 ~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
.|......++..+...++.. +.+|||+=||.|+++..++. ...+|+|||.++++++.|+..++.
T Consensus 177 vN~~~~~~l~~~~~~~l~~~-~~~vlDlycG~G~fsl~la~----~~~~V~gvE~~~~av~~A~~Na~~ 240 (352)
T PF05958_consen 177 VNPEQNEKLYEQALEWLDLS-KGDVLDLYCGVGTFSLPLAK----KAKKVIGVEIVEEAVEDARENAKL 240 (352)
T ss_dssp SBHHHHHHHHHHHHHHCTT--TTEEEEES-TTTCCHHHHHC----CSSEEEEEES-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhcC-CCcEEEEeecCCHHHHHHHh----hCCeEEEeeCCHHHHHHHHHHHHH
Confidence 44445555666666655533 34899999999999999987 456899999999999999988753
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.036 Score=54.59 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=47.2
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCcee
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH 148 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~ 148 (462)
...|...+.......|||+|+|+|..+.++.+. ..++++||.++.+.+..++.+....++.+++
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~----~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~ 82 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKR----GKRVIAVEIDPDLAKHLKERFASNPNVEVIN 82 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH----SSEEEEEESSHHHHHHHHHHCTTCSSEEEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc----cCcceeecCcHhHHHHHHHHhhhcccceeee
Confidence 334444333224579999999999999999885 3689999999999999888776444444444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.043 Score=50.95 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=50.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCc-------cEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCC
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSL-------EKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~-------~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
...|||-=||+||.+..++..+.... .+++|+|+++.+++.|+.+++...-...+... ..+.. .++...+
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~--~~D~~-~l~~~~~ 105 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI--QWDAR-ELPLPDG 105 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE--E--GG-GGGGTTS
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE--ecchh-hcccccC
Confidence 36899999999999987766554311 14899999999999999998764422222110 01121 2333456
Q ss_pred cccEEEecccccC
Q 012511 166 EHDLVIASYVLGE 178 (462)
Q Consensus 166 ~fDLVias~vL~e 178 (462)
.+|.||++-=...
T Consensus 106 ~~d~IvtnPPyG~ 118 (179)
T PF01170_consen 106 SVDAIVTNPPYGR 118 (179)
T ss_dssp BSCEEEEE--STT
T ss_pred CCCEEEECcchhh
Confidence 8999998754444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.17 Score=48.94 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=66.8
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
..+||||||.|..+..++...|+ ..++|||+...-+..+...+... .|+-++... ...+...+ .+.++.|-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~--~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~D--A~~~l~~~-~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE--KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGD--AVEVLDYL-IPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC--CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCC--HHHHHHhc-CCCCCeeEEE
Confidence 47999999999999999998875 47999999998887776666443 244333322 11122222 2345788887
Q ss_pred ecccccCCCCH--------HHHHHHHHHHHhcCCCEEEEEe
Q 012511 172 ASYVLGEVPSL--------QDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 172 as~vL~el~~~--------~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
..|-==+.... ...++.+.+.++ +||.|.+.-
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk-~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLK-PGGVLHFAT 164 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcc-CCCEEEEEe
Confidence 76643222211 123445555554 699999854
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.068 Score=50.74 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=47.5
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
...|-|+|||.+..+-++.. ..+|...|.-+. + +.+.. .++. .+|..++..|++|+
T Consensus 73 ~~viaD~GCGdA~la~~~~~-----~~~V~SfDLva~-------------n-~~Vta----cdia-~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN-----KHKVHSFDLVAP-------------N-PRVTA----CDIA-NVPLEDESVDVAVF 128 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S--------EEEEESS-S-------------S-TTEEE----S-TT-S-S--TT-EEEEEE
T ss_pred CEEEEECCCchHHHHHhccc-----CceEEEeeccCC-------------C-CCEEE----ecCc-cCcCCCCceeEEEE
Confidence 36899999999987754432 346788885532 1 11211 1232 35556789999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
..+|+.-. ..+-+.-..++++ +||.|.|+|-.+.
T Consensus 129 cLSLMGTn-~~~fi~EA~RvLK-~~G~L~IAEV~SR 162 (219)
T PF05148_consen 129 CLSLMGTN-WPDFIREANRVLK-PGGILKIAEVKSR 162 (219)
T ss_dssp ES---SS--HHHHHHHHHHHEE-EEEEEEEEEEGGG
T ss_pred EhhhhCCC-cHHHHHHHHheec-cCcEEEEEEeccc
Confidence 99999874 5554444445554 6999999997653
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.73 Score=47.09 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=63.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
...++||+||+||..++.+.+. ..+|++||.++ | +..+... +.+...... .+. ..+ ..+.+|+|+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r----G~~V~AVD~g~-l---~~~L~~~-~~V~h~~~d----~fr-~~p-~~~~vDwvV 275 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR----GMFVTAVDNGP-M---AQSLMDT-GQVEHLRAD----GFK-FRP-PRKNVDWLV 275 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc----CCEEEEEechh-c---CHhhhCC-CCEEEEecc----Ccc-cCC-CCCCCCEEE
Confidence 4689999999999999998873 45999999554 2 2233322 222111110 111 112 256799999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
|--+. .+.....++...+.. ....++-+----..-|+.+.+..+.|
T Consensus 276 cDmve----~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i 323 (357)
T PRK11760 276 CDMVE----KPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELI 323 (357)
T ss_pred Eeccc----CHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 87552 244445566665543 22344444444455677676666654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.16 Score=57.15 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=49.1
Q ss_pred CCeEEEECCchhHHHHHHHHh------------CC-----C-----------------------CccEEEEEeCCHHHHH
Q 012511 93 PAKVLDFGAGTGSAFWALREV------------WP-----R-----------------------SLEKVNLVEPSQSMQR 132 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~------------~~-----~-----------------------~~~~v~~VD~S~~ml~ 132 (462)
...++|-+||+||.+..++.. |+ . ...+++|+|+++.|++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 478999999999998765442 11 0 0126999999999999
Q ss_pred HHHHhhcCCCCCCceecchhHhhhhh-ccCCCCCcccEEEec
Q 012511 133 AGQSLMQGPKDLPLIHSYNSIQALNK-DISKSEREHDLVIAS 173 (462)
Q Consensus 133 ~Ak~ll~~~~~~~~i~~~~~~~~l~~-~l~~~~~~fDLVias 173 (462)
.|+.++...+-...+.. ...++.. ..+...++||+||++
T Consensus 271 ~A~~N~~~~g~~~~i~~--~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 271 AARKNARRAGVAELITF--EVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred HHHHHHHHcCCCcceEE--EeCChhhcccccccCCCCEEEEC
Confidence 99999875432111110 0112221 111123579999987
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.062 Score=50.65 Aligned_cols=105 Identities=11% Similarity=0.137 Sum_probs=62.4
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc--CCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ--GPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~--~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
-+||+|||.|..+.+++...|+ ..++|||++...+..+...+. +..|+.+++.... ..+...+ .+++.|-|..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~-~~l~~~~--~~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAR-ELLRRLF--PPGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CT-THHHHHS--TTTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHH-HHHhhcc--cCCchheEEE
Confidence 8999999999999999988874 689999999998887766554 3445544443211 1122112 3467777766
Q ss_pred cccccCCCCH--------HHHHHHHHHHHhcCCCEEEEEec
Q 012511 173 SYVLGEVPSL--------QDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 173 s~vL~el~~~--------~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
.|-==+.... ..-+..+.++++ +||.|.+.-.
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~-~gG~l~~~TD 134 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLK-PGGELYFATD 134 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEE-EEEEEEEEES
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcC-CCCEEEEEeC
Confidence 5432222111 122345555554 6999988543
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.27 Score=49.17 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=64.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
+.++|||+=|=||.++.+++.- ...+|+.||.|..+++.|++.+.-.+ ...++... -...+.. +. ..++|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g---GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~D-vf~~l~~-~~-~~~~f 196 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG---GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGD-VFKFLKR-LK-KGGRF 196 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT---TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES--HHHHHHH-HH-HTT-E
T ss_pred CCCceEEecCCCCHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecC-HHHHHHH-Hh-cCCCC
Confidence 3579999999999888876651 34689999999999999999875222 11222211 1111221 21 23589
Q ss_pred cEEEe---cccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCchH
Q 012511 168 DLVIA---SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 168 DLVia---s~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~ 212 (462)
|+||+ ++.=....-...-..++..+.+. +||.|++.-.....+.+
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHH
Confidence 99997 33322221111223455555554 69998877665554544
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.42 Score=49.66 Aligned_cols=98 Identities=7% Similarity=0.037 Sum_probs=59.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
+.+|||+-||+|.....++...+ ...+|+++|.|+..++.++++++... +...+.. +....+.....+||+|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~-ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~-----Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIE-GVREVFANDINPKAVESIKNNVEYNSVENIEVPNE-----DAANVLRYRNRKFHVI 118 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEch-----hHHHHHHHhCCCCCEE
Confidence 46899999999988776665432 24689999999999999998875432 1222221 1211121123579999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhc--CCCEEEEE
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 203 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlV 203 (462)
..-- . . ++.. ++..+.+. .+|.|.+.
T Consensus 119 dlDP-f-G--s~~~---fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDP-F-G--TPAP---FVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCC-C-C--CcHH---HHHHHHHhcccCCEEEEE
Confidence 7643 2 2 2222 33333322 47888775
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.051 Score=52.91 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=56.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.|.+|||+|||.=-++.-... ++ ....|++.|++..++++....+.-.+ .+.- ..+.++-.. ......|+.+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~-~~-~~a~Y~a~DID~~~ve~l~~~l~~l~-~~~~---~~v~Dl~~~--~~~~~~DlaL 176 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMP-EA-PGATYIAYDIDSQLVEFLNAFLAVLG-VPHD---ARVRDLLSD--PPKEPADLAL 176 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTT-SS-TT-EEEEEESBHHHHHHHHHHHHHTT--CEE---EEEE-TTTS--HTTSEESEEE
T ss_pred CCchhhhhhccCCceehhhcc-cC-CCcEEEEEeCCHHHHHHHHHHHHhhC-CCcc---eeEeeeecc--CCCCCcchhh
Confidence 378999999995433322222 11 24699999999999999988775432 1110 001122211 2456789999
Q ss_pred ecccccCCCCHHHH---HHHHHHHHhcCCCEEEEEecCCCCch
Q 012511 172 ASYVLGEVPSLQDR---ITIVRQLWDLTRDVLVLVEPGTPQGS 211 (462)
Q Consensus 172 as~vL~el~~~~~r---~~~i~~Lw~~~gG~LVlVEpGtp~Gf 211 (462)
.--+|+-|. ...+ +++|+.+ ..-.+|+-.|-...|.
T Consensus 177 llK~lp~le-~q~~g~g~~ll~~~---~~~~~vVSfPtrSL~g 215 (251)
T PF07091_consen 177 LLKTLPCLE-RQRRGAGLELLDAL---RSPHVVVSFPTRSLGG 215 (251)
T ss_dssp EET-HHHHH-HHSTTHHHHHHHHS---CESEEEEEEES-----
T ss_pred HHHHHHHHH-HHhcchHHHHHHHh---CCCeEEEecccccccc
Confidence 887777773 2222 3334433 3446666666444443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.29 Score=46.90 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=57.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC-CceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~-~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+||-+|+.+||..-.+++..+ ....|.+|+.|+.+.+-.-.+.+.-.|+ |.+.....-..+. ..-+..|+|
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg-~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~----~lv~~VDvI 147 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVG-PDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYR----MLVEMVDVI 147 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGT----TTS--EEEE
T ss_pred CCCEEEEecccCCCccchhhhccC-CCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhh----cccccccEE
Confidence 347999999999999999999876 3568999999996544333444333443 4443211001111 123478888
Q ss_pred EecccccCCCCHHHHHHHH---HHHHhcCCCEEEEEe
Q 012511 171 IASYVLGEVPSLQDRITIV---RQLWDLTRDVLVLVE 204 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i---~~Lw~~~gG~LVlVE 204 (462)
++--. .+++...++ +.+++ +||.++|+=
T Consensus 148 ~~DVa-----Qp~Qa~I~~~Na~~fLk-~gG~~~i~i 178 (229)
T PF01269_consen 148 FQDVA-----QPDQARIAALNARHFLK-PGGHLIISI 178 (229)
T ss_dssp EEE-S-----STTHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred EecCC-----ChHHHHHHHHHHHhhcc-CCcEEEEEE
Confidence 76533 233322222 23344 688888764
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.061 Score=53.13 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=66.8
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
...+||+|||.|-.+- .....-+++.|.+...+..++..=. .+.. +.+.. .+|..+..||.+++
T Consensus 46 gsv~~d~gCGngky~~------~~p~~~~ig~D~c~~l~~~ak~~~~--~~~~-------~ad~l-~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG------VNPLCLIIGCDLCTGLLGGAKRSGG--DNVC-------RADAL-KLPFREESFDAALS 109 (293)
T ss_pred cceeeecccCCcccCc------CCCcceeeecchhhhhccccccCCC--ceee-------hhhhh-cCCCCCCccccchh
Confidence 4689999999986431 1123468899999988877764211 0111 11111 35666789999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--CCCEEEEEe
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVE 204 (462)
.-++|||.+...|..+++.+.+. +||..++--
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999999888888888888875 788666543
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.17 Score=49.39 Aligned_cols=109 Identities=19% Similarity=0.153 Sum_probs=63.7
Q ss_pred HCCCCC--CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC------CC-CCCceecchhHhhhh
Q 012511 87 RLPGFS--PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG------PK-DLPLIHSYNSIQALN 157 (462)
Q Consensus 87 rlp~~~--p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~------~~-~~~~i~~~~~~~~l~ 157 (462)
.+++|+ +.+||++|+|+|....+++-.+ ..+|+..|....+......+..+ .+ ++. +.. ..|....
T Consensus 79 ~~~g~~~~~~~vlELGsGtglvG~~aa~~~---~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~-v~~-L~Wg~~~ 153 (248)
T KOG2793|consen 79 TLIGFKTKYINVLELGSGTGLVGILAALLL---GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVI-VAI-LVWGNAL 153 (248)
T ss_pred ccccccccceeEEEecCCccHHHHHHHHHh---cceeccCCchhhHHHHHHhhhhhhhhhhhcCCcee-EEE-EecCCcc
Confidence 455554 6789999999996555444433 34788888777665544332221 11 111 111 0111100
Q ss_pred hccCCCCCc-ccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 158 KDISKSERE-HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 158 ~~l~~~~~~-fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
. ...-... +|+|+++-++-+....+.....+..|+.. ++.+.+
T Consensus 154 ~-~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~-~~~i~l 197 (248)
T KOG2793|consen 154 D-VSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAK-DGTIFL 197 (248)
T ss_pred c-HhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhc-CCeEEE
Confidence 0 0011123 99999999999988888888888888875 554333
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.21 Score=50.15 Aligned_cols=119 Identities=24% Similarity=0.349 Sum_probs=64.7
Q ss_pred CeEEEECCchhHHHHHHHHhCC----C--------------CccEEEEEeCCH--HHHHHHHHhhcCCC---------CC
Q 012511 94 AKVLDFGAGTGSAFWALREVWP----R--------------SLEKVNLVEPSQ--SMQRAGQSLMQGPK---------DL 144 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~----~--------------~~~~v~~VD~S~--~ml~~Ak~ll~~~~---------~~ 144 (462)
.+||-||.|.|+-+.|++.+|. . ....+++||+.+ ..++.-..-+...+ +.
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 6999999999988888888881 1 114899999876 23332222222210 00
Q ss_pred Ccee-----cchhHhhhhh----ccC--CCCCcccEEEecccccCCCCHH--HHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 145 PLIH-----SYNSIQALNK----DIS--KSEREHDLVIASYVLGEVPSLQ--DRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 145 ~~i~-----~~~~~~~l~~----~l~--~~~~~fDLVias~vL~el~~~~--~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
+.+. ..+...++-. .+. ......+||+.-|+|+||-+.. +-..++.+|-.. +|-.|+||| +|.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD--SpG 245 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD--SPG 245 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc--CCC
Confidence 0000 0000111100 000 0112579999999999996433 334455555543 566777777 455
Q ss_pred chHHH
Q 012511 210 GSSII 214 (462)
Q Consensus 210 Gf~~I 214 (462)
.|..|
T Consensus 246 SYS~~ 250 (315)
T PF11312_consen 246 SYSEI 250 (315)
T ss_pred Cchhe
Confidence 56544
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.9 Score=47.44 Aligned_cols=113 Identities=16% Similarity=0.069 Sum_probs=66.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC----CCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD----LPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~----~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+++|||+=|=||.++.+++.- .-.+||.||.|...++.|+++++-.+. ..++... -...+.. ......+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~D-vf~~l~~-~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGD-VFKWLRK-AERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhh-HHHHHHH-HHhcCCcc
Confidence 3689999999999998877751 245999999999999999998753321 1122211 1112221 22234599
Q ss_pred cEEEec---ccccCCC--CH----HHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 168 DLVIAS---YVLGEVP--SL----QDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 168 DLVias---~vL~el~--~~----~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
||||.- ++=+.-. +. ........++++ +||.|++.--.....
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pgG~l~~~s~~~~~~ 342 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PGGTLVTSSCSRHFS 342 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcC-CCCEEEEEecCCccC
Confidence 999872 2211111 10 112223334443 799999876555443
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.25 Score=50.33 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=65.0
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
+..|||==||||+.+..+.- + ...++|.|++..|++-|+.+++.+. ..+.... .+. ..+|....++|-|
T Consensus 198 G~~vlDPFcGTGgiLiEagl-~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~----~Da-~~lpl~~~~vdaI 268 (347)
T COG1041 198 GELVLDPFCGTGGILIEAGL-M---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKV----LDA-TNLPLRDNSVDAI 268 (347)
T ss_pred CCEeecCcCCccHHHHhhhh-c---CceEeecchHHHHHhhhhhhhhhhCcCceeEEEe----ccc-ccCCCCCCccceE
Confidence 36999999999998887653 3 4689999999999999999998764 1111211 111 2345444569988
Q ss_pred Eec--ccccC-CC--C----HHHHHHHHHHHHhcCCCEEEEEec
Q 012511 171 IAS--YVLGE-VP--S----LQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 171 ias--~vL~e-l~--~----~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
++- |--.. .. . ..+.++.+..+++ +||++|+.-|
T Consensus 269 atDPPYGrst~~~~~~l~~Ly~~~le~~~evLk-~gG~~vf~~p 311 (347)
T COG1041 269 ATDPPYGRSTKIKGEGLDELYEEALESASEVLK-PGGRIVFAAP 311 (347)
T ss_pred EecCCCCcccccccccHHHHHHHHHHHHHHHhh-cCcEEEEecC
Confidence 763 22111 11 0 1122334444443 5999999877
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.24 Score=47.38 Aligned_cols=96 Identities=18% Similarity=0.272 Sum_probs=55.5
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCc-ccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSERE-HDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~-fDL 169 (462)
+.+++|+|+|+|--..-++=.+|+ .+++.+|+...=+..-+.+....+ |+..++.. ..++. ...+ ||+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~--~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~R--aE~~~-----~~~~~~D~ 138 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPD--LKVTLLESLGKKIAFLREVKKELGLENVEIVHGR--AEEFG-----QEKKQYDV 138 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccC--CcEEEEccCchHHHHHHHHHHHhCCCCeEEehhh--Hhhcc-----cccccCcE
Confidence 689999999998444333334553 459999999876666666555432 33333211 12221 1223 999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|++- .+..+ ....++...+.+ .||.++.
T Consensus 139 vtsR-Ava~L---~~l~e~~~pllk-~~g~~~~ 166 (215)
T COG0357 139 VTSR-AVASL---NVLLELCLPLLK-VGGGFLA 166 (215)
T ss_pred EEee-hccch---HHHHHHHHHhcc-cCCcchh
Confidence 8875 33333 334456666665 4666653
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=1.8 Score=42.28 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=82.4
Q ss_pred HhcCchhHH-----HHHH-HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCC--CccEEEEEeCCHHHHHH-HHHh
Q 012511 67 ASRMPAVYS-----ACYR-VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPR--SLEKVNLVEPSQSMQRA-GQSL 137 (462)
Q Consensus 67 a~r~p~~Ya-----~~~~-vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~--~~~~v~~VD~S~~ml~~-Ak~l 137 (462)
..++|..|. ++.+ .-.||....+ +-+++|+|+|+.+=+..+.+.+.. +..+|+.||+|...++. |+.+
T Consensus 50 I~~LPEYYpTRtEaaIl~~~a~Eia~~~g---~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai 126 (321)
T COG4301 50 ITRLPEYYPTRTEAAILQARAAEIASITG---ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAI 126 (321)
T ss_pred HhccccccCchhHHHHHHHHHHHHHHhhC---cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHH
Confidence 556666553 2333 2356666544 579999999998776666555432 45799999999998875 6677
Q ss_pred hcCCCCCCceecchhHhhhhh---ccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE-EecCC
Q 012511 138 MQGPKDLPLIHSYNSIQALNK---DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL-VEPGT 207 (462)
Q Consensus 138 l~~~~~~~~i~~~~~~~~l~~---~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl-VEpGt 207 (462)
+.....++.... ..++.. .++ ..+.-=+++...+|..+. +.++..++.++-.. ||.+++| |+.-.
T Consensus 127 ~~~y~~l~v~~l---~~~~~~~La~~~-~~~~Rl~~flGStlGN~t-p~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 127 LREYPGLEVNAL---CGDYELALAELP-RGGRRLFVFLGSTLGNLT-PGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred HHhCCCCeEeeh---hhhHHHHHhccc-CCCeEEEEEecccccCCC-hHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 777666553221 112221 122 112223456788999995 77777777766553 6777766 44433
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.61 Score=50.45 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=65.7
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC--CCCCCceecchhHhhhhhccCCCCCcc
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKDLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~--~~~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
+.....+||+|||.|..+..++...|+ ..++|||.+..-+..+...+.. ..|+.++... ...+...+ ...+.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~--~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~--~~~~~~~~--~~~sv 418 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPD--ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNN--LDLILNDL--PNNSL 418 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHhc--Ccccc
Confidence 334568999999999999999988875 5799999999876665554432 3343333221 11222222 35678
Q ss_pred cEEEecccccCCCCH--H------HHHHHHHHHHhcCCCEEEEEe
Q 012511 168 DLVIASYVLGEVPSL--Q------DRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 168 DLVias~vL~el~~~--~------~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|-|...|-==+.... + +.+..+..+++ +||.+-+.-
T Consensus 419 ~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk-~gG~i~~~T 462 (506)
T PRK01544 419 DGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLK-DNGNLVFAS 462 (506)
T ss_pred cEEEEECCCCCCCCCCccccccCHHHHHHHHHhcC-CCCEEEEEc
Confidence 888766543332211 1 22345555554 699998854
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.4 Score=49.08 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=50.4
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHH--HhhcCCC----CCCceecc--hhHhhhhhccCCCCC
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQ--SLMQGPK----DLPLIHSY--NSIQALNKDISKSER 165 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak--~ll~~~~----~~~~i~~~--~~~~~l~~~l~~~~~ 165 (462)
.+||=+|.|.|.++..+.+ +| ...+++.||.+|.|++.++ ..++..+ ..|.++.+ +-.+.+. ....
T Consensus 291 ~~vLvlGGGDGLAlRellk-yP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr----~a~~ 364 (508)
T COG4262 291 RSVLVLGGGDGLALRELLK-YP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLR----TAAD 364 (508)
T ss_pred ceEEEEcCCchHHHHHHHh-CC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHH----hhcc
Confidence 6999999999999988887 55 4789999999999999998 3343221 12444321 1112222 2345
Q ss_pred cccEEEec
Q 012511 166 EHDLVIAS 173 (462)
Q Consensus 166 ~fDLVias 173 (462)
.||.||.-
T Consensus 365 ~fD~vIVD 372 (508)
T COG4262 365 MFDVVIVD 372 (508)
T ss_pred cccEEEEe
Confidence 89999864
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.59 Score=45.77 Aligned_cols=100 Identities=17% Similarity=0.263 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhh
Q 012511 77 CYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQAL 156 (462)
Q Consensus 77 ~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l 156 (462)
+-.++..|+.| | ....|-|+|||-+-.+. . ....|...|.-+. +..++. .++
T Consensus 168 ld~ii~~ik~r-~--~~~vIaD~GCGEakiA~---~----~~~kV~SfDL~a~-------------~~~V~~-----cDm 219 (325)
T KOG3045|consen 168 LDVIIRKIKRR-P--KNIVIADFGCGEAKIAS---S----ERHKVHSFDLVAV-------------NERVIA-----CDM 219 (325)
T ss_pred HHHHHHHHHhC-c--CceEEEecccchhhhhh---c----cccceeeeeeecC-------------CCceee-----ccc
Confidence 33455666655 3 23689999999876543 1 2346777774321 111111 123
Q ss_pred hhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 157 NKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 157 ~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
. .+|..+++.|++|+..+|+.- +..+-+.-..++++ +||.|-|.|-.+
T Consensus 220 ~-~vPl~d~svDvaV~CLSLMgt-n~~df~kEa~RiLk-~gG~l~IAEv~S 267 (325)
T KOG3045|consen 220 R-NVPLEDESVDVAVFCLSLMGT-NLADFIKEANRILK-PGGLLYIAEVKS 267 (325)
T ss_pred c-CCcCccCcccEEEeeHhhhcc-cHHHHHHHHHHHhc-cCceEEEEehhh
Confidence 3 256678899999999888876 46666666677776 699999999754
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.23 Score=46.27 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=34.9
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhh
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 138 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll 138 (462)
..+.|+|+|+|..+..+++. ..+|++|+.++..-+.|++.+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~----A~rViAiE~dPk~a~~a~eN~ 74 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA----AERVIAIEKDPKRARLAEENL 74 (252)
T ss_pred hceeeccCCcchHHHHHHhh----hceEEEEecCcHHHHHhhhcC
Confidence 58999999999887766653 468999999999999998875
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.2 Score=42.30 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=35.8
Q ss_pred HHHHHHHCCCCCC-CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCH
Q 012511 81 LCEVRRRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 128 (462)
Q Consensus 81 L~eL~~rlp~~~p-~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~ 128 (462)
|.||..+..-+++ ..|+|+||-||..+-.++...+. ...|++||+-+
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~-~~~ivavDi~p 80 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGA-GGKIVAVDILP 80 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCC-CCcEEEEECcc
Confidence 5566666654444 89999999999999888877653 44599999876
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.61 E-value=2.4 Score=39.69 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=63.1
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
....++||+=+|+|+....+... ....++.||.+.......+++++.... ...+.... ...+. .+ ....+|
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR---GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da-~~~L~-~~-~~~~~F 115 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR---GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDA-LRALK-QL-GTREPF 115 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC---CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecH-HHHHH-hc-CCCCcc
Confidence 55689999999999877765542 357899999999999999888776542 12222211 11111 11 122359
Q ss_pred cEEEeccccc-CCCCHHHHHHH-HHHHHhcCCCEEEEEecCCC
Q 012511 168 DLVIASYVLG-EVPSLQDRITI-VRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 168 DLVias~vL~-el~~~~~r~~~-i~~Lw~~~gG~LVlVEpGtp 208 (462)
|+|+.-==.+ .+-+....+.. ...-| ...+.+|++|....
T Consensus 116 DlVflDPPy~~~l~~~~~~~~~~~~~~~-L~~~~~iv~E~~~~ 157 (187)
T COG0742 116 DLVFLDPPYAKGLLDKELALLLLEENGW-LKPGALIVVEHDKD 157 (187)
T ss_pred cEEEeCCCCccchhhHHHHHHHHHhcCC-cCCCcEEEEEeCCC
Confidence 9998742222 22111211111 12222 13567777887643
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=92.55 E-value=2 Score=40.91 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=61.9
Q ss_pred EEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhh-hhhccCCCCCcccEEEecc
Q 012511 96 VLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQA-LNKDISKSEREHDLVIASY 174 (462)
Q Consensus 96 VLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~-l~~~l~~~~~~fDLVias~ 174 (462)
|.|+||--|....++.+. ....+++++|+++.-++.|++.+...+....+... ..+ +. .++ +....|.||.+-
T Consensus 1 vaDIGtDHgyLpi~L~~~--~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~r--lgdGL~-~l~-~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN--GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVR--LGDGLE-VLK-PGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHT--TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEE--E-SGGG-G---GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEE--ECCccc-ccC-CCCCCCEEEEec
Confidence 689999999988887763 13568999999999999999988765422222211 011 11 121 122367777766
Q ss_pred cccCCCCHHHHHHHHHHHHhc-C-CCEEEEEecCCCCchHHHHHHHHHHHH
Q 012511 175 VLGEVPSLQDRITIVRQLWDL-T-RDVLVLVEPGTPQGSSIISQMRSHILW 223 (462)
Q Consensus 175 vL~el~~~~~r~~~i~~Lw~~-~-gG~LVlVEpGtp~Gf~~I~~aR~~lL~ 223 (462)
+ .......++.+.... . ...||| -|-+ ....+|.++..
T Consensus 75 M-----GG~lI~~ILe~~~~~~~~~~~lIL-qP~~-----~~~~LR~~L~~ 114 (205)
T PF04816_consen 75 M-----GGELIIEILEAGPEKLSSAKRLIL-QPNT-----HAYELRRWLYE 114 (205)
T ss_dssp E------HHHHHHHHHHTGGGGTT--EEEE-EESS------HHHHHHHHHH
T ss_pred C-----CHHHHHHHHHhhHHHhccCCeEEE-eCCC-----ChHHHHHHHHH
Confidence 5 233344555554433 2 235555 4433 34567999763
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.6 Score=45.60 Aligned_cols=81 Identities=15% Similarity=0.285 Sum_probs=51.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCC------ccEEEEEeCCHHHHHHHHHhhcCCC----CCC-ceecchhHhhhhhcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRS------LEKVNLVEPSQSMQRAGQSLMQGPK----DLP-LIHSYNSIQALNKDI 160 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~------~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~-~i~~~~~~~~l~~~l 160 (462)
.+.+|+++|+|.|+++..+.+.+... ..+|+.||.|+.|.+.-++.+.... ... .+. +..+ +
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~---w~~~----l 90 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIR---WLDD----L 90 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEE---EESS----G
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccc---hhhh----h
Confidence 35799999999999998888776532 2589999999999999888886521 111 111 1111 2
Q ss_pred CCCCCcccEEEecccccCCC
Q 012511 161 SKSEREHDLVIASYVLGEVP 180 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~ 180 (462)
+... ..-+||++-+|.-||
T Consensus 91 ~~~p-~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 91 EEVP-FPGFIIANELFDALP 109 (252)
T ss_dssp GCS--CCEEEEEESSGGGS-
T ss_pred hccc-CCEEEEEeeehhcCc
Confidence 1111 345788888999887
|
; PDB: 4F3N_A 1ZKD_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.03 E-value=1.2 Score=45.86 Aligned_cols=51 Identities=20% Similarity=0.116 Sum_probs=41.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
.+.+|||+.++||.=+-++++...+....|+++|.|+.-++..+++++..+
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG 206 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG 206 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC
Confidence 347999999999987777777776444567999999999888888887654
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.81 Score=40.82 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=57.8
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcccEEEecccccCCCCH--------HHHHHH
Q 012511 120 KVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSL--------QDRITI 188 (462)
Q Consensus 120 ~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~--------~~r~~~ 188 (462)
+|.+.|+=+++++.+++++++... +.+++ .+...+...++ .++.|+||.+ |.+||.. +.-+..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~--~sHe~l~~~i~--~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLIL--DSHENLDEYIP--EGPVDAAIFN--LGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEE--S-GGGGGGT----S--EEEEEEE--ESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEE--CCHHHHHhhCc--cCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHH
Confidence 589999999999999999976532 22232 12233433332 2478888865 5777743 234456
Q ss_pred HHHHHhc--CCCEEEEE-ecCCCCchHHHHHHHHHHH
Q 012511 189 VRQLWDL--TRDVLVLV-EPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 189 i~~Lw~~--~gG~LVlV-EpGtp~Gf~~I~~aR~~lL 222 (462)
++..++. +||.++|+ =+|.+.|.+--..+.+++-
T Consensus 75 l~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~ 111 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLA 111 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6666654 68887665 6899999877666666653
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.72 E-value=1.1 Score=45.96 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=43.1
Q ss_pred HHHCCCCCCCeEEEECCchhHHHHHHHHhC----CC--CccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 85 RRRLPGFSPAKVLDFGAGTGSAFWALREVW----PR--SLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 85 ~~rlp~~~p~rVLDvG~G~G~~~~al~~~~----~~--~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
-.+++...|..|+++|+|.|+.+.-+.... |+ ...+|..||+|++..+.=++.+++..
T Consensus 70 wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 70 WQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred HHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 334455567899999999999876544432 21 24689999999999999888888754
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.31 E-value=2 Score=43.45 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=64.0
Q ss_pred CCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC--CCCCcccE
Q 012511 93 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS--KSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~--~~~~~fDL 169 (462)
+.+||=+|+|| |..+...++.++ ..+|+.+|.++.-++.|++ +....-.+.-+. .+.+.+...+. .....+|.
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~G--A~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~-~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMG--ASDVVITDLVANRLELAKK-FGATVTDPSSHK-SSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcC--CCcEEEeecCHHHHHHHHH-hCCeEEeecccc-ccHHHHHHHHHhhccccCCCe
Confidence 47999999997 777777777786 4689999999999999998 432111111110 11222221111 12345788
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC-chH
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ-GSS 212 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~-Gf~ 212 (462)
.+-.--++-- . ...|..+ +.+|++|++.-|.+. -|.
T Consensus 246 ~~dCsG~~~~--~---~aai~a~--r~gGt~vlvg~g~~~~~fp 282 (354)
T KOG0024|consen 246 TFDCSGAEVT--I---RAAIKAT--RSGGTVVLVGMGAEEIQFP 282 (354)
T ss_pred EEEccCchHH--H---HHHHHHh--ccCCEEEEeccCCCccccC
Confidence 7754332221 1 1123222 259999999988754 343
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.34 Score=51.58 Aligned_cols=44 Identities=27% Similarity=0.219 Sum_probs=38.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
...+||+-||||+...+++. ....|++|+.++..+..|+..++.
T Consensus 384 ~k~llDv~CGTG~iglala~----~~~~ViGvEi~~~aV~dA~~nA~~ 427 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALAR----GVKRVIGVEISPDAVEDAEKNAQI 427 (534)
T ss_pred CcEEEEEeecCCceehhhhc----cccceeeeecChhhcchhhhcchh
Confidence 47899999999999999887 467899999999999999876653
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.56 E-value=0.84 Score=47.24 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=51.7
Q ss_pred CCCCC-CeEEEECCchhHHHHHHHHhCCC-------------------------------------CccEEEEEeCCHHH
Q 012511 89 PGFSP-AKVLDFGAGTGSAFWALREVWPR-------------------------------------SLEKVNLVEPSQSM 130 (462)
Q Consensus 89 p~~~p-~rVLDvG~G~G~~~~al~~~~~~-------------------------------------~~~~v~~VD~S~~m 130 (462)
.+|.+ ..++|==||+||.+..++-.-.+ ....++|+|+++.|
T Consensus 187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 45655 48999999999988755433210 00137799999999
Q ss_pred HHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEec
Q 012511 131 QRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 173 (462)
Q Consensus 131 l~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias 173 (462)
++.|+.++++.+-...+.. ...++. .+......+|+||++
T Consensus 267 i~~Ak~NA~~AGv~d~I~f--~~~d~~-~l~~~~~~~gvvI~N 306 (381)
T COG0116 267 IEGAKANARAAGVGDLIEF--KQADAT-DLKEPLEEYGVVISN 306 (381)
T ss_pred HHHHHHHHHhcCCCceEEE--EEcchh-hCCCCCCcCCEEEeC
Confidence 9999999877542222221 111222 232222689999997
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.2 Score=45.96 Aligned_cols=64 Identities=27% Similarity=0.242 Sum_probs=47.4
Q ss_pred chhHHHHHHHHHHHHHHCCCCCC-CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 71 PAVYSACYRVLCEVRRRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 71 p~~Ya~~~~vL~eL~~rlp~~~p-~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
-..|..-.++|.||...+.+|.+ ..|.|+|+|.|..+..+.=. ....|.+||.|....+.|+.+
T Consensus 131 ~~k~qhEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~---y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 131 RPKKQHEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG---YGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc---cCceEEEeccchHHHHHHHHH
Confidence 34455556678888777766654 69999999999987766532 246899999998887777654
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.62 Score=44.12 Aligned_cols=76 Identities=18% Similarity=0.075 Sum_probs=43.7
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
..+|||.-||-|.++..++..- ....|+++|.++...+..++.++-..-...+... ..+... +. ....+|-|++
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~--~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~--~~D~~~-~~-~~~~~drvim 175 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHG--KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVI--NGDARE-FL-PEGKFDRVIM 175 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT---SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEE--ES-GGG-----TT-EEEEEE
T ss_pred ceEEEEccCCccHHHHHHhhhc--CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEE--cCCHHH-hc-CccccCEEEE
Confidence 4799999999999888877642 3568999999999999888776532211111110 012221 21 1678998887
Q ss_pred cc
Q 012511 173 SY 174 (462)
Q Consensus 173 s~ 174 (462)
++
T Consensus 176 ~l 177 (200)
T PF02475_consen 176 NL 177 (200)
T ss_dssp --
T ss_pred CC
Confidence 65
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=90.23 E-value=2.3 Score=42.99 Aligned_cols=67 Identities=18% Similarity=0.101 Sum_probs=49.0
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceec
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHS 149 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~ 149 (462)
|.|+...+....+..++|.=+|.|.-+.++++..+. .+|+++|.++.+++.|++.+.... .+.+++.
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~--g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~ 76 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT--GRLIGIDRDPQAIAFAKERLSDFEGRVVLIHD 76 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeC
Confidence 444444443223468999999999888888887763 789999999999999999887543 3344443
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.84 Score=48.64 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=66.5
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
-..|+|..+|.|.++-|+.+. ..-|.-|-++... +...-++.. +.+...| ++.+.++.-+.+||||-+
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~----~VWVMNVVP~~~~-ntL~vIydR-GLIG~yh------DWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD----PVWVMNVVPVSGP-NTLPVIYDR-GLIGVYH------DWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred eeeeeeecccccHHHHHhccC----CceEEEecccCCC-Ccchhhhhc-ccchhcc------chhhccCCCCcchhheeh
Confidence 468999999999998888751 1122222222110 000111111 1122222 234444445689999999
Q ss_pred cccccCCCC---HHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 173 SYVLGEVPS---LQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 173 s~vL~el~~---~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
++++....+ .+..+--+.++++ |+|.+||=+ ....|.+++.++-
T Consensus 434 ~~lfs~~~~rC~~~~illEmDRILR-P~G~~iiRD-----~~~vl~~v~~i~~ 480 (506)
T PF03141_consen 434 DGLFSLYKDRCEMEDILLEMDRILR-PGGWVIIRD-----TVDVLEKVKKIAK 480 (506)
T ss_pred hhhhhhhcccccHHHHHHHhHhhcC-CCceEEEec-----cHHHHHHHHHHHH
Confidence 999988764 3344556677776 799998855 4578888888654
|
; GO: 0008168 methyltransferase activity |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=89.40 E-value=1 Score=45.19 Aligned_cols=83 Identities=11% Similarity=0.094 Sum_probs=39.9
Q ss_pred CCeEEEECCchhHH-HHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC----CceecchhHhhhhhccCCCCCcc
Q 012511 93 PAKVLDFGAGTGSA-FWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL----PLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 93 p~rVLDvG~G~G~~-~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~----~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
..++||||+|.... .+.....+ .-+++|.|+++..++.|+++++..+++ .++.... -..+-..+......|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~---~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~-~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY---GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN-PDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S-T-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhc---CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC-ccccchhhhccccee
Confidence 46899999997532 22222222 247999999999999999988754222 2221110 011111222234589
Q ss_pred cEEEecccccCC
Q 012511 168 DLVIASYVLGEV 179 (462)
Q Consensus 168 DLVias~vL~el 179 (462)
|+.+|+-=++.-
T Consensus 179 dftmCNPPFy~s 190 (299)
T PF05971_consen 179 DFTMCNPPFYSS 190 (299)
T ss_dssp EEEEE-----SS
T ss_pred eEEecCCccccC
Confidence 999998666554
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.28 E-value=7.1 Score=40.32 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=35.1
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
...+||.+|||+ |..+..++...+ ..++++++.++++++.++++
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g--~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLG--AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHc
Confidence 457999999987 777777777654 24699999999999998875
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.90 E-value=0.83 Score=47.80 Aligned_cols=65 Identities=20% Similarity=0.164 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 74 YSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 74 Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
|+.+...+.|.++++.+ .-..|||+|.|||.++..+...- ...|++++.=..|.+.|+++..+.+
T Consensus 49 ~~gi~~tIte~kh~~~~-gkv~vLdigtGTGLLSmMAvrag---aD~vtA~EvfkPM~d~arkI~~kng 113 (636)
T KOG1501|consen 49 RLGIEKTITEPKHVLDI-GKVFVLDIGTGTGLLSMMAVRAG---ADSVTACEVFKPMVDLARKIMHKNG 113 (636)
T ss_pred HHHHHHHhcccceeccC-ceEEEEEccCCccHHHHHHHHhc---CCeEEeehhhchHHHHHHHHHhcCC
Confidence 44566677777776532 33589999999998776554432 3579999999999999999987643
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=87.88 E-value=1.1 Score=39.37 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=37.5
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+...++|+|+|++-|..++.+.- .....|+++++++.+.+..++.++.
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l---~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLL---RGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred eecCCEEEEecCCccchhhHHhh---cCccEEEEeccCHHHHHHHHHHhhh
Confidence 45678999999999976654432 1357899999999999999887654
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.42 E-value=1.5 Score=41.12 Aligned_cols=43 Identities=23% Similarity=0.104 Sum_probs=29.2
Q ss_pred HHHHHCCCCC-CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeC
Q 012511 83 EVRRRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEP 126 (462)
Q Consensus 83 eL~~rlp~~~-p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~ 126 (462)
||..+..-++ ..+|||+||-||+.+-.+.+.-. ....|.+||+
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~-p~g~v~gVDl 102 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVN-PNGMVLGVDL 102 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhC-CCceEEEEee
Confidence 4444443333 47999999999998876665442 3467888884
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.4 Score=42.12 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHC----CCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 77 CYRVLCEVRRRL----PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 77 ~~~vL~eL~~rl----p~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
-.++-.||..|. +...|.++-|=.||.|..+-.+.-..++.+..+.+-|++++++++|++++.
T Consensus 32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 345566666654 445678999999999977655544445567899999999999999998874
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.22 E-value=0.65 Score=41.74 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHH
Q 012511 71 PAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS 136 (462)
Q Consensus 71 p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ 136 (462)
|++-.++..||+-+.. .+..+.+|+|+|.|....+++.. .....++++.++=+..+++-
T Consensus 55 pAtteQv~nVLSll~~----n~~GklvDlGSGDGRiVlaaar~---g~~~a~GvELNpwLVaysrl 113 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRG----NPKGKLVDLGSGDGRIVLAAARC---GLRPAVGVELNPWLVAYSRL 113 (199)
T ss_pred CccHHHHHHHHHHccC----CCCCcEEeccCCCceeehhhhhh---CCCcCCceeccHHHHHHHHH
Confidence 4555566666665443 23479999999999988887763 24567999999998887764
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.12 E-value=7.3 Score=37.41 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=69.7
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC--CCCCcccEEE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS--KSEREHDLVI 171 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~--~~~~~fDLVi 171 (462)
.+|.|+||--|.....+..-- ....++++|.++..++.|...+...+..+.+... ....++ ..+..+|.|+
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~--~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr-----~~dgl~~l~~~d~~d~iv 90 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNN--PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVR-----LGDGLAVLELEDEIDVIV 90 (226)
T ss_pred CceeeccCchhHhHHHHHhcC--CcceEEEeecccCHHHHHHHHHHhcCCcceEEEe-----ccCCccccCccCCcCEEE
Confidence 459999999998877766532 3578999999999999999988876655554322 111232 1234688887
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCC--EEEEEecCCCCchHHHHHHHHHHH
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRD--VLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG--~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
.+.+ .......++.+..+.-.+ .||| -|.-. .-.+|+++.
T Consensus 91 IAGM-----GG~lI~~ILee~~~~l~~~~rlIL----QPn~~--~~~LR~~L~ 132 (226)
T COG2384 91 IAGM-----GGTLIREILEEGKEKLKGVERLIL----QPNIH--TYELREWLS 132 (226)
T ss_pred EeCC-----cHHHHHHHHHHhhhhhcCcceEEE----CCCCC--HHHHHHHHH
Confidence 6654 223334455555444333 5665 33322 346788875
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=86.91 E-value=9.9 Score=38.98 Aligned_cols=45 Identities=22% Similarity=0.167 Sum_probs=37.1
Q ss_pred CCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 93 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 93 p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
+.+|+=+|||| |.++.+++...+ ..+++++|.+++-+++|++...
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~G--a~~Viv~d~~~~Rl~~A~~~~g 214 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLG--ASVVIVVDRSPERLELAKEAGG 214 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCHHHHHHHHHhCC
Confidence 34999999997 777777777765 4689999999999999998543
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.89 E-value=2.5 Score=41.36 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=34.7
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+|||+=+|.|.-++.++.. ..+|++||.|+.+..+.+..++.
T Consensus 91 ~VLD~TAGlG~Da~~las~----G~~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV----GCRVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred EEEECCCCccHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHH
Confidence 8999999999988877763 44699999999988877766654
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.71 E-value=1.2 Score=46.02 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=70.3
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
+.+..++|+|||-|.....+... ....+++++.|+.-+..+........ +...+ -..++. ..++++..||
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f---~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~----~~~~~~-~~~fedn~fd 180 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF---KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNF----VVADFG-KMPFEDNTFD 180 (364)
T ss_pred cccccccccCcCcCchhHHHHHh---ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcce----ehhhhh-cCCCCccccC
Confidence 34457999999999877777654 34679999999977666655443211 11000 011222 2356789999
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
.+-+..+.-+.++...+.+-+-... +|||..+.-|
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~-kpGG~~i~~e 215 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVL-KPGGLFIVKE 215 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhccc-CCCceEEeHH
Confidence 9999999999998887655444443 3899988733
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.17 E-value=7.4 Score=36.97 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=42.7
Q ss_pred CCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC-Cce
Q 012511 88 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLI 147 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~-~~i 147 (462)
+|-....+||=+|+-+||..-.+.+.-+ ...+.+|+.|+.+....-.+++.-.|+ |.+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~--~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL 130 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVG--EGRIYAVEFSPRPMRELLDVAEKRPNIIPIL 130 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccC--CCcEEEEEecchhHHHHHHHHHhCCCceeee
Confidence 3444568999999999999989998876 357999999998765554555444444 443
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=85.57 E-value=2.7 Score=39.23 Aligned_cols=41 Identities=22% Similarity=0.107 Sum_probs=32.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHH
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS 136 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ 136 (462)
.+..|||.=||+||.+.|+.. ...+++++|++++..++|++
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~----l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEE----LGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHH----TT-EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHH----cCCeEEEEeCCHHHHHHhcC
Confidence 457999999999999988887 35689999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=84.30 E-value=3.4 Score=41.18 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=41.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
...+|||+.+|||.=+.++++.+.+ ...++++|.+..-+...+..++..+
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~-~g~i~A~D~~~~Rl~~l~~~~~r~g 134 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGN-KGEIVANDISPKRLKRLKENLKRLG 134 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTT-TSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccccccccccCCCCceeeeeecccc-hhHHHHhccCHHHHHHHHHHHHhcC
Confidence 3468999999999888888888763 5799999999999888888777654
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.90 E-value=9.8 Score=37.78 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=66.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhh-ccCCCCCccc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNK-DISKSEREHD 168 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~-~l~~~~~~fD 168 (462)
+.+||+-|.|.|.++.+++...+ ...+++-.|.-...-+.|.+-++.-. +..+++. ++.. .+......+|
T Consensus 106 GsvV~EsGTGSGSlShaiaraV~-ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hr-----DVc~~GF~~ks~~aD 179 (314)
T KOG2915|consen 106 GSVVLESGTGSGSLSHAIARAVA-PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHR-----DVCGSGFLIKSLKAD 179 (314)
T ss_pred CCEEEecCCCcchHHHHHHHhhC-cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEe-----ecccCCccccccccc
Confidence 46999999999999999888765 45788999997766666665554321 2222221 2211 1111234556
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
.| +..||.+...+-....+++..||+|+-+-|-
T Consensus 180 aV-----FLDlPaPw~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 180 AV-----FLDLPAPWEAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred eE-----EEcCCChhhhhhhhHHHhhhcCceEEeccHH
Confidence 54 4667778777766666777678899887654
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=83.85 E-value=0.66 Score=38.54 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=28.6
Q ss_pred EEECCchhHHHHHHHHhCCCCc-cEEEEEeCCHH---HHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 97 LDFGAGTGSAFWALREVWPRSL-EKVNLVEPSQS---MQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 97 LDvG~G~G~~~~al~~~~~~~~-~~v~~VD~S~~---ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
|++|+..|..+..+++.++... .+++++|..+. ..+..++.- -..++.++... +...+. .++ ..++|+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~-~~~~~~~~~g~-s~~~l~-~~~--~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAG-LSDRVEFIQGD-SPDFLP-SLP--DGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS------------GG-G-BTEEEEES--THHHHH-HHH--H--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcC-CCCeEEEEEcC-cHHHHH-HcC--CCCEEEEEE
Confidence 6899888866655555454322 37999999994 333333210 01122233221 111121 121 468999886
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
-- .| +.+.....+..++.. +||.+|+
T Consensus 76 Dg--~H--~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 76 DG--DH--SYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ES-------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CC--CC--CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 42 11 134455566777765 5666654
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=83.78 E-value=5.6 Score=39.96 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=53.0
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecc
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSY 150 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~ 150 (462)
+|.|+..-+..-.....+|.=-|.|.-+.++.+.++ ...+++++|..+.+++.|++++..+. .+.+++.+
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~-~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~ 81 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLP-DLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGN 81 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCC-CCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCc
Confidence 455555554333347899999999988999998887 46789999999999999999987644 45556544
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=83.45 E-value=13 Score=40.31 Aligned_cols=62 Identities=26% Similarity=0.268 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHCC-------CCCCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 73 VYSACYRVLCEVRRRLP-------GFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 73 ~Ya~~~~vL~eL~~rlp-------~~~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
.|.++......+.+-++ ...+.+||=+|||+ |..+..++..++ .+|+++|.+++-++.++.+
T Consensus 138 Gy~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lG---A~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 138 GYRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLG---AIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred HHHHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHc
Confidence 35555544444433222 23578999999996 667777777776 2699999999999998874
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.45 E-value=8.4 Score=39.51 Aligned_cols=125 Identities=14% Similarity=0.031 Sum_probs=74.1
Q ss_pred HhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCc
Q 012511 67 ASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPL 146 (462)
Q Consensus 67 a~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~ 146 (462)
+++.|.+..--.+++..+. .+.+|||.=||-|.++..++.. + ..+|+++|+|+...+..++.++-..-...
T Consensus 169 v~Fsprl~~ER~Rva~~v~------~GE~V~DmFAGVGpfsi~~Ak~-g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~ 239 (341)
T COG2520 169 VYFSPRLSTERARVAELVK------EGETVLDMFAGVGPFSIPIAKK-G--RPKVYAIDINPDAVEYLKENIRLNKVEGR 239 (341)
T ss_pred eEECCCchHHHHHHHhhhc------CCCEEEEccCCcccchhhhhhc-C--CceEEEEecCHHHHHHHHHHHHhcCccce
Confidence 4555666555555554332 2579999999999988887763 2 23499999999999999988753321111
Q ss_pred eecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 147 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 147 i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
+... ..+... +......+|-||+++.-.-..-... .+..+. .+|.+..-+...-
T Consensus 240 v~~i--~gD~re-v~~~~~~aDrIim~~p~~a~~fl~~---A~~~~k--~~g~iHyy~~~~e 293 (341)
T COG2520 240 VEPI--LGDARE-VAPELGVADRIIMGLPKSAHEFLPL---ALELLK--DGGIIHYYEFVPE 293 (341)
T ss_pred eeEE--eccHHH-hhhccccCCEEEeCCCCcchhhHHH---HHHHhh--cCcEEEEEeccch
Confidence 1100 111211 1222267999998876532211111 233333 3899988876553
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.92 E-value=3 Score=40.45 Aligned_cols=126 Identities=16% Similarity=0.149 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecch
Q 012511 72 AVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYN 151 (462)
Q Consensus 72 ~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~ 151 (462)
..+-.+..+|.+..- +.+...+||+|+-||.++-.+.+. ....|++||..-.-+.- . ++....+.... ..
T Consensus 62 RG~~KL~~ale~F~l---~~k~kv~LDiGsSTGGFTd~lLq~---gAk~VyavDVG~~Ql~~--k-LR~d~rV~~~E-~t 131 (245)
T COG1189 62 RGGLKLEKALEEFEL---DVKGKVVLDIGSSTGGFTDVLLQR---GAKHVYAVDVGYGQLHW--K-LRNDPRVIVLE-RT 131 (245)
T ss_pred cHHHHHHHHHHhcCc---CCCCCEEEEecCCCccHHHHHHHc---CCcEEEEEEccCCccCH--h-HhcCCcEEEEe-cC
Confidence 344455556665442 346689999999999998877762 35789999987642221 1 12211111110 01
Q ss_pred hHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchH
Q 012511 152 SIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 152 ~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~ 212 (462)
+...+.. ....+..|+|++--++-.+ ...+..+..+++..+-.+.+|-|---.|-+
T Consensus 132 N~r~l~~--~~~~~~~d~~v~DvSFISL---~~iLp~l~~l~~~~~~~v~LvKPQFEagr~ 187 (245)
T COG1189 132 NVRYLTP--EDFTEKPDLIVIDVSFISL---KLILPALLLLLKDGGDLVLLVKPQFEAGRE 187 (245)
T ss_pred ChhhCCH--HHcccCCCeEEEEeehhhH---HHHHHHHHHhcCCCceEEEEecchhhhhhh
Confidence 1111111 0112367899887655444 344555666665434566777775544433
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=82.08 E-value=1.2 Score=37.80 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=27.9
Q ss_pred ccCHHHHHHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHH
Q 012511 56 KYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALRE 112 (462)
Q Consensus 56 ~y~~~e~~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~ 112 (462)
.|-+....||+...+-..|.. .++....|+|||.|....-++.
T Consensus 36 VfEDlaIAAyLi~LW~~~~~~--------------~~~~~FVDlGCGNGLLV~IL~~ 78 (112)
T PF07757_consen 36 VFEDLAIAAYLIELWRDMYGE--------------QKFQGFVDLGCGNGLLVYILNS 78 (112)
T ss_pred HHHHHHHHHHHHHHHhcccCC--------------CCCCceEEccCCchHHHHHHHh
Confidence 344555566665544333322 2456899999999998887775
|
; GO: 0008168 methyltransferase activity |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.01 E-value=4.7 Score=40.09 Aligned_cols=56 Identities=18% Similarity=-0.005 Sum_probs=43.1
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
++..+.+.. ...+..|||-=+|+||.+.|+.. ...+++|+|++++..+.|+..+..
T Consensus 197 L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~----lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKA----SGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHHh
Confidence 344444332 34567999999999998888776 356899999999999999988754
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.91 E-value=14 Score=39.38 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=64.8
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEec
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 173 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias 173 (462)
.++|-+|||.-.....+.+ .....++.+|.|+-.++....... ...+..... ..+.. .+.++..+||+||.-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~---~G~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~--~~d~~-~l~fedESFdiVIdk 121 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYK---NGFEDITNIDSSSVVVAAMQVRNA--KERPEMQMV--EMDMD-QLVFEDESFDIVIDK 121 (482)
T ss_pred ceeEeecCCCCHHHHHHHh---cCCCCceeccccHHHHHHHHhccc--cCCcceEEE--Eecch-hccCCCcceeEEEec
Confidence 3899999998876665554 245789999999988776654321 222222110 01121 244678899999999
Q ss_pred ccccCCCCHHHH----------HHHHHHHHhcCCCEEEEEecC
Q 012511 174 YVLGEVPSLQDR----------ITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 174 ~vL~el~~~~~r----------~~~i~~Lw~~~gG~LVlVEpG 206 (462)
.+|..+-.++.+ +.-+.++++ ++|..+.|--+
T Consensus 122 GtlDal~~de~a~~~~~~v~~~~~eVsrvl~-~~gk~~svtl~ 163 (482)
T KOG2352|consen 122 GTLDALFEDEDALLNTAHVSNMLDEVSRVLA-PGGKYISVTLV 163 (482)
T ss_pred CccccccCCchhhhhhHHhhHHHhhHHHHhc-cCCEEEEEEee
Confidence 999888644322 234455554 58876666553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-08
Identities = 58/444 (13%), Positives = 122/444 (27%), Gaps = 134/444 (30%)
Query: 107 FWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD------- 159
FW L + + +Q+ + +++ + + + I+ +
Sbjct: 68 FWTLLS------------KQEEMVQKFVEEVLR--INYKFL--MSPIKTEQRQPSMMTRM 111
Query: 160 -ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE--PGTPQGSS---- 212
I + +R ++ + V LQ + + + L +L VL++ G+ G +
Sbjct: 112 YIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--GKTWVAL 168
Query: 213 -------IISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEG 265
+ +M I W+ + E L L+ ++ + P
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPET------------VLEMLQKLLYQIDPNWTSR 216
Query: 266 RCPLENSGKYCHFVQ-RLQRTTSQRAYKRS--------KSEPLRGF-------------- 302
N H +Q L+R + Y+ ++ F
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 303 --------EDEKFSFVAFRRGERPRE------RWPLDGMKFDTLKEQHAKRNPEDLEIDY 348
S P E ++ L + L + NP L I
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-L-DCRPQDLPREVLTTNPRRLSI-- 332
Query: 349 EDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEE--------------T 394
+ ++ + D++ ++S + + E
Sbjct: 333 -----IAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 395 IPAD-LGGGWGRIIFSPVRRGRQVAMDVCRS---IKRDGSEGSFQ-HLVF-----TRSKN 444
IP L W +I S V V ++ +++ E + ++
Sbjct: 387 IPTILLSLIWFDVIKSDV----MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 445 PTLHR-------LAKKSLWGDLWP 461
LHR + K DL P
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIP 466
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 8e-07
Identities = 52/330 (15%), Positives = 96/330 (29%), Gaps = 90/330 (27%)
Query: 4 KVL---RLSESFNAIKG----------VNLTLTESTSKELFEDPLKSVEQSKRWKIKS-- 48
K+L R + + + ++TLT K L L Q ++ +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 49 --AYGDIGLKYRDD----ETIAYV-ASRMPAVYSACYRVL--CEVRRRLPGFS------- 92
I RD + +V ++ + + VL E R+ S
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 93 -PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQR-AGQSLMQG-PKDLPLIHS 149
P +L S W V + + + SL++ PK+ S
Sbjct: 387 IPTILL-------SLIW----------FDVIKSDVMVVVNKLHKYSLVEKQPKE--STIS 427
Query: 150 YNSIQALNKDISKSERE-HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDV--------- 199
SI K ++E H ++ Y I DL
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHY----------NIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 200 ---LVLVEPGTPQGSSIISQMRSHIL---WMEKRKSRKYEARKSKDTNKETSKDLVTLRS 253
L +E ++ R L ++E++ A + + T + L +
Sbjct: 478 GHHLKNIEHP-----ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 254 GVHIVAPCPHEGRCPLENSGKYCHFVQRLQ 283
+I P R L N+ F+ +++
Sbjct: 533 --YICDNDPKYER--LVNA--ILDFLPKIE 556
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 6e-06
Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 15/145 (10%)
Query: 78 YRVLCEVRRRLPGFSPA-KVLDFGAGTGSAFW----ALREVWPRSLEKVNLVEPSQSMQR 132
+ L + R+ K+L G G G ++ +P +VEPS
Sbjct: 37 DKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIA 96
Query: 133 AGQSLMQGPKDLPLI----HSYNSIQALNKDISKSEREH-DLVIASYVLGEVPSLQDRIT 187
+ L+ +L + H S + ++ + K E + D + +L V +
Sbjct: 97 KYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPA--- 153
Query: 188 IVRQLWDLTRD--VLVLVEPGTPQG 210
++ L ++++ G
Sbjct: 154 TLKFFHSLLGTNAKMLIIVVSGSSG 178
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 8e-06
Identities = 22/155 (14%), Positives = 61/155 (39%), Gaps = 14/155 (9%)
Query: 68 SRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPS 127
+ + Y V + +LD GAGTG L E +P + LV+ S
Sbjct: 22 RKFIPCFDDFYGVSVSIASVDT--ENPDILDLGAGTGLLSAFLMEKYPEA--TFTLVDMS 77
Query: 128 QSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRIT 187
+ M ++ +G + I + + + +D+V+++ + + +D+
Sbjct: 78 EKMLEIAKNRFRGNLKVKYIEA--DYSKYDFEEK-----YDMVVSALSIHHLED-EDKKE 129
Query: 188 IVRQLWDLTRD--VLVLVEPGTPQGSSIISQMRSH 220
+ ++ + + ++ + + + + + I + ++
Sbjct: 130 LYKRSYSILKESGIFINADLVHGETAFIENLNKTI 164
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-04
Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 11/128 (8%)
Query: 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSM-QRAGQSLMQ 139
+ V L + +V+D G G G+ L + E++ V+ S + A + L +
Sbjct: 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLK--DSFFEQITGVDVSYRSLEIAQERLDR 75
Query: 140 GPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDV 199
IQ K +D V+ + +L R +
Sbjct: 76 LRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDL--------SRLGAFERVL 127
Query: 200 LVLVEPGT 207
+P
Sbjct: 128 FEFAQPKI 135
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 7e-04
Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 11/128 (8%)
Query: 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSM-QRAGQSLMQ 139
L V L + KV+D G G G+ L +S E++ V+ S S+ +RA L
Sbjct: 18 LGTVVAVLKSVNAKKVIDLGCGEGNLLSLLL--KDKSFEQITGVDVSYSVLERAKDRLKI 75
Query: 140 GPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDV 199
+ Q+ K +D V+ + +L + +
Sbjct: 76 DRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLD--------ENRLQAFEKVL 127
Query: 200 LVLVEPGT 207
P T
Sbjct: 128 FEFTRPQT 135
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 462 | |||
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.59 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.33 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.32 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.31 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.29 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.28 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.28 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.26 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.25 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.25 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.24 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.24 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.23 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.23 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.23 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.22 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.22 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.22 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.21 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.21 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.21 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.21 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.2 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.2 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.2 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.2 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.19 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.19 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.19 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.18 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.18 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.17 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.17 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.17 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.17 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.17 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.17 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.16 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.16 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.16 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.16 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.15 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.14 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.14 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.14 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.13 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.13 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.13 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.13 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.13 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.12 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.12 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.12 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.12 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.11 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.11 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.1 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.1 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.09 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.09 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.08 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.08 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.05 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.04 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.04 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.04 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.04 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.02 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.02 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.0 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.0 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.0 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.99 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.99 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.99 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.98 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.98 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.97 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.97 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.96 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.96 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.96 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.96 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.95 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.95 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.94 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.94 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.94 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.94 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.92 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.91 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.91 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.91 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.9 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.9 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.9 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.9 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.9 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.89 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.89 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.89 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.87 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.86 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.86 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.86 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.86 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.85 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.85 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.85 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.85 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.85 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.85 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.84 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.84 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.84 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.83 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.83 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.82 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.82 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.82 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.82 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.81 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.79 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.78 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.78 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.78 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.77 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.77 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.77 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.75 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.75 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.75 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.74 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.74 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.74 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.74 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.74 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.74 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.74 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.73 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.72 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.72 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.71 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.71 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.71 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.7 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.7 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.7 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.7 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.7 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.7 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.7 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.7 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.69 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.69 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.68 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.68 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.68 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.68 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.68 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.67 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.66 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.65 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.65 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.64 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.64 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.63 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.62 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.62 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.62 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.62 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.6 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.6 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.6 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.6 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.59 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.59 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.59 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.58 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.58 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.57 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.57 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.57 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.57 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.56 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.56 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.55 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.55 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.55 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.55 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.54 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.54 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.53 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.53 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.53 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.51 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.5 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.49 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.48 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.48 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.48 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.48 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.47 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.46 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.45 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.44 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.44 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.43 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.42 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.41 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.4 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.4 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.39 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.39 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.36 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.36 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.35 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.34 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.33 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.32 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.31 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.3 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.3 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.29 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.24 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.23 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.2 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.19 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.17 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.17 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.16 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.16 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.15 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.14 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.14 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.12 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.11 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.09 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.07 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.06 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.05 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.05 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.03 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.02 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.02 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.02 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.01 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 97.97 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 97.96 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.95 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.95 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.94 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.93 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 97.91 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 97.76 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.74 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 97.65 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.65 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 97.62 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.62 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.61 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 97.6 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.59 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.56 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.54 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.53 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.44 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.41 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 97.38 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.38 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.21 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.16 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.1 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.09 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 96.98 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 96.96 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.83 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 96.82 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 96.81 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 96.8 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 96.73 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 96.71 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 96.61 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 96.52 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 96.51 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.49 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 96.48 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 96.39 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 96.25 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.66 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.58 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 95.51 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.4 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 95.05 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 94.87 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 94.03 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 93.87 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 93.35 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 92.44 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 91.41 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 90.37 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 89.7 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 88.79 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 87.71 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 86.13 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 84.1 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 83.72 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 83.7 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 81.83 |
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-14 Score=138.55 Aligned_cols=147 Identities=16% Similarity=0.256 Sum_probs=107.9
Q ss_pred ccCHHHHHHH--HHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHH
Q 012511 56 KYRDDETIAY--VASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRA 133 (462)
Q Consensus 56 ~y~~~e~~AY--la~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~ 133 (462)
.+++.-+..| ++.|.-+.|..+...+..|..+... .+.+|||+|||+|..+.++++.++....+|+|||+|+.|++.
T Consensus 33 ~F~~~va~~fdd~i~rsvP~Y~~~~~~i~~l~~~~~~-~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~ 111 (261)
T 4gek_A 33 TFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIER 111 (261)
T ss_dssp CCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCC-TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHH
T ss_pred eeCcchhhhhhhhHhhcCCCHHHHHHHHHHHHHHhCC-CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHH
Confidence 3555555555 3556667799999988888877532 347999999999999999988775445699999999999999
Q ss_pred HHHhhcCCCC---CCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 134 GQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 134 Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
|++.+..... +.++.. ++. .++ .+.||+|+++++|++++ +.++..+++++.+. |||.|||.|+..+
T Consensus 112 A~~~~~~~~~~~~v~~~~~-----D~~-~~~--~~~~d~v~~~~~l~~~~-~~~~~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 112 CRRHIDAYKAPTPVDVIEG-----DIR-DIA--IENASMVVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp HHHHHHTSCCSSCEEEEES-----CTT-TCC--CCSEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred HHHHHHhhccCceEEEeec-----ccc-ccc--ccccccceeeeeeeecC-chhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence 9998865432 222221 222 233 35699999999999997 66666666666654 8999999998776
Q ss_pred CchH
Q 012511 209 QGSS 212 (462)
Q Consensus 209 ~Gf~ 212 (462)
....
T Consensus 183 ~~~~ 186 (261)
T 4gek_A 183 EDAK 186 (261)
T ss_dssp SSHH
T ss_pred CCHH
Confidence 6543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-12 Score=117.81 Aligned_cols=105 Identities=20% Similarity=0.289 Sum_probs=76.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|..+..++.. ..+++++|+|+.|++.++..+. .++.++.. ++. .++.. ++||+|+
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~-----d~~-~~~~~-~~fD~v~ 111 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA----GRTVYGIEPSREMRMIAKEKLP--KEFSITEG-----DFL-SFEVP-TSIDTIV 111 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT----TCEEEEECSCHHHHHHHHHHSC--TTCCEESC-----CSS-SCCCC-SCCSEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHhC----CCeEEEEeCCHHHHHHHHHhCC--CceEEEeC-----Chh-hcCCC-CCeEEEE
Confidence 4579999999999998888873 4589999999999999998876 23333322 122 13333 7999999
Q ss_pred ecccccCCCCHHH--HHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 172 ASYVLGEVPSLQD--RITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 172 as~vL~el~~~~~--r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
+.++|+++++... .+..+.++++ +||.|++.++..+..
T Consensus 112 ~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~ 151 (220)
T 3hnr_A 112 STYAFHHLTDDEKNVAIAKYSQLLN-KGGKIVFADTIFADQ 151 (220)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSC-TTCEEEEEEECBSSH
T ss_pred ECcchhcCChHHHHHHHHHHHHhcC-CCCEEEEEeccccCh
Confidence 9999999985443 3344444443 799999999765443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-12 Score=121.78 Aligned_cols=109 Identities=14% Similarity=0.274 Sum_probs=83.1
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
..+.+|||+|||+|..+..++... .+|+++|+|+.|++.|++.+.... ++.++.. ++. .++..+++||
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~----~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~-----d~~-~l~~~~~~fD 105 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFV----KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQG-----DAE-QMPFTDERFH 105 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGS----SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC-----CC--CCCSCTTCEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhC----CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEe-----cHH-hCCCCCCCEE
Confidence 356899999999999998888754 389999999999999998775322 2222221 222 2445567999
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
+|+++++|+++++....+..+.++++ |||.|+++++..+..
T Consensus 106 ~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~~~~~~~~~~ 146 (260)
T 1vl5_A 106 IVTCRIAAHHFPNPASFVSEAYRVLK-KGGQLLLVDNSAPEN 146 (260)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEBCSS
T ss_pred EEEEhhhhHhcCCHHHHHHHHHHHcC-CCCEEEEEEcCCCCC
Confidence 99999999999988777777777776 699999998876654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-12 Score=124.31 Aligned_cols=119 Identities=17% Similarity=0.228 Sum_probs=77.6
Q ss_pred CCCeEEEECCchhHHHHH----HHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceec---chhHhhhhhc--cCC
Q 012511 92 SPAKVLDFGAGTGSAFWA----LREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS---YNSIQALNKD--ISK 162 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~a----l~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~---~~~~~~l~~~--l~~ 162 (462)
++.+|||||||+|..+.. +....+.....++++|+|++|++.|++.+.....++.+.. ......+... .+.
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 457999999999976543 2233332111459999999999999988754322221110 0011111100 012
Q ss_pred CCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCch
Q 012511 163 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 211 (462)
Q Consensus 163 ~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf 211 (462)
..++||+|+++++|+++++....+..+.++++ |||.|+|++.....++
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~ 179 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLG-TNAKMLIIVVSGSSGW 179 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEECTTSHH
T ss_pred CCCceeEEEEeeeeeecCCHHHHHHHHHHHcC-CCcEEEEEEecCCccH
Confidence 45789999999999999988887777777776 6999999987644333
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-11 Score=113.83 Aligned_cols=107 Identities=11% Similarity=0.119 Sum_probs=80.2
Q ss_pred CCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCccc
Q 012511 89 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 89 p~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
+...+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|+..+....++.++.. ++.. ++ ..++||
T Consensus 48 ~~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----d~~~-~~-~~~~fD 116 (216)
T 3ofk_A 48 SSGAVSNGLEIGCAAGAFTEKLAPH----CKRLTVIDVMPRAIGRACQRTKRWSHISWAAT-----DILQ-FS-TAELFD 116 (216)
T ss_dssp TTSSEEEEEEECCTTSHHHHHHGGG----EEEEEEEESCHHHHHHHHHHTTTCSSEEEEEC-----CTTT-CC-CSCCEE
T ss_pred ccCCCCcEEEEcCCCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHhcccCCCeEEEEc-----chhh-CC-CCCCcc
Confidence 3345679999999999998888764 35899999999999999998876444333322 2221 22 467899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
+|+++++|+++++......+++++.+. +||.|++..+.
T Consensus 117 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 117 LIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp EEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 999999999999877665666666554 79999997753
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=120.11 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=84.5
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 161 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~ 161 (462)
..|....+ ...+|||+|||+|..+..+++. ..+|++||+|+.|++.|++ ..++.++.. +. ..++
T Consensus 31 ~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~----~~~v~gvD~s~~ml~~a~~----~~~v~~~~~-----~~-e~~~ 94 (257)
T 4hg2_A 31 RWLGEVAP--ARGDALDCGCGSGQASLGLAEF----FERVHAVDPGEAQIRQALR----HPRVTYAVA-----PA-EDTG 94 (257)
T ss_dssp HHHHHHSS--CSSEEEEESCTTTTTHHHHHTT----CSEEEEEESCHHHHHTCCC----CTTEEEEEC-----CT-TCCC
T ss_pred HHHHHhcC--CCCCEEEEcCCCCHHHHHHHHh----CCEEEEEeCcHHhhhhhhh----cCCceeehh-----hh-hhhc
Confidence 33444444 2469999999999988888864 4589999999999987643 233333322 12 2345
Q ss_pred CCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHH
Q 012511 162 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQ 216 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~ 216 (462)
..+++||+|+++.+||++. ....+..+.++++ |||.|+++..+.+.-...+..
T Consensus 95 ~~~~sfD~v~~~~~~h~~~-~~~~~~e~~rvLk-pgG~l~~~~~~~~~~~~~~~~ 147 (257)
T 4hg2_A 95 LPPASVDVAIAAQAMHWFD-LDRFWAELRRVAR-PGAVFAAVTYGLTRVDPEVDA 147 (257)
T ss_dssp CCSSCEEEEEECSCCTTCC-HHHHHHHHHHHEE-EEEEEEEEEECCCBCCHHHHH
T ss_pred ccCCcccEEEEeeehhHhh-HHHHHHHHHHHcC-CCCEEEEEECCCCCCCHHHHH
Confidence 5678999999999999985 7766777777776 799999999887766554433
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.28 E-value=6e-11 Score=111.84 Aligned_cols=110 Identities=17% Similarity=0.306 Sum_probs=81.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|..+..++..++ ..+++++|+|+.|++.|+..+....++.++.. ++. .++.. ++||+|+
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----d~~-~~~~~-~~fD~v~ 114 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYP--EATFTLVDMSEKMLEIAKNRFRGNLKVKYIEA-----DYS-KYDFE-EKYDMVV 114 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHTCSCTTEEEEES-----CTT-TCCCC-SCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHhhccCCCEEEEeC-----chh-ccCCC-CCceEEE
Confidence 468999999999999999888775 46899999999999999998876443333322 222 12323 7899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCch
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf 211 (462)
++++|++++ ...+..+++++.+. |||.|++.++..+...
T Consensus 115 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 155 (234)
T 3dtn_A 115 SALSIHHLE-DEDKKELYKRSYSILKESGIFINADLVHGETA 155 (234)
T ss_dssp EESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEECBCSSH
T ss_pred EeCccccCC-HHHHHHHHHHHHHhcCCCcEEEEEEecCCCCh
Confidence 999999996 55444444444442 7999999998766554
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-11 Score=117.80 Aligned_cols=117 Identities=22% Similarity=0.209 Sum_probs=84.7
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQA 155 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~ 155 (462)
+.+..+...++. ++.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|++.+..... +.++.. +
T Consensus 56 ~~l~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d 125 (285)
T 4htf_A 56 QDLDRVLAEMGP-QKLRVLDAGGGEGQTAIKMAER----GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHC-----A 125 (285)
T ss_dssp HHHHHHHHHTCS-SCCEEEEETCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEES-----C
T ss_pred HHHHHHHHhcCC-CCCEEEEeCCcchHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEc-----C
Confidence 345555555543 3679999999999998888874 35899999999999999998865431 112221 1
Q ss_pred hhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 156 LNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 156 l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+....+...++||+|++.++|+++++....+..+.++++ |||.|++..+.
T Consensus 126 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~ 175 (285)
T 4htf_A 126 AQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLR-PGGVLSLMFYN 175 (285)
T ss_dssp GGGTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEEB
T ss_pred HHHhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcC-CCeEEEEEEeC
Confidence 221111346799999999999999988776666666665 69999998874
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-11 Score=114.40 Aligned_cols=114 Identities=21% Similarity=0.234 Sum_probs=84.2
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 161 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~ 161 (462)
..+...++...+.+|||+|||+|..+..++... ..+|+++|+|+.|++.|++.+. ..++.++.. ++. .++
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~-----d~~-~~~ 103 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG---AKKVLGIDLSERMLTEAKRKTT-SPVVCYEQK-----AIE-DIA 103 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTT---CSEEEEEESCHHHHHHHHHHCC-CTTEEEEEC-----CGG-GCC
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcC---CCEEEEEECCHHHHHHHHHhhc-cCCeEEEEc-----chh-hCC
Confidence 334444555567899999999999988888742 2389999999999999998876 223333322 222 234
Q ss_pred CCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 162 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
...++||+|+++++|+++++....+..+.++++ +||.|++..+.
T Consensus 104 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~ 147 (253)
T 3g5l_A 104 IEPDAYNVVLSSLALHYIASFDDICKKVYINLK-SSGSFIFSVEH 147 (253)
T ss_dssp CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred CCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcC-CCcEEEEEeCC
Confidence 456799999999999999887777777777776 69999987653
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=118.07 Aligned_cols=118 Identities=12% Similarity=0.223 Sum_probs=82.7
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 161 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~ 161 (462)
..+...++...+.+|||+|||+|..+..++..++ .+|+++|+|+.|++.|+..+....++.++.. ++. .++
T Consensus 45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----d~~-~~~ 115 (266)
T 3ujc_A 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYG---AHTHGIDICSNIVNMANERVSGNNKIIFEAN-----DIL-TKE 115 (266)
T ss_dssp HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHTCCSCTTEEEEEC-----CTT-TCC
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEC-----ccc-cCC
Confidence 3444444444567999999999999988887542 5899999999999999988765422222221 222 234
Q ss_pred CCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 162 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
...++||+|++.++|++++ ..+...+++++.+. |||.|++.++..+.
T Consensus 116 ~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 164 (266)
T 3ujc_A 116 FPENNFDLIYSRDAILALS-LENKNKLFQKCYKWLKPTGTLLITDYCATE 164 (266)
T ss_dssp CCTTCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEESC
T ss_pred CCCCcEEEEeHHHHHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 4567999999999999994 34444444444442 79999999976554
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.24 E-value=7.8e-12 Score=116.49 Aligned_cols=101 Identities=14% Similarity=0.008 Sum_probs=70.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC--------------CCCCCceecchhHhhhh
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--------------PKDLPLIHSYNSIQALN 157 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~--------------~~~~~~i~~~~~~~~l~ 157 (462)
.+.+|||+|||+|..+..+++. ..+|++||+|+.|++.|++.... ..++.++.. ++.
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~----g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----d~~ 92 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQ----GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG-----DFF 92 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH----CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE-----CCS
T ss_pred CCCEEEEeCCCCcHhHHHHHHC----CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC-----ccc
Confidence 4679999999999988877763 34899999999999999987642 122222221 121
Q ss_pred hccCCCC-CcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEE
Q 012511 158 KDISKSE-REHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 203 (462)
Q Consensus 158 ~~l~~~~-~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlV 203 (462)
.++... ++||+|++..+|++++ ...+..+++.+.+. |||.++++
T Consensus 93 -~l~~~~~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 93 -ALTARDIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp -SSTHHHHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred -cCCcccCCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 122222 6899999999999997 55555555555443 79985444
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.3e-11 Score=110.86 Aligned_cols=116 Identities=10% Similarity=0.128 Sum_probs=83.8
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhh
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNK 158 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~ 158 (462)
..+...++. ++.+|||+|||+|..+..++.. + ..+++++|+|+.|++.|+..+.... ++.++.. ++.
T Consensus 34 ~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~-~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~- 103 (219)
T 3dlc_A 34 ENIINRFGI-TAGTCIDIGSGPGALSIALAKQ-S--DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQG-----DVH- 103 (219)
T ss_dssp HHHHHHHCC-CEEEEEEETCTTSHHHHHHHHH-S--EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-----BTT-
T ss_pred HHHHHhcCC-CCCEEEEECCCCCHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEc-----CHH-
Confidence 334444432 3459999999999998888875 2 4689999999999999999876432 1222221 222
Q ss_pred ccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 159 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 159 ~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
.++...++||+|+++++|+++++....+..+.++++ +||.|++.++-..
T Consensus 104 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~ 152 (219)
T 3dlc_A 104 NIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILK-SGGKTYIGGGFGN 152 (219)
T ss_dssp BCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEECCSS
T ss_pred HCCCCcccccEEEECchHhhccCHHHHHHHHHHhCC-CCCEEEEEeccCc
Confidence 234456789999999999999887776777777775 6999999875443
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.2e-11 Score=115.64 Aligned_cols=121 Identities=16% Similarity=0.118 Sum_probs=87.8
Q ss_pred HHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHh
Q 012511 78 YRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQ 154 (462)
Q Consensus 78 ~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~ 154 (462)
.+++..+...++...+.+|||+|||+|..+..++...+ .+|+++|+|+.|++.++..+.... ++.++..
T Consensus 47 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~----- 118 (273)
T 3bus_A 47 DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD---VRVTGISISRPQVNQANARATAAGLANRVTFSYA----- 118 (273)
T ss_dssp HHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-----
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC-----
Confidence 34455666666555668999999999999888877543 589999999999999998875432 1222221
Q ss_pred hhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 155 ALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 155 ~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
++. .++...++||+|++.++|+++++....+..+.++++ +||.|++.++...
T Consensus 119 d~~-~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~ 170 (273)
T 3bus_A 119 DAM-DLPFEDASFDAVWALESLHHMPDRGRALREMARVLR-PGGTVAIADFVLL 170 (273)
T ss_dssp CTT-SCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEE-EEEEEEEEEEEES
T ss_pred ccc-cCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcC-CCeEEEEEEeecc
Confidence 222 234456789999999999999887665555666654 6999999987543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.7e-11 Score=112.68 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=80.4
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l 160 (462)
+..+...++...+.+|||+|||+|..+..++... ..+|+++|+|+.|++.|++.+....++.++.. ++. .+
T Consensus 82 ~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----d~~-~~ 152 (254)
T 1xtp_A 82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL---YATTDLLEPVKHMLEEAKRELAGMPVGKFILA-----SME-TA 152 (254)
T ss_dssp HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH---CSEEEEEESCHHHHHHHHHHTTTSSEEEEEES-----CGG-GC
T ss_pred HHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh---cCEEEEEeCCHHHHHHHHHHhccCCceEEEEc-----cHH-HC
Confidence 3444455554456899999999999888777643 34799999999999999988765322222221 222 23
Q ss_pred CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 161 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
+...++||+|+++++|++++ ..+...+++++.+. +||.|+|.++
T Consensus 153 ~~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 153 TLPPNTYDLIVIQWTAIYLT-DADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp CCCSSCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCeEEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 44567899999999999996 34444445444443 7999999986
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=115.86 Aligned_cols=109 Identities=12% Similarity=0.119 Sum_probs=79.1
Q ss_pred HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCC
Q 012511 87 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKS 163 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~ 163 (462)
.++...+.+|||+|||+|..+..++..++ .+++++|+|+.|++.|++.+.... ++.++.. ++. .++.
T Consensus 31 ~~~~~~~~~VLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~-----d~~-~~~~- 100 (256)
T 1nkv_A 31 VLRMKPGTRILDLGSGSGEMLCTWARDHG---ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN-----DAA-GYVA- 100 (256)
T ss_dssp HTCCCTTCEEEEETCTTCHHHHHHHHHTC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-----CCT-TCCC-
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC-----ChH-hCCc-
Confidence 34334557999999999999988887653 489999999999999998875432 2222221 222 1333
Q ss_pred CCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 164 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 164 ~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
.++||+|++..+++++++....+..+.++++ |||.|++.++.
T Consensus 101 ~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~~ 142 (256)
T 1nkv_A 101 NEKCDVAACVGATWIAGGFAGAEELLAQSLK-PGGIMLIGEPY 142 (256)
T ss_dssp SSCEEEEEEESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEEEE
T ss_pred CCCCCEEEECCChHhcCCHHHHHHHHHHHcC-CCeEEEEecCc
Confidence 6789999999999999876665555555554 79999999864
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-11 Score=115.27 Aligned_cols=113 Identities=16% Similarity=0.224 Sum_probs=82.3
Q ss_pred HHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCC
Q 012511 84 VRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKS 163 (462)
Q Consensus 84 L~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~ 163 (462)
+...++...+.+|||+|||+|..+..++..++ ..+|+++|+|+.|++.++.... ++.++.. ++. .++ .
T Consensus 25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~v~~~D~s~~~~~~a~~~~~---~~~~~~~-----d~~-~~~-~ 92 (259)
T 2p35_A 25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYG--VNVITGIDSDDDMLEKAADRLP---NTNFGKA-----DLA-TWK-P 92 (259)
T ss_dssp HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHC--TTSEEEEESCHHHHHHHHHHST---TSEEEEC-----CTT-TCC-C
T ss_pred HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhCC---CcEEEEC-----Chh-hcC-c
Confidence 33344444568999999999999998888764 3589999999999999988632 2333322 122 233 4
Q ss_pred CCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 164 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 164 ~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
.++||+|+++++|+++++....+..+.++++ +||.|++.+++...
T Consensus 93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~ 137 (259)
T 2p35_A 93 AQKADLLYANAVFQWVPDHLAVLSQLMDQLE-SGGVLAVQMPDNLQ 137 (259)
T ss_dssp SSCEEEEEEESCGGGSTTHHHHHHHHGGGEE-EEEEEEEEEECCTT
T ss_pred cCCcCEEEEeCchhhCCCHHHHHHHHHHhcC-CCeEEEEEeCCCCC
Confidence 5789999999999999876665555555554 69999999987643
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.4e-11 Score=114.75 Aligned_cols=104 Identities=20% Similarity=0.300 Sum_probs=77.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+|||+|..+..+++.. .+|+++|+|+.|++.|+..+.. ++.++.. ++.. + ...++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~----~~v~gvD~s~~~~~~a~~~~~~--~v~~~~~-----d~~~-~-~~~~~fD~v~ 108 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHF----NDITCVEASEEAISHAQGRLKD--GITYIHS-----RFED-A-QLPRRYDNIV 108 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTC----SCEEEEESCHHHHHHHHHHSCS--CEEEEES-----CGGG-C-CCSSCEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHhC----CcEEEEeCCHHHHHHHHHhhhC--CeEEEEc-----cHHH-c-CcCCcccEEE
Confidence 45799999999999888877643 3799999999999999987754 3333322 1222 2 2457899999
Q ss_pred ecccccCCCCHHHHHHHHH-HHHhcCCCEEEEEecCCCC
Q 012511 172 ASYVLGEVPSLQDRITIVR-QLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~-~Lw~~~gG~LVlVEpGtp~ 209 (462)
+.++|+++++....+..+. ++++ |||.|++.++....
T Consensus 109 ~~~~l~~~~~~~~~l~~~~~~~Lk-pgG~l~i~~~~~~~ 146 (250)
T 2p7i_A 109 LTHVLEHIDDPVALLKRINDDWLA-EGGRLFLVCPNANA 146 (250)
T ss_dssp EESCGGGCSSHHHHHHHHHHTTEE-EEEEEEEEEECTTC
T ss_pred EhhHHHhhcCHHHHHHHHHHHhcC-CCCEEEEEcCChHH
Confidence 9999999988766555555 5554 79999999986543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-10 Score=107.73 Aligned_cols=105 Identities=22% Similarity=0.240 Sum_probs=73.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-------CCCceecchhHhhhhhccCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-------DLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-------~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
.+.+|||+|||+|..+..+++..+ ..+|+++|+|+.|++.|++.+.... ++.++.. ++. ..+...
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-----d~~-~~~~~~ 100 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSF--FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG-----ALT-YQDKRF 100 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTT--CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEEC-----CTT-SCCGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCC--CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeC-----Ccc-cccccC
Confidence 457999999999999998887543 3589999999999999999876432 1212211 121 122334
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
++||+|+++++|++++ ......+++.+.+. +||.+|++..
T Consensus 101 ~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 101 HGYDAATVIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp CSCSEEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred CCcCEEeeHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 6899999999999996 44445556665553 6886666543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-10 Score=112.93 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=79.6
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+.+|||+|||+|..+..+++ ...+|+++|+|+.|++.++..+. ++.++.. +.. .++. .++||+|
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~-----d~~-~~~~-~~~fD~v 121 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ----SGAEVLGTDNAATMIEKARQNYP---HLHFDVA-----DAR-NFRV-DKPLDAV 121 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHCT---TSCEEEC-----CTT-TCCC-SSCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHh----CCCeEEEEECCHHHHHHHHhhCC---CCEEEEC-----Chh-hCCc-CCCcCEE
Confidence 3567999999999999988887 24689999999999999988752 2333322 122 2333 4689999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
+++++|+++++....+..+.++++ +||.|++..++...
T Consensus 122 ~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~~~ 159 (279)
T 3ccf_A 122 FSNAMLHWVKEPEAAIASIHQALK-SGGRFVAEFGGKGN 159 (279)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECTTT
T ss_pred EEcchhhhCcCHHHHHHHHHHhcC-CCcEEEEEecCCcc
Confidence 999999999988776777777776 69999998886544
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.8e-11 Score=117.61 Aligned_cols=120 Identities=14% Similarity=0.162 Sum_probs=86.2
Q ss_pred HHHHHHHHC----CCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchh
Q 012511 80 VLCEVRRRL----PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNS 152 (462)
Q Consensus 80 vL~eL~~rl----p~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~ 152 (462)
.+..+...+ +...+.+|||+|||+|..+..++..++ .+|+++|+|+.|++.|++.+.... ++.++..
T Consensus 66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~--- 139 (297)
T 2o57_A 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG---VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG--- 139 (297)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEEC---
T ss_pred HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEc---
Confidence 444444444 333457999999999999888887553 389999999999999998764321 2222221
Q ss_pred HhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 153 IQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 153 ~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
++. .++...++||+|++.++|+++++....+..+.++++ |||.|++.++..+.
T Consensus 140 --d~~-~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~ 192 (297)
T 2o57_A 140 --SFL-EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK-PRGVMAITDPMKED 192 (297)
T ss_dssp --CTT-SCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEECT
T ss_pred --Ccc-cCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcC-CCeEEEEEEeccCC
Confidence 222 234456789999999999999987666666677765 69999999976543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.5e-11 Score=111.14 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=83.6
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l 160 (462)
+..+...++ ++.+|||+|||+|..+..++.. ..+|+++|+|+.|++.++..... .++.++.. ++. .+
T Consensus 44 ~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~-----d~~-~~ 110 (242)
T 3l8d_A 44 IPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRT----GYKAVGVDISEVMIQKGKERGEG-PDLSFIKG-----DLS-SL 110 (242)
T ss_dssp HHHHHHHSC--TTCEEEEETCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHTTTCB-TTEEEEEC-----BTT-BC
T ss_pred HHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhccc-CCceEEEc-----chh-cC
Confidence 333444443 4579999999999999888874 35899999999999999876522 22222222 122 23
Q ss_pred CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 161 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
+...++||+|++.++|+++++....+..+.++++ +||.|++.+++...
T Consensus 111 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~ 158 (242)
T 3l8d_A 111 PFENEQFEAIMAINSLEWTEEPLRALNEIKRVLK-SDGYACIAILGPTA 158 (242)
T ss_dssp SSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEE-EEEEEEEEEECTTC
T ss_pred CCCCCCccEEEEcChHhhccCHHHHHHHHHHHhC-CCeEEEEEEcCCcc
Confidence 4456799999999999999888776777777775 69999999876543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.3e-11 Score=112.22 Aligned_cols=109 Identities=17% Similarity=0.305 Sum_probs=82.9
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
..+.+|||+|||+|..+..++... .+|+++|+|+.|++.++..+... .++.++.. ++. .++...++||
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-----d~~-~~~~~~~~fD 89 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYV----QECIGVDATKEMVEVASSFAQEKGVENVRFQQG-----TAE-SLPFPDDSFD 89 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGS----SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEEC-----BTT-BCCSCTTCEE
T ss_pred CCCCEEEEEccCcCHHHHHHHHhC----CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEec-----ccc-cCCCCCCcEE
Confidence 356799999999999988887643 48999999999999999876432 22222221 222 2444567899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
+|+++++++++++....+..+.++++ +||.|+++++..+..
T Consensus 90 ~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~ 130 (239)
T 1xxl_A 90 IITCRYAAHHFSDVRKAVREVARVLK-QDGRFLLVDHYAPED 130 (239)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECBCSS
T ss_pred EEEECCchhhccCHHHHHHHHHHHcC-CCcEEEEEEcCCCCC
Confidence 99999999999988777777777776 699999999877655
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=109.47 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=82.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCC----ceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP----LIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~----~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.++..+....... .+.. ...++. .++...++|
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~d~~-~~~~~~~~~ 102 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK----GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEF--KVENAS-SLSFHDSSF 102 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEE--EECCTT-SCCSCTTCE
T ss_pred CCCeEEEECCCCCHHHHHHHhC----CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEE--EEeccc-ccCCCCCce
Confidence 4579999999999999888874 3589999999999999999876533100 1110 011122 234456789
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCchH
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~ 212 (462)
|+|+++++|+++++...+..+++.+.+. +||.|++++++......
T Consensus 103 D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~ 149 (235)
T 3sm3_A 103 DFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK 149 (235)
T ss_dssp EEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH
T ss_pred eEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH
Confidence 9999999999999888555555555543 79999999987755443
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=111.58 Aligned_cols=124 Identities=21% Similarity=0.237 Sum_probs=86.1
Q ss_pred hhHHHHHH-HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecc
Q 012511 72 AVYSACYR-VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSY 150 (462)
Q Consensus 72 ~~Ya~~~~-vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~ 150 (462)
..|..... ++..+...++ .+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|++.+. ++.++..
T Consensus 31 ~~~~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~- 100 (263)
T 3pfg_A 31 KDYHREAADLAALVRRHSP--KAASLLDVACGTGMHLRHLADS----FGTVEGLELSADMLAIARRRNP---DAVLHHG- 100 (263)
T ss_dssp CCHHHHHHHHHHHHHHHCT--TCCEEEEETCTTSHHHHHHTTT----SSEEEEEESCHHHHHHHHHHCT---TSEEEEC-
T ss_pred CCHHHHHHHHHHHHHhhCC--CCCcEEEeCCcCCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhCC---CCEEEEC-
Confidence 34544433 3444444443 3579999999999998887763 3489999999999999998765 2333322
Q ss_pred hhHhhhhhccCCCCCcccEEEecc-cccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCch
Q 012511 151 NSIQALNKDISKSEREHDLVIASY-VLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 151 ~~~~~l~~~l~~~~~~fDLVias~-vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf 211 (462)
++.. ++. .++||+|++++ +|+++++.++...+++++.+. +||.|+|.....+..+
T Consensus 101 ----d~~~-~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 158 (263)
T 3pfg_A 101 ----DMRD-FSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENF 158 (263)
T ss_dssp ----CTTT-CCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTC
T ss_pred ----ChHH-CCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhc
Confidence 1221 232 57899999998 999998667666677776664 7999998655554443
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-11 Score=115.89 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=80.1
Q ss_pred HHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCC
Q 012511 84 VRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKS 163 (462)
Q Consensus 84 L~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~ 163 (462)
+...++...+.+|||+|||+|..+..+++ ...+|+++|+|+.|++.++... ++.++.. ++. .++..
T Consensus 26 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~-----d~~-~~~~~ 91 (261)
T 3ege_A 26 IINLLNLPKGSVIADIGAGTGGYSVALAN----QGLFVYAVEPSIVMRQQAVVHP----QVEWFTG-----YAE-NLALP 91 (261)
T ss_dssp HHHHHCCCTTCEEEEETCTTSHHHHHHHT----TTCEEEEECSCHHHHHSSCCCT----TEEEECC-----CTT-SCCSC
T ss_pred HHHHhCCCCCCEEEEEcCcccHHHHHHHh----CCCEEEEEeCCHHHHHHHHhcc----CCEEEEC-----chh-hCCCC
Confidence 33344434568999999999999988886 3469999999999998776433 2322221 222 24445
Q ss_pred CCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 164 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 164 ~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
.++||+|++.++|+++++....+..+.++++ ||.++++++..
T Consensus 92 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk--gG~~~~~~~~~ 133 (261)
T 3ege_A 92 DKSVDGVISILAIHHFSHLEKSFQEMQRIIR--DGTIVLLTFDI 133 (261)
T ss_dssp TTCBSEEEEESCGGGCSSHHHHHHHHHHHBC--SSCEEEEEECG
T ss_pred CCCEeEEEEcchHhhccCHHHHHHHHHHHhC--CcEEEEEEcCC
Confidence 6799999999999999888887777777775 89999998753
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.6e-11 Score=110.32 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=81.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..++...+ ...+|+++|.|+.|++.|+..+.... ++.++.. ++. .++...++||+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~fD~ 109 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVG-EKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKS-----EEN-KIPLPDNTVDF 109 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHT-TTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEEC-----BTT-BCSSCSSCEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEec-----ccc-cCCCCCCCeeE
Confidence 457999999999998888887653 23589999999999999998875322 2222221 121 23345678999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
|+++++|+++++....+..+.++++ +||.|++++.....
T Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~ 148 (219)
T 3dh0_A 110 IFMAFTFHELSEPLKFLEELKRVAK-PFAYLAIIDWKKEE 148 (219)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHHEE-EEEEEEEEEECSSC
T ss_pred EEeehhhhhcCCHHHHHHHHHHHhC-CCeEEEEEEecccc
Confidence 9999999999877776666666665 69999999865543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.9e-11 Score=111.27 Aligned_cols=111 Identities=18% Similarity=0.188 Sum_probs=80.9
Q ss_pred HHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCC
Q 012511 85 RRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 85 ~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
...++...+.+|||+|||+|..+..++.. + ..+|+++|+|+.|++.|+..+... ++.++.. ++. .++...
T Consensus 36 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~--~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~-----d~~-~~~~~~ 105 (243)
T 3bkw_A 36 RAMLPEVGGLRIVDLGCGFGWFCRWAHEH-G--ASYVLGLDLSEKMLARARAAGPDT-GITYERA-----DLD-KLHLPQ 105 (243)
T ss_dssp HHHSCCCTTCEEEEETCTTCHHHHHHHHT-T--CSEEEEEESCHHHHHHHHHTSCSS-SEEEEEC-----CGG-GCCCCT
T ss_pred HHhccccCCCEEEEEcCcCCHHHHHHHHC-C--CCeEEEEcCCHHHHHHHHHhcccC-CceEEEc-----Chh-hccCCC
Confidence 33444455689999999999988887774 2 238999999999999999876542 2222221 222 133346
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
++||+|+++++|+++++....+..+.++++ +||.|++..+.
T Consensus 106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~ 146 (243)
T 3bkw_A 106 DSFDLAYSSLALHYVEDVARLFRTVHQALS-PGGHFVFSTEH 146 (243)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred CCceEEEEeccccccchHHHHHHHHHHhcC-cCcEEEEEeCC
Confidence 789999999999999877776666667665 69999998763
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-11 Score=115.35 Aligned_cols=106 Identities=15% Similarity=0.255 Sum_probs=81.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
++.+|||+|||+|..+..+++.++. ..+|+++|+|+.|++.|++.+...+ ++.++.. ++. .++. .++||+|
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~-----d~~-~~~~-~~~fD~v 93 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPE-GSKYTGIDSGETLLAEARELFRLLPYDSEFLEG-----DAT-EIEL-NDKYDIA 93 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCT-TCEEEEEESCHHHHHHHHHHHHSSSSEEEEEES-----CTT-TCCC-SSCEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEc-----chh-hcCc-CCCeeEE
Confidence 5689999999999999998887762 4689999999999999999876543 2222221 222 1333 4689999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
++.++|+++++....+..+.++++ |||.|+++++.
T Consensus 94 ~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~ 128 (284)
T 3gu3_A 94 ICHAFLLHMTTPETMLQKMIHSVK-KGGKIICFEPH 128 (284)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTEE-EEEEEEEEECC
T ss_pred EECChhhcCCCHHHHHHHHHHHcC-CCCEEEEEecc
Confidence 999999999988766666666665 69999999987
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.1e-11 Score=108.85 Aligned_cols=105 Identities=18% Similarity=0.240 Sum_probs=74.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.++. ....++.++.. ++.. + ...++||+|++
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~----~~~v~~~D~s~~~~~~a~~--~~~~~~~~~~~-----d~~~-~-~~~~~~D~v~~ 113 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLSGL----ADRVTALDGSAEMIAEAGR--HGLDNVEFRQQ-----DLFD-W-TPDRQWDAVFF 113 (218)
T ss_dssp CSEEEEESCTTSHHHHHHHHH----SSEEEEEESCHHHHHHHGG--GCCTTEEEEEC-----CTTS-C-CCSSCEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHh--cCCCCeEEEec-----cccc-C-CCCCceeEEEE
Confidence 469999999999998888775 3589999999999999987 22223333322 2221 2 34678999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCch
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf 211 (462)
+++|+++++ .....+++.+.+. +||.|++++++.+..+
T Consensus 114 ~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 153 (218)
T 3ou2_A 114 AHWLAHVPD-DRFEAFWESVRSAVAPGGVVEFVDVTDHERR 153 (218)
T ss_dssp ESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEECCCC--
T ss_pred echhhcCCH-HHHHHHHHHHHHHcCCCeEEEEEeCCCCccc
Confidence 999999974 3334444444443 7999999999876543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.5e-11 Score=108.71 Aligned_cols=104 Identities=20% Similarity=0.212 Sum_probs=77.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+|||+|..+..+ + ..+++++|+|+.|++.+++.+ .++.++.. ++. .++...++||+|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~--~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~-----d~~-~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----P--YPQKVGVEPSEAMLAVGRRRA---PEATWVRA-----WGE-ALPFPGESFDVVL 100 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----C--CSEEEEECCCHHHHHHHHHHC---TTSEEECC-----CTT-SCCSCSSCEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC----C--CCeEEEEeCCHHHHHHHHHhC---CCcEEEEc-----ccc-cCCCCCCcEEEEE
Confidence 5689999999999877665 2 238999999999999999876 22322221 122 2344567899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCch
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 211 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf 211 (462)
++++|+++++....+..+.++++ +||.|++..+.....+
T Consensus 101 ~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~ 139 (211)
T 2gs9_A 101 LFTTLEFVEDVERVLLEARRVLR-PGGALVVGVLEALSPW 139 (211)
T ss_dssp EESCTTTCSCHHHHHHHHHHHEE-EEEEEEEEEECTTSHH
T ss_pred EcChhhhcCCHHHHHHHHHHHcC-CCCEEEEEecCCcCcH
Confidence 99999999987776667777765 6999999998765444
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-10 Score=110.18 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=75.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-CCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.++..+... .++.++.. +.. .++...++||+|
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~fD~v 108 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIAR----GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQA-----DAR-AIPLPDESVHGV 108 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTT----TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEES-----CTT-SCCSCTTCEEEE
T ss_pred CCCEEEEeCCcCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHhhccCCceEEEEc-----ccc-cCCCCCCCeeEE
Confidence 4579999999999988887763 358999999999999999887221 22222221 222 234456789999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
+++++|+++++....+..+.++++ +||.|+++
T Consensus 109 ~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~ 140 (263)
T 2yqz_A 109 IVVHLWHLVPDWPKVLAEAIRVLK-PGGALLEG 140 (263)
T ss_dssp EEESCGGGCTTHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EECCchhhcCCHHHHHHHHHHHCC-CCcEEEEE
Confidence 999999999877766666666665 69999887
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=106.74 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=75.8
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.++.+|||+|||+|..+..++.. ..+++++|.|+.|++.+++.+.... ++.++.. ++.. ++. .++||
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~-----d~~~-~~~-~~~~D 99 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAAN----GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVV-----DLNN-LTF-DRQYD 99 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEEC-----CGGG-CCC-CCCEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEc-----chhh-CCC-CCCce
Confidence 35679999999999988888773 3489999999999999998765321 2222221 2221 333 67899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
+|++++++++++ .+....+++.+.+. +||.|+++++..+.
T Consensus 100 ~v~~~~~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 141 (199)
T 2xvm_A 100 FILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTA 141 (199)
T ss_dssp EEEEESCGGGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCS
T ss_pred EEEEcchhhhCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccC
Confidence 999999999997 33344455555443 79999998875543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-10 Score=111.15 Aligned_cols=122 Identities=13% Similarity=0.118 Sum_probs=84.3
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 158 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~ 158 (462)
+.+..+...++..++.+|||+|||+|..+..+++..+ .+|+++|+|+.|++.|++.+......+.+... ..++.
T Consensus 51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~--~~d~~- 124 (287)
T 1kpg_A 51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD---VNVVGLTLSKNQANHVQQLVANSENLRSKRVL--LAGWE- 124 (287)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEE--ESCGG-
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEE--ECChh-
Confidence 3445555555444567999999999998888875554 38999999999999999987653311111110 11222
Q ss_pred ccCCCCCcccEEEecccccCCC--CHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 159 DISKSEREHDLVIASYVLGEVP--SLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 159 ~l~~~~~~fDLVias~vL~el~--~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
.++ ++||+|++.++|++++ +....+..+.++++ |||.|++.++..+..
T Consensus 125 ~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~ 174 (287)
T 1kpg_A 125 QFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLHTITGLHP 174 (287)
T ss_dssp GCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEEEEEECCH
T ss_pred hCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcC-CCCEEEEEEecCCCc
Confidence 232 7899999999999994 44555556666665 799999998866543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.1e-11 Score=116.10 Aligned_cols=107 Identities=13% Similarity=0.165 Sum_probs=80.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC----CCCCceecchhHhhhhhccCCCC---
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP----KDLPLIHSYNSIQALNKDISKSE--- 164 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~----~~~~~i~~~~~~~~l~~~l~~~~--- 164 (462)
.+.+|||+|||+|..+..++..++ ...+|+++|+|+.|++.|++.+... .++.++.. ++. .++...
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~-----d~~-~~~~~~~~~ 108 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELK-PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKIS-----SSD-DFKFLGADS 108 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSS-CCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEEC-----CTT-CCGGGCTTT
T ss_pred CCCEEEEECCCCCHHHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEc-----CHH-hCCcccccc
Confidence 568999999999999999987663 3578999999999999999887543 22222222 121 122223
Q ss_pred ---CcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 165 ---REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 165 ---~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
++||+|+++++|+++ +....+..+.++++ +||.|++++.+.
T Consensus 109 ~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~Lk-pgG~l~i~~~~~ 152 (299)
T 3g5t_A 109 VDKQKIDMITAVECAHWF-DFEKFQRSAYANLR-KDGTIAIWGYAD 152 (299)
T ss_dssp TTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEE-EEEEEEEEEEEE
T ss_pred ccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcC-CCcEEEEEecCC
Confidence 789999999999999 78777777777776 699999966543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-10 Score=112.63 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=85.0
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQA 155 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~ 155 (462)
+.+..+...++...+.+|||+|||+|..+..+++.++ .+|+++|+|+.|++.|++.+...+ ++.++.. +
T Consensus 59 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d 130 (302)
T 3hem_A 59 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ-----G 130 (302)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC-----C
T ss_pred HHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-----C
Confidence 3445555555444557999999999999988887654 589999999999999999876532 2222221 2
Q ss_pred hhhccCCCCCcccEEEecccccCCCCH------HHHHHHHHHHHhc--CCCEEEEEecCCCCch
Q 012511 156 LNKDISKSEREHDLVIASYVLGEVPSL------QDRITIVRQLWDL--TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 156 l~~~l~~~~~~fDLVias~vL~el~~~------~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf 211 (462)
+.. + .++||+|++..++++++++ .....+++++.+. |||.|+|.+...+...
T Consensus 131 ~~~-~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 190 (302)
T 3hem_A 131 WEE-F---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKE 190 (302)
T ss_dssp GGG-C---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHH
T ss_pred HHH-c---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCcc
Confidence 221 2 5789999999999999765 3333444444443 7999999998776543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-10 Score=106.51 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=72.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-------CCCceecchhHhhhhhccCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-------DLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-------~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
.+.+|||+|||+|..+..++...+ ..+|+++|+|+.|++.|++.+.... ++.++.. ++. ..+...
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-----d~~-~~~~~~ 100 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKS--FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS-----SLV-YRDKRF 100 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTT--CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC-----CSS-SCCGGG
T ss_pred CCCEEEEecCCCCHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC-----ccc-cccccc
Confidence 457999999999999988887543 3689999999999999998875321 2222211 121 122345
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEe
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVE 204 (462)
++||+|+++++|++++ ......+++++.+. +||.+|++.
T Consensus 101 ~~fD~V~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 101 SGYDAATVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp TTCSEEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred CCCCEEEEHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 6899999999999996 44444555555543 688655543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=112.17 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=83.3
Q ss_pred HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHH------HHHHHHHhhcCCCCCCceecchhHhh-h-hh
Q 012511 87 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQS------MQRAGQSLMQGPKDLPLIHSYNSIQA-L-NK 158 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~------ml~~Ak~ll~~~~~~~~i~~~~~~~~-l-~~ 158 (462)
.++..++.+|||+|||+|..+..++...+ ...+|+++|+|+. |++.|++.+......+.+... ..+ + ..
T Consensus 38 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~g-~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~ 114 (275)
T 3bkx_A 38 AWQVKPGEKILEIGCGQGDLSAVLADQVG-SSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVH--FNTNLSDD 114 (275)
T ss_dssp HHTCCTTCEEEEESCTTSHHHHHHHHHHC-TTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEE--CSCCTTTC
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEE--ECChhhhc
Confidence 33333567999999999999988887653 1358999999997 999999887653211111110 011 1 11
Q ss_pred ccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 159 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 159 ~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
.++...++||+|++.++|+++++.....+.++.|.+ +||.|++.+...+.
T Consensus 115 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~-~gG~l~~~~~~~~~ 164 (275)
T 3bkx_A 115 LGPIADQHFDRVVLAHSLWYFASANALALLFKNMAA-VCDHVDVAEWSMQP 164 (275)
T ss_dssp CGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTT-TCSEEEEEEECSSC
T ss_pred cCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhC-CCCEEEEEEecCCC
Confidence 233346789999999999999988776666666654 69999999976643
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=106.14 Aligned_cols=103 Identities=20% Similarity=0.280 Sum_probs=74.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|+.... ++.++... +. .++...++||+|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~d-----~~-~~~~~~~~fD~v~~ 108 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL----GHQIEGLEPATRLVELARQTHP---SVTFHHGT-----IT-DLSDSPKRWAGLLA 108 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT----TCCEEEECCCHHHHHHHHHHCT---TSEEECCC-----GG-GGGGSCCCEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHHhCC---CCeEEeCc-----cc-ccccCCCCeEEEEe
Confidence 579999999999998888774 3489999999999999998743 23333221 21 13334679999999
Q ss_pred cccccCCC--CHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 173 SYVLGEVP--SLQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 173 s~vL~el~--~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
.++|++++ +....+..+.++++ +||.|++..+..+.
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~ 146 (203)
T 3h2b_A 109 WYSLIHMGPGELPDALVALRMAVE-DGGGLLMSFFSGPS 146 (203)
T ss_dssp ESSSTTCCTTTHHHHHHHHHHTEE-EEEEEEEEEECCSS
T ss_pred hhhHhcCCHHHHHHHHHHHHHHcC-CCcEEEEEEccCCc
Confidence 99999997 34444444444444 69999998876543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=112.20 Aligned_cols=107 Identities=14% Similarity=0.272 Sum_probs=82.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+..++...+ ..+|+++|+|+.|++.|+..+.... ++.++.. ++. .++...++||+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~fD~ 108 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNP--DAEITSIDISPESLEKARENTEKNGIKNVKFLQA-----NIF-SLPFEDSSFDH 108 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC-----CGG-GCCSCTTCEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEc-----ccc-cCCCCCCCeeE
Confidence 457999999999999998888765 3589999999999999998875432 2222221 222 23445679999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
|+++++|+++++....+..+.++++ |||.|+++++..
T Consensus 109 v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~ 145 (276)
T 3mgg_A 109 IFVCFVLEHLQSPEEALKSLKKVLK-PGGTITVIEGDH 145 (276)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECG
T ss_pred EEEechhhhcCCHHHHHHHHHHHcC-CCcEEEEEEcCC
Confidence 9999999999988877777777776 699999998643
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=108.12 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=74.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|++. .+..++... ..++.........+||+|+
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~--~~~~~~~~~~~~~~fD~v~ 121 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADR----GIEAVGVDGDRTLVDAARAA----GAGEVHLAS--YAQLAEAKVPVGKDYDLIC 121 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTT----TCEEEEEESCHHHHHHHHHT----CSSCEEECC--HHHHHTTCSCCCCCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHC----CCEEEEEcCCHHHHHHHHHh----cccccchhh--HHhhcccccccCCCccEEE
Confidence 4589999999999998888763 35899999999999999876 222222211 1222211112345699999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
++++|+ ..+....+..+.++++ +||.|++.++..
T Consensus 122 ~~~~l~-~~~~~~~l~~~~~~L~-pgG~l~~~~~~~ 155 (227)
T 3e8s_A 122 ANFALL-HQDIIELLSAMRTLLV-PGGALVIQTLHP 155 (227)
T ss_dssp EESCCC-SSCCHHHHHHHHHTEE-EEEEEEEEECCT
T ss_pred ECchhh-hhhHHHHHHHHHHHhC-CCeEEEEEecCc
Confidence 999999 6666666666666665 699999988754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.6e-10 Score=110.79 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=71.4
Q ss_pred CCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc-CCCCCcc
Q 012511 89 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI-SKSEREH 167 (462)
Q Consensus 89 p~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l-~~~~~~f 167 (462)
+...+.+|||+|||+|..+..+++. ..+|++||+|+.|++.|++.+... .+... +.++.... ....++|
T Consensus 42 ~l~~g~~VLDlGcGtG~~a~~La~~----g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~--~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 42 NIVPGSTVAVIGASTRFLIEKALER----GASVTVFDFSQRMCDDLAEALADR----CVTID--LLDITAEIPKELAGHF 111 (261)
T ss_dssp TCCTTCEEEEECTTCHHHHHHHHHT----TCEEEEEESCHHHHHHHHHHTSSS----CCEEE--ECCTTSCCCGGGTTCC
T ss_pred CCCCcCEEEEEeCcchHHHHHHHhc----CCEEEEEECCHHHHHHHHHHHHhc----cceee--eeecccccccccCCCc
Confidence 3334579999999999998888763 458999999999999999987653 11111 11111100 1124689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc-CCCEEEEEec
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEP 205 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~-~gG~LVlVEp 205 (462)
|+|+++++|+++. .++...+++.+.+. |||.|++-.+
T Consensus 112 D~Vv~~~~l~~~~-~~~~~~~l~~l~~lLPGG~l~lS~~ 149 (261)
T 3iv6_A 112 DFVLNDRLINRFT-TEEARRACLGMLSLVGSGTVRASVK 149 (261)
T ss_dssp SEEEEESCGGGSC-HHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cEEEEhhhhHhCC-HHHHHHHHHHHHHhCcCcEEEEEec
Confidence 9999999999996 44433344443322 7999988543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.3e-11 Score=106.14 Aligned_cols=100 Identities=11% Similarity=0.188 Sum_probs=76.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+|||+|..+..+.... .+++++|.|+.|++.+++.. .++.++.. + .+...++||+|+
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~~---~~v~~~~~-----d----~~~~~~~~D~v~ 80 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFA----TKLYCIDINVIALKEVKEKF---DSVITLSD-----P----KEIPDNSVDFIL 80 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTE----EEEEEECSCHHHHHHHHHHC---TTSEEESS-----G----GGSCTTCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhhc----CeEEEEeCCHHHHHHHHHhC---CCcEEEeC-----C----CCCCCCceEEEE
Confidence 45699999999999888888643 48999999999999999872 23332221 1 334567899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
++++++++++....+..+.++++ +||.|++++....
T Consensus 81 ~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~ 116 (170)
T 3i9f_A 81 FANSFHDMDDKQHVISEVKRILK-DDGRVIIIDWRKE 116 (170)
T ss_dssp EESCSTTCSCHHHHHHHHHHHEE-EEEEEEEEEECSS
T ss_pred EccchhcccCHHHHHHHHHHhcC-CCCEEEEEEcCcc
Confidence 99999999877766666666665 6999999986543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.1e-11 Score=111.77 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=72.5
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
+.+|||+|||+|..+..+++. ..+|+++|+|+.|++.++.. +.++... ..++. .+...++||+|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~------~~~~~~d--~~~~~--~~~~~~~fD~i~~ 107 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEE----GIESIGVDINEDMIKFCEGK------FNVVKSD--AIEYL--KSLPDKYLDGVMI 107 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHH----TCCEEEECSCHHHHHHHHTT------SEEECSC--HHHHH--HTSCTTCBSEEEE
T ss_pred CCeEEEEeCCCCHHHHHHHhC----CCcEEEEECCHHHHHHHHhh------cceeecc--HHHHh--hhcCCCCeeEEEE
Confidence 479999999999998887774 24799999999999999865 2222211 11111 1335679999999
Q ss_pred cccccCCCCH--HHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 173 SYVLGEVPSL--QDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 173 s~vL~el~~~--~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
.++|++++.+ ...+..+.++++ +||.|++..++.
T Consensus 108 ~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~ 143 (240)
T 3dli_A 108 SHFVEHLDPERLFELLSLCYSKMK-YSSYIVIESPNP 143 (240)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHBC-TTCCEEEEEECT
T ss_pred CCchhhCCcHHHHHHHHHHHHHcC-CCcEEEEEeCCc
Confidence 9999999843 444555555554 799999988864
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.14 E-value=4e-10 Score=106.09 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=76.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|..+..+.... .+++++|+|+.|++.|++.+.+ +.++.. ++. .++. ..+||+|+
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~----~~v~~~D~s~~~~~~a~~~~~~---~~~~~~-----d~~-~~~~-~~~~D~v~ 105 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEF----GDTAGLELSEDMLTHARKRLPD---ATLHQG-----DMR-DFRL-GRKFSAVV 105 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHH----SEEEEEESCHHHHHHHHHHCTT---CEEEEC-----CTT-TCCC-SSCEEEEE
T ss_pred CCCeEEEecccCCHHHHHHHHhC----CcEEEEeCCHHHHHHHHHhCCC---CEEEEC-----CHH-Hccc-CCCCcEEE
Confidence 45799999999999988887753 3799999999999999987532 333222 122 1232 56899999
Q ss_pred ecc-cccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 172 ASY-VLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 172 as~-vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
+++ +++++++......+++++.+. +||.|++.++..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 146 (239)
T 3bxo_A 106 SMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPE 146 (239)
T ss_dssp ECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred EcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcc
Confidence 655 999998777777777777664 79999987655443
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.14 E-value=4.6e-10 Score=105.90 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=86.1
Q ss_pred chhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceec
Q 012511 71 PAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHS 149 (462)
Q Consensus 71 p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~ 149 (462)
...|......+.++.... ..++.+|||+|||+|..+..+++. ..+++++|+|+.|++.|+..+.... ++.++..
T Consensus 17 ~~~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~----~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 91 (246)
T 1y8c_A 17 DVDYKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQ 91 (246)
T ss_dssp SCCHHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGG----SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECC
T ss_pred cccHHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHC----CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEec
Confidence 345666666555555433 125689999999999988877764 3589999999999999998875432 2333221
Q ss_pred chhHhhhhhccCCCCCcccEEEecc-cccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 150 YNSIQALNKDISKSEREHDLVIASY-VLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 150 ~~~~~~l~~~l~~~~~~fDLVias~-vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
++.. ++.. ++||+|++++ +|+++++......+++++.+. +||.|++.-+
T Consensus 92 -----d~~~-~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 92 -----DISN-LNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp -----CGGG-CCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -----cccc-CCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 2221 2323 7899999998 999997666666777777664 7999987443
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=110.32 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=77.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+|||+|..+..+++..+ .+|+++|+|+.|++.|+..+....- +.++.. ++. .++...++||
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~fD 116 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADYVK---GQITGIDLFPDFIEIFNENAVKANCADRVKGITG-----SMD-NLPFQNEELD 116 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCC---SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-----CTT-SCSSCTTCEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC-----Chh-hCCCCCCCEE
Confidence 346999999999999998888764 2899999999999999988764321 222221 221 2344567999
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+|++.++|+++ +....+..+.++++ |||.|++.++.
T Consensus 117 ~v~~~~~l~~~-~~~~~l~~~~~~L~-pgG~l~~~~~~ 152 (257)
T 3f4k_A 117 LIWSEGAIYNI-GFERGMNEWSKYLK-KGGFIAVSEAS 152 (257)
T ss_dssp EEEEESCSCCC-CHHHHHHHHHTTEE-EEEEEEEEEEE
T ss_pred EEEecChHhhc-CHHHHHHHHHHHcC-CCcEEEEEEee
Confidence 99999999999 56665555555554 79999999864
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=106.52 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=76.4
Q ss_pred CCCeEEEECCch---hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhH-hhh------hhccC
Q 012511 92 SPAKVLDFGAGT---GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSI-QAL------NKDIS 161 (462)
Q Consensus 92 ~p~rVLDvG~G~---G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~-~~l------~~~l~ 161 (462)
...+|||+|||+ |..+..+...++ ..+|++||.|+.|++.|++++....++.++.....- ..+ ...++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p--~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNP--DARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCT--TCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCC--CCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence 347999999999 987777777665 358999999999999999988643333333322100 000 01122
Q ss_pred CCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 162 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
..+||+|+++++||++++. +...+++++.+. +||+|+|.+...
T Consensus 155 --~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 155 --FSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp --TTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred --CCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 2479999999999999863 334455555442 799999998764
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.4e-10 Score=107.49 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=76.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+|||+|..+..++...+ +|++||+|+.|++.|++.+.. .++.++.....-......++ ....||+|+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~----~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~~-~~~~~d~v~ 129 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFP----RVIGLDVSKSALEIAAKENTA-ANISYRLLDGLVPEQAAQIH-SEIGDANIY 129 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSS----CEEEEESCHHHHHHHHHHSCC-TTEEEEECCTTCHHHHHHHH-HHHCSCEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCC----CEEEEECCHHHHHHHHHhCcc-cCceEEECcccccccccccc-cccCccEEE
Confidence 347999999999999988887543 799999999999999988742 23333322100000000010 112499999
Q ss_pred ecccccCCC--CHHHHHHHHHHHHhcCCCEEEEEecCCCCch
Q 012511 172 ASYVLGEVP--SLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 211 (462)
Q Consensus 172 as~vL~el~--~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf 211 (462)
++.++++++ +....+..+.++++ +||.|+|++.+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~ 170 (245)
T 3ggd_A 130 MRTGFHHIPVEKRELLGQSLRILLG-KQGAMYLIELGTGCID 170 (245)
T ss_dssp EESSSTTSCGGGHHHHHHHHHHHHT-TTCEEEEEEECTTHHH
T ss_pred EcchhhcCCHHHHHHHHHHHHHHcC-CCCEEEEEeCCccccH
Confidence 999999997 33344455555554 7999999999887653
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.13 E-value=9.5e-11 Score=119.84 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=81.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC----------CCCCceecchhHhhhhh--c
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP----------KDLPLIHSYNSIQALNK--D 159 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~----------~~~~~i~~~~~~~~l~~--~ 159 (462)
.+.+|||+|||+|..+..++..++ ...+|+++|+|+.|++.|++.++.. .++.++... ...+.. .
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d--~~~l~~~~~ 159 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVG-EHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGF--IENLATAEP 159 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHT-TTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESC--TTCGGGCBS
T ss_pred CCCEEEEecCccCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEcc--HHHhhhccc
Confidence 467999999999999988888764 2358999999999999999876421 223333221 111110 0
Q ss_pred cCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 160 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
.+...++||+|+++++|+++++....+..+.++++ |||.|++.++...
T Consensus 160 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~ 207 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLR-DGGELYFSDVYAD 207 (383)
T ss_dssp CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEES
T ss_pred CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcC-CCCEEEEEEeccc
Confidence 04456799999999999999987776777777776 6999999886554
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=110.66 Aligned_cols=107 Identities=14% Similarity=0.235 Sum_probs=74.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..++... ..+|+++|+|+.|++.|++.+.... ++.++.. ++. .++...++||+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~fD~ 149 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL---FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCC-----GLQ-DFTPEPDSYDV 149 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT---CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEEC-----CGG-GCCCCSSCEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEc-----Chh-hcCCCCCCEEE
Confidence 46899999999999888766533 3589999999999999998876431 1112211 222 23334568999
Q ss_pred EEecccccCCCCHH--HHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 170 VIASYVLGEVPSLQ--DRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 170 Vias~vL~el~~~~--~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
|++.++|++++++. ..+..+.++++ +||.|++.++..+
T Consensus 150 v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~ 189 (241)
T 2ex4_A 150 IWIQWVIGHLTDQHLAEFLRRCKGSLR-PNGIIVIKDNMAQ 189 (241)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEBS
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEEccCC
Confidence 99999999997432 33334444443 7999999887544
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.4e-10 Score=104.31 Aligned_cols=109 Identities=18% Similarity=0.264 Sum_probs=76.4
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
.+..+...++ .+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.++..+. +.++.. ++. .
T Consensus 33 ~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~----~~~~~~-----d~~-~ 96 (211)
T 3e23_A 33 TLTKFLGELP--AGAKILELGCGAGYQAEAMLAA----GFDVDATDGSPELAAEASRRLG----RPVRTM-----LFH-Q 96 (211)
T ss_dssp HHHHHHTTSC--TTCEEEESSCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHT----SCCEEC-----CGG-G
T ss_pred HHHHHHHhcC--CCCcEEEECCCCCHHHHHHHHc----CCeEEEECCCHHHHHHHHHhcC----CceEEe-----eec-c
Confidence 3344443333 3579999999999999888873 3589999999999999998762 222221 122 2
Q ss_pred cCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 160 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
++ ..++||+|+++++|++++ .++...+++.+.+. +||.|++..+.
T Consensus 97 ~~-~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 97 LD-AIDAYDAVWAHACLLHVP-RDELADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp CC-CCSCEEEEEECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CC-CCCcEEEEEecCchhhcC-HHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 33 567899999999999997 44444455554443 79999997653
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.6e-10 Score=111.13 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=83.8
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 158 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~ 158 (462)
+.+..+...++..++.+|||+|||+|..+..+++.++ .+|+++|+|+.|++.|++.+........+... ..++.
T Consensus 77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~--~~d~~- 150 (318)
T 2fk8_A 77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD---VNVIGLTLSKNQHARCEQVLASIDTNRSRQVL--LQGWE- 150 (318)
T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEE--ESCGG-
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEE--ECChH-
Confidence 3445555555544567999999999998888777543 38999999999999999987654311111110 11222
Q ss_pred ccCCCCCcccEEEecccccCCC--CHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 159 DISKSEREHDLVIASYVLGEVP--SLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 159 ~l~~~~~~fDLVias~vL~el~--~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
.+ +++||+|++..+|++++ +....+..+.++++ |||.|++.++..+..
T Consensus 151 ~~---~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~ 200 (318)
T 2fk8_A 151 DF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQSSVSYHP 200 (318)
T ss_dssp GC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEEEEECCCH
T ss_pred HC---CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcC-CCcEEEEEEeccCCc
Confidence 12 26899999999999995 33444445555554 799999999877654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=9.6e-11 Score=113.04 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=77.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
++.+|||+|||+|..+..+++. + ..+|+++|+|+.|++.|++.+.... ++.++.. ++. .++...++||
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~-~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~-~~~~~~~~fD 116 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGH-V--TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVG-----SMD-DLPFRNEELD 116 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTT-C--SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-----CTT-SCCCCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-c--CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEc-----Chh-hCCCCCCCEE
Confidence 4589999999999999888875 2 3589999999999999998875432 1222221 222 2344567899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+|++.++++++ +....+..+.++++ |||.|++.++.
T Consensus 117 ~i~~~~~~~~~-~~~~~l~~~~~~Lk-pgG~l~~~~~~ 152 (267)
T 3kkz_A 117 LIWSEGAIYNI-GFERGLNEWRKYLK-KGGYLAVSECS 152 (267)
T ss_dssp EEEESSCGGGT-CHHHHHHHHGGGEE-EEEEEEEEEEE
T ss_pred EEEEcCCceec-CHHHHHHHHHHHcC-CCCEEEEEEee
Confidence 99999999999 56665555555554 69999999874
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.4e-11 Score=116.78 Aligned_cols=126 Identities=18% Similarity=0.179 Sum_probs=81.6
Q ss_pred chhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC------CC
Q 012511 71 PAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK------DL 144 (462)
Q Consensus 71 p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~------~~ 144 (462)
...+......|.++.... .+.+|||+|||+|..+..+++. ..+|+++|+|+.|++.|++.+.... ++
T Consensus 39 ~~~~~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~ 111 (293)
T 3thr_A 39 RSRTAEYKAWLLGLLRQH---GCHRVLDVACGTGVDSIMLVEE----GFSVTSVDASDKMLKYALKERWNRRKEPAFDKW 111 (293)
T ss_dssp SCBCHHHHHHHHHHHHHT---TCCEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTC
T ss_pred cchHHHHHHHHHHHhccc---CCCEEEEecCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHhhhhccccccccee
Confidence 344444555555444332 3579999999999998888773 3489999999999999987653211 11
Q ss_pred CceecchhHhhhhhccCCCCCcccEEEec-ccccCCCC----HHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 145 PLIHSYNSIQALNKDISKSEREHDLVIAS-YVLGEVPS----LQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 145 ~~i~~~~~~~~l~~~l~~~~~~fDLVias-~vL~el~~----~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
.+.... ...+...+ ...++||+|++. ++|+++++ .++...+++++.+. +||.|++..+.
T Consensus 112 ~~~~~d--~~~~~~~~-~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 112 VIEEAN--WLTLDKDV-PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEEECC--GGGHHHHS-CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eEeecC--hhhCcccc-ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 111111 11111111 345789999998 99999987 24444455555543 79999998774
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-10 Score=113.22 Aligned_cols=115 Identities=12% Similarity=0.051 Sum_probs=82.5
Q ss_pred HHHHCC-CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhc
Q 012511 84 VRRRLP-GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKD 159 (462)
Q Consensus 84 L~~rlp-~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~ 159 (462)
+...++ ...+.+|||+|||+|..+..+++.++ .+|+++|+|+.|++.|++.+.... ++.++.. ++. .
T Consensus 108 l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~-~ 178 (312)
T 3vc1_A 108 LMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG---SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC-----NML-D 178 (312)
T ss_dssp HHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-----CTT-S
T ss_pred HHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC-----Chh-c
Confidence 444444 23457999999999999888877543 589999999999999998876432 2222221 222 2
Q ss_pred cCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 160 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
++...++||+|++..+|+++. ....+..+.++++ +||.|+++++....
T Consensus 179 ~~~~~~~fD~V~~~~~l~~~~-~~~~l~~~~~~Lk-pgG~l~~~~~~~~~ 226 (312)
T 3vc1_A 179 TPFDKGAVTASWNNESTMYVD-LHDLFSEHSRFLK-VGGRYVTITGCWNP 226 (312)
T ss_dssp CCCCTTCEEEEEEESCGGGSC-HHHHHHHHHHHEE-EEEEEEEEEEEECT
T ss_pred CCCCCCCEeEEEECCchhhCC-HHHHHHHHHHHcC-CCcEEEEEEccccc
Confidence 344567999999999999994 6665666666665 69999999875544
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=112.39 Aligned_cols=102 Identities=14% Similarity=-0.007 Sum_probs=70.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC-------------------CCCCCceecchh
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG-------------------PKDLPLIHSYNS 152 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~-------------------~~~~~~i~~~~~ 152 (462)
.+.+|||+|||+|..+..+++. ..+|++||+|+.|++.|++.... ..++.++..
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~----G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--- 140 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR----GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCC--- 140 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT----TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES---
T ss_pred CCCeEEEeCCCCcHHHHHHHHC----CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEEC---
Confidence 4579999999999888777762 35899999999999999876531 112222221
Q ss_pred HhhhhhccCCC-CCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEe
Q 012511 153 IQALNKDISKS-EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 153 ~~~l~~~l~~~-~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVE 204 (462)
++. .++.. .++||+|++..+|++++ ...+..+++++.+. |||.|+|+.
T Consensus 141 --D~~-~l~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 141 --SIF-DLPRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp --CTT-TGGGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred --ccc-cCCcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 222 12222 26899999999999996 55555555555553 799997654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-10 Score=110.60 Aligned_cols=108 Identities=12% Similarity=0.098 Sum_probs=73.6
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.++.+|||+|||+|..+..++. ...+|+++|+|+.|++.|++.+........+.. ...++.. ++ ...+||+|
T Consensus 65 ~~~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~-~~-~~~~fD~v 136 (235)
T 3lcc_A 65 LPLGRALVPGCGGGHDVVAMAS----PERFVVGLDISESALAKANETYGSSPKAEYFSF--VKEDVFT-WR-PTELFDLI 136 (235)
T ss_dssp SCCEEEEEETCTTCHHHHHHCB----TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEE--ECCCTTT-CC-CSSCEEEE
T ss_pred CCCCCEEEeCCCCCHHHHHHHh----CCCeEEEEECCHHHHHHHHHHhhccCCCcceEE--EECchhc-CC-CCCCeeEE
Confidence 3457999999999998887765 356899999999999999998865321111110 0112221 22 34589999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
+++++|++++ .+.+..+++.+.+. +||.|++++...
T Consensus 137 ~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 137 FDYVFFCAIE-PEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp EEESSTTTSC-GGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred EEChhhhcCC-HHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 9999999997 33334444444442 799999987643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-10 Score=100.57 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=71.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+|||+|..+..++..++ ..+|+++|+|+.|++.|++.+.... ++ .+.. +....++...++||
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~-----d~~~~~~~~~~~~D 96 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTP--QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQ-----GAPRAFDDVPDNPD 96 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSS--SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEEC-----CTTGGGGGCCSCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCC--CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEec-----chHhhhhccCCCCC
Confidence 456999999999999998887664 4689999999999999999876543 22 2221 12122332236899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+|++++++++ ...+..+.++++ +||.|++....
T Consensus 97 ~i~~~~~~~~----~~~l~~~~~~L~-~gG~l~~~~~~ 129 (178)
T 3hm2_A 97 VIFIGGGLTA----PGVFAAAWKRLP-VGGRLVANAVT 129 (178)
T ss_dssp EEEECC-TTC----TTHHHHHHHTCC-TTCEEEEEECS
T ss_pred EEEECCcccH----HHHHHHHHHhcC-CCCEEEEEeec
Confidence 9999999987 222334444443 79999987764
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-10 Score=112.62 Aligned_cols=116 Identities=12% Similarity=0.025 Sum_probs=72.6
Q ss_pred CCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCc------eec---c--------
Q 012511 89 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPL------IHS---Y-------- 150 (462)
Q Consensus 89 p~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~------i~~---~-------- 150 (462)
+..++.+|||||||+|..+..++.. ...+|+++|.|+.|++.|++.++... .... +.. .
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~---~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~ 128 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD---SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE 128 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG---TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh---hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHH
Confidence 3445679999999999654433321 23579999999999999998775432 1100 000 0
Q ss_pred ---------hhHhhhhhccC---CCCCcccEEEecccccCC-CCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 151 ---------NSIQALNKDIS---KSEREHDLVIASYVLGEV-PSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 151 ---------~~~~~l~~~l~---~~~~~fDLVias~vL~el-~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
....++....+ ....+||+|+++++|+++ ++..+...+++++.+. |||.||+.....
T Consensus 129 ~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~ 200 (263)
T 2a14_A 129 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 200 (263)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 00011111111 124689999999999986 4455555666666554 799999987543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.9e-10 Score=105.35 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=75.6
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-CCCCceecchhHhhhhhc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-~~~~~i~~~~~~~~l~~~ 159 (462)
+..+...++. +.+|||+|||+|..+..+.... .+++++|+|+.|++.|+..+... .++.++.. ++. .
T Consensus 29 ~~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----d~~-~ 96 (227)
T 1ve3_A 29 EPLLMKYMKK--RGKVLDLACGVGGFSFLLEDYG----FEVVGVDISEDMIRKAREYAKSRESNVEFIVG-----DAR-K 96 (227)
T ss_dssp HHHHHHSCCS--CCEEEEETCTTSHHHHHHHHTT----CEEEEEESCHHHHHHHHHHHHHTTCCCEEEEC-----CTT-S
T ss_pred HHHHHHhcCC--CCeEEEEeccCCHHHHHHHHcC----CEEEEEECCHHHHHHHHHHHHhcCCCceEEEC-----chh-c
Confidence 3444444432 6799999999999988887753 28999999999999999877533 22333322 222 1
Q ss_pred cCCCCCcccEEEecccccCCC--CHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 160 ISKSEREHDLVIASYVLGEVP--SLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~--~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
++...++||+|+++.+++... +....+..+.++++ +||.|+++++..
T Consensus 97 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~ 145 (227)
T 1ve3_A 97 LSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLK-PSGKFIMYFTDL 145 (227)
T ss_dssp CCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEE-EEEEEEEEEECH
T ss_pred CCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcC-CCcEEEEEecCh
Confidence 233456899999999955443 22333344444443 799999998753
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-10 Score=118.64 Aligned_cols=116 Identities=16% Similarity=0.239 Sum_probs=82.1
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
....+...++...+.+|||+|||+|..+..+.+. ..+|+++|+|+.|++.|++. + .+....... ......
T Consensus 95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~----g~~v~gvD~s~~~~~~a~~~--~---~~~~~~~~~-~~~~~~ 164 (416)
T 4e2x_A 95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA----GVRHLGFEPSSGVAAKAREK--G---IRVRTDFFE-KATADD 164 (416)
T ss_dssp HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT----TCEEEEECCCHHHHHHHHTT--T---CCEECSCCS-HHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc----CCcEEEECCCHHHHHHHHHc--C---CCcceeeec-hhhHhh
Confidence 4445555554334579999999999988888763 34899999999999999865 1 221111111 111112
Q ss_pred cCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 160 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
++...++||+|++.++|+|+++....+..+.++++ +||.|++..+.
T Consensus 165 l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~ 210 (416)
T 4e2x_A 165 VRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLA-PDGVFVFEDPY 210 (416)
T ss_dssp HHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred cccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcC-CCeEEEEEeCC
Confidence 33345789999999999999988887777777776 69999987664
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-10 Score=110.92 Aligned_cols=104 Identities=15% Similarity=0.182 Sum_probs=74.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|+..+.... ++.++.. ++.. ++. .++||+|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~----g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----d~~~-~~~-~~~fD~i 188 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL----GYDVTSWDHNENSIAFLNETKEKENLNISTALY-----DINA-ANI-QENYDFI 188 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEEC-----CGGG-CCC-CSCEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEe-----cccc-ccc-cCCccEE
Confidence 4579999999999998888874 3489999999999999998876432 2222221 2221 222 6789999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
+++.+|++++ ......+++++.+. +||.|+++....
T Consensus 189 ~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 226 (286)
T 3m70_A 189 VSTVVFMFLN-RERVPSIIKNMKEHTNVGGYNLIVAAMS 226 (286)
T ss_dssp EECSSGGGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EEccchhhCC-HHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 9999999996 44444455555443 799988876543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.3e-10 Score=104.69 Aligned_cols=108 Identities=13% Similarity=0.154 Sum_probs=75.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+|||+|..+..++..- ..+++++|+|+.|++.+++.+....++.++.. ++. .++...++||+|+
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~-----d~~-~~~~~~~~fD~v~ 112 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGG---FPNVTSVDYSSVVVAAMQACYAHVPQLRWETM-----DVR-KLDFPSASFDVVL 112 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTT---CCCEEEEESCHHHHHHHHHHTTTCTTCEEEEC-----CTT-SCCSCSSCEEEEE
T ss_pred CCCeEEEECCCCcHHHHHHHHcC---CCcEEEEeCCHHHHHHHHHhcccCCCcEEEEc-----chh-cCCCCCCcccEEE
Confidence 35799999999999888877742 23899999999999999988765333333322 122 1234457899999
Q ss_pred ecccccCCCC------------HHHHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 172 ASYVLGEVPS------------LQDRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 172 as~vL~el~~------------~~~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
++.+++++.. ......+++.+.+. +||.+++++++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred ECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 9999877641 22333444444442 7999999998764
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-09 Score=97.03 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=71.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..++.. ..+|+++|.|+.|++.|++.++.. .++.++... ...+. ....++||+
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~--~~~l~---~~~~~~fD~ 92 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL----SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDG--HENLD---HYVREPIRA 92 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT----SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESC--GGGGG---GTCCSCEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCc--HHHHH---hhccCCcCE
Confidence 3579999999999999888864 468999999999999999887642 223333211 11111 123568999
Q ss_pred EEecc-cccC-----CCCHHHHHHHHHHHHhc--CCCEEEEEec-CCCCchHHHHHHHHH
Q 012511 170 VIASY-VLGE-----VPSLQDRITIVRQLWDL--TRDVLVLVEP-GTPQGSSIISQMRSH 220 (462)
Q Consensus 170 Vias~-vL~e-----l~~~~~r~~~i~~Lw~~--~gG~LVlVEp-Gtp~Gf~~I~~aR~~ 220 (462)
|+++. .+.+ ..........++.+.+. +||.|+++.. +.+.|........++
T Consensus 93 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 152 (185)
T 3mti_A 93 AIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEY 152 (185)
T ss_dssp EEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHH
T ss_pred EEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHH
Confidence 98873 2222 01233444455555443 7999988765 455666554444444
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-09 Score=104.53 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=73.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+|||+|..+..+++. ..+++++|+|+.|++.|+..... + ++.. ++. .++...++||+|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~--~--~~~~-----d~~-~~~~~~~~fD~v~ 119 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER----GFEVVLVDPSKEMLEVAREKGVK--N--VVEA-----KAE-DLPFPSGAFEAVL 119 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT----TCEEEEEESCHHHHHHHHHHTCS--C--EEEC-----CTT-SCCSCTTCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHc----CCeEEEEeCCHHHHHHHHhhcCC--C--EEEC-----cHH-HCCCCCCCEEEEE
Confidence 5689999999999998887763 35899999999999999987652 1 2221 122 2344567899999
Q ss_pred ecccccCC-CCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 172 ASYVLGEV-PSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 172 as~vL~el-~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+.+++.++ ++....+..+.++++ +||.|++..++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~ 154 (260)
T 2avn_A 120 ALGDVLSYVENKDKAFSEIRRVLV-PDGLLIATVDN 154 (260)
T ss_dssp ECSSHHHHCSCHHHHHHHHHHHEE-EEEEEEEEEEB
T ss_pred EcchhhhccccHHHHHHHHHHHcC-CCeEEEEEeCC
Confidence 99876655 555555556666665 69999998775
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-10 Score=111.68 Aligned_cols=117 Identities=13% Similarity=0.122 Sum_probs=75.3
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC----------------
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---------------- 143 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---------------- 143 (462)
.|.++... +..++.+|||+|||+|..+..++... ..+|+++|+|+.|++.|++.+.....
T Consensus 45 ~l~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (265)
T 2i62_A 45 NLFKIFCL-GAVKGELLIDIGSGPTIYQLLSACES---FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEG 120 (265)
T ss_dssp HHHHHHHS-SSCCEEEEEEESCTTCCGGGTTGGGT---EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTT
T ss_pred HHHHHhcc-cccCCCEEEEECCCccHHHHHHhhcc---cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccc
Confidence 34444433 44566899999999998776655421 24899999999999999988765321
Q ss_pred ---------------C-CceecchhHhhhhhccCCCC---CcccEEEecccccCCCC-HHHHHHHHHHHHhc--CCCEEE
Q 012511 144 ---------------L-PLIHSYNSIQALNKDISKSE---REHDLVIASYVLGEVPS-LQDRITIVRQLWDL--TRDVLV 201 (462)
Q Consensus 144 ---------------~-~~i~~~~~~~~l~~~l~~~~---~~fDLVias~vL~el~~-~~~r~~~i~~Lw~~--~gG~LV 201 (462)
+ .++. .++....+... ++||+|+++++|+++.. ......+++++.+. |||.|+
T Consensus 121 ~~~~~~~~~~~l~~~v~~~~~-----~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li 195 (265)
T 2i62_A 121 NRMKGPEKEEKLRRAIKQVLK-----CDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLV 195 (265)
T ss_dssp TCSCHHHHHHHHHHHEEEEEE-----CCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cccchHHHHHHhhhhheeEEE-----eeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEE
Confidence 1 1111 11221111123 68999999999995542 23344455555543 799999
Q ss_pred EEec
Q 012511 202 LVEP 205 (462)
Q Consensus 202 lVEp 205 (462)
+.+.
T Consensus 196 ~~~~ 199 (265)
T 2i62_A 196 MVDA 199 (265)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9884
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-10 Score=113.05 Aligned_cols=48 Identities=15% Similarity=0.307 Sum_probs=41.0
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+.+.+|||+|||+|..+..++..++. .+|++||+|+.|++.|++.+..
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~--~~v~gvDis~~~i~~A~~~~~~ 92 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGP--SRMVGLDIDSRLIHSARQNIRH 92 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCC--SEEEEEESCHHHHHHHHHTC--
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHHHHh
Confidence 35689999999999999999988763 5899999999999999987654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=101.16 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=73.4
Q ss_pred CCCeEEEECCchhHH-HHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-CCCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSA-FWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~-~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|.. +..+.. ...+|+++|+|+.|++.|+..+... .++.++.. ++. .++...++||+
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~fD~ 92 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVE----DGYKTYGIEISDLQLKKAENFSRENNFKLNISKG-----DIR-KLPFKDESMSF 92 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHH----TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEEC-----CTT-SCCSCTTCEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHh----CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEC-----chh-hCCCCCCceeE
Confidence 357999999999975 333333 2358999999999999999876432 22333322 122 23344678999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
|++++++++++ ..+...+++++.+. +||.|++.+...+
T Consensus 93 v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 93 VYSYGTIFHMR-KNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp EEECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred EEEcChHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 99999999995 55555555555543 7999999887653
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.6e-10 Score=110.49 Aligned_cols=108 Identities=14% Similarity=0.206 Sum_probs=74.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC---------CCCCceecchhHhhhhhc---
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---------KDLPLIHSYNSIQALNKD--- 159 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~---------~~~~~i~~~~~~~~l~~~--- 159 (462)
++.+|||+|||+|..+..+... ...+|+++|+|+.|++.|+..+... .++.++.. ++...
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-----D~~~~~~~ 105 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG---RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA-----DSSKELLI 105 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC-----CTTTSCST
T ss_pred CCCEEEEECCCCcHHHHHHHhc---CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe-----cccccchh
Confidence 4579999999999887777662 2468999999999999999876421 11222221 12111
Q ss_pred --cCCCCCcccEEEecccccCC-CCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 160 --ISKSEREHDLVIASYVLGEV-PSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 160 --l~~~~~~fDLVias~vL~el-~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
++...++||+|+++++|+++ .+......++.++.+. +||.|++..++.
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 106 DKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred hhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 21124589999999999998 5555555666666554 799999987653
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-09 Score=95.92 Aligned_cols=109 Identities=10% Similarity=0.096 Sum_probs=74.0
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
..+.+|||+|||+|..+..++. ...+++++|.|+.|++.++..+.... ++.++.. ++...+ ...+||
T Consensus 34 ~~~~~vLdiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-----d~~~~~--~~~~~D 102 (183)
T 2yxd_A 34 NKDDVVVDVGCGSGGMTVEIAK----RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKG-----RAEDVL--DKLEFN 102 (183)
T ss_dssp CTTCEEEEESCCCSHHHHHHHT----TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEES-----CHHHHG--GGCCCS
T ss_pred CCCCEEEEeCCCCCHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEC-----Cccccc--cCCCCc
Confidence 3457999999999999888876 35689999999999999998875432 2222222 122222 236899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
+|+++.+ .+....+..+.++ +||.|++..+. ...+.+..+.+
T Consensus 103 ~i~~~~~----~~~~~~l~~~~~~---~gG~l~~~~~~----~~~~~~~~~~l 144 (183)
T 2yxd_A 103 KAFIGGT----KNIEKIIEILDKK---KINHIVANTIV----LENAAKIINEF 144 (183)
T ss_dssp EEEECSC----SCHHHHHHHHHHT---TCCEEEEEESC----HHHHHHHHHHH
T ss_pred EEEECCc----ccHHHHHHHHhhC---CCCEEEEEecc----cccHHHHHHHH
Confidence 9999988 3344444444444 79999998864 33444445544
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.1e-10 Score=111.69 Aligned_cols=109 Identities=10% Similarity=0.103 Sum_probs=67.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC--------CCceecch----hHhhhhhcc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--------LPLIHSYN----SIQALNKDI 160 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~--------~~~i~~~~----~~~~l~~~l 160 (462)
+.+|||+|||+|..+..+... ...+|+|||+|+.|++.|++.+..... +.+..... ....+..
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~---~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~-- 123 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYG---EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE-- 123 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT--
T ss_pred CCeEEEEecCCcHhHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhc--
Confidence 579999999999644433331 245899999999999999987653211 01111100 0011211
Q ss_pred CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 161 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
+...++||+|+|.++||++.+.+....+++++.+. |||.||+..+.
T Consensus 124 ~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 124 VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 12356899999999999863332233444444443 79999987653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-09 Score=100.77 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchh
Q 012511 74 YSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNS 152 (462)
Q Consensus 74 Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~ 152 (462)
|......+.++.......++.+|||+|||+|..+..+++. ..+|+++|+|+.|++.|++.+.... ++.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~--- 95 (252)
T 1wzn_A 23 VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER----GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQG--- 95 (252)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEES---
T ss_pred hHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEC---
Confidence 3344445555555544345689999999999998888773 3589999999999999998775432 2333322
Q ss_pred HhhhhhccCCCCCcccEEEecc-cccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 153 IQALNKDISKSEREHDLVIASY-VLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 153 ~~~l~~~l~~~~~~fDLVias~-vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
++.. ++ ...+||+|++.+ +++++ +......+++++.+. +||.||+--+
T Consensus 96 --d~~~-~~-~~~~fD~v~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 96 --DVLE-IA-FKNEFDAVTMFFSTIMYF-DEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp --CGGG-CC-CCSCEEEEEECSSGGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --Chhh-cc-cCCCccEEEEcCCchhcC-CHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 2221 22 236899999874 44555 355555555555543 7999886443
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=102.25 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=75.3
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhh-ccCCCCCcccE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK-DISKSEREHDL 169 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~-~l~~~~~~fDL 169 (462)
..+.+|||+|||+|..+..+... + .+++++|+|+.|++.++..+.. ++.. ++.. ..+...++||+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~---~~~~~~D~~~~~~~~~~~~~~~-----~~~~-----d~~~~~~~~~~~~fD~ 96 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G---TRVSGIEAFPEAAEQAKEKLDH-----VVLG-----DIETMDMPYEEEQFDC 96 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T---CEEEEEESSHHHHHHHHTTSSE-----EEES-----CTTTCCCCSCTTCEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C---CeEEEEeCCHHHHHHHHHhCCc-----EEEc-----chhhcCCCCCCCccCE
Confidence 35689999999999999888874 3 5899999999999999865431 1211 1211 12334578999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
|+++++|+++++....+..+.++++ +||.+++..+...
T Consensus 97 v~~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 97 VIFGDVLEHLFDPWAVIEKVKPYIK-QNGVILASIPNVS 134 (230)
T ss_dssp EEEESCGGGSSCHHHHHHHTGGGEE-EEEEEEEEEECTT
T ss_pred EEECChhhhcCCHHHHHHHHHHHcC-CCCEEEEEeCCcc
Confidence 9999999999877654555555554 6999999887653
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-09 Score=106.98 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=73.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-----CCCceecchhHhhhhhccCCCCCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-----DLPLIHSYNSIQALNKDISKSERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-----~~~~i~~~~~~~~l~~~l~~~~~~ 166 (462)
.+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|++.+.... ++.++.. ++. .++. .++
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-----d~~-~~~~-~~~ 150 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL----GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG-----DMS-AFAL-DKR 150 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT----TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEEC-----BTT-BCCC-SCC
T ss_pred CCCcEEEEeccCCHHHHHHHHc----CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeC-----chh-cCCc-CCC
Confidence 3459999999999988888763 3579999999999999999876542 2223222 222 2333 578
Q ss_pred ccEEEec-ccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 167 HDLVIAS-YVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 167 fDLVias-~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
||+|+++ .+++++ +.+++..+++++.+. +||.|+|..+..
T Consensus 151 fD~v~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 151 FGTVVISSGSINEL-DEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp EEEEEECHHHHTTS-CHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred cCEEEECCcccccC-CHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 9999976 555655 465556666665553 799999977653
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-09 Score=100.33 Aligned_cols=100 Identities=19% Similarity=0.155 Sum_probs=73.0
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+.+|||+|||+|..+..++... .+|+++|+|+.|++.|++.+....++.++.. +....++ ..++||+|
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~-----d~~~~~~-~~~~fD~v 138 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIV----DKVVSVEINEKMYNYASKLLSYYNNIKLILG-----DGTLGYE-EEKPYDRV 138 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS----SEEEEEESCHHHHHHHHHHHTTCSSEEEEES-----CGGGCCG-GGCCEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHc----CEEEEEeCCHHHHHHHHHHHhhcCCeEEEEC-----Ccccccc-cCCCccEE
Confidence 345799999999999988888753 5899999999999999998875443322222 1222122 34689999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
++..+++++.+ .+.++++ +||.|+++.+..
T Consensus 139 ~~~~~~~~~~~------~~~~~L~-pgG~l~~~~~~~ 168 (231)
T 1vbf_A 139 VVWATAPTLLC------KPYEQLK-EGGIMILPIGVG 168 (231)
T ss_dssp EESSBBSSCCH------HHHHTEE-EEEEEEEEECSS
T ss_pred EECCcHHHHHH------HHHHHcC-CCcEEEEEEcCC
Confidence 99999999962 2444554 699999987654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.5e-10 Score=108.85 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=78.4
Q ss_pred CCCeEEEECCchhHHHHHHH-HhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALR-EVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~-~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+.+|||+|||+|..+..++ ...+ ..+|+++|+|+.|++.|++.+..... +.++.. ++. .++.. ++|
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~-~~~~~-~~f 188 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACP--GVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQ-----DAW-KLDTR-EGY 188 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCT--TCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEEC-----CGG-GCCCC-SCE
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCC--CCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-----chh-cCCcc-CCe
Confidence 45799999999999887764 2232 46899999999999999998875432 222221 222 23334 799
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
|+|+++.+++++++......+++.+.+. +||.|++.+...+
T Consensus 189 D~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 231 (305)
T 3ocj_A 189 DLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPP 231 (305)
T ss_dssp EEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred EEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 9999999999999887765555555543 7999999886554
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6e-09 Score=105.82 Aligned_cols=118 Identities=18% Similarity=0.268 Sum_probs=84.7
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhh
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALN 157 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~ 157 (462)
+..+...++...+.+|||+|||+|..+..+++.++. .+++++|. +.|++.|++.+.... ++.++.. ++.
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~-----d~~ 262 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPG--LRGTLLER-PPVAEEARELLTGRGLADRCEILPG-----DFF 262 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEEC-----CTT
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCC--CeEEEEcC-HHHHHHHHHhhhhcCcCCceEEecc-----CCC
Confidence 445555554335689999999999999999888763 58999999 999999998775432 2222221 222
Q ss_pred hccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCc
Q 012511 158 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 210 (462)
Q Consensus 158 ~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~G 210 (462)
..+ +. .||+|++.++|++++ ......+++++.+. |||.|+|+|.-.+..
T Consensus 263 ~~~--p~-~~D~v~~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~ 313 (369)
T 3gwz_A 263 ETI--PD-GADVYLIKHVLHDWD-DDDVVRILRRIATAMKPDSRLLVIDNLIDER 313 (369)
T ss_dssp TCC--CS-SCSEEEEESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSS
T ss_pred CCC--CC-CceEEEhhhhhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence 122 22 799999999999996 55555666666664 799999999766553
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-09 Score=107.43 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=75.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+|||+|..+..+.+.+|. .+++++|. +.|++.|++.+.... ++.++.. ++...+ +. .||
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~--p~-~~D 237 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHED--LSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVG-----SFFDPL--PA-GAG 237 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEEC-----CTTSCC--CC-SCS
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCC--CeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecC-----CCCCCC--CC-CCc
Confidence 3579999999999999999888863 58999999 999999998765432 1222221 222122 22 799
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCc
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 210 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~G 210 (462)
+|++.++||+++ .++...+++++.+. |||.|+|+|.-.+..
T Consensus 238 ~v~~~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~ 280 (332)
T 3i53_A 238 GYVLSAVLHDWD-DLSAVAILRRCAEAAGSGGVVLVIEAVAGDE 280 (332)
T ss_dssp EEEEESCGGGSC-HHHHHHHHHHHHHHHTTTCEEEEEECCCC--
T ss_pred EEEEehhhccCC-HHHHHHHHHHHHHhcCCCCEEEEEeecCCCC
Confidence 999999999997 44444455544442 799999999866554
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.3e-09 Score=99.27 Aligned_cols=96 Identities=14% Similarity=0.187 Sum_probs=72.0
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
+.+|||+|||+|..+..+.. . +++|+|+.|++.++.. ++.++.. ++. .++...++||+|++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~-----~---~~vD~s~~~~~~a~~~-----~~~~~~~-----d~~-~~~~~~~~fD~v~~ 108 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKI-----K---IGVEPSERMAEIARKR-----GVFVLKG-----TAE-NLPLKDESFDFALM 108 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTC-----C---EEEESCHHHHHHHHHT-----TCEEEEC-----BTT-BCCSCTTCEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHH-----H---hccCCCHHHHHHHHhc-----CCEEEEc-----ccc-cCCCCCCCeeEEEE
Confidence 57999999999988776653 1 9999999999999875 2323222 121 23444578999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
.++|+++++....+..+.++++ +||.|++.++...
T Consensus 109 ~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~ 143 (219)
T 1vlm_A 109 VTTICFVDDPERALKEAYRILK-KGGYLIVGIVDRE 143 (219)
T ss_dssp ESCGGGSSCHHHHHHHHHHHEE-EEEEEEEEEECSS
T ss_pred cchHhhccCHHHHHHHHHHHcC-CCcEEEEEEeCCc
Confidence 9999999887776666666665 6999999887543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.9e-09 Score=107.02 Aligned_cols=111 Identities=17% Similarity=0.131 Sum_probs=78.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc-cCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD-ISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~-l~~~~~~fDLV 170 (462)
.+.+|||||||+|..+.++++.+|. .+++++|. +.|++.|++.+........+... ..++... ++. .+.||+|
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~-p~~~D~v 252 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKE--VEVTIVDL-PQQLEMMRKQTAGLSGSERIHGH--GANLLDRDVPF-PTGFDAV 252 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTT--CEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEE--ECCCCSSSCCC-CCCCSEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCC--CEEEEEeC-HHHHHHHHHHHHhcCcccceEEE--EccccccCCCC-CCCcCEE
Confidence 4689999999999999999988874 48999999 99999999987654311112100 0112111 011 2689999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
+++++||+++ +++...+++++.+. |||.|+|+|.-.+.
T Consensus 253 ~~~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (363)
T 3dp7_A 253 WMSQFLDCFS-EEEVISILTRVAQSIGKDSKVYIMETLWDR 292 (363)
T ss_dssp EEESCSTTSC-HHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred EEechhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence 9999999997 55555566666553 79999999976554
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.2e-10 Score=101.63 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=80.1
Q ss_pred hcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCce
Q 012511 68 SRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLI 147 (462)
Q Consensus 68 ~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i 147 (462)
-++ +.|..++... ...++ .+.+|||+|||+|..++.++...|. .+|+++|+|+.|+++++..+...+-...+
T Consensus 31 eRL-p~ld~fY~~~---~~~l~--~~~~VLDlGCG~GplAl~l~~~~p~--a~~~A~Di~~~~leiar~~~~~~g~~~~v 102 (200)
T 3fzg_A 31 ERV-ATLNDFYTYV---FGNIK--HVSSILDFGCGFNPLALYQWNENEK--IIYHAYDIDRAEIAFLSSIIGKLKTTIKY 102 (200)
T ss_dssp TTG-GGHHHHHHHH---HHHSC--CCSEEEEETCTTHHHHHHHHCSSCC--CEEEEECSCHHHHHHHHHHHHHSCCSSEE
T ss_pred HHh-HhHHHHHHHH---HhhcC--CCCeEEEecCCCCHHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCccE
Confidence 345 5555555433 22333 3689999999999999998876653 39999999999999999988653311011
Q ss_pred ecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 148 HSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 148 ~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
.. .++... ...++||+|++..+||.|.+.+....-+.++++ +||++|-.+
T Consensus 103 ~~----~d~~~~--~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~-pggvfISfp 152 (200)
T 3fzg_A 103 RF----LNKESD--VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFH-TQNFVISFP 152 (200)
T ss_dssp EE----ECCHHH--HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCE-EEEEEEEEE
T ss_pred EE----eccccc--CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhC-CCCEEEEeC
Confidence 11 112111 245689999999999999322222233444443 688888888
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-09 Score=97.98 Aligned_cols=117 Identities=20% Similarity=0.110 Sum_probs=74.2
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhh
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALN 157 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~ 157 (462)
++..+.... ...+.+|||+|||+|..+..++.. ...+|+++|.|+.|++.|++.+.... ++.++... ...+.
T Consensus 33 l~~~l~~~~-~~~~~~vLDlgcG~G~~~~~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d--~~~~~ 106 (189)
T 3p9n_A 33 LFNIVTARR-DLTGLAVLDLYAGSGALGLEALSR---GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGA--VAAVV 106 (189)
T ss_dssp HHHHHHHHS-CCTTCEEEEETCTTCHHHHHHHHT---TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESC--HHHHH
T ss_pred HHHHHHhcc-CCCCCEEEEeCCCcCHHHHHHHHC---CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEcc--HHHHH
Confidence 344444332 235689999999999988866652 24589999999999999998875432 23333321 11111
Q ss_pred hccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHh----cCCCEEEEEecC
Q 012511 158 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD----LTRDVLVLVEPG 206 (462)
Q Consensus 158 ~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~----~~gG~LVlVEpG 206 (462)
.. ....+||+|+++..+++. ......++..+.+ ++||.|++..+.
T Consensus 107 ~~--~~~~~fD~i~~~~p~~~~--~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 107 AA--GTTSPVDLVLADPPYNVD--SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp HH--CCSSCCSEEEECCCTTSC--HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred hh--ccCCCccEEEECCCCCcc--hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 11 125789999998876664 2333445555544 279999886543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-09 Score=102.69 Aligned_cols=106 Identities=11% Similarity=0.134 Sum_probs=74.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCC-CCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISK-SEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~-~~~~f 167 (462)
++.+|||+|||+|..+..++.. + ..+|+++|+|+.|++.|+..+..... +.++.. ++.. ++. ..++|
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~-~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~-~~~~~~~~f 134 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERA-G--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ-----DSYG-RHMDLGKEF 134 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHH-T--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEES-----CTTT-SCCCCSSCE
T ss_pred CCCeEEEECCCCCHHHHHHHHC-C--CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEEC-----Cccc-cccCCCCCc
Confidence 4579999999999877766653 2 34899999999999999998765421 122211 1221 232 45789
Q ss_pred cEEEecccccCC-CCHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 168 DLVIASYVLGEV-PSLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 168 DLVias~vL~el-~~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
|+|++.++|+++ .+......+++.+.+. +||.|++..+.
T Consensus 135 D~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 135 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 999999999884 3455555566665554 79999998865
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-09 Score=100.45 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=79.5
Q ss_pred chhHHHHHHHHHHHHH-HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceec
Q 012511 71 PAVYSACYRVLCEVRR-RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS 149 (462)
Q Consensus 71 p~~Ya~~~~vL~eL~~-rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~ 149 (462)
.+.|..+...+.++.. .++ ..+.+|||+|||+|..+..+++.++ ..+|+++|+|+.|++.|++...+ +.++..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~ 137 (269)
T 1p91_A 64 AGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALP--EITTFGLDVSKVAIKAAAKRYPQ---VTFCVA 137 (269)
T ss_dssp TTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCT--TSEEEEEESCHHHHHHHHHHCTT---SEEEEC
T ss_pred CCCcHHHHHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHhCCC---cEEEEc
Confidence 3445555554444433 332 2457999999999998888888664 35899999999999999886532 222221
Q ss_pred chhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 150 YNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 150 ~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
+.. .++...++||+|++.++... +..+.++++ +||.|+++.++...
T Consensus 138 -----d~~-~~~~~~~~fD~v~~~~~~~~-------l~~~~~~L~-pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 138 -----SSH-RLPFSDTSMDAIIRIYAPCK-------AEELARVVK-PGGWVITATPGPRH 183 (269)
T ss_dssp -----CTT-SCSBCTTCEEEEEEESCCCC-------HHHHHHHEE-EEEEEEEEEECTTT
T ss_pred -----chh-hCCCCCCceeEEEEeCChhh-------HHHHHHhcC-CCcEEEEEEcCHHH
Confidence 121 23445578999999776432 234555665 69999999987643
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-08 Score=94.70 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=76.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..++...+ ..+++++|.|+.|++.|++.+.... ++.++.. +....++ ...+||+
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~~~~-~~~~~D~ 111 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMP--NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEA-----FAPEGLD-DLPDPDR 111 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCT--TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEEC-----CTTTTCT-TSCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeC-----Chhhhhh-cCCCCCE
Confidence 457999999999999988888764 3689999999999999998875322 2222221 1211122 2367999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
|++..+++ +....+..+.++++ +||.|++.... .....+.++.+
T Consensus 112 i~~~~~~~---~~~~~l~~~~~~Lk-pgG~l~~~~~~----~~~~~~~~~~l 155 (204)
T 3e05_A 112 VFIGGSGG---MLEEIIDAVDRRLK-SEGVIVLNAVT----LDTLTKAVEFL 155 (204)
T ss_dssp EEESCCTT---CHHHHHHHHHHHCC-TTCEEEEEECB----HHHHHHHHHHH
T ss_pred EEECCCCc---CHHHHHHHHHHhcC-CCeEEEEEecc----cccHHHHHHHH
Confidence 99998776 34454555555554 79999997653 23344445443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.9e-09 Score=107.00 Aligned_cols=118 Identities=13% Similarity=0.172 Sum_probs=82.1
Q ss_pred HHHHHCCCCC-CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhh
Q 012511 83 EVRRRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNK 158 (462)
Q Consensus 83 eL~~rlp~~~-p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~ 158 (462)
++...++... +.+|||+|||+|..+..+.+.+|. .+++++|. +.|++.|+..+..... +.++.. ++..
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~ 240 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQ--LTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEK-----NLLD 240 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTT--CEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEEC-----CTTC
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCC--CeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeC-----Cccc
Confidence 4544544334 689999999999999999988873 68999999 8899999987654321 222211 1211
Q ss_pred ccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 159 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 159 ~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
..+.....||+|+++++||+++ +.+...+++++.+. |||.|+|+|...+.
T Consensus 241 ~~~~~~~~~D~v~~~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (352)
T 3mcz_A 241 ARNFEGGAADVVMLNDCLHYFD-AREAREVIGHAAGLVKPGGALLILTMTMND 292 (352)
T ss_dssp GGGGTTCCEEEEEEESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred CcccCCCCccEEEEecccccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 1101345699999999999996 55555666666654 79999999975543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.3e-09 Score=99.22 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=71.9
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
..+|||+|||+|..+..++.. .+++++|+|+.|++.|++.+.... ++.++.. ++.. ++. ..+||+|+
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----d~~~-~~~-~~~fD~v~ 101 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH-----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQ-----DMRE-LEL-PEPVDAIT 101 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT-----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEEC-----CGGG-CCC-SSCEEEEE
T ss_pred CCeEEEecCCCCHHHHHHhhC-----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEc-----Chhh-cCC-CCCcCEEE
Confidence 479999999999988877652 589999999999999998875322 2333322 2221 222 36899999
Q ss_pred ecc-cccCCCCHHHHHHHHHHHHhc--CCCEEEEEe
Q 012511 172 ASY-VLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 172 as~-vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVE 204 (462)
+.+ +++++.+......+++++.+. +||.|++.-
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 102 ILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp ECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 987 999997666666666665543 799988733
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.94 E-value=4e-09 Score=95.40 Aligned_cols=103 Identities=15% Similarity=0.231 Sum_probs=70.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--C--CCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D--LPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~--~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+.+|||+|||+|..+..++.. ..+++++|+|+.|++.++..+.... + +.++.. ++...+ ..++|
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----d~~~~~--~~~~~ 120 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADE----VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS-----DLYENV--KDRKY 120 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC-----STTTTC--TTSCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHc----CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC-----chhccc--ccCCc
Confidence 5579999999999988887764 3589999999999999998875422 1 222221 222212 35689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
|+|+++..+++. ......+++.+.+. +||.++++.+..
T Consensus 121 D~v~~~~~~~~~--~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 121 NKIITNPPIRAG--KEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp EEEEECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred eEEEECCCcccc--hhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 999998887752 33333444444432 699999998765
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.94 E-value=5e-09 Score=96.03 Aligned_cols=122 Identities=12% Similarity=0.054 Sum_probs=77.2
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+.+|||+|||+|..+..++..++. ..+|+++|.|+.|++.|++.+.... ++.++.. ++........++||+
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~~~fD~ 96 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGE-NGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD-----GHQNMDKYIDCPVKA 96 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCT-TCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECS-----CGGGGGGTCCSCEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC-----CHHHHhhhccCCceE
Confidence 479999999999998888876632 3489999999999999999876532 2222221 111111123478999
Q ss_pred EEecccccC------CCCHHHHHHHHHHHHhc--CCCEEEEEec-CCCCchHHHHHHHHH
Q 012511 170 VIASYVLGE------VPSLQDRITIVRQLWDL--TRDVLVLVEP-GTPQGSSIISQMRSH 220 (462)
Q Consensus 170 Vias~vL~e------l~~~~~r~~~i~~Lw~~--~gG~LVlVEp-Gtp~Gf~~I~~aR~~ 220 (462)
|+++..+.. +........++..+.+. +||.|+++.. +.+.|........++
T Consensus 97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~ 156 (197)
T 3eey_A 97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEF 156 (197)
T ss_dssp EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHH
T ss_pred EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHH
Confidence 998876521 11233334455555443 7999999874 345555444444443
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.1e-09 Score=96.43 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=72.3
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.++.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|++.+.... ++.++.. +..... ....+||
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~~~-~~~~~~D 145 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHL----VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHG-----DGWQGW-QARAPFD 145 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-----CGGGCC-GGGCCEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh----CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEEC-----CcccCC-ccCCCcc
Confidence 35689999999999988888875 3589999999999999999876432 2222221 122212 2356899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+|+++.+++++++ .+.++++ +||.|++.-+.
T Consensus 146 ~i~~~~~~~~~~~------~~~~~L~-pgG~lv~~~~~ 176 (210)
T 3lbf_A 146 AIIVTAAPPEIPT------ALMTQLD-EGGILVLPVGE 176 (210)
T ss_dssp EEEESSBCSSCCT------HHHHTEE-EEEEEEEEECS
T ss_pred EEEEccchhhhhH------HHHHhcc-cCcEEEEEEcC
Confidence 9999999999984 2344554 69999998775
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-08 Score=102.80 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=82.0
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--C-CCceecchhHhhhh
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSIQALN 157 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~-~~~i~~~~~~~~l~ 157 (462)
...+...++...+.+|||+|||+|..+..+.+.++ ..+++++|+ +.|++.|++.+.... + +.++.. ++.
T Consensus 179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~ 250 (359)
T 1x19_A 179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP--ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAV-----DIY 250 (359)
T ss_dssp HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCT--TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEEC-----CTT
T ss_pred HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCC--CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeC-----ccc
Confidence 34444455433568999999999999999988876 358999999 999999998775422 1 222221 121
Q ss_pred hccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 158 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 158 ~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
. .+. ..+|+|+++++|++++ ++....+++++.+. +||.|+|+|...+.
T Consensus 251 ~-~~~--~~~D~v~~~~vlh~~~-d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 300 (359)
T 1x19_A 251 K-ESY--PEADAVLFCRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDMVIDD 300 (359)
T ss_dssp T-SCC--CCCSEEEEESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEEEECCCC
T ss_pred c-CCC--CCCCEEEEechhccCC-HHHHHHHHHHHHHhcCCCCEEEEEecccCC
Confidence 1 122 2349999999999997 55556666666664 79999999976543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.91 E-value=6.7e-10 Score=108.55 Aligned_cols=110 Identities=12% Similarity=0.122 Sum_probs=66.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC-CCc------e---ecc-----------
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPL------I---HSY----------- 150 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~-~~~------i---~~~----------- 150 (462)
.+.+|||+|||+|.....++. . ...+|+++|+|+.|++.|++.++.... ... + ...
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~-~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 147 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSAC-S--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 147 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGG-G--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhc-c--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence 568999999999983322222 1 135899999999999999987654211 000 0 000
Q ss_pred ------hhHhhhhhccC-----CCCCcccEEEecccccCCCC-HHHHHHHHHHHHhc--CCCEEEEEe
Q 012511 151 ------NSIQALNKDIS-----KSEREHDLVIASYVLGEVPS-LQDRITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 151 ------~~~~~l~~~l~-----~~~~~fDLVias~vL~el~~-~~~r~~~i~~Lw~~--~gG~LVlVE 204 (462)
....++...++ ...++||+|+++++|+++.. ..+...+++++.+. |||.|++++
T Consensus 148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 00001211122 12356999999999999643 23444555555553 799999974
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=103.44 Aligned_cols=105 Identities=11% Similarity=0.077 Sum_probs=73.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC-CCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~-~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+|||||||+|..+..+++.. ..++++||+|+.|++.|++....... ..++.. .++++.. +....+||.|
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~---~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~--~a~~~~~--~~~~~~FD~i 132 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAP---IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG--LWEDVAP--TLPDGHFDGI 132 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSC---EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES--CHHHHGG--GSCTTCEEEE
T ss_pred CCCeEEEECCCccHHHHHHHHhC---CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEee--hHHhhcc--cccccCCceE
Confidence 45799999999999888777643 35899999999999999998765432 112211 1222221 2346689988
Q ss_pred E-----ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 171 I-----ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 171 i-----as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+ +.+++.++++....+..+.++++ |||.|++.+
T Consensus 133 ~~D~~~~~~~~~~~~~~~~~~~e~~rvLk-PGG~l~f~~ 170 (236)
T 3orh_A 133 LYDTYPLSEETWHTHQFNFIKNHAFRLLK-PGGVLTYCN 170 (236)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEE-EEEEEEECC
T ss_pred EEeeeecccchhhhcchhhhhhhhhheeC-CCCEEEEEe
Confidence 6 46677777666666677778886 799999854
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-08 Score=98.46 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=91.4
Q ss_pred HHHHHHHHhcCchhHH--HHHH-HHHHHHHHCC-CCCCCeEEEECCchhH---HHHHHHHhCCCCccEEEEEeCCHHHHH
Q 012511 60 DETIAYVASRMPAVYS--ACYR-VLCEVRRRLP-GFSPAKVLDFGAGTGS---AFWALREVWPRSLEKVNLVEPSQSMQR 132 (462)
Q Consensus 60 ~e~~AYla~r~p~~Ya--~~~~-vL~eL~~rlp-~~~p~rVLDvG~G~G~---~~~al~~~~~~~~~~v~~VD~S~~ml~ 132 (462)
.++...+...+|..-. ...+ .|......+. .....+|||+|||+++ ....+...+|. .+|++||.|+.|++
T Consensus 42 r~~~~~~~~~~P~~~~~a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~--arVv~VD~sp~mLa 119 (277)
T 3giw_A 42 KEAGDAMSREWPALPVHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPE--SRVVYVDNDPIVLT 119 (277)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTT--CEEEEEECCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCC--CEEEEEeCChHHHH
Confidence 3555666777876432 2222 2333222222 2234799999999733 33334456763 58999999999999
Q ss_pred HHHHhhcCCC--CCCceecchhHhhhhhccCC--CCCccc-----EEEecccccCCCCHHHHHHHHHHHHhc--CCCEEE
Q 012511 133 AGQSLMQGPK--DLPLIHSYNSIQALNKDISK--SEREHD-----LVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLV 201 (462)
Q Consensus 133 ~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~--~~~~fD-----LVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LV 201 (462)
.|+.++.... +..++.... .++...+.. ....|| .|+++.+||++++.+....+++.+.+. |||+|+
T Consensus 120 ~Ar~~l~~~~~~~~~~v~aD~--~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lv 197 (277)
T 3giw_A 120 LSQGLLASTPEGRTAYVEADM--LDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLA 197 (277)
T ss_dssp TTHHHHCCCSSSEEEEEECCT--TCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEE
T ss_pred HHHHHhccCCCCcEEEEEecc--cChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEE
Confidence 9999987532 223333221 111000000 012344 588999999998654345567777654 799999
Q ss_pred EEecCCCCchHHHHHHHHH
Q 012511 202 LVEPGTPQGSSIISQMRSH 220 (462)
Q Consensus 202 lVEpGtp~Gf~~I~~aR~~ 220 (462)
|.+......-+.+..+++.
T Consensus 198 ls~~~~d~~p~~~~~~~~~ 216 (277)
T 3giw_A 198 MSIGTAEFAPQEVGRVARE 216 (277)
T ss_dssp EEEECCTTSHHHHHHHHHH
T ss_pred EEeccCCCCHHHHHHHHHH
Confidence 9886554222444444444
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=5.5e-09 Score=98.05 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=74.7
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQA 155 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~ 155 (462)
++|..+.... ++.+|||+|||+|..+..++..++ ...+|++||.|+.|++.|++.++... ++.++... ...
T Consensus 48 ~~l~~l~~~~---~~~~vLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~ 121 (221)
T 3u81_A 48 QIMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQ-PGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGA--SQD 121 (221)
T ss_dssp HHHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTSC-TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC--HHH
T ss_pred HHHHHHHHhc---CCCEEEEECCCCCHHHHHHHHhCC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECC--HHH
Confidence 3444444332 358999999999999988887665 24699999999999999999876432 12222221 111
Q ss_pred hhhccC--CCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCch
Q 012511 156 LNKDIS--KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 211 (462)
Q Consensus 156 l~~~l~--~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf 211 (462)
....++ ...++||+|++....++.....+.+..+ ++++ +||.||+-+. +..|.
T Consensus 122 ~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~Lk-pgG~lv~~~~-~~~~~ 176 (221)
T 3u81_A 122 LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLR-KGTVLLADNV-IVPGT 176 (221)
T ss_dssp HGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCC-TTCEEEESCC-CCCCC
T ss_pred HHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccC-CCeEEEEeCC-CCcch
Confidence 111111 1126899999988776653222222222 3443 7998876443 33443
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.90 E-value=6e-09 Score=103.61 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=76.9
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
..+.+|||+|||+|..+..+.+.++. .+++++|+| .|++.|++.+.... ++.++.. ++.. .+. ...|
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~-~~~-~~~~ 233 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPN--AEIFGVDWA-SVLEVAKENARIQGVASRYHTIAG-----SAFE-VDY-GNDY 233 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTT--CEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEES-----CTTT-SCC-CSCE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCC--CeEEEEecH-HHHHHHHHHHHhcCCCcceEEEec-----cccc-CCC-CCCC
Confidence 34589999999999999998888763 589999999 99999998764321 1222211 1211 122 2349
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
|+|+++++|++++ ......+++++.+. +||.|+|+|+..+.
T Consensus 234 D~v~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 276 (335)
T 2r3s_A 234 DLVLLPNFLHHFD-VATCEQLLRKIKTALAVEGKVIVFDFIPNS 276 (335)
T ss_dssp EEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEECCCCT
T ss_pred cEEEEcchhccCC-HHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Confidence 9999999999996 44445555555543 79999999987654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.90 E-value=9.3e-09 Score=93.03 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=72.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|..+..+... ..+++++|+|+.|++.++..+.+ +.++.. ++.. ++...++||+|+
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~----~~~v~~~D~~~~~~~~a~~~~~~---~~~~~~-----d~~~-~~~~~~~~D~i~ 112 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ----GHDVLGTDLDPILIDYAKQDFPE---ARWVVG-----DLSV-DQISETDFDLIV 112 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT----TCEEEEEESCHHHHHHHHHHCTT---SEEEEC-----CTTT-SCCCCCCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHC----CCcEEEEcCCHHHHHHHHHhCCC---CcEEEc-----cccc-CCCCCCceeEEE
Confidence 4579999999999998888774 35899999999999999987643 222221 1221 233456899999
Q ss_pred ec-ccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 172 AS-YVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 172 as-~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
++ .++++++ ......++..+.+. +||.+++..+..
T Consensus 113 ~~~~~~~~~~-~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 113 SAGNVMGFLA-EDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp ECCCCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred ECCcHHhhcC-hHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 98 7888885 54445555555443 699998876543
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.5e-09 Score=105.74 Aligned_cols=115 Identities=19% Similarity=0.192 Sum_probs=77.3
Q ss_pred HHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhc
Q 012511 83 EVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKD 159 (462)
Q Consensus 83 eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~ 159 (462)
.+...++...+.+|||+|||+|..+..+.+.++ ..+++++|+ +.|++.|++.+.... ++.++.. ++...
T Consensus 173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~--~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~ 244 (374)
T 1qzz_A 173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAP--HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEG-----DFFKP 244 (374)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCT--TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEEC-----CTTSC
T ss_pred HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCC--CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeC-----CCCCc
Confidence 344444333468999999999999999888775 358999999 999999998775432 2222221 22222
Q ss_pred cCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec--CCCC
Q 012511 160 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP--GTPQ 209 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp--Gtp~ 209 (462)
++ ..||+|+++++|++++ ......+++++.+. +||.|+|+|. ..+.
T Consensus 245 ~~---~~~D~v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~ 294 (374)
T 1qzz_A 245 LP---VTADVVLLSFVLLNWS-DEDALTILRGCVRALEPGGRLLVLDRADVEGD 294 (374)
T ss_dssp CS---CCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEECCH----
T ss_pred CC---CCCCEEEEeccccCCC-HHHHHHHHHHHHHhcCCCcEEEEEechhhcCC
Confidence 22 2499999999999997 44434455554442 7999999998 5443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.89 E-value=8.8e-09 Score=95.70 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=72.5
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
..+.+|||+|||+|..+..++...+ ...+|+++|.|+.|++.|++.+... .++.++.. +....++ ...+||
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~~~~-~~~~fD 148 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVG-EDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVG-----DGTLGYE-PLAPYD 148 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEES-----CGGGCCG-GGCCEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC-----CcccCCC-CCCCee
Confidence 3457999999999999988887663 1258999999999999999877532 22222221 1211121 246899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
+|+++.++++++. .+.++++ +||.|+++.+..
T Consensus 149 ~v~~~~~~~~~~~------~~~~~L~-pgG~lv~~~~~~ 180 (215)
T 2yxe_A 149 RIYTTAAGPKIPE------PLIRQLK-DGGKLLMPVGRY 180 (215)
T ss_dssp EEEESSBBSSCCH------HHHHTEE-EEEEEEEEESSS
T ss_pred EEEECCchHHHHH------HHHHHcC-CCcEEEEEECCC
Confidence 9999999999972 3445554 699999987643
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=94.02 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=70.2
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEEEec
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVIAS 173 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVias 173 (462)
+|||+|||+|..+..++.. ..+|+++|+|+.|++.|++.+.... ++.++.. ++. .++...++||+|+++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~fD~v~~~ 101 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL----GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQS-----NLA-DFDIVADAWEGIVSI 101 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT----TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECC-----BTT-TBSCCTTTCSEEEEE
T ss_pred CEEEECCCCCHhHHHHHhC----CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEc-----Chh-hcCCCcCCccEEEEE
Confidence 9999999999988887763 3589999999999999998775321 2222211 122 123345789999996
Q ss_pred ccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 174 YVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 174 ~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
+ .++ .......+++++.+. +||.|++..+..
T Consensus 102 ~--~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 102 F--CHL-PSSLRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp C--CCC-CHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred h--hcC-CHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 4 344 355566666666664 799999988754
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-09 Score=100.52 Aligned_cols=106 Identities=12% Similarity=0.140 Sum_probs=69.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+|||+|||+|..+..++.. ...+|++||+|+.|++.|++.+.... ++.++... ..++. .+..+++||+|
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d--~~~~~--~~~~~~~fD~V 132 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEA---PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGL--WEDVA--PTLPDGHFDGI 132 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTS---CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESC--HHHHG--GGSCTTCEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHhc---CCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecC--HHHhh--cccCCCceEEE
Confidence 3579999999999988887652 23489999999999999999876433 22222211 11121 13456789999
Q ss_pred Ee-cccccCCC--CHHHH---HHHHHHHHhcCCCEEEEEecC
Q 012511 171 IA-SYVLGEVP--SLQDR---ITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 171 ia-s~vL~el~--~~~~r---~~~i~~Lw~~~gG~LVlVEpG 206 (462)
++ ++.+ ... ....+ +..+.++++ |||.|++++..
T Consensus 133 ~~d~~~~-~~~~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~~ 172 (236)
T 1zx0_A 133 LYDTYPL-SEETWHTHQFNFIKNHAFRLLK-PGGVLTYCNLT 172 (236)
T ss_dssp EECCCCC-BGGGTTTHHHHHHHHTHHHHEE-EEEEEEECCHH
T ss_pred EECCccc-chhhhhhhhHHHHHHHHHHhcC-CCeEEEEEecC
Confidence 99 7765 222 12223 334455554 79999998753
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-08 Score=111.40 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=72.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-----CCCCceecchhHhhhhhccCCCCCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-----KDLPLIHSYNSIQALNKDISKSERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-----~~~~~i~~~~~~~~l~~~l~~~~~~ 166 (462)
.+.+|||||||+|..+..++...+ ...+|++||+|+.|++.|++.+... ...+.+.. ...++. .++...++
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~-p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVef--iqGDa~-dLp~~d~s 796 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPT-SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATL--YDGSIL-EFDSRLHD 796 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCC-CCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEE--EESCTT-SCCTTSCS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEE--EECchH-hCCcccCC
Confidence 468999999999999988887542 2368999999999999998855311 11221211 011222 24445678
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 167 HDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
||+|++..+|+|++ ......+++.+.+. || .|||..|.
T Consensus 797 FDlVV~~eVLeHL~-dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 797 VDIGTCLEVIEHME-EDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp CCEEEEESCGGGSC-HHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred eeEEEEeCchhhCC-hHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 99999999999997 44444444444443 56 66665553
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-08 Score=97.89 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=44.1
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHh--CCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREV--WPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~--~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+..+...++...+.+|||+|||+|..+..++.. ++ ..+|+++|+|+.|++.|+..+..
T Consensus 40 ~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~--~~~v~gvDis~~~l~~A~~~~~~ 99 (250)
T 1o9g_A 40 FQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRS--LRQVIASDVDPAPLELAAKNLAL 99 (250)
T ss_dssp HHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGG--EEEEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccC--CCeEEEEECCHHHHHHHHHHHHH
Confidence 334444443335679999999999998888875 33 35899999999999999977654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.4e-09 Score=95.61 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=72.9
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQAL 156 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l 156 (462)
.++..+...++ .+.+|||+|||+|..+..++. .+ ..+++++|.|+.|++.|++.+.... ++.++.. ++
T Consensus 49 ~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~-~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-----d~ 118 (205)
T 3grz_A 49 LAMLGIERAMV--KPLTVADVGTGSGILAIAAHK-LG--AKSVLATDISDESMTAAEENAALNGIYDIALQKT-----SL 118 (205)
T ss_dssp HHHHHHHHHCS--SCCEEEEETCTTSHHHHHHHH-TT--CSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEES-----ST
T ss_pred HHHHHHHHhcc--CCCEEEEECCCCCHHHHHHHH-CC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEec-----cc
Confidence 34444444332 357999999999998888776 33 3589999999999999998876432 2322221 12
Q ss_pred hhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 157 NKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 157 ~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
. ....++||+|+++.+++++ ..+++++.+. +||.|++.+...
T Consensus 119 ~---~~~~~~fD~i~~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~ 162 (205)
T 3grz_A 119 L---ADVDGKFDLIVANILAEIL------LDLIPQLDSHLNEDGQVIFSGIDY 162 (205)
T ss_dssp T---TTCCSCEEEEEEESCHHHH------HHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred c---ccCCCCceEEEECCcHHHH------HHHHHHHHHhcCCCCEEEEEecCc
Confidence 1 1234789999999877653 2344444432 799999976654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-08 Score=92.49 Aligned_cols=98 Identities=18% Similarity=0.096 Sum_probs=65.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|..+..++.. . +++++|+|+.|++. ..++.++.. ++.. +...++||+|+
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~----~-~v~gvD~s~~~~~~-------~~~~~~~~~-----d~~~--~~~~~~fD~i~ 83 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKR----N-TVVSTDLNIRALES-------HRGGNLVRA-----DLLC--SINQESVDVVV 83 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTT----S-EEEEEESCHHHHHT-------CSSSCEEEC-----STTT--TBCGGGCSEEE
T ss_pred CCCeEEEeccCccHHHHHHHhc----C-cEEEEECCHHHHhc-------ccCCeEEEC-----Chhh--hcccCCCCEEE
Confidence 4579999999999998888763 3 89999999999987 123333332 1222 22347899999
Q ss_pred ecccccCCCCH------HHHHHHHHHHHhc-CCCEEEEEecCCC
Q 012511 172 ASYVLGEVPSL------QDRITIVRQLWDL-TRDVLVLVEPGTP 208 (462)
Q Consensus 172 as~vL~el~~~------~~r~~~i~~Lw~~-~gG~LVlVEpGtp 208 (462)
++..+++.++. .....++.++.+. +||.+++++++..
T Consensus 84 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpgG~l~~~~~~~~ 127 (170)
T 3q87_B 84 FNPPYVPDTDDPIIGGGYLGREVIDRFVDAVTVGMLYLLVIEAN 127 (170)
T ss_dssp ECCCCBTTCCCTTTBCCGGGCHHHHHHHHHCCSSEEEEEEEGGG
T ss_pred ECCCCccCCccccccCCcchHHHHHHHHhhCCCCEEEEEEecCC
Confidence 99888875533 0112222333222 7999999987543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-08 Score=94.04 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=77.2
Q ss_pred CchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC-Ccee
Q 012511 70 MPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIH 148 (462)
Q Consensus 70 ~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~-~~i~ 148 (462)
+|..-....++|..+....+..+..+|||+|||+|..+..++..++. ..+|++||.|+.|++.|++.++..+.. ..+.
T Consensus 34 ~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~ 112 (221)
T 3dr5_A 34 LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLAD-NTTLTCIDPESEHQRQAKALFREAGYSPSRVR 112 (221)
T ss_dssp CCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCT-TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEE
Confidence 44444445556666665543222349999999999988888887752 469999999999999999988653311 1121
Q ss_pred cchhHhhhhhccCC-CCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 149 SYNSIQALNKDISK-SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 149 ~~~~~~~l~~~l~~-~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
.. ..+....++. ..++||+|++..... +.......+.++++ +||.||+
T Consensus 113 ~~--~gda~~~l~~~~~~~fD~V~~d~~~~---~~~~~l~~~~~~Lk-pGG~lv~ 161 (221)
T 3dr5_A 113 FL--LSRPLDVMSRLANDSYQLVFGQVSPM---DLKALVDAAWPLLR-RGGALVL 161 (221)
T ss_dssp EE--CSCHHHHGGGSCTTCEEEEEECCCTT---THHHHHHHHHHHEE-EEEEEEE
T ss_pred EE--EcCHHHHHHHhcCCCcCeEEEcCcHH---HHHHHHHHHHHHcC-CCcEEEE
Confidence 10 0111111221 257899999865322 23333444445554 6888887
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.85 E-value=6.3e-09 Score=97.52 Aligned_cols=105 Identities=13% Similarity=0.068 Sum_probs=62.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|..+..+++..+ ..+|++||+|+.|++.+.+..+...++..+... ........+. .++||+|+
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~--~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d--~~~~~~~~~~-~~~fD~V~ 131 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVD--EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFD--ASKPWKYSGI-VEKVDLIY 131 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTT--TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSC--TTCGGGTTTT-CCCEEEEE
T ss_pred CCCEEEEECCcCCHHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcC--CCCchhhccc-ccceeEEE
Confidence 457999999999998888888765 358999999999876555444332233222111 0001000122 36899999
Q ss_pred ecccccCCCCHHH-HHHHHHHHHhcCCCEEEEEec
Q 012511 172 ASYVLGEVPSLQD-RITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 172 as~vL~el~~~~~-r~~~i~~Lw~~~gG~LVlVEp 205 (462)
++. ..+ .... .+..+.++++ +||.|+++-+
T Consensus 132 ~~~-~~~--~~~~~~l~~~~r~Lk-pgG~l~i~~~ 162 (210)
T 1nt2_A 132 QDI-AQK--NQIEILKANAEFFLK-EKGEVVIMVK 162 (210)
T ss_dssp ECC-CST--THHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred Eec-cCh--hHHHHHHHHHHHHhC-CCCEEEEEEe
Confidence 872 221 1111 1344455554 7999999853
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.2e-09 Score=93.53 Aligned_cols=102 Identities=14% Similarity=0.193 Sum_probs=69.4
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.++.+|||+|||+|..+..++... .+|+++|.|+.|++.+++.+.... ++.++.. ++...++ ...+|
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~~~~~-~~~~~ 101 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV----RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG-----DAPEALC-KIPDI 101 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS----SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES-----CHHHHHT-TSCCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc----CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEec-----CHHHhcc-cCCCC
Confidence 356799999999999888887643 689999999999999998775432 2222221 1221122 12489
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
|+|+++.+++++ ...+..+.++++ +||.+++..+.
T Consensus 102 D~v~~~~~~~~~---~~~l~~~~~~l~-~gG~l~~~~~~ 136 (192)
T 1l3i_A 102 DIAVVGGSGGEL---QEILRIIKDKLK-PGGRIIVTAIL 136 (192)
T ss_dssp EEEEESCCTTCH---HHHHHHHHHTEE-EEEEEEEEECB
T ss_pred CEEEECCchHHH---HHHHHHHHHhcC-CCcEEEEEecC
Confidence 999999877543 343444444444 69999998764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-08 Score=98.94 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=66.8
Q ss_pred CCCCeEEEECCchhHHH-HHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAF-WALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~-~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
..+.+|||+|||+|..+ ..++. ++ ..+|++||+|++|++.|+++++..+ ++.++.. +.. .++ ..+|
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~-~~--ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~g-----Da~-~l~--d~~F 189 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSH-VY--GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITG-----DET-VID--GLEF 189 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHH-TT--CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEES-----CGG-GGG--GCCC
T ss_pred CCcCEEEEECCCccHHHHHHHHH-cc--CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEC-----chh-hCC--CCCc
Confidence 35689999999998433 33444 32 3589999999999999999876422 2333322 121 132 5789
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|+|+++.+ .++.....+.+.++++ |||.||+.+
T Consensus 190 DvV~~~a~---~~d~~~~l~el~r~Lk-PGG~Lvv~~ 222 (298)
T 3fpf_A 190 DVLMVAAL---AEPKRRVFRNIHRYVD-TETRIIYRT 222 (298)
T ss_dssp SEEEECTT---CSCHHHHHHHHHHHCC-TTCEEEEEE
T ss_pred CEEEECCC---ccCHHHHHHHHHHHcC-CCcEEEEEc
Confidence 99998654 4555565555666654 799999876
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.85 E-value=8.9e-09 Score=91.56 Aligned_cols=107 Identities=13% Similarity=0.076 Sum_probs=67.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+|||+|||+|..+..++... ..++++|.|+.|++.|+..+.... ++.++... ........+....+||+|
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~D~i 114 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG----WEAVLVEKDPEAVRLLKENVRRTGLGARVVALP--VEVFLPEAKAQGERFTVA 114 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT----CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSC--HHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC----CeEEEEeCCHHHHHHHHHHHHHcCCceEEEecc--HHHHHHhhhccCCceEEE
Confidence 35799999999999888887742 249999999999999998775322 33333221 111111111123479999
Q ss_pred EecccccCCCCHHHHHHHHH--HHHhcCCCEEEEEecCC
Q 012511 171 IASYVLGEVPSLQDRITIVR--QLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~--~Lw~~~gG~LVlVEpGt 207 (462)
+++..++ ....+....+. ++++ +||.+++..+..
T Consensus 115 ~~~~~~~--~~~~~~~~~~~~~~~L~-~gG~~~~~~~~~ 150 (171)
T 1ws6_A 115 FMAPPYA--MDLAALFGELLASGLVE-AGGLYVLQHPKD 150 (171)
T ss_dssp EECCCTT--SCTTHHHHHHHHHTCEE-EEEEEEEEEETT
T ss_pred EECCCCc--hhHHHHHHHHHhhcccC-CCcEEEEEeCCc
Confidence 9997765 33344444444 3343 689888766543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.85 E-value=5e-09 Score=96.51 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=42.4
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccC---CCCCc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDIS---KSERE 166 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~---~~~~~ 166 (462)
..+.+|||+|||+|..+..++..++ ..+++++|+|+.|++.|+..+.... ++.++. .++...++ ...++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-----~d~~~~~~~~~~~~~~ 101 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACP--GVSVTAVDLSMDALAVARRNAERFGAVVDWAA-----ADGIEWLIERAERGRP 101 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCT--TEEEEEEECC-------------------CCH-----HHHHHHHHHHHHTTCC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHHhCCceEEEE-----cchHhhhhhhhhccCc
Confidence 3568999999999999998888764 3589999999999999998776432 222221 12222111 12378
Q ss_pred ccEEEecccc
Q 012511 167 HDLVIASYVL 176 (462)
Q Consensus 167 fDLVias~vL 176 (462)
||+|+++..+
T Consensus 102 fD~i~~npp~ 111 (215)
T 4dzr_A 102 WHAIVSNPPY 111 (215)
T ss_dssp BSEEEECCCC
T ss_pred ccEEEECCCC
Confidence 9999996443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.2e-09 Score=99.39 Aligned_cols=106 Identities=9% Similarity=0.065 Sum_probs=71.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|+.+..+++..+ ...+|++||.|+.|++.+++.++...++..+.... ... ...+.....+|+|+
T Consensus 77 pG~~VldlG~G~G~~~~~la~~VG-~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~--~~p-~~~~~~~~~vDvVf 152 (233)
T 4df3_A 77 EGDRILYLGIASGTTASHMSDIIG-PRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDA--RFP-EKYRHLVEGVDGLY 152 (233)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC-TTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCT--TCG-GGGTTTCCCEEEEE
T ss_pred CCCEEEEecCcCCHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEec--cCc-cccccccceEEEEE
Confidence 458999999999999999998776 35799999999999999999887766654333211 111 11233456899988
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+....+ .+....+..+.++++ |||.++|+.
T Consensus 153 ~d~~~~--~~~~~~l~~~~r~LK-pGG~lvI~i 182 (233)
T 4df3_A 153 ADVAQP--EQAAIVVRNARFFLR-DGGYMLMAI 182 (233)
T ss_dssp ECCCCT--THHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred EeccCC--hhHHHHHHHHHHhcc-CCCEEEEEE
Confidence 653322 222333334444554 799998864
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=7.9e-09 Score=101.07 Aligned_cols=109 Identities=17% Similarity=0.090 Sum_probs=70.3
Q ss_pred CCCeEEEECCchhH----HHHHHHHhCCCC--ccEEEEEeCCHHHHHHHHHhhcC---CCCCC-----------------
Q 012511 92 SPAKVLDFGAGTGS----AFWALREVWPRS--LEKVNLVEPSQSMQRAGQSLMQG---PKDLP----------------- 145 (462)
Q Consensus 92 ~p~rVLDvG~G~G~----~~~al~~~~~~~--~~~v~~VD~S~~ml~~Ak~ll~~---~~~~~----------------- 145 (462)
.+.+|||+|||+|. .+..+++.++.. ..+|+|+|+|+.|++.|++.+-. ..++|
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999997 344455554421 24899999999999999986411 00010
Q ss_pred -c-ee------cchhHhhhhhccCCC-CCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 146 -L-IH------SYNSIQALNKDISKS-EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 146 -~-i~------~~~~~~~l~~~l~~~-~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
+ +. ..+...++.. .+.. .++||+|+|.++|+++. ++.+..++.++.+. |||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~-~~~~~~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLE-KQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTC-SSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCC-CCCCcCCCeeEEEECCchHhCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 0 00 0000112221 1122 46899999999999995 66667777777765 7999886
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=9.8e-09 Score=110.35 Aligned_cols=95 Identities=20% Similarity=0.207 Sum_probs=67.2
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQAL 156 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l 156 (462)
..+..+.+.++ +|.+|||||||+|..+..++. ...+|+|||.|+.|++.|+..+...+ ++.+... +..++
T Consensus 55 ~~~~~~~~~~~--~~~~vLDvGCG~G~~~~~la~----~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~--~~~~~ 126 (569)
T 4azs_A 55 EQYDNLSRALG--RPLNVLDLGCAQGFFSLSLAS----KGATIVGIDFQQENINVCRALAEENPDFAAEFRVG--RIEEV 126 (569)
T ss_dssp HHHHHHHHHHT--SCCEEEEETCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEEC--CHHHH
T ss_pred HHHHHHHhhcC--CCCeEEEECCCCcHHHHHHHh----CCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEEC--CHHHH
Confidence 33344444433 578999999999999988887 35689999999999999998876543 2233221 12333
Q ss_pred hhccCCCCCcccEEEecccccCCCCHH
Q 012511 157 NKDISKSEREHDLVIASYVLGEVPSLQ 183 (462)
Q Consensus 157 ~~~l~~~~~~fDLVias~vL~el~~~~ 183 (462)
.. ....++||+|+|.-+|+|++++.
T Consensus 127 ~~--~~~~~~fD~v~~~e~~ehv~~~~ 151 (569)
T 4azs_A 127 IA--ALEEGEFDLAIGLSVFHHIVHLH 151 (569)
T ss_dssp HH--HCCTTSCSEEEEESCHHHHHHHH
T ss_pred hh--hccCCCccEEEECcchhcCCCHH
Confidence 22 12457899999999999998654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-08 Score=96.54 Aligned_cols=101 Identities=12% Similarity=0.099 Sum_probs=66.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+|||+|..+..+++.++ ..+|++||.|+.|++.++..++...++.++.... ......++.. .+||+|+
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~--~~~~~~~~~~-~~~D~v~ 148 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIAD--KGIVYAIEYAPRIMRELLDACAERENIIPILGDA--NKPQEYANIV-EKVDVIY 148 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTT--TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT--TCGGGGTTTS-CCEEEEE
T ss_pred CCCEEEEEcccCCHHHHHHHHHcC--CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCC--CCcccccccC-ccEEEEE
Confidence 457999999999999998888765 3589999999999999998876543333322110 0000002223 6899999
Q ss_pred ecccccCCCCHHHH---HHHHHHHHhcCCCEEEEE
Q 012511 172 ASYVLGEVPSLQDR---ITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 172 as~vL~el~~~~~r---~~~i~~Lw~~~gG~LVlV 203 (462)
++++++... +..+.++++ +||.|+++
T Consensus 149 -----~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~ 177 (230)
T 1fbn_A 149 -----EDVAQPNQAEILIKNAKWFLK-KGGYGMIA 177 (230)
T ss_dssp -----ECCCSTTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred -----EecCChhHHHHHHHHHHHhCC-CCcEEEEE
Confidence 445555333 334444444 69999885
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=101.91 Aligned_cols=116 Identities=14% Similarity=0.284 Sum_probs=80.1
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC---CCCCceecchhHhhhh
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---KDLPLIHSYNSIQALN 157 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~---~~~~~i~~~~~~~~l~ 157 (462)
...+...++ +.+.+|||+|||+|..+..+.+.++. .+++++|. +.|++.|++.+... .++.++.. ++.
T Consensus 157 ~~~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~ 227 (334)
T 2ip2_A 157 FHEIPRLLD-FRGRSFVDVGGGSGELTKAILQAEPS--ARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGG-----DML 227 (334)
T ss_dssp HHHHHHHSC-CTTCEEEEETCTTCHHHHHHHHHCTT--CEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEES-----CTT
T ss_pred HHHHHHhCC-CCCCEEEEeCCCchHHHHHHHHHCCC--CEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecC-----CCC
Confidence 344444443 33389999999999999998888763 48999999 99999998876431 12222221 222
Q ss_pred hccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 158 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 158 ~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
..+ ...||+|++.++||+++ ......+++++.+. +||.|+|+|...+.
T Consensus 228 ~~~---~~~~D~v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 277 (334)
T 2ip2_A 228 QEV---PSNGDIYLLSRIIGDLD-EAASLRLLGNCREAMAGDGRVVVIERTISA 277 (334)
T ss_dssp TCC---CSSCSEEEEESCGGGCC-HHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred CCC---CCCCCEEEEchhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 212 25799999999999996 44444555555443 79999999976543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-08 Score=101.74 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=80.0
Q ss_pred HHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhcc
Q 012511 84 VRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 84 L~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l 160 (462)
+...++..++.+|||+|||+|..+..+.+.++. .+++++|+ +.|++.|++.+.... ++.++.. ++...+
T Consensus 175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~ 246 (360)
T 1tw3_A 175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPH--VSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEG-----DFFEPL 246 (360)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEEC-----CTTSCC
T ss_pred HHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCC--CEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeC-----CCCCCC
Confidence 344444334679999999999999988887753 58999999 999999998775432 2222221 222222
Q ss_pred CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecC-CCC
Q 012511 161 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG-TPQ 209 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpG-tp~ 209 (462)
+ ..||+|+++++|++++ ......+++++.+. +||.|+|+|+. .+.
T Consensus 247 ~---~~~D~v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~ 294 (360)
T 1tw3_A 247 P---RKADAIILSFVLLNWP-DHDAVRILTRCAEALEPGGRILIHERDDLHE 294 (360)
T ss_dssp S---SCEEEEEEESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEEECCBCGG
T ss_pred C---CCccEEEEcccccCCC-HHHHHHHHHHHHHhcCCCcEEEEEEEeccCC
Confidence 2 3499999999999997 55445566666554 79999999987 543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.1e-09 Score=91.25 Aligned_cols=115 Identities=11% Similarity=0.077 Sum_probs=71.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchh-Hh---hhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNS-IQ---ALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~-~~---~l~~~l~~~~~~f 167 (462)
.+.+|||+|||+|..+..++..++ ...+++++|.|+ |++. .++.++..... .. .+... ...++|
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~-~~~~v~~~D~~~-~~~~--------~~~~~~~~d~~~~~~~~~~~~~--~~~~~~ 89 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIG-GKGRIIACDLLP-MDPI--------VGVDFLQGDFRDELVMKALLER--VGDSKV 89 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC-TTCEEEEEESSC-CCCC--------TTEEEEESCTTSHHHHHHHHHH--HTTCCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhC-CCCeEEEEECcc-cccc--------CcEEEEEcccccchhhhhhhcc--CCCCce
Confidence 457999999999999988888753 236899999999 7543 12222211100 00 01100 234689
Q ss_pred cEEEecccccCCCCH-----------HHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHH
Q 012511 168 DLVIASYVLGEVPSL-----------QDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRS 219 (462)
Q Consensus 168 DLVias~vL~el~~~-----------~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~ 219 (462)
|+|+++.+++..... ...+..+.++++ +||.+++..+..+.....+..+++
T Consensus 90 D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~~~~~~~~~~~~ 151 (180)
T 1ej0_A 90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA-PGGSFVVKVFQGEGFDEYLREIRS 151 (180)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEESSTTHHHHHHHHHH
T ss_pred eEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcC-CCcEEEEEEecCCcHHHHHHHHHH
Confidence 999999998887654 222333334443 799999988876655444433333
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.7e-08 Score=91.60 Aligned_cols=111 Identities=10% Similarity=-0.026 Sum_probs=73.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|++.++... ++.++.. +....++ ....||
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~----~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~-----d~~~~~~-~~~~~D 124 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLA----GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG-----TAPAALA-DLPLPE 124 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-----CTTGGGT-TSCCCS
T ss_pred CCCEEEEecCCCCHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeC-----chhhhcc-cCCCCC
Confidence 4579999999999998888774 4589999999999999998875432 2222222 1221122 234799
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
+|++...+ +.. .+..+.++++ +||.|++.... .+.+.+..+.+-
T Consensus 125 ~v~~~~~~----~~~-~l~~~~~~Lk-pgG~lv~~~~~----~~~~~~~~~~l~ 168 (204)
T 3njr_A 125 AVFIGGGG----SQA-LYDRLWEWLA-PGTRIVANAVT----LESETLLTQLHA 168 (204)
T ss_dssp EEEECSCC----CHH-HHHHHHHHSC-TTCEEEEEECS----HHHHHHHHHHHH
T ss_pred EEEECCcc----cHH-HHHHHHHhcC-CCcEEEEEecC----cccHHHHHHHHH
Confidence 99988754 233 4445555554 79999987653 344555555543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.6e-09 Score=97.17 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=74.1
Q ss_pred CCCeEEEECCc-hhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAG-TGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G-~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+||| +|..+..++... ..+|+++|+|+.|++.|++.+.... ++.++.. +.....+...++||+
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~-----d~~~~~~~~~~~fD~ 126 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF---NCKVTATEVDEEFFEYARRNIERNNSNVRLVKS-----NGGIIKGVVEGTFDV 126 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH---CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEEC-----SSCSSTTTCCSCEEE
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeC-----CchhhhhcccCceeE
Confidence 45799999999 999988887754 3589999999999999998876433 2333322 111111223478999
Q ss_pred EEecccccCCCCH----------------HHHHHHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 170 VIASYVLGEVPSL----------------QDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 170 Vias~vL~el~~~----------------~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
|+++..++..... .....+++.+.+. +||.|+++-+. +.....+.++.+
T Consensus 127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~~l 193 (230)
T 3evz_A 127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD---KEKLLNVIKERG 193 (230)
T ss_dssp EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES---CHHHHHHHHHHH
T ss_pred EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc---cHhHHHHHHHHH
Confidence 9998665554321 0113345554443 79999997543 334455555554
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=8e-09 Score=105.94 Aligned_cols=121 Identities=9% Similarity=0.104 Sum_probs=77.4
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC---------C--CCCCcee
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG---------P--KDLPLIH 148 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~---------~--~~~~~i~ 148 (462)
.+.++...+......+|||+|||+|..+..++...+ ..+++|||+|+.|+++|+..++. . .++.++.
T Consensus 161 ~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g--~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~ 238 (438)
T 3uwp_A 161 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN--CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 238 (438)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC--CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 344444444434557999999999999988876654 34799999999999999875421 1 2233333
Q ss_pred cchhHhhhhhccCCC--CCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCchH
Q 012511 149 SYNSIQALNKDISKS--EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 149 ~~~~~~~l~~~l~~~--~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~ 212 (462)
.. +.. ++.. ...||+|+++++++. ++.. ..+..+++. |||.||+.|+-.|.++.
T Consensus 239 GD-----~~~-lp~~d~~~~aDVVf~Nn~~F~-pdl~---~aL~Ei~RvLKPGGrIVssE~f~p~d~~ 296 (438)
T 3uwp_A 239 GD-----FLS-EEWRERIANTSVIFVNNFAFG-PEVD---HQLKERFANMKEGGRIVSSKPFAPLNFR 296 (438)
T ss_dssp CC-----TTS-HHHHHHHHTCSEEEECCTTCC-HHHH---HHHHHHHTTSCTTCEEEESSCSSCTTCC
T ss_pred Cc-----ccC-CccccccCCccEEEEcccccC-chHH---HHHHHHHHcCCCCcEEEEeecccCCCCC
Confidence 22 111 1111 136999999877642 2222 233344442 89999999998888774
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-08 Score=98.77 Aligned_cols=111 Identities=12% Similarity=0.110 Sum_probs=72.4
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeC-CHHHHHHHHHhh-----cCCC-------CCCceecchhHhhhh
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEP-SQSMQRAGQSLM-----QGPK-------DLPLIHSYNSIQALN 157 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~-S~~ml~~Ak~ll-----~~~~-------~~~~i~~~~~~~~l~ 157 (462)
..+.+|||+|||+|..+.+++.. + ..+|+++|. |+.|++.|+..+ +... ++.++.. .+.+..
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~-~--~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~--~~~~~~ 152 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLA-G--ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPY--RWGDSP 152 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHT-T--CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEEC--CTTSCT
T ss_pred cCCCeEEEecccccHHHHHHHHc-C--CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEe--cCCCcc
Confidence 35679999999999988877763 2 348999999 899999999887 2211 1211110 011100
Q ss_pred hccCC--CCCcccEEEecccccCCCCHHHHHHHHHHHHhc--C--CCEEEEE-ecC
Q 012511 158 KDISK--SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--T--RDVLVLV-EPG 206 (462)
Q Consensus 158 ~~l~~--~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~--gG~LVlV-EpG 206 (462)
..+.. ...+||+||++.++++.+.....+..+.++++. + ||.++++ .+.
T Consensus 153 ~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~ 208 (281)
T 3bzb_A 153 DSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHH 208 (281)
T ss_dssp HHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-
T ss_pred HHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEee
Confidence 01100 246899999999999987667777777787761 4 8887664 443
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.79 E-value=3.2e-08 Score=91.03 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhH
Q 012511 74 YSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSI 153 (462)
Q Consensus 74 Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~ 153 (462)
......++..+... +...+.+|||+|||+|..+.+++.. + ..+|+++|+|+.|++.|+..+. ++.++..
T Consensus 34 ~~~~~~l~~~~~~~-~~~~~~~vlD~gcG~G~~~~~l~~~-~--~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~---- 102 (200)
T 1ne2_A 34 ASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACGSYLL-G--AESVTAFDIDPDAIETAKRNCG---GVNFMVA---- 102 (200)
T ss_dssp HHHHHHHHHHHHHH-TSSBTSEEEEETCTTCHHHHHHHHT-T--BSEEEEEESCHHHHHHHHHHCT---TSEEEEC----
T ss_pred HHHHHHHHHHHHhc-CCCCCCEEEEEeCCccHHHHHHHHc-C--CCEEEEEECCHHHHHHHHHhcC---CCEEEEC----
Confidence 33333444444333 3335679999999999998888764 2 3579999999999999998775 2333322
Q ss_pred hhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 154 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 154 ~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
+... ++ .+||+|+++..++++.. .....+++.+.+..|+.+++..+
T Consensus 103 -d~~~-~~---~~~D~v~~~~p~~~~~~-~~~~~~l~~~~~~~g~~~~~~~~ 148 (200)
T 1ne2_A 103 -DVSE-IS---GKYDTWIMNPPFGSVVK-HSDRAFIDKAFETSMWIYSIGNA 148 (200)
T ss_dssp -CGGG-CC---CCEEEEEECCCC--------CHHHHHHHHHHEEEEEEEEEG
T ss_pred -cHHH-CC---CCeeEEEECCCchhccC-chhHHHHHHHHHhcCcEEEEEcC
Confidence 1221 22 58999999999988863 22235666676655444444433
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.7e-08 Score=98.86 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=71.4
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.++.+|||+|||+|..+..+++..+ ...+|+++|+|+.|++.|++.+...+ ++.++.. +..... ...++||
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~-----d~~~~~-~~~~~fD 146 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVG-EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG-----DGYYGV-PEFSPYD 146 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-----CGGGCC-GGGCCEE
T ss_pred CCcCEEEEecCCchHHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEEC-----Chhhcc-ccCCCeE
Confidence 3457999999999998888877644 23579999999999999998875432 2222221 222212 2346899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
+|++..++++++ ..+.++++ +||.|++...
T Consensus 147 ~Iv~~~~~~~~~------~~~~~~Lk-pgG~lvi~~~ 176 (317)
T 1dl5_A 147 VIFVTVGVDEVP------ETWFTQLK-EGGRVIVPIN 176 (317)
T ss_dssp EEEECSBBSCCC------HHHHHHEE-EEEEEEEEBC
T ss_pred EEEEcCCHHHHH------HHHHHhcC-CCcEEEEEEC
Confidence 999999999997 23445555 6999998753
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.78 E-value=7.6e-09 Score=107.32 Aligned_cols=122 Identities=9% Similarity=0.017 Sum_probs=76.8
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHH-------HHhhcCC----CCCCcee
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAG-------QSLMQGP----KDLPLIH 148 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~A-------k~ll~~~----~~~~~i~ 148 (462)
++..+...+....+.+|||+|||+|..+..++...+ ..+|++||.|+.|++.| +..+... .++.++.
T Consensus 230 ~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g--~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~ 307 (433)
T 1u2z_A 230 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG--CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 307 (433)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC--CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence 344444455444568999999999999888887654 34899999999999988 6655432 2222222
Q ss_pred cchhHhhhhh--ccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCch
Q 012511 149 SYNSIQALNK--DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 149 ~~~~~~~l~~--~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf 211 (462)
.. ++.. .++....+||+|++++++. .+ +....+..+.+. +||.||+.++-.|..|
T Consensus 308 gD----~~~~~~~~~~~~~~FDvIvvn~~l~-~~---d~~~~L~el~r~LKpGG~lVi~d~f~p~~~ 366 (433)
T 1u2z_A 308 KK----SFVDNNRVAELIPQCDVILVNNFLF-DE---DLNKKVEKILQTAKVGCKIISLKSLRSLTY 366 (433)
T ss_dssp SS----CSTTCHHHHHHGGGCSEEEECCTTC-CH---HHHHHHHHHHTTCCTTCEEEESSCSSCTTC
T ss_pred cC----ccccccccccccCCCCEEEEeCccc-cc---cHHHHHHHHHHhCCCCeEEEEeeccCCccc
Confidence 11 0100 0101135799999987773 22 223344555543 7999999887666554
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.78 E-value=4.3e-08 Score=91.35 Aligned_cols=104 Identities=8% Similarity=0.052 Sum_probs=70.0
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccC--CCCCccc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDIS--KSEREHD 168 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~--~~~~~fD 168 (462)
+.+|||+|||+|..+..++...+ ..++++||+|+.|++.|++.+... .++.++... ... ++ ...++||
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p--~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~~~D 113 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNP--DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVD-----GSD-LTDYFEDGEID 113 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECC-----SSC-GGGTSCTTCCS
T ss_pred CCeEEEEccCcCHHHHHHHHHCC--CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCC-----HHH-HHhhcCCCCCC
Confidence 47999999999999998888775 358999999999999999877532 233333221 111 22 2356899
Q ss_pred EEEecccccCCCC--------HHHHHHHHHHHHhcCCCEEEEEec
Q 012511 169 LVIASYVLGEVPS--------LQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 169 LVias~vL~el~~--------~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
+|++++...+... ....+..+.++++ +||.|++...
T Consensus 114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~ 157 (214)
T 1yzh_A 114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILP-ENGEIHFKTD 157 (214)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSC-TTCEEEEEES
T ss_pred EEEEECCCCccccchhhhccCCHHHHHHHHHHcC-CCcEEEEEeC
Confidence 9999876543321 1233444555554 7999988643
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-08 Score=100.15 Aligned_cols=113 Identities=12% Similarity=0.229 Sum_probs=73.3
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhh
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNK 158 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~ 158 (462)
..+...++-..+.+|||+|||+|..+..+++.++. .+++++|.+ .++. +..+.... ++.++.. ++..
T Consensus 174 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~-----d~~~ 243 (348)
T 3lst_A 174 LILARAGDFPATGTVADVGGGRGGFLLTVLREHPG--LQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEG-----DFLR 243 (348)
T ss_dssp HHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTT--EEEEEEECH-HHHT--TCCCCCGGGTTSEEEEEC-----CTTT
T ss_pred HHHHHhCCccCCceEEEECCccCHHHHHHHHHCCC--CEEEEecCH-HHhh--cccccccCCCCCeEEEec-----CCCC
Confidence 34555554334579999999999999999988863 589999994 4444 22222111 1111111 2211
Q ss_pred ccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 159 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 159 ~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
.+ . +||+|+++++||+++ +.+...+++++.+. |||.|+|+|.-.+.
T Consensus 244 ~~---p-~~D~v~~~~vlh~~~-d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 291 (348)
T 3lst_A 244 EV---P-HADVHVLKRILHNWG-DEDSVRILTNCRRVMPAHGRVLVIDAVVPE 291 (348)
T ss_dssp CC---C-CCSEEEEESCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred CC---C-CCcEEEEehhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 12 2 899999999999997 55445566665553 79999999975443
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.77 E-value=7.7e-09 Score=93.09 Aligned_cols=107 Identities=21% Similarity=0.200 Sum_probs=67.0
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
..+.+|||+|||+|..+..++.. + ..+|+++|+|+.|++.|+..++... ++.++.. +....++....+|
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~f 101 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-G--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKM-----EAERAIDCLTGRF 101 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-T--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECS-----CHHHHHHHBCSCE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-C--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC-----cHHHhHHhhcCCC
Confidence 35679999999999998877764 2 3589999999999999999886543 1222221 1111112223579
Q ss_pred cEEEecccccCCCCHHHHHHHHH--HHHhcCCCEEEEEecCC
Q 012511 168 DLVIASYVLGEVPSLQDRITIVR--QLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~--~Lw~~~gG~LVlVEpGt 207 (462)
|+|+++..++.. ...+.+..+. ++++ +||.+++..+..
T Consensus 102 D~i~~~~~~~~~-~~~~~~~~l~~~~~L~-~gG~l~~~~~~~ 141 (177)
T 2esr_A 102 DLVFLDPPYAKE-TIVATIEALAAKNLLS-EQVMVVCETDKT 141 (177)
T ss_dssp EEEEECCSSHHH-HHHHHHHHHHHTTCEE-EEEEEEEEEETT
T ss_pred CEEEECCCCCcc-hHHHHHHHHHhCCCcC-CCcEEEEEECCc
Confidence 999998654321 1222223332 2222 689988876543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=96.22 Aligned_cols=91 Identities=10% Similarity=0.107 Sum_probs=63.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCC-CCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKS-EREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~-~~~fDLV 170 (462)
.+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.++... .++.++.. ++...++.. .++||+|
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~-----d~~~~~~~~~~~~fD~v 115 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ----AARWAAYDFSPELLKLARANA---PHADVYEW-----NGKGELPAGLGAPFGLI 115 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHHC---TTSEEEEC-----CSCSSCCTTCCCCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHhC---CCceEEEc-----chhhccCCcCCCCEEEE
Confidence 3579999999999999888874 358999999999999999873 23333322 222234444 6789999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEE
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLV 201 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LV 201 (462)
+++. +....+..+.++++ |||.|+
T Consensus 116 ~~~~------~~~~~l~~~~~~Lk-pgG~l~ 139 (226)
T 3m33_A 116 VSRR------GPTSVILRLPELAA-PDAHFL 139 (226)
T ss_dssp EEES------CCSGGGGGHHHHEE-EEEEEE
T ss_pred EeCC------CHHHHHHHHHHHcC-CCcEEE
Confidence 9882 23333344555665 699998
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-08 Score=92.16 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=65.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
+.+|||+|||+|..+..++.. ...+|++||.|+.|++.|++.++... ++.++.. +....++....+||+|
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~---~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-----D~~~~~~~~~~~fD~V 126 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSR---YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNS-----NAMSFLAQKGTPHNIV 126 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECS-----CHHHHHSSCCCCEEEE
T ss_pred CCeEEEeCCCcCHHHHHHHhc---CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEC-----CHHHHHhhcCCCCCEE
Confidence 479999999999988865543 23489999999999999998875432 2222222 2222223345689999
Q ss_pred EecccccCCCCHHHHHHHHHH--HHhcCCCEEEEEe
Q 012511 171 IASYVLGEVPSLQDRITIVRQ--LWDLTRDVLVLVE 204 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~--Lw~~~gG~LVlVE 204 (462)
++...++ .......+..+.+ +++ +||.|++..
T Consensus 127 ~~~~p~~-~~~~~~~l~~l~~~~~L~-pgG~l~i~~ 160 (202)
T 2fpo_A 127 FVDPPFR-RGLLEETINLLEDNGWLA-DEALIYVES 160 (202)
T ss_dssp EECCSSS-TTTHHHHHHHHHHTTCEE-EEEEEEEEE
T ss_pred EECCCCC-CCcHHHHHHHHHhcCccC-CCcEEEEEE
Confidence 9986644 3334443333333 133 689888754
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.75 E-value=6.4e-08 Score=90.56 Aligned_cols=106 Identities=9% Similarity=0.043 Sum_probs=70.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+|||+|||+|..+..++...+ ...+++||+|+.|++.|++.+... .++.++... ...+... ...++||.|
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p--~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d--~~~l~~~--~~~~~~d~v 112 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNP--DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNID--ADTLTDV--FEPGEVKRV 112 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCT--TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCC--GGGHHHH--CCTTSCCEE
T ss_pred CceEEEEecCCCHHHHHHHHHCC--CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCC--HHHHHhh--cCcCCcCEE
Confidence 46999999999999998888775 358999999999999999877532 233333322 1112111 235679999
Q ss_pred EecccccCCCC--------HHHHHHHHHHHHhcCCCEEEEEec
Q 012511 171 IASYVLGEVPS--------LQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 171 ias~vL~el~~--------~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
++.+...+... ....+..+.++++ +||.|++...
T Consensus 113 ~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lk-pgG~l~~~td 154 (213)
T 2fca_A 113 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMG-KGGSIHFKTD 154 (213)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHT-TSCEEEEEES
T ss_pred EEECCCCCcCccccccccCcHHHHHHHHHHcC-CCCEEEEEeC
Confidence 87665433221 1233455566665 7999998653
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.9e-08 Score=100.60 Aligned_cols=111 Identities=19% Similarity=0.149 Sum_probs=73.4
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
..+.+|||+|||+|..+..++.. ..+|++||.|+.|++.|++.+.... .+.++.. +... .....++||+
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~----g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~-----D~~~-~~~~~~~fD~ 301 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM----GAEVVGVEDDLASVLSLQKGLEANALKAQALHS-----DVDE-ALTEEARFDI 301 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT----TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEEC-----STTT-TSCTTCCEEE
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEc-----chhh-ccccCCCeEE
Confidence 34579999999999988887773 3589999999999999999876432 2222221 2221 1223478999
Q ss_pred EEecccccCCCC--HHHHHHHHHHHHhc--CCCEEEEEecCCCCchH
Q 012511 170 VIASYVLGEVPS--LQDRITIVRQLWDL--TRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 170 Vias~vL~el~~--~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~ 212 (462)
|+++..+++... ......++..+.+. +||.|+|+.+.. ..+.
T Consensus 302 Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~-l~~~ 347 (381)
T 3dmg_A 302 IVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF-LKYE 347 (381)
T ss_dssp EEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT-SCHH
T ss_pred EEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC-CChH
Confidence 999988887221 23333344444332 699999987644 3443
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-08 Score=91.59 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=67.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+|||+|..+..++. . ...+|+++|.|+.|++.|+..+.... ++.++... .......++....+||
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~-~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~fD 118 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVS-R--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMD--ANRALEQFYEEKLQFD 118 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHH-T--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC--HHHHHHHHHHTTCCEE
T ss_pred CCCCEEEeCCccCHHHHHHHH-c--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECc--HHHHHHHHHhcCCCCC
Confidence 457999999999998887666 2 23689999999999999998775422 12222221 1111111112256899
Q ss_pred EEEecccccCCCCHHHHHHHH--HHHHhcCCCEEEEEecC
Q 012511 169 LVIASYVLGEVPSLQDRITIV--RQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i--~~Lw~~~gG~LVlVEpG 206 (462)
+|++...++.. ........+ .++++ +||.+++..+.
T Consensus 119 ~i~~~~~~~~~-~~~~~~~~l~~~~~L~-~gG~l~~~~~~ 156 (187)
T 2fhp_A 119 LVLLDPPYAKQ-EIVSQLEKMLERQLLT-NEAVIVCETDK 156 (187)
T ss_dssp EEEECCCGGGC-CHHHHHHHHHHTTCEE-EEEEEEEEEET
T ss_pred EEEECCCCCch-hHHHHHHHHHHhcccC-CCCEEEEEeCC
Confidence 99998775532 344444444 22233 68988876554
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-08 Score=94.77 Aligned_cols=103 Identities=14% Similarity=0.162 Sum_probs=71.5
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--C-CCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~-~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
..+.+|||+|||+|..+.+++...+ ...+++++|.|+.|++.|++.++... + +.++.. ++... ....+|
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~--~~~~~~ 163 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVG-PEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLK-----DIYEG--IEEENV 163 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECS-----CGGGC--CCCCSE
T ss_pred CCCCEEEEecCCchHHHHHHHHHhC-CCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEEC-----chhhc--cCCCCc
Confidence 3467999999999999988887633 24689999999999999998875422 2 222221 22222 235679
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
|+|+++ +++....+..+.++++ +||.++++++..
T Consensus 164 D~v~~~-----~~~~~~~l~~~~~~L~-~gG~l~~~~~~~ 197 (255)
T 3mb5_A 164 DHVILD-----LPQPERVVEHAAKALK-PGGFFVAYTPCS 197 (255)
T ss_dssp EEEEEC-----SSCGGGGHHHHHHHEE-EEEEEEEEESSH
T ss_pred CEEEEC-----CCCHHHHHHHHHHHcC-CCCEEEEEECCH
Confidence 999973 4455555555566665 699999988753
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-08 Score=95.05 Aligned_cols=119 Identities=11% Similarity=0.178 Sum_probs=73.6
Q ss_pred CchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCc
Q 012511 70 MPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPL 146 (462)
Q Consensus 70 ~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~ 146 (462)
+|..-......|..+.... ++.+|||+|||+|..+..++...+ ..+|++||+|+.|++.|++.++... ++.+
T Consensus 52 ~~~~~~~~~~~l~~~~~~~---~~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~ 126 (232)
T 3ntv_A 52 VPIVDRLTLDLIKQLIRMN---NVKNILEIGTAIGYSSMQFASISD--DIHVTTIERNETMIQYAKQNLATYHFENQVRI 126 (232)
T ss_dssp CCCCCHHHHHHHHHHHHHH---TCCEEEEECCSSSHHHHHHHTTCT--TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred CCCcCHHHHHHHHHHHhhc---CCCEEEEEeCchhHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence 3433334444454444332 357999999999999888887554 4689999999999999999876433 2223
Q ss_pred eecchhHhhhhhccC-CCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 147 IHSYNSIQALNKDIS-KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 147 i~~~~~~~~l~~~l~-~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
+.. +....++ ...++||+|++.... ......+..+.++++ +||.||+
T Consensus 127 ~~~-----d~~~~~~~~~~~~fD~V~~~~~~---~~~~~~l~~~~~~Lk-pgG~lv~ 174 (232)
T 3ntv_A 127 IEG-----NALEQFENVNDKVYDMIFIDAAK---AQSKKFFEIYTPLLK-HQGLVIT 174 (232)
T ss_dssp EES-----CGGGCHHHHTTSCEEEEEEETTS---SSHHHHHHHHGGGEE-EEEEEEE
T ss_pred EEC-----CHHHHHHhhccCCccEEEEcCcH---HHHHHHHHHHHHhcC-CCeEEEE
Confidence 322 1211122 225689999976432 223333333444443 6898876
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.74 E-value=4e-08 Score=94.11 Aligned_cols=105 Identities=9% Similarity=0.034 Sum_probs=66.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
++.+|||+|||+|..+..++..++. ..+|+++|.|+.|++.|++.+...+ ++.++... .......+ ...++||
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d--~~~~l~~~-~~~~~fD 138 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPA-DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGP--ALQSLESL-GECPAFD 138 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC--HHHHHHTC-CSCCCCS
T ss_pred CCCEEEEecCCchHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC--HHHHHHhc-CCCCCeE
Confidence 3579999999999999988887752 4689999999999999999876432 22222221 11111111 1235899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+|++..... .....+..+.++++ +||.||+-+
T Consensus 139 ~V~~d~~~~---~~~~~l~~~~~~Lk-pGG~lv~~~ 170 (248)
T 3tfw_A 139 LIFIDADKP---NNPHYLRWALRYSR-PGTLIIGDN 170 (248)
T ss_dssp EEEECSCGG---GHHHHHHHHHHTCC-TTCEEEEEC
T ss_pred EEEECCchH---HHHHHHHHHHHhcC-CCeEEEEeC
Confidence 999865322 22233333444443 799887744
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-08 Score=93.94 Aligned_cols=107 Identities=13% Similarity=0.097 Sum_probs=71.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhh-hhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQA-LNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~-l~~~l~~~~~~fD 168 (462)
...+|||+|||+|..+..++...+. ..|++||+|+.|++.|+..+... .++.++... ... +... ...++||
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~--~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~D--a~~~l~~~--~~~~~~d 107 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPE--QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHD--AVEVLHKM--IPDNSLR 107 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSC--HHHHHHHH--SCTTCEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCC--CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECC--HHHHHHHH--cCCCChh
Confidence 3469999999999999988887763 58999999999999999877532 233333321 111 1111 2467899
Q ss_pred EEEecccccCCCCHH--------HHHHHHHHHHhcCCCEEEEEec
Q 012511 169 LVIASYVLGEVPSLQ--------DRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 169 LVias~vL~el~~~~--------~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
.|++.+...+..... ..+..+.++++ |||.|+++..
T Consensus 108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~Lk-pGG~l~i~td 151 (218)
T 3dxy_A 108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQ-LGGVFHMATD 151 (218)
T ss_dssp EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEE-EEEEEEEEES
T ss_pred eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcC-CCcEEEEEeC
Confidence 999886544332211 23444555554 7999998764
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-08 Score=94.13 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=67.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..++...+ ..+|++||+|+.|++.|++.++.. .++.++... ..++... +...++||+
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~~~~~~-~~~~~~fD~ 144 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFP--HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDR--AETFGQR-KDVRESYDI 144 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESC--HHHHTTC-TTTTTCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEecc--HHHhccc-ccccCCccE
Confidence 457999999999987777776554 358999999999999999876532 233333321 1122100 112468999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|++..+ .+....+..+.++++ +||.|+++.
T Consensus 145 V~~~~~----~~~~~~l~~~~~~Lk-pgG~l~~~~ 174 (240)
T 1xdz_A 145 VTARAV----ARLSVLSELCLPLVK-KNGLFVALK 174 (240)
T ss_dssp EEEECC----SCHHHHHHHHGGGEE-EEEEEEEEE
T ss_pred EEEecc----CCHHHHHHHHHHhcC-CCCEEEEEe
Confidence 998763 444444444444444 699998874
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-08 Score=93.11 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=65.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCC-CCCc-
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISK-SERE- 166 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~-~~~~- 166 (462)
+.+|||+|||+|..+..++.. ...+|++||.|+.|++.|++.+.... ++.++.. +....++. ..++
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~~~~~ 125 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSR---QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQ-----SSLDFLKQPQNQPH 125 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECS-----CHHHHTTSCCSSCC
T ss_pred CCeEEEcCCccCHHHHHHHHc---cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEEC-----CHHHHHHhhccCCC
Confidence 479999999999988765542 23589999999999999998875432 2222221 12211221 2467
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHh----cCCCEEEEEecC
Q 012511 167 HDLVIASYVLGEVPSLQDRITIVRQLWD----LTRDVLVLVEPG 206 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r~~~i~~Lw~----~~gG~LVlVEpG 206 (462)
||+|++...++ ..... .+++.+.+ ++||.|++....
T Consensus 126 fD~I~~~~~~~-~~~~~---~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 126 FDVVFLDPPFH-FNLAE---QAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp EEEEEECCCSS-SCHHH---HHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CCEEEECCCCC-CccHH---HHHHHHHhcCccCCCcEEEEEECC
Confidence 99999987754 32233 34444421 279998876543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-08 Score=102.11 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=74.7
Q ss_pred HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCC
Q 012511 87 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
.++...+.+|||+|||+|..+..++...+ ..+|++||.|+.|++.|++.+.... +...+. ....++.. +...
T Consensus 217 ~l~~~~~~~VLDlGcG~G~~s~~la~~~p--~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~--~~~~D~~~--~~~~ 290 (375)
T 4dcm_A 217 HLPENLEGEIVDLGCGNGVIGLTLLDKNP--QAKVVFVDESPMAVASSRLNVETNMPEALDRCE--FMINNALS--GVEP 290 (375)
T ss_dssp TCCCSCCSEEEEETCTTCHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEE--EEECSTTT--TCCT
T ss_pred hCcccCCCeEEEEeCcchHHHHHHHHHCC--CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEE--EEechhhc--cCCC
Confidence 34444458999999999999999888765 3689999999999999998875432 100110 00112221 1235
Q ss_pred CcccEEEecccccCCCC--HHHHHHHHHHHHhc--CCCEEEEEecCCCCch
Q 012511 165 REHDLVIASYVLGEVPS--LQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 165 ~~fDLVias~vL~el~~--~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf 211 (462)
++||+|+++..++.... ......+++.+.+. +||.|+++-+.. .+|
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~-~~~ 340 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH-LDY 340 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT-SCH
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC-cCH
Confidence 68999999988875321 12223455555542 799999987643 455
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.5e-08 Score=95.06 Aligned_cols=108 Identities=15% Similarity=0.069 Sum_probs=73.3
Q ss_pred HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC---CCCCceecchhHhhhhhccCCC
Q 012511 87 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---KDLPLIHSYNSIQALNKDISKS 163 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~---~~~~~i~~~~~~~~l~~~l~~~ 163 (462)
.+....+.+|||+|||+|..+.+++..++ ...+++++|.|+.|++.|++.++.. .++.++.. ++.. .+..
T Consensus 91 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~-----d~~~-~~~~ 163 (258)
T 2pwy_A 91 LLDLAPGMRVLEAGTGSGGLTLFLARAVG-EKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLG-----KLEE-AELE 163 (258)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEES-----CGGG-CCCC
T ss_pred HcCCCCCCEEEEECCCcCHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEEC-----chhh-cCCC
Confidence 33333457999999999999988887643 2458999999999999999887532 22222221 2222 2233
Q ss_pred CCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 164 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 164 ~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
.++||+|++. +++....+..+.++++ +||.|+++.+..
T Consensus 164 ~~~~D~v~~~-----~~~~~~~l~~~~~~L~-~gG~l~~~~~~~ 201 (258)
T 2pwy_A 164 EAAYDGVALD-----LMEPWKVLEKAALALK-PDRFLVAYLPNI 201 (258)
T ss_dssp TTCEEEEEEE-----SSCGGGGHHHHHHHEE-EEEEEEEEESCH
T ss_pred CCCcCEEEEC-----CcCHHHHHHHHHHhCC-CCCEEEEEeCCH
Confidence 4689999983 4455555555666665 699999999753
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-08 Score=95.57 Aligned_cols=118 Identities=15% Similarity=0.171 Sum_probs=76.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..++.++..++ ..+|++||+|+.|++.|++.++.. .++.+++.. ..++.. .+....+||+
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d--~~~~~~-~~~~~~~fD~ 154 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRP--ELELVLVDATRKKVAFVERAIEVLGLKGARALWGR--AEVLAR-EAGHREAYAR 154 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECC--HHHHTT-STTTTTCEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECc--HHHhhc-ccccCCCceE
Confidence 467999999999988888887765 368999999999999999887643 233333321 112210 0012468999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
|++..+ .+.....+.+..+++ +||.++++.... ..+.+.++...+
T Consensus 155 I~s~a~----~~~~~ll~~~~~~Lk-pgG~l~~~~g~~--~~~e~~~~~~~l 199 (249)
T 3g89_A 155 AVARAV----APLCVLSELLLPFLE-VGGAAVAMKGPR--VEEELAPLPPAL 199 (249)
T ss_dssp EEEESS----CCHHHHHHHHGGGEE-EEEEEEEEECSC--CHHHHTTHHHHH
T ss_pred EEECCc----CCHHHHHHHHHHHcC-CCeEEEEEeCCC--cHHHHHHHHHHH
Confidence 998653 334444455555554 699999877432 234444444443
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.71 E-value=4.5e-08 Score=91.88 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=66.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhh--ccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK--DISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~--~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..+++.++. ..+|+++|.|+.|++.+++.++...++.++... +.. .+.....+||+
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d-----~~~~~~~~~~~~~~D~ 146 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIVEERRNIVPILGD-----ATKPEEYRALVPKVDV 146 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHSSCTTEEEEECC-----TTCGGGGTTTCCCEEE
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCC-CeEEEEEECCHHHHHHHHHHHhccCCCEEEEcc-----CCCcchhhcccCCceE
Confidence 4579999999999999888876542 358999999999999998887654333333221 111 01112358999
Q ss_pred EEecccccCCCCHHHH-HHHHHHHHhcCCCEEEEE
Q 012511 170 VIASYVLGEVPSLQDR-ITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 170 Vias~vL~el~~~~~r-~~~i~~Lw~~~gG~LVlV 203 (462)
|++... .++.... +..+.++++ +||.|+++
T Consensus 147 v~~~~~---~~~~~~~~l~~~~~~Lk-pgG~l~~~ 177 (227)
T 1g8a_A 147 IFEDVA---QPTQAKILIDNAEVYLK-RGGYGMIA 177 (227)
T ss_dssp EEECCC---STTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EEECCC---CHhHHHHHHHHHHHhcC-CCCEEEEE
Confidence 997654 2222222 444455554 69998886
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.1e-08 Score=100.53 Aligned_cols=111 Identities=14% Similarity=0.208 Sum_probs=75.4
Q ss_pred HHHHHHHCCCC-CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 81 LCEVRRRLPGF-SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 81 L~eL~~rlp~~-~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
...+...++.+ .+.+|||+|||+|..+..+.+.++. .+++++|. +.|++.|+.. .++.++.. ++...
T Consensus 197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~--~~~~~~D~-~~~~~~a~~~----~~v~~~~~-----d~~~~ 264 (372)
T 1fp1_D 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPL--IKGINFDL-PQVIENAPPL----SGIEHVGG-----DMFAS 264 (372)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-HHHHTTCCCC----TTEEEEEC-----CTTTC
T ss_pred HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCC--CeEEEeCh-HHHHHhhhhc----CCCEEEeC-----CcccC
Confidence 34555565534 3579999999999999999988763 48999999 9998776531 22222221 22221
Q ss_pred cCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 160 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
+ + .||+|+++++||++++ .....+++++.+. |||.|+|+|...+
T Consensus 265 ~--~--~~D~v~~~~~lh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 310 (372)
T 1fp1_D 265 V--P--QGDAMILKAVCHNWSD-EKCIEFLSNCHKALSPNGKVIIVEFILP 310 (372)
T ss_dssp C--C--CEEEEEEESSGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred C--C--CCCEEEEecccccCCH-HHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 2 2 2999999999999974 4444455555443 7999999986443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.1e-08 Score=93.75 Aligned_cols=100 Identities=13% Similarity=0.182 Sum_probs=70.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..+++..+ .+|+++|.|+.|++.|++.+.... ++.++.. +....++ ...+||+
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~~~~-~~~~fD~ 161 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVK---TDVYTIERIPELVEFAKRNLERAGVKNVHVILG-----DGSKGFP-PKAPYDV 161 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHC---SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-----CGGGCCG-GGCCEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEC-----CcccCCC-CCCCccE
Confidence 457999999999999888887654 589999999999999998875432 2222221 1211222 2345999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
|+++.++++++. .+.++++ +||.|++.-+..
T Consensus 162 Ii~~~~~~~~~~------~~~~~L~-pgG~lvi~~~~~ 192 (235)
T 1jg1_A 162 IIVTAGAPKIPE------PLIEQLK-IGGKLIIPVGSY 192 (235)
T ss_dssp EEECSBBSSCCH------HHHHTEE-EEEEEEEEECSS
T ss_pred EEECCcHHHHHH------HHHHhcC-CCcEEEEEEecC
Confidence 999999999862 2334444 699998876543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-07 Score=90.07 Aligned_cols=84 Identities=20% Similarity=0.317 Sum_probs=57.6
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhh
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNK 158 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~ 158 (462)
+..+...++ ..+.+|||+|||+|..+..++..++ ..+|+++|+|+.|++.|+..+.... ++.++.. ++..
T Consensus 99 ~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~--~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~-----d~~~ 170 (276)
T 2b3t_A 99 VEQALARLP-EQPCRILDLGTGTGAIALALASERP--DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS-----DWFS 170 (276)
T ss_dssp HHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCT--TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECC-----STTG
T ss_pred HHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEc-----chhh
Confidence 334444443 3457999999999999998887775 3589999999999999998875322 2222221 1221
Q ss_pred ccCCCCCcccEEEecc
Q 012511 159 DISKSEREHDLVIASY 174 (462)
Q Consensus 159 ~l~~~~~~fDLVias~ 174 (462)
.+ ..++||+|+++.
T Consensus 171 ~~--~~~~fD~Iv~np 184 (276)
T 2b3t_A 171 AL--AGQQFAMIVSNP 184 (276)
T ss_dssp GG--TTCCEEEEEECC
T ss_pred hc--ccCCccEEEECC
Confidence 12 246899999983
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.5e-08 Score=98.24 Aligned_cols=111 Identities=10% Similarity=0.215 Sum_probs=75.9
Q ss_pred HHHHHHCCCCC-CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc
Q 012511 82 CEVRRRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 82 ~eL~~rlp~~~-p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l 160 (462)
..+...++.+. ..+|||||||+|..+..+++.+|. .+++++|. +.|++.|+. ..++.++.. ++...+
T Consensus 192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~----~~~v~~~~~-----d~~~~~ 259 (368)
T 3reo_A 192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPS--INAINFDL-PHVIQDAPA----FSGVEHLGG-----DMFDGV 259 (368)
T ss_dssp HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-HHHHTTCCC----CTTEEEEEC-----CTTTCC
T ss_pred HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCC--CEEEEEeh-HHHHHhhhh----cCCCEEEec-----CCCCCC
Confidence 44444454343 479999999999999999998874 57999999 888876643 122322221 222222
Q ss_pred CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 161 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
+ . . |+|+++++||+++ .++...+++++.+. |||.|+|+|.-.+.
T Consensus 260 p--~-~-D~v~~~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 305 (368)
T 3reo_A 260 P--K-G-DAIFIKWICHDWS-DEHCLKLLKNCYAALPDHGKVIVAEYILPP 305 (368)
T ss_dssp C--C-C-SEEEEESCGGGBC-HHHHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred C--C-C-CEEEEechhhcCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 2 2 2 9999999999997 55555555555543 79999999976543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-08 Score=102.01 Aligned_cols=104 Identities=20% Similarity=0.247 Sum_probs=69.2
Q ss_pred CCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCC
Q 012511 88 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~ 164 (462)
....++.+|||+|||+|..+..+++. + ..+|++||.| .|++.|+++++.... +.++.. ++. .++..
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~-g--~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~-----d~~-~~~~~- 127 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQA-G--ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEG-----SVE-DISLP- 127 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHT-T--CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEES-----CGG-GCCCS-
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhc-C--CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEEC-----chh-hcCcC-
Confidence 34456789999999999988887774 2 3489999999 999999988764321 222221 222 12222
Q ss_pred CcccEEEecccccCCC---CHHHHHHHHHHHHhcCCCEEEEE
Q 012511 165 REHDLVIASYVLGEVP---SLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 165 ~~fDLVias~vL~el~---~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
++||+|++..+.+.+. .....+..+.++++ +||.|++-
T Consensus 128 ~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~Lk-pgG~li~~ 168 (376)
T 3r0q_C 128 EKVDVIISEWMGYFLLRESMFDSVISARDRWLK-PTGVMYPS 168 (376)
T ss_dssp SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEE-EEEEEESS
T ss_pred CcceEEEEcChhhcccchHHHHHHHHHHHhhCC-CCeEEEEe
Confidence 7899999966555553 23444455556665 68888653
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=8.2e-08 Score=97.37 Aligned_cols=112 Identities=17% Similarity=0.263 Sum_probs=77.3
Q ss_pred HHHHHHHCCCCC-CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 81 LCEVRRRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 81 L~eL~~rlp~~~-p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
...+...++.+. ..+|||||||+|..+.++.+.+|. .+++++|. +.|++.|+. ..++.++.. ++...
T Consensus 189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~----~~~v~~~~~-----D~~~~ 256 (364)
T 3p9c_A 189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPT--IKGVNFDL-PHVISEAPQ----FPGVTHVGG-----DMFKE 256 (364)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-HHHHTTCCC----CTTEEEEEC-----CTTTC
T ss_pred HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCC--CeEEEecC-HHHHHhhhh----cCCeEEEeC-----CcCCC
Confidence 345555555343 479999999999999999998874 47999999 888876543 122222221 22222
Q ss_pred cCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 160 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
++ . . |+|+++++||+++ .++...+++++.+. |||.|+|+|.-.+.
T Consensus 257 ~p--~-~-D~v~~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 303 (364)
T 3p9c_A 257 VP--S-G-DTILMKWILHDWS-DQHCATLLKNCYDALPAHGKVVLVQCILPV 303 (364)
T ss_dssp CC--C-C-SEEEEESCGGGSC-HHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred CC--C-C-CEEEehHHhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 22 2 2 9999999999997 55555566665553 79999999976544
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.9e-08 Score=95.22 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-----CCCCceecchhHhhhhhccCCCCC
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-----KDLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-----~~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
..+.+|||+|||+|..+.+++..++ ...+++++|.|+.|++.|++.+... .++.++.. ++.. .+....
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~-----d~~~-~~~~~~ 170 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVG-PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS-----DLAD-SELPDG 170 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS-----CGGG-CCCCTT
T ss_pred CCCCEEEEEcccccHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEEC-----chHh-cCCCCC
Confidence 3457999999999999888887543 2468999999999999999887532 22222221 2221 223356
Q ss_pred cccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 166 EHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 166 ~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+||+|++. ++++...+..+.++++ +||.|+++.+.
T Consensus 171 ~~D~v~~~-----~~~~~~~l~~~~~~L~-pgG~l~~~~~~ 205 (280)
T 1i9g_A 171 SVDRAVLD-----MLAPWEVLDAVSRLLV-AGGVLMVYVAT 205 (280)
T ss_dssp CEEEEEEE-----SSCGGGGHHHHHHHEE-EEEEEEEEESS
T ss_pred ceeEEEEC-----CcCHHHHHHHHHHhCC-CCCEEEEEeCC
Confidence 89999983 3445555555666665 69999998874
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-08 Score=100.52 Aligned_cols=101 Identities=17% Similarity=0.307 Sum_probs=70.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+|||+|..+..+.+.+|. .+++++|. +.|++.|+.. .++.++.. ++...++ .||+|+
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~----~~v~~~~~-----d~~~~~p----~~D~v~ 251 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPK--LKCIVFDR-PQVVENLSGS----NNLTYVGG-----DMFTSIP----NADAVL 251 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-HHHHTTCCCB----TTEEEEEC-----CTTTCCC----CCSEEE
T ss_pred cCceEEEeCCCccHHHHHHHHHCCC--CeEEEeeC-HHHHhhcccC----CCcEEEec-----cccCCCC----CccEEE
Confidence 3479999999999999999988863 48999999 9998876542 22222221 2211222 399999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--C---CCEEEEEecCCCC
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDL--T---RDVLVLVEPGTPQ 209 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~--~---gG~LVlVEpGtp~ 209 (462)
++++||++++. +...+++++.+. + ||.|+|+|...+.
T Consensus 252 ~~~~lh~~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~ 293 (352)
T 1fp2_A 252 LKYILHNWTDK-DCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293 (352)
T ss_dssp EESCGGGSCHH-HHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred eehhhccCCHH-HHHHHHHHHHHhCCCCCCCcEEEEEEeecCC
Confidence 99999999744 333444444432 7 9999999975543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-08 Score=94.89 Aligned_cols=106 Identities=10% Similarity=0.105 Sum_probs=66.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc--------CCCCCCceecchhHhhhhhccC--
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ--------GPKDLPLIHSYNSIQALNKDIS-- 161 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~--------~~~~~~~i~~~~~~~~l~~~l~-- 161 (462)
+..+|||||||+|..+..++..++ ...|+|||+|+.|++.|+..+. ...++.++... ....++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p--~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d-----~~~~l~~~ 118 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFP--DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSN-----AMKHLPNF 118 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGST--TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECC-----TTTCHHHH
T ss_pred CCCeEEEEccCCcHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECc-----HHHhhhhh
Confidence 346899999999999999888775 3589999999999999987653 12233333321 111122
Q ss_pred CCCCcccEEEecccccCCCCH--------HHHHHHHHHHHhcCCCEEEEEec
Q 012511 162 KSEREHDLVIASYVLGEVPSL--------QDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~~--------~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
...++||+|++.+...+.... ...+..+.++++ +||.|+++-.
T Consensus 119 ~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lk-pGG~l~~~td 169 (235)
T 3ckk_A 119 FYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLR-VGGLVYTITD 169 (235)
T ss_dssp CCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEE-EEEEEEEEES
T ss_pred CCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCC-CCCEEEEEeC
Confidence 345789999876543332211 123344455554 6999998654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.4e-08 Score=96.00 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=70.0
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-C--CCCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-K--DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-~--~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
..+.+|||+|||+|..+..+++... ...+++++|.|+.|++.|++.+... + ++.++.. ++.. +...++|
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~-----d~~~--~~~~~~f 180 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALN-GKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS-----DIAD--FISDQMY 180 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHT-TSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECS-----CTTT--CCCSCCE
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC-----chhc--cCcCCCc
Confidence 3457999999999999888887532 1468999999999999999988654 2 2222221 2222 2234689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
|+|++ ++++....+..+.++++ +||.|+++.+.
T Consensus 181 D~Vi~-----~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~ 213 (275)
T 1yb2_A 181 DAVIA-----DIPDPWNHVQKIASMMK-PGSVATFYLPN 213 (275)
T ss_dssp EEEEE-----CCSCGGGSHHHHHHTEE-EEEEEEEEESS
T ss_pred cEEEE-----cCcCHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence 99998 45555544444444444 79999998864
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6.1e-08 Score=95.96 Aligned_cols=106 Identities=13% Similarity=0.126 Sum_probs=66.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC------CCCCCceecchhHhhhhhccCC-CC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG------PKDLPLIHSYNSIQALNKDISK-SE 164 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~------~~~~~~i~~~~~~~~l~~~l~~-~~ 164 (462)
.+.+|||+|||+|..+..+++..+ ..+|++||+|+.|++.|++.+.. ..++.++.. +....+.. ..
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~--~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~-----D~~~~~~~~~~ 167 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGT--VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVG-----DGLAFVRQTPD 167 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTT--CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES-----CHHHHHHSSCT
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCC--CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEEC-----cHHHHHHhccC
Confidence 468999999999999988886432 46899999999999999987621 112222221 11111111 35
Q ss_pred CcccEEEecccccCCCCH----HHHHHHHHHHHhcCCCEEEEEec
Q 012511 165 REHDLVIASYVLGEVPSL----QDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~----~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
++||+|++.......+.. .+....+.++++ +||.|++...
T Consensus 168 ~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~~ 211 (304)
T 3bwc_A 168 NTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILK-PDGICCNQGE 211 (304)
T ss_dssp TCEEEEEEECC---------CCHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred CceeEEEECCCCccccchhhhHHHHHHHHHHhcC-CCcEEEEecC
Confidence 689999997665443311 234455555554 6999988754
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.9e-08 Score=92.79 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=68.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--C-CCceecchhHhhhhhccC--CCCCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSIQALNKDIS--KSERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~-~~~i~~~~~~~~l~~~l~--~~~~~ 166 (462)
++.+|||+|||+|..+..++..++. ..+|+++|.|+.|++.|++.++... + +.++.... ...+. .+. ...++
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~-~~~~~~~~~~ 140 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPK-DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA-KDTLA-ELIHAGQAWQ 140 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH-HHHHH-HHHTTTCTTC
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH-HHHHH-HhhhccCCCC
Confidence 3579999999999999988887762 4699999999999999999876432 1 22332211 11111 111 11268
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 167 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
||+|++..... .....+..+.++++ +||+||+-+.
T Consensus 141 fD~v~~~~~~~---~~~~~l~~~~~~L~-pgG~lv~~~~ 175 (225)
T 3tr6_A 141 YDLIYIDADKA---NTDLYYEESLKLLR-EGGLIAVDNV 175 (225)
T ss_dssp EEEEEECSCGG---GHHHHHHHHHHHEE-EEEEEEEECS
T ss_pred ccEEEECCCHH---HHHHHHHHHHHhcC-CCcEEEEeCC
Confidence 99999665321 22333444445554 6999987554
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.4e-08 Score=97.83 Aligned_cols=106 Identities=21% Similarity=0.237 Sum_probs=74.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+|||+|||+|..+..++...+ ..+|+++|.|+.|++.|++.+.... ...++.. +.. ....++||+|
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~-----d~~---~~~~~~fD~I 265 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSP--KIRLTLCDVSAPAVEASRATLAANGVEGEVFAS-----NVF---SEVKGRFDMI 265 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCT--TCBCEEEESBHHHHHHHHHHHHHTTCCCEEEEC-----STT---TTCCSCEEEE
T ss_pred CCCeEEEecCccCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEc-----ccc---ccccCCeeEE
Confidence 357999999999999988887654 2489999999999999998875432 1111111 111 1235689999
Q ss_pred EecccccCCC--CHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 171 IASYVLGEVP--SLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 171 ias~vL~el~--~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
+++..+++.. +......+++.+.+. +||.|+++.+..
T Consensus 266 v~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 266 ISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp EECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred EECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 9999988632 133345566666553 799999998754
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.4e-08 Score=99.37 Aligned_cols=100 Identities=19% Similarity=0.238 Sum_probs=66.2
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.++.+|||+|||+|..+..+++. + ..+|++||.|+ |++.|++.++..+ ++.++.. ++. .++...++|
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~-g--~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~-----d~~-~~~~~~~~~ 132 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKA-G--AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKG-----KIE-EVHLPVEKV 132 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-T--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEES-----CTT-TSCCSCSCE
T ss_pred cCCCEEEEeeccCcHHHHHHHHc-C--CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEe-----eHH-HhcCCCCcE
Confidence 45689999999999988887774 2 35899999996 9999998875432 2222221 121 123345789
Q ss_pred cEEEecc---cccCCCCHHHHHHHHHHHHhcCCCEEE
Q 012511 168 DLVIASY---VLGEVPSLQDRITIVRQLWDLTRDVLV 201 (462)
Q Consensus 168 DLVias~---vL~el~~~~~r~~~i~~Lw~~~gG~LV 201 (462)
|+|++.. .+.+.......+..+.++++ +||.++
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDSVLYAKNKYLA-KGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEE-EEEEEE
T ss_pred EEEEEcCchhhccCHHHHHHHHHHHHhhcC-CCcEEE
Confidence 9999866 44444333444445556665 689887
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=8.1e-08 Score=89.93 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=69.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-------CCCCceecchhHhhhhhccCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-------KDLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-------~~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
.+.+|||+|||+|..+..+++.++ ...+|+++|+|+.|++.+++.+... .++.++.. +... .....
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-----d~~~-~~~~~ 149 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVG-CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG-----DGRM-GYAEE 149 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES-----CGGG-CCGGG
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC-----Cccc-CcccC
Confidence 357999999999999888887654 2358999999999999999876542 22222221 1221 11234
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
.+||+|++...+.++.. .+.++++ +||.||+...
T Consensus 150 ~~fD~i~~~~~~~~~~~------~~~~~Lk-pgG~lv~~~~ 183 (226)
T 1i1n_A 150 APYDAIHVGAAAPVVPQ------ALIDQLK-PGGRLILPVG 183 (226)
T ss_dssp CCEEEEEECSBBSSCCH------HHHHTEE-EEEEEEEEES
T ss_pred CCcCEEEECCchHHHHH------HHHHhcC-CCcEEEEEEe
Confidence 67999999999988851 2344554 6999998765
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.3e-08 Score=90.34 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=65.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+|||+|..+..++..++. ..+|+++|+|+.|++.|++.++... .+.++.. +....++...+ ||
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~~-fD 128 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISI-SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVG-----DPLGIAAGQRD-ID 128 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCT-TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEES-----CHHHHHTTCCS-EE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEe-----cHHHHhccCCC-CC
Confidence 3579999999999999888887652 4689999999999999998775422 1222221 11111222235 99
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+|++... ..+....+..+.++++ +||.||+-+
T Consensus 129 ~v~~~~~---~~~~~~~l~~~~~~Lk-pgG~lv~~~ 160 (210)
T 3c3p_A 129 ILFMDCD---VFNGADVLERMNRCLA-KNALLIAVN 160 (210)
T ss_dssp EEEEETT---TSCHHHHHHHHGGGEE-EEEEEEEES
T ss_pred EEEEcCC---hhhhHHHHHHHHHhcC-CCeEEEEEC
Confidence 9998743 2223333333344443 689887643
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-07 Score=88.74 Aligned_cols=106 Identities=13% Similarity=0.123 Sum_probs=66.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--C-CCceecchhHhhhhhccC-CCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSIQALNKDIS-KSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~-~~~i~~~~~~~~l~~~l~-~~~~~f 167 (462)
++.+|||+|||+|..+..++..++. ..+|+++|.|+.|++.|++.+...+ + +.++.... ...+. .++ ....+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~-~~~~~~~~~f 134 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSS-GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLA-LDSLQ-QIENEKYEPF 134 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCS-SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH-HHHHH-HHHHTTCCCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH-HHHHH-HHHhcCCCCc
Confidence 3579999999999999988887752 4699999999999999998876432 1 22222211 11111 111 112579
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|+|++...... ....+..+.++++ +||.||+-+
T Consensus 135 D~v~~d~~~~~---~~~~l~~~~~~L~-pgG~lv~~~ 167 (223)
T 3duw_A 135 DFIFIDADKQN---NPAYFEWALKLSR-PGTVIIGDN 167 (223)
T ss_dssp SEEEECSCGGG---HHHHHHHHHHTCC-TTCEEEEES
T ss_pred CEEEEcCCcHH---HHHHHHHHHHhcC-CCcEEEEeC
Confidence 99998765322 2233334444443 799777643
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.9e-07 Score=92.88 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=75.8
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+|||||||+|..+.++++.+|. .++++.|. +.+++.|++.+.... ++.++.. ++-. .+...+|+|
T Consensus 180 ~~~v~DvGgG~G~~~~~l~~~~p~--~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~g-----D~~~---~~~~~~D~~ 248 (353)
T 4a6d_A 180 FPLMCDLGGGAGALAKECMSLYPG--CKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEG-----DFFK---DPLPEADLY 248 (353)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCSS--CEEEEEEC-HHHHHHHHHHSCC--CCSEEEEES-----CTTT---SCCCCCSEE
T ss_pred CCeEEeeCCCCCHHHHHHHHhCCC--ceeEeccC-HHHHHHHHHhhhhcccCceeeecC-----cccc---CCCCCceEE
Confidence 479999999999999999999984 47888897 889999998775432 2222221 1211 123468999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
++.++||..+ +++...+++++.+. |||.|+|+|.-.+
T Consensus 249 ~~~~vlh~~~-d~~~~~iL~~~~~al~pgg~lli~e~~~~ 287 (353)
T 4a6d_A 249 ILARVLHDWA-DGKCSHLLERIYHTCKPGGGILVIESLLD 287 (353)
T ss_dssp EEESSGGGSC-HHHHHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred EeeeecccCC-HHHHHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence 9999999997 55556666666653 8999999997543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=8.1e-08 Score=92.43 Aligned_cols=101 Identities=16% Similarity=0.099 Sum_probs=67.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC-CCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~-~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+|||+|||+|..+.+++.. + .+|+++|+|+.|++.|++.+..... +.++.. ++...+ ...+||+|
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~-g---~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~-----d~~~~~--~~~~fD~V 188 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKL-G---GKALGVDIDPMVLPQAEANAKRNGVRPRFLEG-----SLEAAL--PFGPFDLL 188 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-T---CEEEEEESCGGGHHHHHHHHHHTTCCCEEEES-----CHHHHG--GGCCEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHh-C---CeEEEEECCHHHHHHHHHHHHHcCCcEEEEEC-----ChhhcC--cCCCCCEE
Confidence 4579999999999998887773 2 2899999999999999987754321 222221 122112 24589999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
+++...+.+ ...+..+.++++ +||.|++.....
T Consensus 189 v~n~~~~~~---~~~l~~~~~~Lk-pgG~lils~~~~ 221 (254)
T 2nxc_A 189 VANLYAELH---AALAPRYREALV-PGGRALLTGILK 221 (254)
T ss_dssp EEECCHHHH---HHHHHHHHHHEE-EEEEEEEEEEEG
T ss_pred EECCcHHHH---HHHHHHHHHHcC-CCCEEEEEeecc
Confidence 997655432 223334444444 699999976543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=9.9e-08 Score=91.53 Aligned_cols=115 Identities=10% Similarity=0.130 Sum_probs=72.3
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQA 155 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~ 155 (462)
.+|..+... ..+.+|||+|||+|..+..++..++. ..+++++|.|+.|++.|++.++..+. +.++... ....
T Consensus 69 ~ll~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gd-a~~~ 143 (247)
T 1sui_A 69 QFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPE-DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGP-ALPV 143 (247)
T ss_dssp HHHHHHHHH---TTCCEEEEECCGGGHHHHHHHHHSCT-TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESC-HHHH
T ss_pred HHHHHHHHh---hCcCEEEEeCCCcCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECC-HHHH
Confidence 344444433 24689999999999998888887763 46999999999999999998764321 2222211 0111
Q ss_pred hhhccC-C--CCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 156 LNKDIS-K--SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 156 l~~~l~-~--~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
+. .+. . ..++||+|++.... .+.......+.++++ +||.||+-
T Consensus 144 l~-~l~~~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~Lk-pGG~lv~d 189 (247)
T 1sui_A 144 LD-EMIKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVK-VGGVIGYD 189 (247)
T ss_dssp HH-HHHHSGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBC-TTCCEEEE
T ss_pred HH-HHHhccCCCCCEEEEEEcCch---HHHHHHHHHHHHhCC-CCeEEEEe
Confidence 11 110 0 14689999987542 233344445555554 79988764
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.2e-08 Score=98.97 Aligned_cols=99 Identities=18% Similarity=0.251 Sum_probs=67.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--C-CCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~-~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
++.+|||+|||+|..+..+++. + ..+|++||.| .|++.|+++++... + +.++.. ++. .++.+.++||
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g--~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~-----d~~-~~~~~~~~fD 135 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-G--ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKG-----KVE-EVELPVEKVD 135 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-T--CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEES-----CTT-TCCCSSSCEE
T ss_pred CCCEEEEEeccchHHHHHHHHC-C--CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEEC-----cHH-HccCCCCceE
Confidence 4579999999999988888874 2 4589999999 59999998876432 1 222221 122 1233457999
Q ss_pred EEEeccc---ccCCCCHHHHHHHHHHHHhcCCCEEE
Q 012511 169 LVIASYV---LGEVPSLQDRITIVRQLWDLTRDVLV 201 (462)
Q Consensus 169 LVias~v---L~el~~~~~r~~~i~~Lw~~~gG~LV 201 (462)
+|++..+ +.+.......+..+.++++ +||.|+
T Consensus 136 ~Iis~~~~~~l~~~~~~~~~l~~~~r~Lk-pgG~li 170 (349)
T 3q7e_A 136 IIISEWMGYCLFYESMLNTVLHARDKWLA-PDGLIF 170 (349)
T ss_dssp EEEECCCBBTBTBTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred EEEEccccccccCchhHHHHHHHHHHhCC-CCCEEc
Confidence 9998665 4343455555566667775 689876
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.5e-08 Score=92.59 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=66.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccC-CCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDIS-KSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~-~~~~~f 167 (462)
.+.+|||+|||+|..+..++...+ .+|++||+++.|++.|++.+.... ++.++.. ++..... ...++|
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~---~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~-----D~~~~~~~~~~~~f 120 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTK---AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEY-----DLKKITDLIPKERA 120 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCC---CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECS-----CGGGGGGTSCTTCE
T ss_pred CCCEEEEcCCchhHHHHHHHHhcC---CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEEC-----cHHHhhhhhccCCc
Confidence 467999999999999988887533 389999999999999998876432 1222222 1221111 235789
Q ss_pred cEEEecccccCC-----CCH---------------HHHHHHHHHHHhcCCCEEEEEecC
Q 012511 168 DLVIASYVLGEV-----PSL---------------QDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 168 DLVias~vL~el-----~~~---------------~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
|+|+++-..... .+. ...+..+.++++ +||.|+++-+.
T Consensus 121 D~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~ 178 (259)
T 3lpm_A 121 DIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLK-QGGKANFVHRP 178 (259)
T ss_dssp EEEEECCCC-----------------------HHHHHHHHHHHHHEE-EEEEEEEEECT
T ss_pred cEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHcc-CCcEEEEEEcH
Confidence 999996433222 111 122333444443 79999998653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=91.95 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=70.1
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
..+.+|||+|||+|..+..++...+ ...+++++|.|+.+++.|++.+.... ++.++. .++...+ ..++|
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~~~~--~~~~~ 182 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVG-SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV-----RDISEGF--DEKDV 182 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTT-TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC-----CCGGGCC--SCCSE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE-----CCHHHcc--cCCcc
Confidence 3457999999999999988887643 24689999999999999998875432 111111 1222222 34579
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
|+|++. .++....+..+.++++ +||.|++..+.
T Consensus 183 D~V~~~-----~~~~~~~l~~~~~~L~-pgG~l~~~~~~ 215 (277)
T 1o54_A 183 DALFLD-----VPDPWNYIDKCWEALK-GGGRFATVCPT 215 (277)
T ss_dssp EEEEEC-----CSCGGGTHHHHHHHEE-EEEEEEEEESS
T ss_pred CEEEEC-----CcCHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence 999983 3445454555556655 69999998864
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.1e-08 Score=90.96 Aligned_cols=101 Identities=11% Similarity=0.164 Sum_probs=66.9
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCC--CCcc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKS--EREH 167 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~--~~~f 167 (462)
+.+|||+|||+|..+..++..++ ..+|+++|+|+.|++.|+..+.... ++.++.. +....++.. .++|
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~~~~~f 127 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALP--EATIVSIERDERRYEEAHKHVKALGLESRIELLFG-----DALQLGEKLELYPLF 127 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCT--TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-----CGGGSHHHHTTSCCE
T ss_pred CCEEEEecCCCcHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----CHHHHHHhcccCCCc
Confidence 57999999999999988888775 3689999999999999998875432 1222221 111111111 4689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|+|++...+. .....+..+.++++ +||.||+.+
T Consensus 128 D~I~~~~~~~---~~~~~l~~~~~~L~-pgG~lv~~~ 160 (233)
T 2gpy_A 128 DVLFIDAAKG---QYRRFFDMYSPMVR-PGGLILSDN 160 (233)
T ss_dssp EEEEEEGGGS---CHHHHHHHHGGGEE-EEEEEEEET
T ss_pred cEEEECCCHH---HHHHHHHHHHHHcC-CCeEEEEEc
Confidence 9999987754 23333333333333 689888754
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.2e-09 Score=99.15 Aligned_cols=79 Identities=14% Similarity=0.022 Sum_probs=58.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+|||+|..+..++.. ..+|+++|.|+.|++.|+..+.... ++.++.. ++.. ++ ...+||
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~~-~~-~~~~~D 146 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT----GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICG-----DFLL-LA-SFLKAD 146 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-----CHHH-HG-GGCCCS
T ss_pred CCCEEEECccccCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEEC-----ChHH-hc-ccCCCC
Confidence 3579999999999999888873 3689999999999999998876432 2222222 1221 11 346899
Q ss_pred EEEecccccCCCC
Q 012511 169 LVIASYVLGEVPS 181 (462)
Q Consensus 169 LVias~vL~el~~ 181 (462)
+|+++..++++..
T Consensus 147 ~v~~~~~~~~~~~ 159 (241)
T 3gdh_A 147 VVFLSPPWGGPDY 159 (241)
T ss_dssp EEEECCCCSSGGG
T ss_pred EEEECCCcCCcch
Confidence 9999999888753
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.3e-08 Score=89.84 Aligned_cols=88 Identities=15% Similarity=0.233 Sum_probs=62.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+|||+|..+..+. .+++++|+|+. ++.++.. ++. .++...++||+|+
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~-------~~v~~~D~s~~-------------~~~~~~~-----d~~-~~~~~~~~fD~v~ 120 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR-------NPVHCFDLASL-------------DPRVTVC-----DMA-QVPLEDESVDVAV 120 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC-------SCEEEEESSCS-------------STTEEES-----CTT-SCSCCTTCEEEEE
T ss_pred CCCeEEEECCcCCHHHHHhh-------ccEEEEeCCCC-------------CceEEEe-----ccc-cCCCCCCCEeEEE
Confidence 35799999999999776552 47999999987 1222221 121 1334467899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
++++|++ .+....+..+.++++ +||.|++++...
T Consensus 121 ~~~~l~~-~~~~~~l~~~~~~L~-~gG~l~i~~~~~ 154 (215)
T 2zfu_A 121 FCLSLMG-TNIRDFLEEANRVLK-PGGLLKVAEVSS 154 (215)
T ss_dssp EESCCCS-SCHHHHHHHHHHHEE-EEEEEEEEECGG
T ss_pred Eehhccc-cCHHHHHHHHHHhCC-CCeEEEEEEcCC
Confidence 9999975 566666666666665 699999998754
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.62 E-value=1e-07 Score=87.84 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=65.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+..++..++ ..+++++|+|+.|++.++..+.... ++.++.. ++.. .+ ..++||+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~-~~-~~~~~D~ 135 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRP--EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQS-----RVEE-FP-SEPPFDG 135 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEC-----CTTT-SC-CCSCEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEec-----chhh-CC-ccCCcCE
Confidence 357999999999998888888765 3589999999999999998775432 2222221 1221 11 2468999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|++.. +.+....+..+.++++ +||.|++..
T Consensus 136 i~~~~----~~~~~~~l~~~~~~L~-~gG~l~~~~ 165 (207)
T 1jsx_A 136 VISRA----FASLNDMVSWCHHLPG-EQGRFYALK 165 (207)
T ss_dssp EECSC----SSSHHHHHHHHTTSEE-EEEEEEEEE
T ss_pred EEEec----cCCHHHHHHHHHHhcC-CCcEEEEEe
Confidence 99754 2333333333333333 689988874
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-07 Score=89.84 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=63.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+|||||..+..+++..+. ..+|+++|.|+.|++......+...++..+..... ... .......+||+|+
T Consensus 76 ~g~~VLDlG~GtG~~t~~la~~v~~-~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~--~~~-~~~~~~~~~D~I~ 151 (232)
T 3id6_C 76 KGTKVLYLGAASGTTISHVSDIIEL-NGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADAR--FPQ-SYKSVVENVDVLY 151 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHTT-TSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTT--CGG-GTTTTCCCEEEEE
T ss_pred CCCEEEEEeecCCHHHHHHHHHhCC-CCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccc--cch-hhhccccceEEEE
Confidence 4579999999999988888887652 46999999999986543333322233333222110 000 0011235899999
Q ss_pred ecccccCCCCHHHH-HHHHHHHHhcCCCEEEEEecC
Q 012511 172 ASYVLGEVPSLQDR-ITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 172 as~vL~el~~~~~r-~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+...+ ++.... ...+.++++ +||.||+....
T Consensus 152 ~d~a~---~~~~~il~~~~~~~Lk-pGG~lvisik~ 183 (232)
T 3id6_C 152 VDIAQ---PDQTDIAIYNAKFFLK-VNGDMLLVIKA 183 (232)
T ss_dssp ECCCC---TTHHHHHHHHHHHHEE-EEEEEEEEEC-
T ss_pred ecCCC---hhHHHHHHHHHHHhCC-CCeEEEEEEcc
Confidence 87553 333222 223444554 69999987543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-07 Score=91.32 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=68.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC---CCC---CCceecchhHhhhhhcc-----
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG---PKD---LPLIHSYNSIQALNKDI----- 160 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~---~~~---~~~i~~~~~~~~l~~~l----- 160 (462)
.+.+|||+|||+|..+..++...+ ..+|++||+++.|++.|++.+.. ..- +.++.. ++....
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~--~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~-----D~~~~~~~~~~ 108 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLE--KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEA-----DVTLRAKARVE 108 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCT--TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEEC-----CTTCCHHHHHH
T ss_pred CCCEEEEeCChHhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeC-----CHHHHhhhhhh
Confidence 457999999999999988888765 36899999999999999998765 321 122221 111110
Q ss_pred -CCCCCcccEEEecccccCC------------------CCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 161 -SKSEREHDLVIASYVLGEV------------------PSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 161 -~~~~~~fDLVias~vL~el------------------~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
.....+||+|+++-..... ......+..+.++++ +||.|+++-+.
T Consensus 109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~ 172 (260)
T 2ozv_A 109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMV-SGGQLSLISRP 172 (260)
T ss_dssp TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEE-EEEEEEEEECG
T ss_pred hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcC-CCCEEEEEEcH
Confidence 1235689999997322211 012233344445554 69999987653
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-07 Score=95.37 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=65.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
++.+|||+|||+|..+..+++. + ..+|++||.| .|++.|++.++... .+.++.. ++. .++.+.++||
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g--~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~-----d~~-~~~~~~~~~D 107 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-G--AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRG-----KLE-DVHLPFPKVD 107 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-C--CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEES-----CTT-TSCCSSSCEE
T ss_pred CCCEEEEecCccHHHHHHHHHC-C--CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEEC-----chh-hccCCCCccc
Confidence 3579999999999988877763 2 3589999999 69999998875432 1222221 121 1233346899
Q ss_pred EEEeccc---ccCCCCHHHHHHHHHHHHhcCCCEEE
Q 012511 169 LVIASYV---LGEVPSLQDRITIVRQLWDLTRDVLV 201 (462)
Q Consensus 169 LVias~v---L~el~~~~~r~~~i~~Lw~~~gG~LV 201 (462)
+|++..+ |.+.......+..+.++++ +||.++
T Consensus 108 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~li 142 (328)
T 1g6q_1 108 IIISEWMGYFLLYESMMDTVLYARDHYLV-EGGLIF 142 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred EEEEeCchhhcccHHHHHHHHHHHHhhcC-CCeEEE
Confidence 9998754 3333334444455556665 689886
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.9e-08 Score=90.70 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=63.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhh--ccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK--DISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~--~l~~~~~~fDL 169 (462)
...+|||+|||+|..+..+++.++ ...+|+++|.|+.|++.+.+.++...++.++.. ++.. .++....+||+
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g-~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~-----d~~~~~~~~~~~~~~D~ 150 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVG-PDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIE-----DARHPHKYRMLIAMVDV 150 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHCTTEEEECS-----CTTCGGGGGGGCCCEEE
T ss_pred CCCEEEEEcccCCHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHhhccCCeEEEEc-----ccCChhhhcccCCcEEE
Confidence 357999999999999988888663 135899999998877666655543233332221 1111 12223568999
Q ss_pred EEecccccCCCCHHH-HHHHHHHHHhcCCCEEEEE
Q 012511 170 VIASYVLGEVPSLQD-RITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 170 Vias~vL~el~~~~~-r~~~i~~Lw~~~gG~LVlV 203 (462)
|++... .++... .+..+.++++ +||.|++.
T Consensus 151 V~~~~~---~~~~~~~~~~~~~~~Lk-pgG~l~i~ 181 (233)
T 2ipx_A 151 IFADVA---QPDQTRIVALNAHTFLR-NGGHFVIS 181 (233)
T ss_dssp EEECCC---CTTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EEEcCC---CccHHHHHHHHHHHHcC-CCeEEEEE
Confidence 998544 222211 1333444554 69988884
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.59 E-value=8.8e-08 Score=90.01 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=68.0
Q ss_pred CCeEEEECCchhHHHHHHHHhCCC----CccEEEEEeCCHHHHHHHHHhhcCC-------CCCCceecchhHhhhhhccC
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPR----SLEKVNLVEPSQSMQRAGQSLMQGP-------KDLPLIHSYNSIQALNKDIS 161 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~----~~~~v~~VD~S~~ml~~Ak~ll~~~-------~~~~~i~~~~~~~~l~~~l~ 161 (462)
..+|||+|||+|..+..+++..+. ...+|+++|.|+.|++.|++.+... .++.++.. +....++
T Consensus 85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-----d~~~~~~ 159 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG-----DGRKGYP 159 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES-----CGGGCCG
T ss_pred CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC-----CcccCCC
Confidence 479999999999988887775431 0148999999999999999876532 12222221 1222222
Q ss_pred CCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 162 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
...+||+|++..+++++. ..+.++++ +||.||+.-.
T Consensus 160 -~~~~fD~I~~~~~~~~~~------~~~~~~Lk-pgG~lvi~~~ 195 (227)
T 1r18_A 160 -PNAPYNAIHVGAAAPDTP------TELINQLA-SGGRLIVPVG 195 (227)
T ss_dssp -GGCSEEEEEECSCBSSCC------HHHHHTEE-EEEEEEEEES
T ss_pred -cCCCccEEEECCchHHHH------HHHHHHhc-CCCEEEEEEe
Confidence 236899999999999986 12334444 6999988654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-07 Score=96.03 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=69.2
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhh
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNK 158 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~ 158 (462)
..|...+...++.+|||+|||+|..+..++.. + ..+|++||.|+ |++.|+++++..+ ++.++.. ++..
T Consensus 40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g--~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~-----d~~~ 110 (348)
T 2y1w_A 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-G--ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPG-----KVEE 110 (348)
T ss_dssp HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT-T--CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEES-----CTTT
T ss_pred HHHHhccccCCcCEEEEcCCCccHHHHHHHhC-C--CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEc-----chhh
Confidence 34444444456689999999999988877763 2 35899999995 8899988775432 2222221 1221
Q ss_pred ccCCCCCcccEEEecccccCCCCHHHHHHHH---HHHHhcCCCEEEE
Q 012511 159 DISKSEREHDLVIASYVLGEVPSLQDRITIV---RQLWDLTRDVLVL 202 (462)
Q Consensus 159 ~l~~~~~~fDLVias~vL~el~~~~~r~~~i---~~Lw~~~gG~LVl 202 (462)
++ ..++||+|++..+++++... .....+ .++++ +||.+++
T Consensus 111 -~~-~~~~~D~Ivs~~~~~~~~~~-~~~~~l~~~~~~Lk-pgG~li~ 153 (348)
T 2y1w_A 111 -VS-LPEQVDIIISEPMGYMLFNE-RMLESYLHAKKYLK-PSGNMFP 153 (348)
T ss_dssp -CC-CSSCEEEEEECCCBTTBTTT-SHHHHHHHGGGGEE-EEEEEES
T ss_pred -CC-CCCceeEEEEeCchhcCChH-HHHHHHHHHHhhcC-CCeEEEE
Confidence 22 23589999999888877532 223333 34443 6888874
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=94.29 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=65.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC------CCCCceecchhHhhhhhccCCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP------KDLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~------~~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.+.+|||+|||+|..+..++...+ ..++++||+|+.|++.|++.+... .++.++.. +....++...+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~--~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~-----D~~~~l~~~~~ 188 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKS--VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE-----DASKFLENVTN 188 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTT--CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEES-----CHHHHHHHCCS
T ss_pred CCCEEEEEcCCccHHHHHHHHcCC--CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEc-----cHHHHHhhcCC
Confidence 468999999999999988876433 468999999999999999987642 11222221 11111212246
Q ss_pred cccEEEecccccCCCCH-----HHHHHHHHHHHhcCCCEEEEE
Q 012511 166 EHDLVIASYVLGEVPSL-----QDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 166 ~fDLVias~vL~el~~~-----~~r~~~i~~Lw~~~gG~LVlV 203 (462)
+||+|++.... .+... .+....+.++++ +||.|++.
T Consensus 189 ~fDvIi~d~~~-p~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~ 229 (321)
T 2pt6_A 189 TYDVIIVDSSD-PIGPAETLFNQNFYEKIYNALK-PNGYCVAQ 229 (321)
T ss_dssp CEEEEEEECCC-SSSGGGGGSSHHHHHHHHHHEE-EEEEEEEE
T ss_pred CceEEEECCcC-CCCcchhhhHHHHHHHHHHhcC-CCcEEEEE
Confidence 89999986432 11101 233445555554 68988874
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.5e-08 Score=94.82 Aligned_cols=101 Identities=10% Similarity=0.029 Sum_probs=63.7
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhh-hccCCCCCccc
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN-KDISKSEREHD 168 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~-~~l~~~~~~fD 168 (462)
...+.+|||+|||||.++..+++. ...+|++||.|+.|++.+...-. ...... ......+. ..+ +...||
T Consensus 83 ~~~g~~vLDiGcGTG~~t~~L~~~---ga~~V~aVDvs~~mL~~a~r~~~---rv~~~~-~~ni~~l~~~~l--~~~~fD 153 (291)
T 3hp7_A 83 SVEDMITIDIGASTGGFTDVMLQN---GAKLVYAVDVGTNQLVWKLRQDD---RVRSME-QYNFRYAEPVDF--TEGLPS 153 (291)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT---TCSEEEEECSSSSCSCHHHHTCT---TEEEEC-SCCGGGCCGGGC--TTCCCS
T ss_pred CccccEEEecCCCccHHHHHHHhC---CCCEEEEEECCHHHHHHHHHhCc---ccceec-ccCceecchhhC--CCCCCC
Confidence 345679999999999999777763 24589999999999987543211 110000 00011111 112 233599
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
+|++..+++.+ ...+..+.++++ |||.||++
T Consensus 154 ~v~~d~sf~sl---~~vL~e~~rvLk-pGG~lv~l 184 (291)
T 3hp7_A 154 FASIDVSFISL---NLILPALAKILV-DGGQVVAL 184 (291)
T ss_dssp EEEECCSSSCG---GGTHHHHHHHSC-TTCEEEEE
T ss_pred EEEEEeeHhhH---HHHHHHHHHHcC-cCCEEEEE
Confidence 99998888766 334555666665 79998886
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=92.45 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=67.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC------CCCceecchhHhhhhhccCCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK------DLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~------~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.+.+|||+|||+|..+..++...+ ..++++||+|+.|++.|++.+.... ++.++.. +....++...+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~--~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~-----D~~~~l~~~~~ 150 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKS--VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE-----DASKFLENVTN 150 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTT--CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEES-----CHHHHHHHCCS
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCC--CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEEC-----ChHHHHHhCCC
Confidence 568999999999999988876433 4699999999999999999876431 1222221 11111111256
Q ss_pred cccEEEecccccCCCCH----HHHHHHHHHHHhcCCCEEEEEe
Q 012511 166 EHDLVIASYVLGEVPSL----QDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 166 ~fDLVias~vL~el~~~----~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+||+|++.......+.. .+....+.++++ +||.|++.-
T Consensus 151 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~-pgG~lv~~~ 192 (283)
T 2i7c_A 151 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNALK-PNGYCVAQC 192 (283)
T ss_dssp CEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEE-EEEEEEEEC
T ss_pred CceEEEEcCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEEC
Confidence 89999985443222211 244455555554 689988753
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-07 Score=93.91 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=70.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC------CCCCceecchhHhhhhhccCCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP------KDLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~------~~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.+.+|||+|||+|..+..++...+ ..+|++||+|+.|++.|++.+... .++.++.. +....++...+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~--~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~-----D~~~~l~~~~~ 180 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHES--VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCG-----DGFEFLKNHKN 180 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTT--CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECS-----CHHHHHHHCTT
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCC--CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEC-----hHHHHHHhcCC
Confidence 468999999999999988877543 468999999999999999987542 11222211 11111222356
Q ss_pred cccEEEecccccCCCCH-----HHHHHHHHHHHhcCCCEEEEEecCCCCc-hHHHHHHHHH
Q 012511 166 EHDLVIASYVLGEVPSL-----QDRITIVRQLWDLTRDVLVLVEPGTPQG-SSIISQMRSH 220 (462)
Q Consensus 166 ~fDLVias~vL~el~~~-----~~r~~~i~~Lw~~~gG~LVlVEpGtp~G-f~~I~~aR~~ 220 (462)
+||+|++.... ++... .+....+.++++ +||.|++- .|++.. -..+..+++.
T Consensus 181 ~fD~Ii~d~~~-~~~~~~~l~t~~~l~~~~~~Lk-pgG~lv~~-~~~~~~~~~~~~~~~~~ 238 (314)
T 2b2c_A 181 EFDVIITDSSD-PVGPAESLFGQSYYELLRDALK-EDGILSSQ-GESVWLHLPLIAHLVAF 238 (314)
T ss_dssp CEEEEEECCC--------------HHHHHHHHEE-EEEEEEEE-CCCTTTCHHHHHHHHHH
T ss_pred CceEEEEcCCC-CCCcchhhhHHHHHHHHHhhcC-CCeEEEEE-CCCcccCHHHHHHHHHH
Confidence 89999986532 22111 223334444444 68888764 455432 2334444444
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=94.24 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=71.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC------CCCCCceecchhHhhhhhccCCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG------PKDLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~------~~~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.+.+|||+|||+|..+..++...+ ..++++||+|+.|++.|++.+.. ..++.++.. +....++...+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~--~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~-----Da~~~l~~~~~ 167 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPS--VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVG-----DGFEFMKQNQD 167 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTT--CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES-----CHHHHHHTCSS
T ss_pred CCCEEEEECCCchHHHHHHHHcCC--CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEEC-----cHHHHHhhCCC
Confidence 568999999999999988876533 46899999999999999987642 122222221 11111222356
Q ss_pred cccEEEecccccCCCC----HHHHHHHHHHHHhcCCCEEEEEecCCCC-chHHHHHHHHHH
Q 012511 166 EHDLVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLVEPGTPQ-GSSIISQMRSHI 221 (462)
Q Consensus 166 ~fDLVias~vL~el~~----~~~r~~~i~~Lw~~~gG~LVlVEpGtp~-Gf~~I~~aR~~l 221 (462)
+||+|++......-+. ..+....+.++++ +||.|++-. +++. .-..+..+++.+
T Consensus 168 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~-~~~~~~~~~~~~~~~~l 226 (304)
T 2o07_A 168 AFDVIITDSSDPMGPAESLFKESYYQLMKTALK-EDGVLCCQG-ECQWLHLDLIKEMRQFC 226 (304)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHEE-EEEEEEEEE-ECTTTCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCCcchhhhHHHHHHHHHhccC-CCeEEEEec-CCcccchHHHHHHHHHH
Confidence 8999998654322111 1223444455554 689888754 2332 223444444443
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.1e-08 Score=95.95 Aligned_cols=106 Identities=14% Similarity=0.206 Sum_probs=67.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccC--CCCCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDIS--KSERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~--~~~~~ 166 (462)
++.+|||+|||+|..+..++..++. ..+|++||+|+.|++.|++.++..+ ++.++.... ...+. .+. ...++
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda-~~~l~-~~~~~~~~~~ 136 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPD-DGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA-LDTLH-SLLNEGGEHQ 136 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCT-TCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH-HHHHH-HHHHHHCSSC
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH-HHHHH-HHhhccCCCC
Confidence 3579999999999999888887752 4699999999999999998876432 222332211 11111 110 01468
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 167 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
||+|++..... +....++.+.++++ +||.||+-+
T Consensus 137 fD~V~~d~~~~---~~~~~l~~~~~~Lk-pGG~lv~d~ 170 (242)
T 3r3h_A 137 FDFIFIDADKT---NYLNYYELALKLVT-PKGLIAIDN 170 (242)
T ss_dssp EEEEEEESCGG---GHHHHHHHHHHHEE-EEEEEEEEC
T ss_pred EeEEEEcCChH---HhHHHHHHHHHhcC-CCeEEEEEC
Confidence 99999875421 12222334444444 689888743
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-07 Score=88.63 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=70.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCC---CccEEEEEeCCHHHHHHHHHhhcCCC-------CCCceecchhHhhhhhccC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQGPK-------DLPLIHSYNSIQALNKDIS 161 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~---~~~~v~~VD~S~~ml~~Ak~ll~~~~-------~~~~i~~~~~~~~l~~~l~ 161 (462)
.+.+|||+|||+|..+..++...+. ...+|+++|.|+.|++.|++.+.... ++.++.. +.....+
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-----d~~~~~~ 154 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK-----NIYQVNE 154 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC-----CGGGCCH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC-----ChHhccc
Confidence 3579999999999988888876530 13489999999999999998875322 2222221 1111110
Q ss_pred ---CCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 162 ---KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 162 ---~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
....+||+|++...++++. ..+.++++ +||.||+.-+.
T Consensus 155 ~~~~~~~~fD~I~~~~~~~~~~------~~~~~~Lk-pgG~lv~~~~~ 195 (227)
T 2pbf_A 155 EEKKELGLFDAIHVGASASELP------EILVDLLA-ENGKLIIPIEE 195 (227)
T ss_dssp HHHHHHCCEEEEEECSBBSSCC------HHHHHHEE-EEEEEEEEEEE
T ss_pred ccCccCCCcCEEEECCchHHHH------HHHHHhcC-CCcEEEEEEcc
Confidence 1245799999999999885 23344554 69999887654
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=8.4e-08 Score=96.76 Aligned_cols=99 Identities=16% Similarity=0.331 Sum_probs=69.1
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
+.+|||+|||+|..+.++.+.++. .+++++|. +.|++.|+. ..++.++.. ++...+ + .||+|++
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~----~~~v~~~~~-----d~~~~~--~--~~D~v~~ 257 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPH--LKCTVFDQ-PQVVGNLTG----NENLNFVGG-----DMFKSI--P--SADAVLL 257 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTT--SEEEEEEC-HHHHSSCCC----CSSEEEEEC-----CTTTCC--C--CCSEEEE
T ss_pred CCEEEEECCCcCHHHHHHHHHCCC--CeEEEecc-HHHHhhccc----CCCcEEEeC-----ccCCCC--C--CceEEEE
Confidence 479999999999999999988863 48999999 788876543 122222221 222112 2 4999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--C---CCEEEEEecCCC
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDL--T---RDVLVLVEPGTP 208 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~--~---gG~LVlVEpGtp 208 (462)
+++||++++ .+...+++++.+. + ||.|+|+|...+
T Consensus 258 ~~vlh~~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 297 (358)
T 1zg3_A 258 KWVLHDWND-EQSLKILKNSKEAISHKGKDGKVIIIDISID 297 (358)
T ss_dssp ESCGGGSCH-HHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred cccccCCCH-HHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence 999999974 4444455555442 7 999999997543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.56 E-value=6.5e-07 Score=82.43 Aligned_cols=99 Identities=16% Similarity=0.192 Sum_probs=65.9
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
..+.+|||+|||+|..+..++.. + ..+++++|.|+.|++.|+..+.... ++.++.. +... + ..+||+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~-~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-----d~~~-~---~~~~D~ 115 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLL-G--AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIG-----DVSE-F---NSRVDI 115 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT-T--CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEES-----CGGG-C---CCCCSE
T ss_pred CCcCEEEEeeCCCCHHHHHHHHc-C--CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEEC-----chHH-c---CCCCCE
Confidence 35679999999999998888764 2 3479999999999999998876432 2222221 1221 2 248999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|+++..++.... .....+++.+.+..|+.+++
T Consensus 116 v~~~~p~~~~~~-~~~~~~l~~~~~~l~~~~~~ 147 (207)
T 1wy7_A 116 VIMNPPFGSQRK-HADRPFLLKAFEISDVVYSI 147 (207)
T ss_dssp EEECCCCSSSST-TTTHHHHHHHHHHCSEEEEE
T ss_pred EEEcCCCccccC-CchHHHHHHHHHhcCcEEEE
Confidence 999988777642 22234566666655444433
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.55 E-value=9.2e-08 Score=95.61 Aligned_cols=103 Identities=14% Similarity=0.126 Sum_probs=64.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-------------CCCCceecchhHhhhhh
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-------------KDLPLIHSYNSIQALNK 158 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-------------~~~~~i~~~~~~~~l~~ 158 (462)
.+.+|||+|||+|..+.+++...+ ...+|+++|.|+.|++.|++.+... .++.++.. ++..
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~-----d~~~ 178 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVG-SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK-----DISG 178 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES-----CTTC
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC-----ChHH
Confidence 457999999999999998887653 2368999999999999999877531 12222211 2221
Q ss_pred cc-CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 159 DI-SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 159 ~l-~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
.. +...++||+|++... ++...+..+.++++ +||.|++..+.
T Consensus 179 ~~~~~~~~~fD~V~~~~~-----~~~~~l~~~~~~Lk-pgG~lv~~~~~ 221 (336)
T 2b25_A 179 ATEDIKSLTFDAVALDML-----NPHVTLPVFYPHLK-HGGVCAVYVVN 221 (336)
T ss_dssp CC-------EEEEEECSS-----STTTTHHHHGGGEE-EEEEEEEEESS
T ss_pred cccccCCCCeeEEEECCC-----CHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence 11 123457999998532 22222334444444 79999998873
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.3e-07 Score=88.00 Aligned_cols=109 Identities=12% Similarity=0.180 Sum_probs=70.9
Q ss_pred CCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccC-CCCC
Q 012511 89 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDIS-KSER 165 (462)
Q Consensus 89 p~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~-~~~~ 165 (462)
|..++.+|||+|||+|..+..+++.++. .++++||+++.|++.|++.+.... ++.++.. +....+. ...+
T Consensus 86 p~p~~~rVLdIG~G~G~la~~la~~~p~--~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~-----Da~~~l~~~~~~ 158 (317)
T 3gjy_A 86 QDASKLRITHLGGGACTMARYFADVYPQ--SRNTVVELDAELARLSREWFDIPRAPRVKIRVD-----DARMVAESFTPA 158 (317)
T ss_dssp SCGGGCEEEEESCGGGHHHHHHHHHSTT--CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEES-----CHHHHHHTCCTT
T ss_pred CCCCCCEEEEEECCcCHHHHHHHHHCCC--cEEEEEECCHHHHHHHHHhccccCCCceEEEEC-----cHHHHHhhccCC
Confidence 4333569999999999999999987773 389999999999999999875421 2222221 1111111 2346
Q ss_pred cccEEEecccccCCCC----HHHHHHHHHHHHhcCCCEEEEEec
Q 012511 166 EHDLVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 166 ~fDLVias~vL~el~~----~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
+||+||+....+.-.. ..+....+.++++ +||.|++--.
T Consensus 159 ~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~Lk-pgGvlv~~~~ 201 (317)
T 3gjy_A 159 SRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLA-PGGLYVANCG 201 (317)
T ss_dssp CEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred CCCEEEECCCCccccchhhhHHHHHHHHHHhcC-CCcEEEEEec
Confidence 8999998643332111 1344555666665 6999887654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.8e-07 Score=84.92 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=68.3
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
..+.+|||+|||+|..+..++.. ..+++++|.|+.|++.|++.+.... ++.++. .++.... .....|
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-----~d~~~~~-~~~~~~ 159 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV----AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFN-----VDFKDAE-VPEGIF 159 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH----SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEEC-----SCTTTSC-CCTTCB
T ss_pred CCCCEEEEeCCCccHHHHHHHHh----CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEE-----cChhhcc-cCCCcc
Confidence 34579999999999988888775 3589999999999999998875432 121211 1122111 134579
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
|+|++. .++....+..+.++++ +||.++++.+.
T Consensus 160 D~v~~~-----~~~~~~~l~~~~~~L~-~gG~l~~~~~~ 192 (248)
T 2yvl_A 160 HAAFVD-----VREPWHYLEKVHKSLM-EGAPVGFLLPT 192 (248)
T ss_dssp SEEEEC-----SSCGGGGHHHHHHHBC-TTCEEEEEESS
T ss_pred cEEEEC-----CcCHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence 999973 3344444555556665 79999998875
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-07 Score=91.80 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=70.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC----C--CCCCceecchhHhhhhhccCCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG----P--KDLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~----~--~~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.+.+|||+|||+|..+..++...+ ..+|++||+|+.|++.|++.+.. . .++.++.. +....++...+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~--~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~-----D~~~~l~~~~~ 162 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDS--VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIA-----NGAEYVRKFKN 162 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTT--CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES-----CHHHHGGGCSS
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEEC-----cHHHHHhhCCC
Confidence 468999999999999988887543 46899999999999999987632 1 12222222 11111222346
Q ss_pred cccEEEecccccCCCC-----HHHHHHHHHHHHhcCCCEEEEEecCCCC-chHHHHHHHHHH
Q 012511 166 EHDLVIASYVLGEVPS-----LQDRITIVRQLWDLTRDVLVLVEPGTPQ-GSSIISQMRSHI 221 (462)
Q Consensus 166 ~fDLVias~vL~el~~-----~~~r~~~i~~Lw~~~gG~LVlVEpGtp~-Gf~~I~~aR~~l 221 (462)
+||+|++...-..+.. ..+....+.++++ +||.|++. -++|. .-+.+..+.+.+
T Consensus 163 ~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~-~~~~~~~~~~~~~~~~~l 222 (296)
T 1inl_A 163 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALK-EDGVFSAE-TEDPFYDIGWFKLAYRRI 222 (296)
T ss_dssp CEEEEEEEC----------CCSHHHHHHHHHHEE-EEEEEEEE-CCCTTTTHHHHHHHHHHH
T ss_pred CceEEEEcCCCcccCchhhhhHHHHHHHHHHhcC-CCcEEEEE-ccCcccCHHHHHHHHHHH
Confidence 8999998533211210 1233444555554 68988874 34442 223344444443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.54 E-value=2.1e-07 Score=88.76 Aligned_cols=105 Identities=9% Similarity=0.097 Sum_probs=65.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC----------CCCCCceecchhHhhhhhccC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG----------PKDLPLIHSYNSIQALNKDIS 161 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~----------~~~~~~i~~~~~~~~l~~~l~ 161 (462)
.+.+|||+|||+|..+..++...+ ...|++||+|+.|++.|++.+.. ..++.++... ....++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D-----~~~~l~ 121 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFP--EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGN-----AMKFLP 121 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHST--TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECC-----TTSCGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC--CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEecc-----HHHHHH
Confidence 346999999999999998888765 35899999999999999876542 2233222221 111122
Q ss_pred --CCCCcccEEEecccccCCCCH--------HHHHHHHHHHHhcCCCEEEEEe
Q 012511 162 --KSEREHDLVIASYVLGEVPSL--------QDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 162 --~~~~~fDLVias~vL~el~~~--------~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
...+.+|.|++.+.--+.... ...+..+.++++ +||.|+++-
T Consensus 122 ~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lk-pgG~l~~~t 173 (246)
T 2vdv_E 122 NFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLK-EGGVVYTIT 173 (246)
T ss_dssp GTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEE-EEEEEEEEE
T ss_pred HhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcC-CCCEEEEEe
Confidence 345688988855321111000 233444555554 699999854
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.9e-07 Score=89.82 Aligned_cols=108 Identities=16% Similarity=0.212 Sum_probs=68.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC----C--CCCCceecchhHhhhhhccCCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG----P--KDLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~----~--~~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.+.+|||+|||+|..+..+....+ ..++++||+++.|++.|++.+.. . .++.++.. +....++...+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~--~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~-----D~~~~l~~~~~ 147 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPS--VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD-----DGFMHIAKSEN 147 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTT--CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES-----CSHHHHHTCCS
T ss_pred CCCEEEEECCchHHHHHHHHhCCC--CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEEC-----cHHHHHhhCCC
Confidence 478999999999999888876433 46899999999999999987632 1 12222221 11111222346
Q ss_pred cccEEEecccccCCCC----HHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 166 EHDLVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 166 ~fDLVias~vL~el~~----~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
+||+|++.......+. ..+....+.++++ +||.|++- .++|
T Consensus 148 ~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~-pgG~lv~~-~~~~ 192 (275)
T 1iy9_A 148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALK-EDGIFVAQ-TDNP 192 (275)
T ss_dssp CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEE-EEEEEEEE-CCCT
T ss_pred CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEE-cCCc
Confidence 8999998644322111 1344555556665 68888774 3443
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-07 Score=88.50 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=70.8
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQA 155 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~ 155 (462)
++|..+.... ++.+|||+|||+|..+..++..++. ..+++++|.|+.|++.|++.++..+. +.++... ....
T Consensus 60 ~~l~~l~~~~---~~~~VLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd-a~~~ 134 (237)
T 3c3y_A 60 QLMSFVLKLV---NAKKTIEVGVFTGYSLLLTALSIPD-DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESD-AMLA 134 (237)
T ss_dssp HHHHHHHHHT---TCCEEEEECCTTSHHHHHHHHHSCT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC-HHHH
T ss_pred HHHHHHHHhh---CCCEEEEeCCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC-HHHH
Confidence 4455544432 4689999999999988888887763 46999999999999999998764321 2222211 1111
Q ss_pred hhhccC-C--CCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 156 LNKDIS-K--SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 156 l~~~l~-~--~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
+. .+. . ..++||+|++..... ......+.+.++++ +||.||+-
T Consensus 135 l~-~l~~~~~~~~~fD~I~~d~~~~---~~~~~l~~~~~~L~-pGG~lv~d 180 (237)
T 3c3y_A 135 LD-NLLQGQESEGSYDFGFVDADKP---NYIKYHERLMKLVK-VGGIVAYD 180 (237)
T ss_dssp HH-HHHHSTTCTTCEEEEEECSCGG---GHHHHHHHHHHHEE-EEEEEEEE
T ss_pred HH-HHHhccCCCCCcCEEEECCchH---HHHHHHHHHHHhcC-CCeEEEEe
Confidence 11 111 0 146899999864321 12233344445554 68888764
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-07 Score=94.71 Aligned_cols=104 Identities=17% Similarity=0.237 Sum_probs=67.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC-------CCCCCceecchhHhhhhhccCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG-------PKDLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~-------~~~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
.+.+|||+|||+|..+..+++..+ ..++++||+|+.|++.|++.+.. ..++.++.. +....++...
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~--~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~-----D~~~~l~~~~ 149 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPT--VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID-----DARAYLERTE 149 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTT--CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES-----CHHHHHHHCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEc-----hHHHHHHhcC
Confidence 468999999999999988877443 46899999999999999987642 112222221 1111122235
Q ss_pred CcccEEEecccccC---CCC----HHHHHHHHHHHHhcCCCEEEEE
Q 012511 165 REHDLVIASYVLGE---VPS----LQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 165 ~~fDLVias~vL~e---l~~----~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
++||+|++....+. -+. ..+....+.++++ +||.|++.
T Consensus 150 ~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~ 194 (314)
T 1uir_A 150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLN-PGGVMGMQ 194 (314)
T ss_dssp CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEE-EEEEEEEE
T ss_pred CCccEEEECCCCcccccCcchhccHHHHHHHHHHhcC-CCcEEEEE
Confidence 68999999866544 110 1233444555554 69998885
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-07 Score=96.47 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=63.9
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
++.++|||||||+|.++..+++. ...+|++||.|+ |++.|+++++..+. +.+++.. +. .+. .+.++
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~a---GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~-----~~-~~~-lpe~~ 150 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQA---GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGP-----VE-TVE-LPEQV 150 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT---TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESC-----TT-TCC-CSSCE
T ss_pred cCCCEEEEeCCCccHHHHHHHHh---CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeee-----ee-eec-CCccc
Confidence 45689999999999887766653 246899999995 88999988764331 2223221 11 122 23689
Q ss_pred cEEEe---cccccCCCCHHHHHHHHHHHHhcCCCEEE
Q 012511 168 DLVIA---SYVLGEVPSLQDRITIVRQLWDLTRDVLV 201 (462)
Q Consensus 168 DLVia---s~vL~el~~~~~r~~~i~~Lw~~~gG~LV 201 (462)
|+||+ .+.|.+-......+....++++ |||.+|
T Consensus 151 DvivsE~~~~~l~~e~~l~~~l~a~~r~Lk-p~G~~i 186 (376)
T 4hc4_A 151 DAIVSEWMGYGLLHESMLSSVLHARTKWLK-EGGLLL 186 (376)
T ss_dssp EEEECCCCBTTBTTTCSHHHHHHHHHHHEE-EEEEEE
T ss_pred cEEEeecccccccccchhhhHHHHHHhhCC-CCceEC
Confidence 99998 4444443335555666677776 566543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.3e-07 Score=87.91 Aligned_cols=106 Identities=11% Similarity=0.112 Sum_probs=68.0
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhc----------
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKD---------- 159 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~---------- 159 (462)
+.+|||+|||+|..+..++..++. ..+|+++|.|+.+++.|++.+...+. +.++.... ...+...
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPE-DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA-LETLQVLIDSKSAPSWA 138 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH-HHHHHHHHHCSSCCGGG
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH-HHHHHHHHhhccccccc
Confidence 579999999999999888887752 46899999999999999998754321 22222110 0111100
Q ss_pred cCCC-C-CcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 160 ISKS-E-REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 160 l~~~-~-~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
..+. . ++||+|++......+ ...+..+.++++ +||.||+.+
T Consensus 139 ~~f~~~~~~fD~I~~~~~~~~~---~~~l~~~~~~L~-pgG~lv~~~ 181 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADKENY---PNYYPLILKLLK-PGGLLIADN 181 (239)
T ss_dssp TTTCCSTTCEEEEEECSCGGGH---HHHHHHHHHHEE-EEEEEEEEC
T ss_pred ccccCCCCCcCEEEEeCCHHHH---HHHHHHHHHHcC-CCeEEEEEc
Confidence 0011 1 689999988654332 233444455554 699999865
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.9e-07 Score=88.02 Aligned_cols=103 Identities=15% Similarity=0.245 Sum_probs=66.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--C-CCceecchhHhhhhhccCCCCCcc--
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSIQALNKDISKSEREH-- 167 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~-~~~i~~~~~~~~l~~~l~~~~~~f-- 167 (462)
+.+|||+|||+|..+.+++.. + ..+|+++|+|+.|++.|++++.... + +.++.. ++...+ .++|
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~-~--~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~-----D~~~~~---~~~f~~ 192 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF-S--DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG-----EFLEPF---KEKFAS 192 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-S--SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES-----STTGGG---GGGTTT
T ss_pred CCEEEEEeCchhHHHHHHHHC-C--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC-----cchhhc---ccccCC
Confidence 469999999999999988876 4 4689999999999999999876432 1 222222 122112 1468
Q ss_pred -cEEEec------------ccccCCCCH-----HHHHHHHHHHH-hc--CCCEEEEEecCCC
Q 012511 168 -DLVIAS------------YVLGEVPSL-----QDRITIVRQLW-DL--TRDVLVLVEPGTP 208 (462)
Q Consensus 168 -DLVias------------~vL~el~~~-----~~r~~~i~~Lw-~~--~gG~LVlVEpGtp 208 (462)
|+|+++ .++ +-+.. .+-+.+++.+. +. +||.|++ |.|..
T Consensus 193 ~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~-e~~~~ 252 (284)
T 1nv8_A 193 IEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM-EIGED 252 (284)
T ss_dssp CCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE-ECCTT
T ss_pred CCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE-EECch
Confidence 999997 222 22110 01124556665 43 7898886 76654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.4e-07 Score=86.72 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=67.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCC--CCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKS--ERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~--~~~ 166 (462)
++.+|||+|||+|..+..++..++. ..+|+++|.|+.|++.|++.++..+ ++.++.... ...+. .++.. .++
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~~~~-~~~~~~~~~~ 145 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPA-DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA-LETLD-ELLAAGEAGT 145 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCT-TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH-HHHHH-HHHHTTCTTC
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCH-HHHHH-HHHhcCCCCC
Confidence 4579999999999999888886652 4699999999999999998875432 222222211 11111 11111 168
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 167 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
||+|++... .......+..+.++++ +||.||+-+
T Consensus 146 ~D~v~~d~~---~~~~~~~l~~~~~~L~-pgG~lv~~~ 179 (229)
T 2avd_A 146 FDVAVVDAD---KENCSAYYERCLQLLR-PGGILAVLR 179 (229)
T ss_dssp EEEEEECSC---STTHHHHHHHHHHHEE-EEEEEEEEC
T ss_pred ccEEEECCC---HHHHHHHHHHHHHHcC-CCeEEEEEC
Confidence 999998654 2222333444445554 689988854
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.7e-07 Score=82.87 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=30.2
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCH
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 128 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~ 128 (462)
..+|||+|||+|..+..+++.++....+|+++|.|+
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 58 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI 58 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence 469999999999999988887652136899999998
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.48 E-value=6.6e-08 Score=90.01 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=62.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC------CCCCCceecchhHhhhhhccCCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG------PKDLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~------~~~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.+.+|||+|||+|..+..++..++ ..+|++||+|+.|++.+.+.++. ..++.++.. ++. .++....
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p--~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~-----d~~-~l~~~~~ 98 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNP--SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWA-----TAE-RLPPLSG 98 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCT--TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEEC-----CST-TCCSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEec-----chh-hCCCCCC
Confidence 357999999999999998888764 46899999999999853322221 112222221 222 2333333
Q ss_pred cccEEEec---cccc--CCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 166 EHDLVIAS---YVLG--EVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 166 ~fDLVias---~vL~--el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
. |.|++. ..++ ++++....+..+.++++ +||.|++.
T Consensus 99 ~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~ 139 (218)
T 3mq2_A 99 V-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCR-PGASFLVA 139 (218)
T ss_dssp E-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEE-EEEEEEEE
T ss_pred C-CEEEEEccchhhhhhhhccHHHHHHHHHHHcC-CCcEEEEE
Confidence 4 655532 2332 55555555555666665 69999883
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.8e-07 Score=85.62 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=66.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCC--Cc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSE--RE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~--~~ 166 (462)
.+.+|||+|||+|..+..++..++. ..+|+++|.|+.+++.|++.+...+ .+.++... ....+. .++... ++
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d-~~~~l~-~l~~~~~~~~ 148 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPP-DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGP-ALATLE-QLTQGKPLPE 148 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCT-TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC-HHHHHH-HHHTSSSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC-HHHHHH-HHHhcCCCCC
Confidence 3579999999999999888887652 4689999999999999998875322 12222211 011111 122222 68
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 167 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
||+|++..... +....+..+.++++ +||.||+-+
T Consensus 149 fD~V~~d~~~~---~~~~~l~~~~~~Lk-pgG~lv~~~ 182 (232)
T 3cbg_A 149 FDLIFIDADKR---NYPRYYEIGLNLLR-RGGLMVIDN 182 (232)
T ss_dssp EEEEEECSCGG---GHHHHHHHHHHTEE-EEEEEEEEC
T ss_pred cCEEEECCCHH---HHHHHHHHHHHHcC-CCeEEEEeC
Confidence 99999875421 12232333334443 689888754
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=79.50 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=59.1
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCC-------ccEEEEEeCCHHHHHHHHHhhcCCCCCCce-ecchh----Hhhhhhcc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRS-------LEKVNLVEPSQSMQRAGQSLMQGPKDLPLI-HSYNS----IQALNKDI 160 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~-------~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i-~~~~~----~~~l~~~l 160 (462)
+.+|||+|||+|..+..++..++.. ..+++++|+|+.+ ...+...+ ..... ...+...
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~~~d~~~~~~~~~~~~~- 92 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLCPADVTDPRTSQRILEV- 92 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEECSCCTTSHHHHHHHHHH-
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEEeccCCCHHHHHHHHHh-
Confidence 4799999999999999988877521 1589999999842 01112222 11100 0001111
Q ss_pred CCCCCcccEEEecccccCCCC----HHHH----HHHHHHHHhc--CCCEEEEEecCC
Q 012511 161 SKSEREHDLVIASYVLGEVPS----LQDR----ITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~~----~~~r----~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
....+||+|++..+++.... .... ..++..+.+. +||.|++.....
T Consensus 93 -~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 93 -LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp -SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred -cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 12357999999765543221 1110 1334333332 799999887644
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.47 E-value=4.2e-07 Score=91.27 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=66.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC------CCCCceecchhHhhhhhccC-CCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP------KDLPLIHSYNSIQALNKDIS-KSE 164 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~------~~~~~i~~~~~~~~l~~~l~-~~~ 164 (462)
.+.+|||+|||+|..+..++...+ ..+|++||+|+.|++.|++.+... .++.++.. +....++ ...
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~--~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~-----D~~~~l~~~~~ 192 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHAS--IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG-----DGVAFLKNAAE 192 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTT--CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES-----CHHHHHHTSCT
T ss_pred CCCEEEEECCCccHHHHHHHHcCC--CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEC-----CHHHHHHhccC
Confidence 468999999999999988887433 468999999999999999876421 12222222 1111111 124
Q ss_pred CcccEEEecccccCCC-C---HHHHHHHHHHHHhcCCCEEEEE
Q 012511 165 REHDLVIASYVLGEVP-S---LQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 165 ~~fDLVias~vL~el~-~---~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
++||+|++......-+ . ..+....+.++++ +||.|++-
T Consensus 193 ~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~ 234 (334)
T 1xj5_A 193 GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALR-PGGVVCTQ 234 (334)
T ss_dssp TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEE-EEEEEEEE
T ss_pred CCccEEEECCCCccCcchhhhHHHHHHHHHHhcC-CCcEEEEe
Confidence 6899999864321111 1 1233445555554 68988875
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-06 Score=88.80 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=68.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|+.+..++...+ ...+++++|+|+.|++.|+..++..+ ++.++.. +... ++.....||+
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~-~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~-----D~~~-~~~~~~~~D~ 275 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLG-PTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRA-----DARH-LPRFFPEVDR 275 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHC-TTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEEC-----CGGG-GGGTCCCCSE
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhC-CCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeC-----Chhh-CccccCCCCE
Confidence 346999999999999988887652 13579999999999999999886543 2333322 1221 2223456899
Q ss_pred EEecccccCCCCH-HHH----HHHHHHHHhc--CCCEEEEEec
Q 012511 170 VIASYVLGEVPSL-QDR----ITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~-~~r----~~~i~~Lw~~--~gG~LVlVEp 205 (462)
||++-..++.... ... ..+++.+.+. +||.++++.+
T Consensus 276 Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 276 ILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp EEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred EEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9996544432211 111 2344444443 7999999866
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.6e-07 Score=90.09 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=66.2
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--C-CCceecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~-~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+.+|||+|||+|..+..++.... .+|+++|.|+.|++.|++.++..+ + +.++.. +... +.. ..+||+
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~---~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~-----D~~~-~~~-~~~fD~ 195 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGK---AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM-----DNRD-FPG-ENIADR 195 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTC---CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-----CTTT-CCC-CSCEEE
T ss_pred CCEEEEecccCCHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEEC-----CHHH-hcc-cCCccE
Confidence 57999999999998888777532 279999999999999998875322 1 112211 2221 222 568999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
|++... .+....+..+.++++ +||.|++.+..
T Consensus 196 Vi~~~p----~~~~~~l~~~~~~Lk-pgG~l~~~~~~ 227 (278)
T 2frn_A 196 ILMGYV----VRTHEFIPKALSIAK-DGAIIHYHNTV 227 (278)
T ss_dssp EEECCC----SSGGGGHHHHHHHEE-EEEEEEEEEEE
T ss_pred EEECCc----hhHHHHHHHHHHHCC-CCeEEEEEEee
Confidence 998644 222333344445554 69999998875
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.5e-07 Score=87.38 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=67.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.|.+|||+|||+|.+++++. + ...|+++|+++.|++.++..+.... .+... ...++.. .....+||+|+
T Consensus 105 ~p~~VLDlGCG~gpLal~~~---~--~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~---~v~D~~~--~~~~~~~DvvL 173 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER---G--IASVWGCDIHQGLGDVITPFAREKD-WDFTF---ALQDVLC--APPAEAGDLAL 173 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT---T--CSEEEEEESBHHHHHHHHHHHHHTT-CEEEE---EECCTTT--SCCCCBCSEEE
T ss_pred CCCeEEEecCCccHHHHHhc---c--CCeEEEEeCCHHHHHHHHHHHHhcC-CCceE---EEeeccc--CCCCCCcchHH
Confidence 57899999999999888766 3 5799999999999999999875432 22111 1122221 12345899999
Q ss_pred ecccccCCCCHH--HHHHHHHHHHhcCCCEEEEEe
Q 012511 172 ASYVLGEVPSLQ--DRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 172 as~vL~el~~~~--~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+.-++++|.+.. ....+++.| .+++++|-+.
T Consensus 174 llk~lh~LE~q~~~~~~~ll~aL--~~~~vvVsfP 206 (253)
T 3frh_A 174 IFKLLPLLEREQAGSAMALLQSL--NTPRMAVSFP 206 (253)
T ss_dssp EESCHHHHHHHSTTHHHHHHHHC--BCSEEEEEEE
T ss_pred HHHHHHHhhhhchhhHHHHHHHh--cCCCEEEEcC
Confidence 999999885322 122344432 2566666666
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.44 E-value=3e-07 Score=87.49 Aligned_cols=101 Identities=7% Similarity=0.011 Sum_probs=59.5
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhh-hccCCCCCcccE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN-KDISKSEREHDL 169 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~-~~l~~~~~~fDL 169 (462)
..+.+|||+|||+|..+..+++. + ..+|++||+|+.|++.|+............ ....+. ..++ ...||.
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~-g--~~~V~gvDis~~ml~~a~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~d~ 106 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQN-G--AKLVYALDVGTNQLAWKIRSDERVVVMEQF----NFRNAVLADFE--QGRPSF 106 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-T--CSEEEEECSSCCCCCHHHHTCTTEEEECSC----CGGGCCGGGCC--SCCCSE
T ss_pred CCCCEEEEEccCCCHHHHHHHhc-C--CCEEEEEcCCHHHHHHHHHhCccccccccc----eEEEeCHhHcC--cCCCCE
Confidence 34579999999999998887774 2 248999999999999877643221000000 000111 1111 112455
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+.+..++..+ ...+..+.++++ |||.|+++-
T Consensus 107 ~~~D~v~~~l---~~~l~~i~rvLk-pgG~lv~~~ 137 (232)
T 3opn_A 107 TSIDVSFISL---DLILPPLYEILE-KNGEVAALI 137 (232)
T ss_dssp EEECCSSSCG---GGTHHHHHHHSC-TTCEEEEEE
T ss_pred EEEEEEhhhH---HHHHHHHHHhcc-CCCEEEEEE
Confidence 5555444444 334455566665 799998863
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.3e-07 Score=88.78 Aligned_cols=120 Identities=17% Similarity=0.172 Sum_probs=70.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----------CCCceecchhHhhhhhccC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----------DLPLIHSYNSIQALNKDIS 161 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----------~~~~i~~~~~~~~l~~~l~ 161 (462)
.+.+|||+|||+|..+..++.. + ..++++||+|+.|++.|++.+ ... ..+.+... ..+....++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~--~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~--~~D~~~~l~ 148 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-D--VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLT--IGDGFEFIK 148 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-C--CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEE--ESCHHHHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-C--CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEE--ECchHHHhc
Confidence 4689999999999998888775 4 468999999999999999887 321 11222110 011111111
Q ss_pred CCCCcccEEEecccccCCCC----HHHHHHHHHHHHhcCCCEEEEEecCCCC-chHHHHHHHHH
Q 012511 162 KSEREHDLVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLVEPGTPQ-GSSIISQMRSH 220 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~----~~~r~~~i~~Lw~~~gG~LVlVEpGtp~-Gf~~I~~aR~~ 220 (462)
. .++||+|++......-+. ..+....+.++++ +||.|++-- +.+. .-+.+..+++.
T Consensus 149 ~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~-pgG~lv~~~-~~~~~~~~~~~~~~~~ 209 (281)
T 1mjf_A 149 N-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALN-NPGIYVTQA-GSVYLFTDELISAYKE 209 (281)
T ss_dssp H-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEE-EEEEEEEEE-EETTTSHHHHHHHHHH
T ss_pred c-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEEc-CCcccCHHHHHHHHHH
Confidence 2 468999998654321110 1233444455554 689888752 3332 23344444444
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.1e-07 Score=87.48 Aligned_cols=100 Identities=13% Similarity=0.157 Sum_probs=61.8
Q ss_pred CCeEEEECCchhHHHHHHHHh---CCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc--cCC-CCCc
Q 012511 93 PAKVLDFGAGTGSAFWALREV---WPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD--ISK-SERE 166 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~---~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~--l~~-~~~~ 166 (462)
+.+|||+|||+|..+..+++. .. ...+|++||+|+.|++.|+.+ . .++.++... .... ++. ...+
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~-~~~~V~gvD~s~~~l~~a~~~-~--~~v~~~~gD-----~~~~~~l~~~~~~~ 152 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMG-IDCQVIGIDRDLSRCQIPASD-M--ENITLHQGD-----CSDLTTFEHLREMA 152 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTT-CCCEEEEEESCCTTCCCCGGG-C--TTEEEEECC-----SSCSGGGGGGSSSC
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcC-CCCEEEEEeCChHHHHHHhcc-C--CceEEEECc-----chhHHHHHhhccCC
Confidence 579999999999888877775 22 246899999999999887732 1 223333221 1110 121 2237
Q ss_pred ccEEEecccccCCCCHHHHHHHHHH-HHhcCCCEEEEEec
Q 012511 167 HDLVIASYVLGEVPSLQDRITIVRQ-LWDLTRDVLVLVEP 205 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r~~~i~~-Lw~~~gG~LVlVEp 205 (462)
||+|++... + . +....+..+.+ +++ +||.||+.+.
T Consensus 153 fD~I~~d~~-~-~-~~~~~l~~~~r~~Lk-pGG~lv~~d~ 188 (236)
T 2bm8_A 153 HPLIFIDNA-H-A-NTFNIMKWAVDHLLE-EGDYFIIEDM 188 (236)
T ss_dssp SSEEEEESS-C-S-SHHHHHHHHHHHTCC-TTCEEEECSC
T ss_pred CCEEEECCc-h-H-hHHHHHHHHHHhhCC-CCCEEEEEeC
Confidence 999997654 2 2 33333333332 443 7999998653
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.7e-07 Score=96.05 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=69.4
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhh
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNK 158 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~ 158 (462)
..+...+...++.+|||+|||+|..+..++. .+ ..+|++||.|+ |++.|++.+...+ ++.++.. ++..
T Consensus 148 ~~il~~l~~~~~~~VLDiGcGtG~la~~la~-~~--~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~-----d~~~ 218 (480)
T 3b3j_A 148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQ-AG--ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPG-----KVEE 218 (480)
T ss_dssp HHHHHTGGGTTTCEEEEESCSTTHHHHHHHH-TT--CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEES-----CTTT
T ss_pred HHHHHhhhhcCCCEEEEecCcccHHHHHHHH-cC--CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEEC-----chhh
Confidence 3344444444568999999999998887776 33 45899999999 9999998775432 2222221 1221
Q ss_pred ccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 159 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 159 ~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
++ ..++||+|++..++.++... .....+..+.+. +||.|++
T Consensus 219 -~~-~~~~fD~Ivs~~~~~~~~~e-~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 219 -VS-LPEQVDIIISEPMGYMLFNE-RMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp -CC-CSSCEEEEECCCCHHHHTCH-HHHHHHHHGGGGEEEEEEEES
T ss_pred -Cc-cCCCeEEEEEeCchHhcCcH-HHHHHHHHHHHhcCCCCEEEE
Confidence 12 23589999998777766533 333344333332 6888873
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.40 E-value=7.6e-07 Score=89.35 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=81.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCC---ccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRS---LEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~---~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+.+|||+|||+|..+.++.+..+.. ...++|+|+++.|++.|+..+...+ +..++.. +... +....+|
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~-----D~l~--~~~~~~f 202 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQ-----DGLA--NLLVDPV 202 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEES-----CTTS--CCCCCCE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEEC-----CCCC--ccccCCc
Confidence 34799999999999998887765421 2689999999999999998754211 2222221 1111 1234689
Q ss_pred cEEEecccccCCCCHHH---------------HHHHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHHHHHH
Q 012511 168 DLVIASYVLGEVPSLQD---------------RITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHILW 223 (462)
Q Consensus 168 DLVias~vL~el~~~~~---------------r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~~lL~ 223 (462)
|+||++-.++.++..+. ...++..+.+. +||.++++-|..--+...-..+|+.|++
T Consensus 203 D~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~ 275 (344)
T 2f8l_A 203 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKK 275 (344)
T ss_dssp EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHH
T ss_pred cEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHh
Confidence 99999977665543321 12355555553 7999999987553333334777888764
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-07 Score=84.50 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=63.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC---CCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK---SEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~---~~~~fD 168 (462)
.+.+|||+|||. +++|.|+.|++.|++.+.. ++.++... +. .++. ..++||
T Consensus 12 ~g~~vL~~~~g~------------------v~vD~s~~ml~~a~~~~~~--~~~~~~~d-----~~-~~~~~~~~~~~fD 65 (176)
T 2ld4_A 12 AGQFVAVVWDKS------------------SPVEALKGLVDKLQALTGN--EGRVSVEN-----IK-QLLQSAHKESSFD 65 (176)
T ss_dssp TTSEEEEEECTT------------------SCHHHHHHHHHHHHHHTTT--TSEEEEEE-----GG-GGGGGCCCSSCEE
T ss_pred CCCEEEEecCCc------------------eeeeCCHHHHHHHHHhccc--CcEEEEec-----hh-cCccccCCCCCEe
Confidence 457999999995 1399999999999987643 23333221 22 1222 467899
Q ss_pred EEEecccccCC-CCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 169 LVIASYVLGEV-PSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 169 LVias~vL~el-~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
+|+++++|+++ ++....+..+.++++ |||.|++.++
T Consensus 66 ~V~~~~~l~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~ 102 (176)
T 2ld4_A 66 IILSGLVPGSTTLHSAEILAEIARILR-PGGCLFLKEP 102 (176)
T ss_dssp EEEECCSTTCCCCCCHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred EEEECChhhhcccCHHHHHHHHHHHCC-CCEEEEEEcc
Confidence 99999999999 777766667777775 6999999766
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-06 Score=82.29 Aligned_cols=112 Identities=12% Similarity=0.042 Sum_probs=72.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+.+|||+|||+|..+.+++...+ ..+|+++|.|+.+++.|++.++..+- +.++.. +.-..++. ..+||+
T Consensus 16 g~~VlDIGtGsG~l~i~la~~~~--~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~-----d~l~~l~~-~~~~D~ 87 (225)
T 3kr9_A 16 GAILLDVGSDHAYLPIELVERGQ--IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLA-----NGLAAFEE-TDQVSV 87 (225)
T ss_dssp TEEEEEETCSTTHHHHHHHHTTS--EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEEC-----SGGGGCCG-GGCCCE
T ss_pred CCEEEEeCCCcHHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEEC-----chhhhccc-CcCCCE
Confidence 46999999999999998887543 46899999999999999998865431 222221 22122321 126999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHHHHHH
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHILW 223 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~~lL~ 223 (462)
|+.+.+-. .-...++...++. ++|.||+ .|.+ | ...+|+++..
T Consensus 88 IviaG~Gg-----~~i~~Il~~~~~~L~~~~~lVl-q~~~--~---~~~vr~~L~~ 132 (225)
T 3kr9_A 88 ITIAGMGG-----RLIARILEEGLGKLANVERLIL-QPNN--R---EDDLRIWLQD 132 (225)
T ss_dssp EEEEEECH-----HHHHHHHHHTGGGCTTCCEEEE-EESS--C---HHHHHHHHHH
T ss_pred EEEcCCCh-----HHHHHHHHHHHHHhCCCCEEEE-ECCC--C---HHHHHHHHHH
Confidence 98776532 2233455555543 5777776 5553 4 4556888653
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-07 Score=91.60 Aligned_cols=106 Identities=10% Similarity=0.069 Sum_probs=72.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.|.+|||+|||.|.++.++....+ ..+|+++|+++.|+++++..+...+ +... ..+.++.. .....+||+|+
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p--~a~y~a~DId~~~le~a~~~l~~~g-~~~~---~~v~D~~~--~~p~~~~DvaL 203 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPA--ETVYIASDIDARLVGFVDEALTRLN-VPHR---TNVADLLE--DRLDEPADVTL 203 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCT--TCEEEEEESBHHHHHHHHHHHHHTT-CCEE---EEECCTTT--SCCCSCCSEEE
T ss_pred CCceeeeeccCccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHHhcC-CCce---EEEeeecc--cCCCCCcchHH
Confidence 478999999999988877665433 5799999999999999999886533 2211 11122321 23467899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHh--cCCCEEEEEecCC
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGT 207 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~--~~gG~LVlVEpGt 207 (462)
+.-++++|. .+++-..+ +++. .++|.+|-.+--+
T Consensus 204 ~lkti~~Le-~q~kg~g~-~ll~aL~~~~vvVSfp~ks 239 (281)
T 3lcv_B 204 LLKTLPCLE-TQQRGSGW-EVIDIVNSPNIVVTFPTKS 239 (281)
T ss_dssp ETTCHHHHH-HHSTTHHH-HHHHHSSCSEEEEEEECC-
T ss_pred HHHHHHHhh-hhhhHHHH-HHHHHhCCCCEEEeccchh
Confidence 999999996 33222222 3333 2678888877633
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-06 Score=86.86 Aligned_cols=107 Identities=14% Similarity=0.159 Sum_probs=67.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..+++.++. ..+|+++|+|+.|++.+++.++..+ ++.++.. +... ++....+||+
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~-~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~-----D~~~-~~~~~~~fD~ 190 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRN-DGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS-----SSLH-IGELNVEFDK 190 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTT-CSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS-----CGGG-GGGGCCCEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEEC-----Chhh-cccccccCCE
Confidence 4579999999999999988887652 4689999999999999998875422 2222221 1111 1112457999
Q ss_pred EEec------ccccCCCC------HH-------HHHHHHHHHHhc--CCCEEEEEec
Q 012511 170 VIAS------YVLGEVPS------LQ-------DRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 170 Vias------~vL~el~~------~~-------~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
|++. .++...++ .. ....++.++++. +||.||+..-
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 9983 22332221 11 113455555553 7999998654
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=6.9e-07 Score=87.29 Aligned_cols=116 Identities=15% Similarity=0.156 Sum_probs=65.4
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhh
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQAL 156 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l 156 (462)
|.++..+....+..+|||+|||||..+..+++. .+|++||.|+ |+..+++...... ++.++. ...++
T Consensus 71 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~---~~~D~ 141 (276)
T 2wa2_A 71 LAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ-----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFK---SKVDV 141 (276)
T ss_dssp HHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS-----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEE---CSCCG
T ss_pred HHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc-----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEe---ccCcH
Confidence 444444421223469999999999998887763 4799999998 6433221100000 111110 01122
Q ss_pred hhccCCCCCcccEEEecccccCCCCHH-------HHHHHHHHHHhcCCC--EEEEEecCCCCch
Q 012511 157 NKDISKSEREHDLVIASYVLGEVPSLQ-------DRITIVRQLWDLTRD--VLVLVEPGTPQGS 211 (462)
Q Consensus 157 ~~~l~~~~~~fDLVias~vL~el~~~~-------~r~~~i~~Lw~~~gG--~LVlVEpGtp~Gf 211 (462)
. .++ ..+||+|++..+ +...... ..+..+.++++ ||| .||+-... |...
T Consensus 142 ~-~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~Lk-pGG~~~~v~~~~~-~~~~ 199 (276)
T 2wa2_A 142 T-KME--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLE-YNQGCGFCVKVLN-PYSC 199 (276)
T ss_dssp G-GCC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHH-HSTTCEEEEEESC-CCSH
T ss_pred h-hCC--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhc-cCCCcEEEEEeCC-CCch
Confidence 2 132 568999999877 5443321 12344555565 699 88886655 5443
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.4e-07 Score=87.03 Aligned_cols=105 Identities=12% Similarity=0.178 Sum_probs=60.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
...+|||+|||||..+..+++. .+|++||.|+ |+..++....... ++.++.. ..++. .+ +..+|
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~-----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~---~~D~~-~l--~~~~f 141 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR-----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKS---RVDIH-TL--PVERT 141 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS-----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEEC---SCCTT-TS--CCCCC
T ss_pred CCCEEEEeCcCCCHHHHHHHHc-----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEec---ccCHh-HC--CCCCC
Confidence 3469999999999988887763 5799999998 6322211100000 1111100 11221 12 25689
Q ss_pred cEEEecccccCCCCHH---H----HHHHHHHHHhcCCC--EEEEEecCCCCch
Q 012511 168 DLVIASYVLGEVPSLQ---D----RITIVRQLWDLTRD--VLVLVEPGTPQGS 211 (462)
Q Consensus 168 DLVias~vL~el~~~~---~----r~~~i~~Lw~~~gG--~LVlVEpGtp~Gf 211 (462)
|+|++..+ +...... . .+..+.++++ ||| .||+-... |...
T Consensus 142 D~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~Lk-pGG~~~fv~kv~~-~~~~ 191 (265)
T 2oxt_A 142 DVIMCDVG-ESSPKWSVESERTIKILELLEKWKV-KNPSADFVVKVLC-PYSV 191 (265)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHH-HCTTCEEEEEESC-TTSH
T ss_pred cEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhc-cCCCeEEEEEeCC-CCCh
Confidence 99999877 5443321 1 2344555665 699 88886655 5554
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.4e-07 Score=87.61 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=33.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCC-HHHHHHH
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPS-QSMQRAG 134 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S-~~ml~~A 134 (462)
.+.+|||+|||+|..+..++...+ ..+|++||+| +.|++.|
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~--~~~v~GvD~s~~~ml~~A 65 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQ--NTFYIGIDPVKENLFDIS 65 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCT--TEEEEEECSCCGGGHHHH
T ss_pred CCCEEEEEeccCcHHHHHHHHhCC--CCEEEEEeCCHHHHHHHH
Confidence 347999999999999888876443 4689999999 8888776
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-06 Score=81.94 Aligned_cols=115 Identities=13% Similarity=-0.010 Sum_probs=71.0
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
+.+|||+|||+|..+.+++...+ ..+|+++|.|+.+++.|++.++..+-...+... ..+....+. ...+||+||+
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~~--~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~--~gD~l~~~~-~~~~~D~Ivi 96 (244)
T 3gnl_A 22 NERIADIGSDHAYLPCFAVKNQT--ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVR--KGNGLAVIE-KKDAIDTIVI 96 (244)
T ss_dssp SEEEEEETCSTTHHHHHHHHTTS--EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEE--ECSGGGGCC-GGGCCCEEEE
T ss_pred CCEEEEECCccHHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEE--ecchhhccC-ccccccEEEE
Confidence 46999999999999998887543 458999999999999999988653311111110 112222221 2235999987
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHHHHHH
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHILW 223 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~~lL~ 223 (462)
+.+..++ ...++...... +++.||+ -|- .| ...+|++|.+
T Consensus 97 agmGg~l-----I~~IL~~~~~~L~~~~~lIl-q~~--~~---~~~lr~~L~~ 138 (244)
T 3gnl_A 97 AGMGGTL-----IRTILEEGAAKLAGVTKLIL-QPN--IA---AWQLREWSEQ 138 (244)
T ss_dssp EEECHHH-----HHHHHHHTGGGGTTCCEEEE-EES--SC---HHHHHHHHHH
T ss_pred eCCchHH-----HHHHHHHHHHHhCCCCEEEE-EcC--CC---hHHHHHHHHH
Confidence 7654432 23344444433 4667666 332 24 4566888764
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.1e-06 Score=80.46 Aligned_cols=112 Identities=13% Similarity=0.043 Sum_probs=72.2
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+.+|||+|||+|..+.+++...+ ..+|+++|.|+.+++.|++.++..+- +.++.. +....+. ...+||+
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~~--~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~g-----D~l~~~~-~~~~~D~ 93 (230)
T 3lec_A 22 GARLLDVGSDHAYLPIFLLQMGY--CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLA-----NGLSAFE-EADNIDT 93 (230)
T ss_dssp TEEEEEETCSTTHHHHHHHHTTC--EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEEC-----SGGGGCC-GGGCCCE
T ss_pred CCEEEEECCchHHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----chhhccc-cccccCE
Confidence 46999999999999998887532 46899999999999999998865431 222221 2222221 2237999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHHHHHH
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHILW 223 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~~lL~ 223 (462)
|+.+.+..++ ...++...+.. ++|.||+ -|- .+ ...+|+++..
T Consensus 94 IviaGmGg~l-----I~~IL~~~~~~l~~~~~lIl-qp~--~~---~~~lr~~L~~ 138 (230)
T 3lec_A 94 ITICGMGGRL-----IADILNNDIDKLQHVKTLVL-QPN--NR---EDDLRKWLAA 138 (230)
T ss_dssp EEEEEECHHH-----HHHHHHHTGGGGTTCCEEEE-EES--SC---HHHHHHHHHH
T ss_pred EEEeCCchHH-----HHHHHHHHHHHhCcCCEEEE-ECC--CC---hHHHHHHHHH
Confidence 9877665433 23344444443 5677766 332 23 4566888764
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-06 Score=83.92 Aligned_cols=111 Identities=17% Similarity=0.097 Sum_probs=67.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..+++.++. ..+|+++|.|+.|++.+++.++..+ ++.++... ...+...+.....+||+
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~-~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D--~~~~~~~~~~~~~~fD~ 159 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKN-KGTIVAVEISKTRTKALKSNINRMGVLNTIIINAD--MRKYKDYLLKNEIFFDK 159 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC--HHHHHHHHHHTTCCEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCC-CCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCC--hHhcchhhhhccccCCE
Confidence 3579999999999999888887652 4689999999999999998876432 22222221 11111100002458999
Q ss_pred EEeccccc---CCC-----CH-------HHHHHHHHHHHhc--CCCEEEEEec
Q 012511 170 VIASYVLG---EVP-----SL-------QDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~---el~-----~~-------~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
|++.--.. .+. +. .....++..+++. +||.||+...
T Consensus 160 Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 160 ILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp EEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 99862211 110 00 1113345554443 7999998764
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=85.16 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=61.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.|.+|||+|||+|..+..+... + .++++||+++.|++.|++.+.... ..+.+... ..+.. ... ++||
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~--~~D~~---~~~-~~fD 141 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHA--KQLLD---LDI-KKYD 141 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEE--SSGGG---SCC-CCEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEE--echHH---HHH-hhCC
Confidence 4689999999999988877764 3 689999999999999987654310 01111110 11111 112 6899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
+||+. .+++......+.++++ +||.|++-
T Consensus 142 ~Ii~d-----~~dp~~~~~~~~~~L~-pgG~lv~~ 170 (262)
T 2cmg_A 142 LIFCL-----QEPDIHRIDGLKRMLK-EDGVFISV 170 (262)
T ss_dssp EEEES-----SCCCHHHHHHHHTTEE-EEEEEEEE
T ss_pred EEEEC-----CCChHHHHHHHHHhcC-CCcEEEEE
Confidence 99986 2334433344444443 69999875
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.30 E-value=9.5e-07 Score=85.87 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=68.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..++...+ ..+|+++|.|+.|++.|++.++..+ +..++.. +... .+. ..+||+
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~--~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~-----d~~~-~~~-~~~~D~ 189 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSK--PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILA-----DNRD-VEL-KDVADR 189 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTC--CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEES-----CGGG-CCC-TTCEEE
T ss_pred CCCEEEEecCcCCHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEC-----ChHH-cCc-cCCceE
Confidence 347999999999999888887654 3589999999999999998875432 2222221 2222 222 468999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
|++.... .....+..+.++++ +||.+++.+...
T Consensus 190 Vi~d~p~----~~~~~l~~~~~~Lk-pgG~l~~s~~~~ 222 (272)
T 3a27_A 190 VIMGYVH----KTHKFLDKTFEFLK-DRGVIHYHETVA 222 (272)
T ss_dssp EEECCCS----SGGGGHHHHHHHEE-EEEEEEEEEEEE
T ss_pred EEECCcc----cHHHHHHHHHHHcC-CCCEEEEEEcCc
Confidence 9988654 23333333334444 699998877643
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.29 E-value=8.1e-07 Score=89.09 Aligned_cols=110 Identities=12% Similarity=0.076 Sum_probs=64.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--C--CCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D--LPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~--~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
++.+|||+|||+|..+..++.. ..+|++||.|+.|++.|++.+.... + +.++... ...+.........+|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~----ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D--~~~~l~~~~~~~~~f 226 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA----GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICED--AMKFIQREERRGSTY 226 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT----TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSC--HHHHHHHHHHHTCCB
T ss_pred CCCcEEEcccccCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECc--HHHHHHHHHhcCCCc
Confidence 3579999999999998888762 2389999999999999998875321 1 2233221 111111010114589
Q ss_pred cEEEec---ccccCC---C-CHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 168 DLVIAS---YVLGEV---P-SLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 168 DLVias---~vL~el---~-~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
|+||+. +....- . .......++..+.+. +||.|++....+
T Consensus 227 D~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 227 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred eEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 999984 222210 0 012233445444433 799877655443
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-06 Score=89.43 Aligned_cols=111 Identities=13% Similarity=0.066 Sum_probs=66.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+.+|||+|||+|+.+..++.. ...+|++||.|+.|++.|++.++..+ ++.++... ...+...+.....+|
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~---ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D--~~~~l~~~~~~~~~f 286 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMG---GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMD--VFDYFKYARRHHLTY 286 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT---TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESC--HHHHHHHHHHTTCCE
T ss_pred CCCeEEEEeeccCHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECC--HHHHHHHHHHhCCCc
Confidence 3579999999999998888762 23589999999999999999875432 22233221 111111111123589
Q ss_pred cEEEecccc-----cCCCCHHH-HHHHHHHHHhc--CCCEEEEEecCC
Q 012511 168 DLVIASYVL-----GEVPSLQD-RITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 168 DLVias~vL-----~el~~~~~-r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
|+||+.--. ..+.+... ...++..+.+. +||.|++.....
T Consensus 287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999984222 23333222 22333333332 789888766543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.2e-06 Score=84.31 Aligned_cols=106 Identities=8% Similarity=0.003 Sum_probs=68.6
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCC-CCCc
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISK-SERE 166 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~-~~~~ 166 (462)
...+.+|||+| |+|..+.+++...+ ..+|+++|+|+.|++.|++.++..+ ++.++.. ++...++. ..++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~--~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~-----D~~~~l~~~~~~~ 241 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGL--PKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTF-----DLRKPLPDYALHK 241 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTC--CSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECC-----CTTSCCCTTTSSC
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEC-----hhhhhchhhccCC
Confidence 34568999999 99988888776533 2589999999999999999876422 2222222 23222332 2458
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 167 HDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
||+|+++..++.. ....++.++.+. +||.+++++-.+
T Consensus 242 fD~Vi~~~p~~~~----~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 242 FDTFITDPPETLE----AIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp BSEEEECCCSSHH----HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred ccEEEECCCCchH----HHHHHHHHHHHHcccCCeEEEEEEec
Confidence 9999998654432 123455555443 789665555544
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.6e-06 Score=84.03 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=58.5
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
++..+...+......+|||+|||+|..+..+++. ..+|++||+++.|++.+++.+....++.++... .. .
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~----~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD-----~l-~ 107 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKN----AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGD-----AL-K 107 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH----SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESC-----TT-T
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc----CCEEEEEECCHHHHHHHHHHhccCCCeEEEECc-----hh-h
Confidence 3444444444334579999999999999888874 358999999999999999887643444443322 21 1
Q ss_pred cCCCCCcccEEEeccc
Q 012511 160 ISKSEREHDLVIASYV 175 (462)
Q Consensus 160 l~~~~~~fDLVias~v 175 (462)
++.....||.||++..
T Consensus 108 ~~~~~~~fD~Iv~NlP 123 (295)
T 3gru_A 108 VDLNKLDFNKVVANLP 123 (295)
T ss_dssp SCGGGSCCSEEEEECC
T ss_pred CCcccCCccEEEEeCc
Confidence 2223346999997643
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.19 E-value=7.6e-06 Score=83.87 Aligned_cols=110 Identities=13% Similarity=-0.029 Sum_probs=65.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC-CCceecchhHhhhhhccCCCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~-~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
+.+|||+|||+|..+.+++.. ..+|++||.|+.|++.|++.++..+- ..+... +....++...+.||+|+
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~----ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~-----D~~~~l~~~~~~fD~Ii 285 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARK----GAYALAVDKDLEALGVLDQAALRLGLRVDIRHG-----EALPTLRGLEGPFHHVL 285 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEES-----CHHHHHHTCCCCEEEEE
T ss_pred CCeEEEcccchhHHHHHHHHc----CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEc-----cHHHHHHHhcCCCCEEE
Confidence 579999999999999888873 23499999999999999988753221 112211 11111111123499999
Q ss_pred ecccccCCC--CH----HHHHHHHHHHHhc--CCCEEEEEecCCCCch
Q 012511 172 ASYVLGEVP--SL----QDRITIVRQLWDL--TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 172 as~vL~el~--~~----~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf 211 (462)
+.--...-. .. .....++..+.+. +||.|++.........
T Consensus 286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~ 333 (393)
T 4dmg_A 286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRL 333 (393)
T ss_dssp ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCH
T ss_pred ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCH
Confidence 853211100 00 1112344444443 7999998876554443
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.1e-06 Score=86.69 Aligned_cols=116 Identities=18% Similarity=0.115 Sum_probs=70.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+|||+|..+.++++.++ ...+++|+|+++.|++.| .++.++.. ++.. . ....+||+||
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~-~~~~i~gvDi~~~~~~~a-------~~~~~~~~-----D~~~-~-~~~~~fD~Ii 103 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHG-TAYRFVGVEIDPKALDLP-------PWAEGILA-----DFLL-W-EPGEAFDLIL 103 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHC-SCSEEEEEESCTTTCCCC-------TTEEEEES-----CGGG-C-CCSSCEEEEE
T ss_pred CCCEEEECCCCChHHHHHHHHHhC-CCCeEEEEECCHHHHHhC-------CCCcEEeC-----Chhh-c-CccCCCCEEE
Confidence 456999999999999998887653 236899999999998766 12222221 1211 1 1246899999
Q ss_pred ec--ccccC--------CCCHHHHH-----------------HHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 172 AS--YVLGE--------VPSLQDRI-----------------TIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 172 as--~vL~e--------l~~~~~r~-----------------~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
++ |.-.. +. .+.+. .++..+.+. +||.+++|-|..-........+|+.++
T Consensus 104 ~NPPy~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~ 182 (421)
T 2ih2_A 104 GNPPYGIVGEASKYPIHVF-KAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLA 182 (421)
T ss_dssp ECCCCCCBSCTTTCSBCCC-HHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHH
T ss_pred ECcCccCcccccccccccC-HHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHH
Confidence 96 22111 22 22221 234444332 699999988764221122356788887
Q ss_pred H
Q 012511 223 W 223 (462)
Q Consensus 223 ~ 223 (462)
+
T Consensus 183 ~ 183 (421)
T 2ih2_A 183 R 183 (421)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=5.1e-07 Score=92.30 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=59.2
Q ss_pred CCCeEEEECCc------h-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCC
Q 012511 92 SPAKVLDFGAG------T-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 92 ~p~rVLDvG~G------~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
++.+|||+||| + |..+..+...++ ..+|++||+|+.|. . ...++.++.....-..+...+....
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP--~a~V~GVDiSp~m~------~-~~~rI~fv~GDa~dlpf~~~l~~~d 286 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFP--RGQIYGLDIMDKSH------V-DELRIRTIQGDQNDAEFLDRIARRY 286 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCT--TCEEEEEESSCCGG------G-CBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCC--CCEEEEEECCHHHh------h-cCCCcEEEEecccccchhhhhhccc
Confidence 56899999999 4 554444555565 36899999999983 1 1123333322110000000010114
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
++||+|++.. .++. .+....++.+++. +||.+|+.+..
T Consensus 287 ~sFDlVisdg-sH~~---~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 287 GPFDIVIDDG-SHIN---AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CCEEEEEECS-CCCH---HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred CCccEEEECC-cccc---hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 6899999864 3443 3344566666654 79999997644
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.16 E-value=1e-05 Score=84.26 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=71.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccC--CCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDIS--KSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~--~~~~~f 167 (462)
.+.+|||+|||+|..+..+++.++. ..+++++|+|+.+++.++..++..+ ++.++.. +... ++ ...++|
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~-~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~-----D~~~-~~~~~~~~~f 331 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKN-KGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVK-----DARK-APEIIGEEVA 331 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECS-----CTTC-CSSSSCSSCE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCC-CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEc-----Chhh-cchhhccCCC
Confidence 3579999999999999988887752 3689999999999999998876432 2222211 1211 21 223679
Q ss_pred cEEEe------cccccCCCCHHH-------------HHHHHHHHHhc--CCCEEEEEecCC
Q 012511 168 DLVIA------SYVLGEVPSLQD-------------RITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 168 DLVia------s~vL~el~~~~~-------------r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
|+|++ ..+++..++..- ...++.++++. +||.||++.-..
T Consensus 332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99996 334444433210 13466666664 799999887643
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=7.7e-06 Score=83.12 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=66.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+|||+|+.+..++...+ ..+++++|+|+.|++.|+..+...+ ++.++.. +.. .++....+||
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~--~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~-----D~~-~~~~~~~~fD 288 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRY--SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQG-----DAT-QLSQYVDSVD 288 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTC--CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEEC-----CGG-GGGGTCSCEE
T ss_pred CCCEEEEccCcCcHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC-----Chh-hCCcccCCcC
Confidence 347999999999999988887532 2379999999999999999876432 2222222 122 1333457899
Q ss_pred EEEecccccCCC----CHHHH-HHHHHHHHhcCCCEEEEEec
Q 012511 169 LVIASYVLGEVP----SLQDR-ITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 169 LVias~vL~el~----~~~~r-~~~i~~Lw~~~gG~LVlVEp 205 (462)
+||++-..++-. ..... ..+++.+.+..+|.++++..
T Consensus 289 ~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l~g~~~~i~~ 330 (373)
T 3tm4_A 289 FAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEKRGVFITT 330 (373)
T ss_dssp EEEEECCCC------CCHHHHHHHHHHHHHHHEEEEEEEEES
T ss_pred EEEECCCCCcccCcchhHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 999975544321 12221 23444444423677777754
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.15 E-value=7.5e-06 Score=75.26 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=32.6
Q ss_pred HHHHHHCCCC-CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHH
Q 012511 82 CEVRRRLPGF-SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQS 129 (462)
Q Consensus 82 ~eL~~rlp~~-~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ 129 (462)
.+|..+...+ ++.+|||+|||||..+..+++. ..+|++||+++.
T Consensus 14 ~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~----~~~V~gvD~~~~ 58 (191)
T 3dou_A 14 EFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL----ARKIISIDLQEM 58 (191)
T ss_dssp HHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT----CSEEEEEESSCC
T ss_pred HHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc----CCcEEEEecccc
Confidence 3444443333 3479999999999999888764 468999999974
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.14 E-value=6.5e-06 Score=80.56 Aligned_cols=86 Identities=20% Similarity=0.164 Sum_probs=56.7
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhh
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALN 157 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~ 157 (462)
+..+...++...+.+|||+|||+|..+..+++. ..+|++||+|+.|++.+++.+.... ++.++.. +..
T Consensus 17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----D~~ 87 (285)
T 1zq9_A 17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK----AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVG-----DVL 87 (285)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH----SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEES-----CTT
T ss_pred HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEc-----cee
Confidence 334444444345579999999999998888874 3489999999999999998875432 1222221 111
Q ss_pred hccCCCCCcccEEEecccccC
Q 012511 158 KDISKSEREHDLVIASYVLGE 178 (462)
Q Consensus 158 ~~l~~~~~~fDLVias~vL~e 178 (462)
. ++ ...||+|+++...+.
T Consensus 88 ~-~~--~~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 88 K-TD--LPFFDTCVANLPYQI 105 (285)
T ss_dssp T-SC--CCCCSEEEEECCGGG
T ss_pred c-cc--chhhcEEEEecCccc
Confidence 1 12 237999998655443
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=8.3e-06 Score=84.56 Aligned_cols=120 Identities=18% Similarity=0.180 Sum_probs=71.3
Q ss_pred CchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCce
Q 012511 70 MPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLI 147 (462)
Q Consensus 70 ~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i 147 (462)
++.+-.....++..+...+....+.+|||+|||+|+.+..++.. ..+|+++|.|+.|++.|+..+.... ++.++
T Consensus 264 ~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~----~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~ 339 (433)
T 1uwv_A 264 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ----AASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 (433)
T ss_dssp CCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Confidence 34443334444444444443334579999999999999888863 4689999999999999998875322 23232
Q ss_pred ecchhHhhhhhcc---CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 148 HSYNSIQALNKDI---SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 148 ~~~~~~~~l~~~l---~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
.. ++...+ +....+||+|++.---..+ . ++++.+.+...+.+|.|.
T Consensus 340 ~~-----d~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~---~~~~~l~~~~p~~ivyvs 388 (433)
T 1uwv_A 340 HE-----NLEEDVTKQPWAKNGFDKVLLDPARAGA---A---GVMQQIIKLEPIRIVYVS 388 (433)
T ss_dssp EC-----CTTSCCSSSGGGTTCCSEEEECCCTTCC---H---HHHHHHHHHCCSEEEEEE
T ss_pred EC-----CHHHHhhhhhhhcCCCCEEEECCCCccH---H---HHHHHHHhcCCCeEEEEE
Confidence 22 122111 2234579999985322222 1 344555443335555554
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.12 E-value=4.7e-06 Score=79.39 Aligned_cols=83 Identities=11% Similarity=0.072 Sum_probs=52.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--C-CCceecchhHhh-hhhccCCC-CCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSIQA-LNKDISKS-ERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~-~~~i~~~~~~~~-l~~~l~~~-~~~ 166 (462)
.+.+|||+|||+|..+..++...+ ..+++++|+|+.|++.|++.+.... + +.++... ..+ +...++.. ..+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~~~~~~~~~~ 140 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN--GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP--QKTLLMDALKEESEII 140 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC--TTCSSTTTSTTCCSCC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcc--hhhhhhhhhhcccCCc
Confidence 457999999999987777666543 2589999999999999998875432 1 2222211 000 11112111 258
Q ss_pred ccEEEecccccC
Q 012511 167 HDLVIASYVLGE 178 (462)
Q Consensus 167 fDLVias~vL~e 178 (462)
||+|+++-..+.
T Consensus 141 fD~i~~npp~~~ 152 (254)
T 2h00_A 141 YDFCMCNPPFFA 152 (254)
T ss_dssp BSEEEECCCCC-
T ss_pred ccEEEECCCCcc
Confidence 999999855443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.7e-06 Score=86.67 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=68.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|+.+..++.. ..+|+++|.|+.|++.|+..+...+ ++.++... ...+...+.....+||+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~----~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d--~~~~~~~~~~~~~~fD~ 282 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG----FREVVAVDSSAEALRRAEENARLNGLGNVRVLEAN--AFDLLRRLEKEGERFDL 282 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH----EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESC--HHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECC--HHHHHHHHHhcCCCeeE
Confidence 3579999999999998888774 3589999999999999998875432 22222221 11111111112468999
Q ss_pred EEecccccCCC--CH----HHHHHHHHHHHhc--CCCEEEEEecCCCCc
Q 012511 170 VIASYVLGEVP--SL----QDRITIVRQLWDL--TRDVLVLVEPGTPQG 210 (462)
Q Consensus 170 Vias~vL~el~--~~----~~r~~~i~~Lw~~--~gG~LVlVEpGtp~G 210 (462)
|++.--..... .. .....++..+.+. +||.|++........
T Consensus 283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 331 (382)
T 1wxx_A 283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT 331 (382)
T ss_dssp EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC
Confidence 99843211111 11 1222344444443 799999987654333
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.2e-05 Score=82.19 Aligned_cols=114 Identities=13% Similarity=0.026 Sum_probs=69.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+|||+|+.+..++.. + ..+|+++|.|+.|++.|++.+.... ++.++... ...+...+.....+||
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g--~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d--~~~~~~~~~~~~~~fD 291 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-G--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGS--AFEEMEKLQKKGEKFD 291 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-T--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC--HHHHHHHHHHTTCCEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-C--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECC--HHHHHHHHHhhCCCCC
Confidence 3579999999999999888873 2 4589999999999999998876432 22222221 1111111111246899
Q ss_pred EEEecccccCCCC--H----HHHHHHHHHHHhc--CCCEEEEEecCCCCc
Q 012511 169 LVIASYVLGEVPS--L----QDRITIVRQLWDL--TRDVLVLVEPGTPQG 210 (462)
Q Consensus 169 LVias~vL~el~~--~----~~r~~~i~~Lw~~--~gG~LVlVEpGtp~G 210 (462)
+|++.--...... . .....++..+.+. +||.|+++.......
T Consensus 292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 341 (396)
T 2as0_A 292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD 341 (396)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCC
Confidence 9998532211110 0 1223344555443 799999987654433
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.07 E-value=6.8e-06 Score=79.29 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=42.9
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCcee
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH 148 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~ 148 (462)
..+.+|||+|||+|..+..+++. ..+|++||.++.|++.+++.+....++.+++
T Consensus 28 ~~~~~VLEIG~G~G~lt~~La~~----~~~V~avEid~~~~~~~~~~~~~~~~v~~i~ 81 (255)
T 3tqs_A 28 QKTDTLVEIGPGRGALTDYLLTE----CDNLALVEIDRDLVAFLQKKYNQQKNITIYQ 81 (255)
T ss_dssp CTTCEEEEECCTTTTTHHHHTTT----SSEEEEEECCHHHHHHHHHHHTTCTTEEEEE
T ss_pred CCcCEEEEEcccccHHHHHHHHh----CCEEEEEECCHHHHHHHHHHHhhCCCcEEEE
Confidence 34579999999999998888763 4689999999999999999886544444443
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.06 E-value=8.4e-06 Score=80.33 Aligned_cols=75 Identities=19% Similarity=0.133 Sum_probs=50.8
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
..+.+|||+|||+|..+..+++. ..+|++||+|+.|++.+++.+... .++.++. .+.. .+ ...+||
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~----~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~-----~D~~-~~--~~~~~D 108 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPL----AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYE-----GDAI-KT--VFPKFD 108 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTT----SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC---------CC-SS--CCCCCS
T ss_pred CCcCEEEEEcCcCcHHHHHHHhc----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEE-----Cchh-hC--CcccCC
Confidence 34579999999999998887763 458999999999999999877422 2222221 1221 12 234799
Q ss_pred EEEeccccc
Q 012511 169 LVIASYVLG 177 (462)
Q Consensus 169 LVias~vL~ 177 (462)
+|+++...+
T Consensus 109 ~Vv~n~py~ 117 (299)
T 2h1r_A 109 VCTANIPYK 117 (299)
T ss_dssp EEEEECCGG
T ss_pred EEEEcCCcc
Confidence 999865443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.1e-05 Score=82.61 Aligned_cols=109 Identities=13% Similarity=0.035 Sum_probs=65.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+.+|||+|||+|+.+..++.. ...+|++||.|+.+++.|++.++..+ ++.++... ...+...+.....+|
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~---g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D--~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMG---GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDD--VFKLLRTYRDRGEKF 294 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESC--HHHHHHHHHHTTCCE
T ss_pred CCCeEEEeeccCCHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECC--HHHHHHHHHhcCCCC
Confidence 3579999999999998888763 13589999999999999998875322 22222221 111111111124589
Q ss_pred cEEEecccc--------cCCCCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 168 DLVIASYVL--------GEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 168 DLVias~vL--------~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
|+|++.--. .... .....++..+.+. +||.|++.....
T Consensus 295 D~Ii~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQLMGAC--RGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp EEEEECCSSTTTCSSSSSCCC--THHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CEEEECCCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999986311 1111 1222333333332 789988876443
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=5.7e-06 Score=81.90 Aligned_cols=99 Identities=12% Similarity=0.090 Sum_probs=54.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeC----CHHHHHHHHHhhcCCCCCCceecchhHh-hhhhccCCCCCcc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEP----SQSMQRAGQSLMQGPKDLPLIHSYNSIQ-ALNKDISKSEREH 167 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~----S~~ml~~Ak~ll~~~~~~~~i~~~~~~~-~l~~~l~~~~~~f 167 (462)
..+|||+|||||..+..+++. .+|++||. ++.+++.. ..+.. ..+.+... .. ++. .....+|
T Consensus 83 g~~VLDlGcG~G~~s~~la~~-----~~V~gvD~~~~~~~~~~~~~--~~~~~-~~~~v~~~--~~~D~~---~l~~~~f 149 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGL-----KNVREVKGLTKGGPGHEEPI--PMSTY-GWNLVRLQ--SGVDVF---FIPPERC 149 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTS-----TTEEEEEEECCCSTTSCCCC--CCCST-TGGGEEEE--CSCCTT---TSCCCCC
T ss_pred CCEEEEEcCCCCHHHHHHHhc-----CCEEEEeccccCchhHHHHH--Hhhhc-CCCCeEEE--eccccc---cCCcCCC
Confidence 379999999999998888763 46999999 56544211 01111 01112110 01 111 1134589
Q ss_pred cEEEeccccc---CCCCHH---HHHHHHHHHHhcCCCEEEEEec
Q 012511 168 DLVIASYVLG---EVPSLQ---DRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 168 DLVias~vL~---el~~~~---~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|+|++..+++ ++.+.. ..+..+.++++ |||.||+--.
T Consensus 150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~Lk-pGG~~v~kv~ 192 (305)
T 2p41_A 150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLS-NNTQFCVKVL 192 (305)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCC-TTCEEEEEES
T ss_pred CEEEECCccccCcchhhHHHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 9999977654 111111 12233444444 7998887443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.6e-06 Score=92.51 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=64.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
++.+|||+|||+|..+.+++.. ...+|++||.|+.|++.|++.++..+ ++.++... ....++...++|
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~---ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D-----~~~~l~~~~~~f 610 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLG---GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQAD-----CLAWLREANEQF 610 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESC-----HHHHHHHCCCCE
T ss_pred CCCcEEEeeechhHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecC-----HHHHHHhcCCCc
Confidence 3579999999999988887762 24579999999999999999875432 12222221 111122234689
Q ss_pred cEEEecccc---c-----CCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 168 DLVIASYVL---G-----EVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 168 DLVias~vL---~-----el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
|+||+.--- + .+........++..+.+. +||.|++.-.
T Consensus 611 D~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 611 DLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp EEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 999984311 0 011012223344444332 6999986543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-05 Score=84.10 Aligned_cols=107 Identities=16% Similarity=0.042 Sum_probs=68.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC-CCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~-~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+|||+|||||..+.++++.++. ...|+++|+|+.|++.+++.++..+- +.++... ...+.. ...++||+|
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~-~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~D--a~~l~~---~~~~~FD~I 174 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGG-KGLLLANEVDGKRVRGLLENVERWGAPLAVTQAP--PRALAE---AFGTYFHRV 174 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTT-CSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSC--HHHHHH---HHCSCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECC--HHHhhh---hccccCCEE
Confidence 4579999999999999998887763 35899999999999999998764321 2222211 111211 124689999
Q ss_pred Eec------ccccCCCCH------H-------HHHHHHHHHHhc--CCCEEEEEe
Q 012511 171 IAS------YVLGEVPSL------Q-------DRITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 171 ias------~vL~el~~~------~-------~r~~~i~~Lw~~--~gG~LVlVE 204 (462)
++. .++..-++. + ....++..+++. +||.||...
T Consensus 175 l~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT 229 (464)
T 3m6w_A 175 LLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229 (464)
T ss_dssp EEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 951 222222221 1 124566666664 799999754
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=84.74 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=68.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCC-CCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISK-SEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~-~~~~fD 168 (462)
.+.+|||+|||||..+..+++..+. ...|+++|+|+.|++.+++.++.. .++.++... .. .++. ...+||
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~-~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D-----~~-~~~~~~~~~fD 189 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNN-EGAILANEFSASRVKVLHANISRCGISNVALTHFD-----GR-VFGAAVPEMFD 189 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTT-CSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCC-----ST-THHHHSTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCC-----HH-HhhhhccccCC
Confidence 3579999999999999888887652 468999999999999999887642 232222211 11 1111 245899
Q ss_pred EEEec------ccccCCCC------HH-------HHHHHHHHHHhc--CCCEEEEEec
Q 012511 169 LVIAS------YVLGEVPS------LQ-------DRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 169 LVias------~vL~el~~------~~-------~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
+|++. .++...++ .. ....++..+++. +||.||+..-
T Consensus 190 ~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 190 AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp EEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 99972 22332221 11 122455555553 7999998654
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=3.8e-05 Score=79.48 Aligned_cols=95 Identities=12% Similarity=0.025 Sum_probs=59.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+|||+|||+|+.+..++.. ..+|++||.|+.|++.|+..+...+ .+.++.. +....+ ..+||+|
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~----~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~-----d~~~~~---~~~fD~V 357 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR----GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVA-----SDREVS---VKGFDTV 357 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEEC-----CTTTCC---CTTCSEE
T ss_pred CCCEEEEeeccchHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEC-----ChHHcC---ccCCCEE
Confidence 3479999999999999888873 4589999999999999998875321 1222211 222111 1279999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
++.--...+. ...+..+..+ .++|.+++
T Consensus 358 v~dPPr~g~~--~~~~~~l~~l--~p~givyv 385 (425)
T 2jjq_A 358 IVDPPRAGLH--PRLVKRLNRE--KPGVIVYV 385 (425)
T ss_dssp EECCCTTCSC--HHHHHHHHHH--CCSEEEEE
T ss_pred EEcCCccchH--HHHHHHHHhc--CCCcEEEE
Confidence 9864433331 2233333332 36776665
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-05 Score=81.79 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=71.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccC--CCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDIS--KSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~--~~~~~fD 168 (462)
.+.+|||+|||+|..+..+++..+. .+++++|.|+.+++.++..+...+ ++.++.. +... ++ ....+||
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~--~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~-----D~~~-~~~~~~~~~fD 317 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPE--AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQG-----DGRY-PSQWCGEQQFD 317 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTT--CEEEEEESSTTTHHHHHHHHHHTTCCCEEEEC-----CTTC-THHHHTTCCEE
T ss_pred CcCeEEEECCCchHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeC-----chhh-chhhcccCCCC
Confidence 4579999999999999988887753 689999999999999998876432 2222221 1111 11 1236899
Q ss_pred EEEe------cccccCCCCHH-------------HHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 169 LVIA------SYVLGEVPSLQ-------------DRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 169 LVia------s~vL~el~~~~-------------~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
+|++ ..+++..++.. ....++.++++. +||.||+..-..
T Consensus 318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9996 23444444321 113566666664 799999977543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=97.97 E-value=2.4e-05 Score=74.73 Aligned_cols=60 Identities=10% Similarity=0.197 Sum_probs=45.3
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL 144 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~ 144 (462)
+..+...++...+.+|||+|||+|..+..+++. ..+|++||.|+.|++.+++.+....++
T Consensus 19 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~v 78 (244)
T 1qam_A 19 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR----CNFVTAIEIDHKLCKTTENKLVDHDNF 78 (244)
T ss_dssp HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH----SSEEEEECSCHHHHHHHHHHTTTCCSE
T ss_pred HHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc----CCeEEEEECCHHHHHHHHHhhccCCCe
Confidence 344444443334579999999999999888874 258999999999999999887653333
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=97.96 E-value=2e-05 Score=82.16 Aligned_cols=107 Identities=12% Similarity=0.010 Sum_probs=67.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||||..+.++++..+. ...|+++|+|+.+++.+++.++..+ ++.++... ...+.. ...++||+
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~-~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~D--a~~l~~---~~~~~FD~ 178 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKG-KGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHA--PAELVP---HFSGFFDR 178 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTT-CSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCC--HHHHHH---HHTTCEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCC--HHHhhh---hccccCCE
Confidence 4579999999999988888876653 4689999999999999998876432 22222211 111211 12468999
Q ss_pred EEecc---cccCCC-CHHH---------------HHHHHHHHHhc--CCCEEEEEe
Q 012511 170 VIASY---VLGEVP-SLQD---------------RITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 170 Vias~---vL~el~-~~~~---------------r~~~i~~Lw~~--~gG~LVlVE 204 (462)
|++.- .+..+. +++. ...++..+++. +||.||...
T Consensus 179 Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 234 (456)
T 3m4x_A 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234 (456)
T ss_dssp EEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99732 112111 1111 12456666654 799998754
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.7e-05 Score=77.14 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=41.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCcee
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH 148 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~ 148 (462)
.. +|||+|||+|..+..+++. ..+|++||.|+.|++.+++.+.. .++.+++
T Consensus 47 ~~-~VLEIG~G~G~lt~~L~~~----~~~V~avEid~~~~~~l~~~~~~-~~v~vi~ 97 (271)
T 3fut_A 47 TG-PVFEVGPGLGALTRALLEA----GAEVTAIEKDLRLRPVLEETLSG-LPVRLVF 97 (271)
T ss_dssp CS-CEEEECCTTSHHHHHHHHT----TCCEEEEESCGGGHHHHHHHTTT-SSEEEEE
T ss_pred CC-eEEEEeCchHHHHHHHHHc----CCEEEEEECCHHHHHHHHHhcCC-CCEEEEE
Confidence 45 9999999999999988874 35899999999999999988764 3343443
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.3e-05 Score=79.17 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=54.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCC-CCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISK-SEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~-~~~~fDL 169 (462)
.+.+|||+|||+|..+.++++.++ ..+|+++|.|+.|++.|++.+...+ ++.+++... ..+...+.. ...+||.
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~--~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~--~~l~~~l~~~g~~~~D~ 101 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCP--GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY--READFLLKTLGIEKVDG 101 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG--GGHHHHHHHTTCSCEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCH--HHHHHHHHhcCCCCCCE
Confidence 457999999999999999888775 3589999999999999999876542 333443321 112111110 1247999
Q ss_pred EEecc
Q 012511 170 VIASY 174 (462)
Q Consensus 170 Vias~ 174 (462)
|++..
T Consensus 102 Vl~D~ 106 (301)
T 1m6y_A 102 ILMDL 106 (301)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 98754
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.9e-05 Score=76.41 Aligned_cols=64 Identities=19% Similarity=0.142 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 72 AVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 72 ~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
.|......++..+...+.. .+.+|||+|||+|+.+..++.. ..+|++||.|+.|++.|+..++.
T Consensus 194 ~n~~~~~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~----~~~V~gvd~~~~ai~~a~~n~~~ 257 (369)
T 3bt7_A 194 PNAAMNIQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN----FDRVLATEIAKPSVAAAQYNIAA 257 (369)
T ss_dssp SBHHHHHHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG----SSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc----CCEEEEEECCHHHHHHHHHHHHH
Confidence 3443334444444444332 3578999999999999887762 35899999999999999988753
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.1e-05 Score=74.34 Aligned_cols=55 Identities=27% Similarity=0.355 Sum_probs=42.2
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
++..+...++...+.+|||+|||+|..+..+++. + ..+|++||.|+.|++.+++.
T Consensus 19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~--~~~v~avEid~~~~~~~~~~ 73 (249)
T 3ftd_A 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-P--LKKLYVIELDREMVENLKSI 73 (249)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-C--CSEEEEECCCHHHHHHHTTS
T ss_pred HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-C--CCeEEEEECCHHHHHHHHhc
Confidence 3444444444345679999999999999888763 2 36899999999999999876
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=2.2e-05 Score=78.53 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=63.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+|||+|..+.. +. ...+|+++|.|+.+++.|++.++..+ ++.++.. +... . . .+||
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~----~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~-----D~~~-~--~-~~fD 260 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK----NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILS-----DVRE-V--D-VKGN 260 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT----TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-----CGGG-C--C-CCEE
T ss_pred CCCEEEEccCccCHHHHh-cc----CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----ChHH-h--c-CCCc
Confidence 357999999999998887 64 25689999999999999998875432 1222221 1211 1 1 6899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
+|++..-- .....+..+.++++ +||.|++.+....
T Consensus 261 ~Vi~dpP~----~~~~~l~~~~~~L~-~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 261 RVIMNLPK----FAHKFIDKALDIVE-EGGVIHYYTIGKD 295 (336)
T ss_dssp EEEECCTT----TGGGGHHHHHHHEE-EEEEEEEEEEESS
T ss_pred EEEECCcH----hHHHHHHHHHHHcC-CCCEEEEEEeecC
Confidence 99985211 11122333344443 6999999876554
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=97.76 E-value=5.2e-05 Score=78.72 Aligned_cols=124 Identities=15% Similarity=0.191 Sum_probs=74.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCC-----------CccEEEEEeCCHHHHHHHHHhhc--CCC--CCCceecchhHhhh
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPR-----------SLEKVNLVEPSQSMQRAGQSLMQ--GPK--DLPLIHSYNSIQAL 156 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~-----------~~~~v~~VD~S~~ml~~Ak~ll~--~~~--~~~~i~~~~~~~~l 156 (462)
...+|||.|||+|.++.++.+.+.. ....++|+|+++.|++.|+..+. +.. +..+.+.. .+
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD----~l 246 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCED----SL 246 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECC----TT
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCC----CC
Confidence 3469999999999998887765311 12479999999999999987653 221 22222221 11
Q ss_pred hhccCCCCCcccEEEecccccCCCCH--------------HHHHHHHHHHHhc--CCCEEEEEecCCC--CchHHHHHHH
Q 012511 157 NKDISKSEREHDLVIASYVLGEVPSL--------------QDRITIVRQLWDL--TRDVLVLVEPGTP--QGSSIISQMR 218 (462)
Q Consensus 157 ~~~l~~~~~~fDLVias~vL~el~~~--------------~~r~~~i~~Lw~~--~gG~LVlVEpGtp--~Gf~~I~~aR 218 (462)
. .+ ...+||+|+++--++..... ..-..++..+++. +||.+++|-|... .|. .-..+|
T Consensus 247 ~--~~-~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~-~~~~iR 322 (445)
T 2okc_A 247 E--KE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAG-AGETIR 322 (445)
T ss_dssp T--SC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCST-HHHHHH
T ss_pred C--Cc-ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCc-HHHHHH
Confidence 1 11 23489999998554433211 0113445555443 7999999887431 111 235678
Q ss_pred HHHHH
Q 012511 219 SHILW 223 (462)
Q Consensus 219 ~~lL~ 223 (462)
+.|++
T Consensus 323 ~~L~~ 327 (445)
T 2okc_A 323 KRLLQ 327 (445)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88774
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.74 E-value=4.3e-05 Score=74.62 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=38.0
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhh
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 138 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll 138 (462)
..+.+|||+|||+|..+..+++..+....+|++||+|+.|++.+++..
T Consensus 41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~ 88 (279)
T 3uzu_A 41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF 88 (279)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH
T ss_pred CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc
Confidence 345799999999999988888753210134999999999999998874
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=9.4e-05 Score=72.20 Aligned_cols=100 Identities=16% Similarity=0.100 Sum_probs=61.7
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
+.+|||+|||+|..+..++.. ...+|+++|.|+.+++.+++.++..+-...+... ..+.. .+. ....||.|++
T Consensus 126 g~~VlD~~aG~G~~~i~~a~~---g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~--~~D~~-~~~-~~~~~D~Vi~ 198 (278)
T 3k6r_A 126 DELVVDMFAGIGHLSLPIAVY---GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY--NMDNR-DFP-GENIADRILM 198 (278)
T ss_dssp TCEEEETTCTTTTTTHHHHHH---TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE--CSCTT-TCC-CCSCEEEEEE
T ss_pred CCEEEEecCcCcHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEE--eCcHH-Hhc-cccCCCEEEE
Confidence 479999999999988876653 2358999999999999999887643211111110 01111 122 3568999987
Q ss_pred cccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+.- +...+-+...-++++ +||.|.+-+
T Consensus 199 ~~p----~~~~~~l~~a~~~lk-~gG~ih~~~ 225 (278)
T 3k6r_A 199 GYV----VRTHEFIPKALSIAK-DGAIIHYHN 225 (278)
T ss_dssp CCC----SSGGGGHHHHHHHEE-EEEEEEEEE
T ss_pred CCC----CcHHHHHHHHHHHcC-CCCEEEEEe
Confidence 642 222222333334454 689887644
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.65 E-value=5.4e-05 Score=73.03 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=50.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCH-------HHHHHHHHhhcCC--CC-CCceecchhHhhhhhccCC
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ-------SMQRAGQSLMQGP--KD-LPLIHSYNSIQALNKDISK 162 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~-------~ml~~Ak~ll~~~--~~-~~~i~~~~~~~~l~~~l~~ 162 (462)
+.+|||+|||+|..+..++.. ..+|+++|+|+ .|++.|+..++.. .+ +.++... ...+...++.
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~----g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d--~~~~l~~~~~ 157 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASL----GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGN--AAEQMPALVK 157 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHT----TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESC--HHHHHHHHHH
T ss_pred cCeEEEeeCccCHHHHHHHHh----CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECC--HHHHHHhhhc
Confidence 469999999999998888773 35799999999 9999888765321 11 3333321 1111111110
Q ss_pred CCCcccEEEecccccC
Q 012511 163 SEREHDLVIASYVLGE 178 (462)
Q Consensus 163 ~~~~fDLVias~vL~e 178 (462)
...+||+|++.-.+.+
T Consensus 158 ~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 158 TQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHCCCSEEEECCCC--
T ss_pred cCCCccEEEECCCCCC
Confidence 0157999999766554
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0002 Score=73.27 Aligned_cols=106 Identities=9% Similarity=0.041 Sum_probs=63.2
Q ss_pred CCeEEEECCchhHHHHHHHHhCCC------------------------------------CccEEEEEeCCHHHHHHHHH
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPR------------------------------------SLEKVNLVEPSQSMQRAGQS 136 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~------------------------------------~~~~v~~VD~S~~ml~~Ak~ 136 (462)
...|||.+||+|+++..++..-.+ ...+++++|.|+.|++.|+.
T Consensus 202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~ 281 (393)
T 3k0b_A 202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ 281 (393)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence 368999999999988765543211 11469999999999999999
Q ss_pred hhcCCC--C-CCceecchhHhhhhhccCCCCCcccEEEecccccC-CCCHHHHHH---HHHHHHhc-CCCEEEEEec
Q 012511 137 LMQGPK--D-LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGE-VPSLQDRIT---IVRQLWDL-TRDVLVLVEP 205 (462)
Q Consensus 137 ll~~~~--~-~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~e-l~~~~~r~~---~i~~Lw~~-~gG~LVlVEp 205 (462)
.+...+ + +.++.. ++.. ++ ...+||+||++--.++ +.+..+... .+...++. +||.+.++-.
T Consensus 282 Na~~~gl~~~I~~~~~-----D~~~-~~-~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 282 NAVEAGLGDLITFRQL-----QVAD-FQ-TEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp HHHHTTCTTCSEEEEC-----CGGG-CC-CCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred HHHHcCCCCceEEEEC-----ChHh-CC-CCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 876432 1 222222 2221 22 2358999999832221 111122222 23333433 5888888765
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0002 Score=73.13 Aligned_cols=105 Identities=8% Similarity=0.008 Sum_probs=64.7
Q ss_pred CCeEEEECCchhHHHHHHHHhCCC------------------------------------CccEEEEEeCCHHHHHHHHH
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPR------------------------------------SLEKVNLVEPSQSMQRAGQS 136 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~------------------------------------~~~~v~~VD~S~~ml~~Ak~ 136 (462)
...|||.+||+|+++..++..-.+ ...+++++|.|+.|++.|+.
T Consensus 195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~ 274 (384)
T 3ldg_A 195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK 274 (384)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence 368999999999988765543111 01359999999999999999
Q ss_pred hhcCCCC---CCceecchhHhhhhhccCCCCCcccEEEec--ccccCCCCHHHHHHHH---HHHHhc-CCCEEEEEec
Q 012511 137 LMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLVIAS--YVLGEVPSLQDRITIV---RQLWDL-TRDVLVLVEP 205 (462)
Q Consensus 137 ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fDLVias--~vL~el~~~~~r~~~i---~~Lw~~-~gG~LVlVEp 205 (462)
++...+- +.++.. ++.. ++. ..+||+||++ |... +.+..+...+. ...++. +|+.+.|+-+
T Consensus 275 Na~~~gl~~~I~~~~~-----D~~~-l~~-~~~fD~Iv~NPPYG~r-l~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 275 NAREVGLEDVVKLKQM-----RLQD-FKT-NKINGVLISNPPYGER-LLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHHHTTCTTTEEEEEC-----CGGG-CCC-CCCSCEEEECCCCTTT-TSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHcCCCCceEEEEC-----ChHH-CCc-cCCcCEEEECCchhhc-cCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 8865431 222221 2221 222 3489999998 4432 33333333333 334443 6888888765
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00033 Score=68.73 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=54.7
Q ss_pred CCCeEEEECC------chhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCc-eecchhHhhhhhccCCCC
Q 012511 92 SPAKVLDFGA------GTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPL-IHSYNSIQALNKDISKSE 164 (462)
Q Consensus 92 ~p~rVLDvG~------G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~-i~~~~~~~~l~~~l~~~~ 164 (462)
.+.+|||+|| |||+ .. ++...+ ...+|++||+|+. + .++.+ +.. ++.. ++ ..
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs-~~-~a~~~~-~~~~V~gvDis~~--------v---~~v~~~i~g-----D~~~-~~-~~ 121 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT-AV-LRQWLP-TGTLLVDSDLNDF--------V---SDADSTLIG-----DCAT-VH-TA 121 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH-HH-HHHHSC-TTCEEEEEESSCC--------B---CSSSEEEES-----CGGG-CC-CS
T ss_pred CCCEEEEeCCCCCCCCCcHH-HH-HHHHcC-CCCEEEEEECCCC--------C---CCCEEEEEC-----cccc-CC-cc
Confidence 3469999999 6677 33 344454 2468999999987 1 23444 432 2322 22 23
Q ss_pred CcccEEEeccccc--------CCCC---HHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 165 REHDLVIASYVLG--------EVPS---LQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 165 ~~fDLVias~vL~--------el~~---~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
.+||+|+++...+ +... ....+..+.++++ +||.|++.....
T Consensus 122 ~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lk-pGG~~v~~~~~~ 174 (290)
T 2xyq_A 122 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLA-LGGSIAVKITEH 174 (290)
T ss_dssp SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEE-EEEEEEEEECSS
T ss_pred CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcC-CCcEEEEEEecc
Confidence 6899999864322 1111 1133444555554 699999866433
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.59 E-value=5.6e-05 Score=72.68 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=35.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
...+|||+|||+|..+. +.. -+ ..+|++||+++.|++.+++.+..
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~~-~~--~~~v~avEid~~~~~~a~~~~~~ 65 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PVG-ER--LDQLTVIELDRDLAARLQTHPFL 65 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HHH-TT--CSCEEEECCCHHHHHHHHTCTTT
T ss_pred CcCEEEEECCCCcHHHH-hhh-CC--CCeEEEEECCHHHHHHHHHHhcc
Confidence 44789999999998887 553 11 12399999999999999987654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.56 E-value=4.5e-05 Score=78.42 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=50.2
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC----CCCCceecchhHhhhhhccCC-CCCcc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP----KDLPLIHSYNSIQALNKDISK-SEREH 167 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~----~~~~~i~~~~~~~~l~~~l~~-~~~~f 167 (462)
+.+|||+|||+|..+.+++.. ..+|++||.|+.|++.|+.+++.. .++.+++.. ....++. ...+|
T Consensus 94 g~~VLDLgcG~G~~al~LA~~----g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~D-----a~~~L~~~~~~~f 164 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSK----ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGD-----FKEYLPLIKTFHP 164 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTT----CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESC-----GGGSHHHHHHHCC
T ss_pred CCEEEEeCCCchHHHHHHHhc----CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECc-----HHHhhhhccCCCc
Confidence 579999999999998887763 458999999999999999987632 223333321 1111111 12479
Q ss_pred cEEEec
Q 012511 168 DLVIAS 173 (462)
Q Consensus 168 DLVias 173 (462)
|+|++.
T Consensus 165 DvV~lD 170 (410)
T 3ll7_A 165 DYIYVD 170 (410)
T ss_dssp SEEEEC
T ss_pred eEEEEC
Confidence 999984
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0004 Score=68.74 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=41.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~ 141 (462)
.+.+|||+|||+|..+..+++..+ ...+|+++|+++.+++.+++.++..
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~-~~g~V~a~D~~~~~l~~~~~n~~r~ 150 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLK-NQGKIFAFDLDAKRLASMATLLARA 150 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCChhHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 347999999999998888887654 2468999999999999999988653
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00022 Score=72.81 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=63.4
Q ss_pred CCeEEEECCchhHHHHHHHHh----------------CCC--------------------CccEEEEEeCCHHHHHHHHH
Q 012511 93 PAKVLDFGAGTGSAFWALREV----------------WPR--------------------SLEKVNLVEPSQSMQRAGQS 136 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~----------------~~~--------------------~~~~v~~VD~S~~ml~~Ak~ 136 (462)
..+|||.|||+|+++..++.. |+. ...+|+++|+|+.|++.|+.
T Consensus 196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~ 275 (385)
T 3ldu_A 196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE 275 (385)
T ss_dssp TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence 468999999999988776543 111 11479999999999999999
Q ss_pred hhcCCC---CCCceecchhHhhhhhccCCCCCcccEEEecccccCCCC-HHHHHHH---HHHHHhc-CCCEEEEEec
Q 012511 137 LMQGPK---DLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPS-LQDRITI---VRQLWDL-TRDVLVLVEP 205 (462)
Q Consensus 137 ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~-~~~r~~~---i~~Lw~~-~gG~LVlVEp 205 (462)
.+...+ .+.+... ++.. ++ ...+||+||++--..+--. ..+...+ +...++. +|+.+.++-+
T Consensus 276 Na~~~gl~~~i~~~~~-----D~~~-l~-~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 276 NAEIAGVDEYIEFNVG-----DATQ-FK-SEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp HHHHHTCGGGEEEEEC-----CGGG-CC-CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred HHHHcCCCCceEEEEC-----Chhh-cC-cCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 876432 1222221 2222 22 2358999999644332211 1222222 3333433 5788887765
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00023 Score=72.46 Aligned_cols=46 Identities=24% Similarity=0.071 Sum_probs=39.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+.+|||+|||+|..+..++...+ ..+|+++|.++.+++.++++++.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~--~~~V~avDi~~~av~~a~~N~~~ 93 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETP--AEEVWLNDISEDAYELMKRNVML 93 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSS--CSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHH
Confidence 57999999999999888877655 24799999999999999988754
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00087 Score=73.81 Aligned_cols=127 Identities=11% Similarity=0.061 Sum_probs=73.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCC-CccEEEEEeCCHHHHHHH--HHhhcCC---CCCC--ceecchhHhhhhhccCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPR-SLEKVNLVEPSQSMQRAG--QSLMQGP---KDLP--LIHSYNSIQALNKDISKS 163 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~-~~~~v~~VD~S~~ml~~A--k~ll~~~---~~~~--~i~~~~~~~~l~~~l~~~ 163 (462)
.+.+|||.|||+|+++.+++..++. ....++|+|+++.+++.| +..+... .... .+... ++.......
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~d----D~L~~~~~~ 396 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGE----DVCSLNPED 396 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECC----CGGGCCGGG
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEec----chhcccccc
Confidence 3579999999999999998887652 135799999999999999 4433220 1111 11111 111100123
Q ss_pred CCcccEEEec--ccccCCCCHHHH-------------------------HHHHHHHHhc--CCCEEEEEecCCCC--chH
Q 012511 164 EREHDLVIAS--YVLGEVPSLQDR-------------------------ITIVRQLWDL--TRDVLVLVEPGTPQ--GSS 212 (462)
Q Consensus 164 ~~~fDLVias--~vL~el~~~~~r-------------------------~~~i~~Lw~~--~gG~LVlVEpGtp~--Gf~ 212 (462)
..+||+||++ |....- ..... ..++....+. +||.+++|=|..-. ...
T Consensus 397 ~~kFDVVIgNPPYg~~~~-~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~ 475 (878)
T 3s1s_A 397 FANVSVVVMNPPYVSGVT-DPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGN 475 (878)
T ss_dssp GTTEEEEEECCBCCSSCC-CHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSH
T ss_pred cCCCCEEEECCCcccccc-chhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCCh
Confidence 4689999996 433211 11111 1123333332 69999998775432 112
Q ss_pred HHHHHHHHHHH
Q 012511 213 IISQMRSHILW 223 (462)
Q Consensus 213 ~I~~aR~~lL~ 223 (462)
.-..+|+.|++
T Consensus 476 ~~kkLRk~LLe 486 (878)
T 3s1s_A 476 ESKAFREFLVG 486 (878)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 24567999874
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.38 E-value=1.4e-05 Score=76.17 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=39.4
Q ss_pred HHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 85 RRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 85 ~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
...++...+.+|||+|||+|..+..+++. ..+++++|+|+.|++.+++.+.
T Consensus 22 ~~~~~~~~~~~VLDiG~G~G~~~~~l~~~----~~~v~~id~~~~~~~~a~~~~~ 72 (245)
T 1yub_A 22 IKQLNLKETDTVYEIGTGKGHLTTKLAKI----SKQVTSIELDSHLFNLSSEKLK 72 (245)
T ss_dssp HHHCCCCSSEEEEECSCCCSSCSHHHHHH----SSEEEESSSSCSSSSSSSCTTT
T ss_pred HHhcCCCCCCEEEEEeCCCCHHHHHHHHh----CCeEEEEECCHHHHHHHHHHhc
Confidence 33343334579999999999988887774 2589999999999988876654
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00036 Score=74.37 Aligned_cols=126 Identities=12% Similarity=0.104 Sum_probs=73.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCC----------------ccEEEEEeCCHHHHHHHHHhhc--CCCC-----CCcee
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRS----------------LEKVNLVEPSQSMQRAGQSLMQ--GPKD-----LPLIH 148 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~----------------~~~v~~VD~S~~ml~~Ak~ll~--~~~~-----~~~i~ 148 (462)
...+|||.+||+|.++.++.+.+... ...++|+|+++.|.++|+..+. +... ..+.+
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 34699999999999988877654211 1379999999999999987653 2221 11222
Q ss_pred cchhHhhhhhccCCCCCcccEEEecccccCCCC-----------HHHHHHHHHHHHhc--CCCEEEEEecCCC--CchHH
Q 012511 149 SYNSIQALNKDISKSEREHDLVIASYVLGEVPS-----------LQDRITIVRQLWDL--TRDVLVLVEPGTP--QGSSI 213 (462)
Q Consensus 149 ~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~-----------~~~r~~~i~~Lw~~--~gG~LVlVEpGtp--~Gf~~ 213 (462)
.. + +... .....+||+||++--.+.... ...-..++..+++. +||.+++|-|... .|. .
T Consensus 249 gD-t---L~~~-~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~-~ 322 (541)
T 2ar0_A 249 GN-T---LGSD-GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG-K 322 (541)
T ss_dssp SC-T---TSHH-HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCT-H
T ss_pred CC-C---cccc-cccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCc-H
Confidence 21 1 1100 112458999999743332211 11112344444443 6999998876431 121 2
Q ss_pred HHHHHHHHHH
Q 012511 214 ISQMRSHILW 223 (462)
Q Consensus 214 I~~aR~~lL~ 223 (462)
-..+|+.|++
T Consensus 323 ~~~iR~~L~~ 332 (541)
T 2ar0_A 323 GTDIRRDLMD 332 (541)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 2467998874
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0013 Score=66.86 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=54.1
Q ss_pred HHHHHHHHHHCCCC-----CCCeEEEECCchhHHHHHH--------HHhC-----CCCccEEEEEeCCHHHHH-HHHHhh
Q 012511 78 YRVLCEVRRRLPGF-----SPAKVLDFGAGTGSAFWAL--------REVW-----PRSLEKVNLVEPSQSMQR-AGQSLM 138 (462)
Q Consensus 78 ~~vL~eL~~rlp~~-----~p~rVLDvG~G~G~~~~al--------~~~~-----~~~~~~v~~VD~S~~ml~-~Ak~ll 138 (462)
..++.+....+... ++.+|+|+|||+|..+..+ .+.+ +....+|..-|.-...-. +.+.+-
T Consensus 33 ~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~ 112 (374)
T 3b5i_A 33 LHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP 112 (374)
T ss_dssp HHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred HHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence 34555444444322 2579999999999776554 2222 112467888887665433 333332
Q ss_pred cCCCC------------CC-ceecchhHhhhhhccCCCCCcccEEEecccccCCCC
Q 012511 139 QGPKD------------LP-LIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPS 181 (462)
Q Consensus 139 ~~~~~------------~~-~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~ 181 (462)
..... -+ ++... .-..+.+ .++.+++|+|+++++||++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~f~~gv-pgSFy~r--lfP~~S~d~v~Ss~aLHWls~ 165 (374)
T 3b5i_A 113 PLVSNTCMEECLAADGNRSYFVAGV-PGSFYRR--LFPARTIDFFHSAFSLHWLSQ 165 (374)
T ss_dssp CBCCCC--CCC---CCCBCSEEEEE-ESCTTSC--CSCTTCEEEEEEESCTTBCSS
T ss_pred hhhhhcchhhhccccCCCceEEEec-Chhhhcc--cCCCcceEEEEecceeeeecc
Confidence 11000 01 11000 0001111 135789999999999999973
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00065 Score=69.41 Aligned_cols=101 Identities=15% Similarity=-0.016 Sum_probs=61.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--C--CCceecchhHhhhhhccC-CCCCcc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D--LPLIHSYNSIQALNKDIS-KSEREH 167 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~--~~~i~~~~~~~~l~~~l~-~~~~~f 167 (462)
+.+|||++||+|..+..++...+ ...+|+++|.|+.+++.+++.++..+ + +.++.. +....+. ....+|
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~-ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~-----Da~~~l~~~~~~~f 126 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETS-CVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGM-----EANFFLRKEWGFGF 126 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCS-CEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS-----CHHHHHHSCCSSCE
T ss_pred CCEEEECCCcccHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeC-----CHHHHHHHhhCCCC
Confidence 46999999999998877666432 23689999999999999999886432 1 222221 1111111 123579
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|+|++.- .......+....++++ +||.|++.-
T Consensus 127 D~V~lDP----~g~~~~~l~~a~~~Lk-~gGll~~t~ 158 (392)
T 3axs_A 127 DYVDLDP----FGTPVPFIESVALSMK-RGGILSLTA 158 (392)
T ss_dssp EEEEECC----SSCCHHHHHHHHHHEE-EEEEEEEEE
T ss_pred cEEEECC----CcCHHHHHHHHHHHhC-CCCEEEEEe
Confidence 9999764 1122233333333333 588666544
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0011 Score=65.12 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=67.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC----CCCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP----KDLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~----~~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.|++||=+|.|.|..+..+.... ...++++||+++.+++.+++-+... -+-|.+... ..+-...+....++|
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~--~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~--~~Dg~~~l~~~~~~y 158 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHK--NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLV--IDDGVNFVNQTSQTF 158 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCT--TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEE--ESCTTTTTSCSSCCE
T ss_pred CCCeEEEECCCchHHHHHHHHcC--CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEE--echHHHHHhhccccC
Confidence 57999999999999998888754 3679999999999999999876321 112332211 111112233356789
Q ss_pred cEEEecccc-----cCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 168 DLVIASYVL-----GEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 168 DLVias~vL-----~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
|+||+-..= ..|- ..+-.+.+++.++ +||++|.-
T Consensus 159 DvIi~D~~dp~~~~~~L~-t~eFy~~~~~~L~-p~Gv~v~q 197 (294)
T 3o4f_A 159 DVIISDCTDPIGPGESLF-TSAFYEGCKRCLN-PGGIFVAQ 197 (294)
T ss_dssp EEEEESCCCCCCTTCCSS-CCHHHHHHHHTEE-EEEEEEEE
T ss_pred CEEEEeCCCcCCCchhhc-CHHHHHHHHHHhC-CCCEEEEe
Confidence 999964321 1121 1234456666665 68988863
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0024 Score=70.08 Aligned_cols=111 Identities=12% Similarity=0.088 Sum_probs=62.8
Q ss_pred CCeEEEECCchhHHHHHHHHh-----------------CCC-----------------------CccEEEEEeCCHHHHH
Q 012511 93 PAKVLDFGAGTGSAFWALREV-----------------WPR-----------------------SLEKVNLVEPSQSMQR 132 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~-----------------~~~-----------------------~~~~v~~VD~S~~ml~ 132 (462)
...|||.+||+|+++..++.. |+. ....++|+|+++.|++
T Consensus 191 ~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~ 270 (703)
T 3v97_A 191 GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQ 270 (703)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHH
T ss_pred CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHH
Confidence 368999999999998765543 110 0147999999999999
Q ss_pred HHHHhhcCCCCCCceecchhHhhhhhcc-CCCCCcccEEEecccccC-CCCHH---HHHHHHHHHHhc--CCCEEEEEec
Q 012511 133 AGQSLMQGPKDLPLIHSYNSIQALNKDI-SKSEREHDLVIASYVLGE-VPSLQ---DRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 133 ~Ak~ll~~~~~~~~i~~~~~~~~l~~~l-~~~~~~fDLVias~vL~e-l~~~~---~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
.|+.++...+-...+.. ...+..... +...++||+||++--.++ +.+.. .....+..+++. +||.+.++-+
T Consensus 271 ~A~~N~~~agv~~~i~~--~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 271 RARTNARLAGIGELITF--EVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSA 348 (703)
T ss_dssp HHHHHHHHTTCGGGEEE--EECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHHcCCCCceEE--EECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 99998865331111110 011222111 222238999999822222 11122 222333444442 7888888754
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.001 Score=64.17 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=34.0
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
.+|||+|||+|..++.++.. ..+|++||.|+.+..+++..++
T Consensus 90 ~~VLDl~~G~G~dal~lA~~----g~~V~~vE~~~~~~~l~~~~l~ 131 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV----GCRVRMLERNPVVAALLDDGLA 131 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH----TCCEEEEECCHHHHHHHHHHHH
T ss_pred CEEEEcCCcCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHH
Confidence 69999999999988877764 2379999999998776665543
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0022 Score=59.53 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=34.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~ 141 (462)
+.+||++||| .+.+|.+. .+ ..+|+.||.++++.+.|+..++..
T Consensus 31 a~~VLEiGtG-ySTl~lA~--~~--~g~VvtvE~d~~~~~~ar~~l~~~ 74 (202)
T 3cvo_A 31 AEVILEYGSG-GSTVVAAE--LP--GKHVTSVESDRAWARMMKAWLAAN 74 (202)
T ss_dssp CSEEEEESCS-HHHHHHHT--ST--TCEEEEEESCHHHHHHHHHHHHHS
T ss_pred CCEEEEECch-HHHHHHHH--cC--CCEEEEEeCCHHHHHHHHHHHHHc
Confidence 5799999998 45555543 22 368999999999999999988653
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0019 Score=63.14 Aligned_cols=45 Identities=22% Similarity=0.093 Sum_probs=38.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
....|||++||+|+.+.++... ..+++++|.++.|++.|++.++.
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~----g~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARW----GRRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHc----CCeEEEEeCCHHHHHHHHHHHHH
Confidence 4579999999999999988762 45899999999999999987754
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0012 Score=70.39 Aligned_cols=126 Identities=11% Similarity=0.156 Sum_probs=72.9
Q ss_pred CCeEEEECCchhHHHHHHHHhCCC-------------CccEEEEEeCCHHHHHHHHHhhc--CCC-CCCceecchhHhhh
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPR-------------SLEKVNLVEPSQSMQRAGQSLMQ--GPK-DLPLIHSYNSIQAL 156 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~-------------~~~~v~~VD~S~~ml~~Ak~ll~--~~~-~~~~i~~~~~~~~l 156 (462)
+.+|||.+||+|.++.++.+.+.. ....++|+|+++.+..+|+..+. +.. ++...... .+
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gD----tL 320 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNAD----SF 320 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCC----TT
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccc----hh
Confidence 359999999999998877654321 03579999999999999987652 221 11112111 11
Q ss_pred hhccCCCCCcccEEEec--ccccC-----------------------CCCH-HHHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 157 NKDISKSEREHDLVIAS--YVLGE-----------------------VPSL-QDRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 157 ~~~l~~~~~~fDLVias--~vL~e-----------------------l~~~-~~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
.. ......+||+||++ |.... ++.. ..-..++..+++. +||.+++|-|..-
T Consensus 321 ~~-~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~ 399 (544)
T 3khk_A 321 LD-DQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGS 399 (544)
T ss_dssp TS-CSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHH
T ss_pred cC-cccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchh
Confidence 11 11234689999996 33211 2111 1112355555554 6999988865321
Q ss_pred --CchHHHHHHHHHHHH
Q 012511 209 --QGSSIISQMRSHILW 223 (462)
Q Consensus 209 --~Gf~~I~~aR~~lL~ 223 (462)
.+...-..+|+.|++
T Consensus 400 L~~~~~~~~~iRk~Lle 416 (544)
T 3khk_A 400 MSSNTNNEGEIRKTLVE 416 (544)
T ss_dssp HHCCGGGHHHHHHHHHH
T ss_pred hhcCcchHHHHHHHHHh
Confidence 111234567999884
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0015 Score=70.50 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=70.1
Q ss_pred cCHHHHHHHHHh-cCchhHHHHHHHH-HHHHHHC----CCCCCCeEEEECCchhHHHH---HHHHhCCCCccEEEEEeCC
Q 012511 57 YRDDETIAYVAS-RMPAVYSACYRVL-CEVRRRL----PGFSPAKVLDFGAGTGSAFW---ALREVWPRSLEKVNLVEPS 127 (462)
Q Consensus 57 y~~~e~~AYla~-r~p~~Ya~~~~vL-~eL~~rl----p~~~p~rVLDvG~G~G~~~~---al~~~~~~~~~~v~~VD~S 127 (462)
.+.++...|-.. .=|--|..-.+++ ..|..+. +.+....|||+|||+|.++. .+.+.-. ...+|++||.|
T Consensus 316 ~dnL~s~tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~-~~vkVyAVEkn 394 (637)
T 4gqb_A 316 MDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQAD-RRIKLYAVEKN 394 (637)
T ss_dssp TSCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTT-CEEEEEEEESC
T ss_pred hhhhhhhhhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcC-CCcEEEEEECC
Confidence 344566666533 3344444333332 2333343 23455689999999997633 2222221 23479999999
Q ss_pred HHHHHHHHHhhcCCC--C-CCceecchhHhhhhhccCCCCCcccEEEe----cccccCCCCHHHHHHHHHHHHhcCCCE
Q 012511 128 QSMQRAGQSLMQGPK--D-LPLIHSYNSIQALNKDISKSEREHDLVIA----SYVLGEVPSLQDRITIVRQLWDLTRDV 199 (462)
Q Consensus 128 ~~ml~~Ak~ll~~~~--~-~~~i~~~~~~~~l~~~l~~~~~~fDLVia----s~vL~el~~~~~r~~~i~~Lw~~~gG~ 199 (462)
+ |...|+++.+... + +.+++. +..+ +. .+++.|+||+ ++.++|.. + +.+...+++++ +||.
T Consensus 395 p-~A~~a~~~v~~N~~~dkVtVI~g-----d~ee-v~-LPEKVDIIVSEwMG~fLl~E~m-l-evL~Ardr~LK-PgGi 462 (637)
T 4gqb_A 395 P-NAVVTLENWQFEEWGSQVTVVSS-----DMRE-WV-APEKADIIVSELLGSFADNELS-P-ECLDGAQHFLK-DDGV 462 (637)
T ss_dssp H-HHHHHHHHHHHHTTGGGEEEEES-----CTTT-CC-CSSCEEEEECCCCBTTBGGGCH-H-HHHHHHGGGEE-EEEE
T ss_pred H-HHHHHHHHHHhccCCCeEEEEeC-----ccee-cc-CCcccCEEEEEcCcccccccCC-H-HHHHHHHHhcC-CCcE
Confidence 7 5556666654322 1 223332 1221 21 2468999987 46667763 3 44445555554 5664
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.008 Score=61.09 Aligned_cols=86 Identities=16% Similarity=0.069 Sum_probs=48.0
Q ss_pred CCeEEEECCchhHHHHHHHHh--------CC-------CCccEEEEEeCC-----------HHHHHHHHHhhcCCCCCCc
Q 012511 93 PAKVLDFGAGTGSAFWALREV--------WP-------RSLEKVNLVEPS-----------QSMQRAGQSLMQGPKDLPL 146 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~--------~~-------~~~~~v~~VD~S-----------~~ml~~Ak~ll~~~~~~~~ 146 (462)
+.+|+|+|||+|..+..+... +. ....+|+.-|.- +.+.+..+..........+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 579999999999776654432 11 123577888877 5555443222111011111
Q ss_pred eecchhHhhhhhccCCCCCcccEEEecccccCCCC
Q 012511 147 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPS 181 (462)
Q Consensus 147 i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~ 181 (462)
+... .-..+.+ .++.+++|+|+++++||++.+
T Consensus 133 ~~gv-pgSFy~r--lfp~~S~d~v~Ss~aLHWls~ 164 (384)
T 2efj_A 133 IGAM-PGSFYSR--LFPEESMHFLHSCYCLHWLSQ 164 (384)
T ss_dssp EEEC-CSCTTSC--CSCTTCEEEEEEESCTTBCSS
T ss_pred EEec-chhhhhc--cCCCCceEEEEecceeeecCC
Confidence 1110 0011221 145789999999999999864
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0018 Score=62.61 Aligned_cols=111 Identities=14% Similarity=0.063 Sum_probs=58.3
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKD 159 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~ 159 (462)
|.++..+.......+|||+|||||..+..++... ....++++|.+..+... ...... ...++... ... +.
T Consensus 63 L~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~--~~~~v~g~dVGvDl~~~---pi~~~~~g~~ii~~~---~~~-dv 133 (277)
T 3evf_A 63 LRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQK--EVSGVKGFTLGRDGHEK---PMNVQSLGWNIITFK---DKT-DI 133 (277)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTST--TEEEEEEECCCCTTCCC---CCCCCBTTGGGEEEE---CSC-CT
T ss_pred HHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhc--CCCcceeEEEeccCccc---ccccCcCCCCeEEEe---ccc-ee
Confidence 3444444222233699999999999888666532 24578888888543100 000000 00111100 000 01
Q ss_pred cCCCCCcccEEEecccccCCCCH---HHH----HHHHHHHHhcCC-CEEEE
Q 012511 160 ISKSEREHDLVIASYVLGEVPSL---QDR----ITIVRQLWDLTR-DVLVL 202 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~---~~r----~~~i~~Lw~~~g-G~LVl 202 (462)
......+||+|++..+.+ -... ..+ +.+..++++ +| |.+|+
T Consensus 134 ~~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~Lk-pG~G~FV~ 182 (277)
T 3evf_A 134 HRLEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLA-CGVDNFCV 182 (277)
T ss_dssp TTSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred hhcCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhC-CCCCeEEE
Confidence 123456899999988777 3321 112 234455554 68 99888
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0093 Score=60.17 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=71.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++++|||+||+||..++.+.+ ...+|++||..+ |-. .+. ..+++..+.. +.. .......++|+|+
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~----rg~~V~aVD~~~-l~~---~l~-~~~~V~~~~~-----d~~-~~~~~~~~~D~vv 275 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVK----RNMWVYSVDNGP-MAQ---SLM-DTGQVTWLRE-----DGF-KFRPTRSNISWMV 275 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHH----TTCEEEEECSSC-CCH---HHH-TTTCEEEECS-----CTT-TCCCCSSCEEEEE
T ss_pred CCCEEEEeCcCCCHHHHHHHH----CCCEEEEEEhhh-cCh---hhc-cCCCeEEEeC-----ccc-cccCCCCCcCEEE
Confidence 358999999999999999887 346899999864 221 121 2222222211 111 1222356899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHHHHHH
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHILW 223 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~~lL~ 223 (462)
|-.+. .+.....++..++.. .++.++.+.......++.+....+.+-.
T Consensus 276 sDm~~----~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~ 325 (375)
T 4auk_A 276 CDMVE----KPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQA 325 (375)
T ss_dssp ECCSS----CHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHH
T ss_pred EcCCC----ChHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHH
Confidence 86543 344455556555543 3578888888777788888777777653
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.011 Score=62.91 Aligned_cols=128 Identities=15% Similarity=0.103 Sum_probs=75.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCC-CccEEEEEeCCHHHHHHHHHhhc--CCC--CCCceecchhHhhhhhccC-CCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPR-SLEKVNLVEPSQSMQRAGQSLMQ--GPK--DLPLIHSYNSIQALNKDIS-KSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~-~~~~v~~VD~S~~ml~~Ak~ll~--~~~--~~~~i~~~~~~~~l~~~l~-~~~~ 165 (462)
...+|||.+||+|.++.++.+.+.. ....++|+|+++.+..+|+..+. +.. +..+.+.. .+....+ ....
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gD----tL~~d~p~~~~~ 296 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNAD----TLDEDWPTQEPT 296 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESC----TTTSCSCCSSCC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecc----eecccccccccc
Confidence 3569999999999999888877642 24689999999999999987542 221 11112111 1111111 2356
Q ss_pred cccEEEec--ccccC-----------------CCCHH-HHHHHHHHHHhc---CCCEEEEEecCCCC-chHHHHHHHHHH
Q 012511 166 EHDLVIAS--YVLGE-----------------VPSLQ-DRITIVRQLWDL---TRDVLVLVEPGTPQ-GSSIISQMRSHI 221 (462)
Q Consensus 166 ~fDLVias--~vL~e-----------------l~~~~-~r~~~i~~Lw~~---~gG~LVlVEpGtp~-Gf~~I~~aR~~l 221 (462)
+||+||++ |.... ++... .-..++..+++. +||.+++|-|.... +...-..+|+.|
T Consensus 297 ~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~L 376 (542)
T 3lkd_A 297 NFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKAL 376 (542)
T ss_dssp CBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHH
T ss_pred cccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHH
Confidence 89999986 22111 11000 012344444442 68999888775421 111346679998
Q ss_pred HH
Q 012511 222 LW 223 (462)
Q Consensus 222 L~ 223 (462)
++
T Consensus 377 le 378 (542)
T 3lkd_A 377 LE 378 (542)
T ss_dssp HH
T ss_pred Hh
Confidence 85
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0018 Score=62.76 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=59.4
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l 160 (462)
|.||.++..-....+|||+|||||..+-.+.... ....++++|.+..|...+.. .......++.... -.++ .
T Consensus 79 L~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~--gv~sV~GvdvG~d~~~~pi~--~~~~g~~ii~~~~-~~dv---~ 150 (282)
T 3gcz_A 79 LRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLK--NVKKVMAFTLGVQGHEKPIM--RTTLGWNLIRFKD-KTDV---F 150 (282)
T ss_dssp HHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTST--TEEEEEEECCCCTTSCCCCC--CCBTTGGGEEEEC-SCCG---G
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCCeeeeEEeccCccccccc--cccCCCceEEeeC-Ccch---h
Confidence 4455555422234699999999999888666533 24678899998764221100 0000000110000 0011 1
Q ss_pred CCCCCcccEEEecccccCCCCH---HHH----HHHHHHHHhcCC--CEEEE
Q 012511 161 SKSEREHDLVIASYVLGEVPSL---QDR----ITIVRQLWDLTR--DVLVL 202 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~~~---~~r----~~~i~~Lw~~~g--G~LVl 202 (462)
.....++|+|+|--+.+ -... ..+ +.+...+++ +| |.+|+
T Consensus 151 ~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk-~g~~G~Fv~ 199 (282)
T 3gcz_A 151 NMEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQ-EGNYTEFCI 199 (282)
T ss_dssp GSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHH-HHCCCEEEE
T ss_pred hcCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcC-CCCCCcEEE
Confidence 12356899999987777 3321 112 233344554 46 88887
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.002 Score=62.02 Aligned_cols=110 Identities=18% Similarity=0.152 Sum_probs=59.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhC-------CCC---ccEEEEEeCCH---HHHH-----------HHHHhhcCCCC-CC-
Q 012511 92 SPAKVLDFGAGTGSAFWALREVW-------PRS---LEKVNLVEPSQ---SMQR-----------AGQSLMQGPKD-LP- 145 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~-------~~~---~~~v~~VD~S~---~ml~-----------~Ak~ll~~~~~-~~- 145 (462)
++.+|||+|+|+|..+.++.+.| |+. ..+|+++|..+ +++. .|+.+++.... ++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 45799999999998887766654 321 35899999876 4444 56666554211 00
Q ss_pred ---------ceecchhHhhhhhccCCCC----CcccEEEec-ccccCCCC--HHHHHHHHHHHHhcCCCEEEE
Q 012511 146 ---------LIHSYNSIQALNKDISKSE----REHDLVIAS-YVLGEVPS--LQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 146 ---------~i~~~~~~~~l~~~l~~~~----~~fDLVias-~vL~el~~--~~~r~~~i~~Lw~~~gG~LVl 202 (462)
.+.......+..+.++... ..||+|+.- +.-...+. ..+.+..+.++++ +||+|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~-pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLAR-PGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEE-EEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcC-CCcEEEE
Confidence 0000000112222232221 379999873 33322221 2334445555554 6999885
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0063 Score=59.13 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=51.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC-CCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~-~~~~~fDLV 170 (462)
....+||.+||.|.-+.++++. ..+|+++|.++.+++.|++ +.. .++.+++.++. .+...+. ....++|.|
T Consensus 22 ~gg~~VD~T~G~GGHS~~il~~----~g~VigiD~Dp~Ai~~A~~-L~~-~rv~lv~~~f~--~l~~~L~~~g~~~vDgI 93 (285)
T 1wg8_A 22 PGGVYVDATLGGAGHARGILER----GGRVIGLDQDPEAVARAKG-LHL-PGLTVVQGNFR--HLKRHLAALGVERVDGI 93 (285)
T ss_dssp TTCEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHH-TCC-TTEEEEESCGG--GHHHHHHHTTCSCEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHC----CCEEEEEeCCHHHHHHHHh-hcc-CCEEEEECCcc--hHHHHHHHcCCCCcCEE
Confidence 3479999999999999988874 3589999999999999999 765 44445554322 2221111 122468888
Q ss_pred Eec
Q 012511 171 IAS 173 (462)
Q Consensus 171 ias 173 (462)
++.
T Consensus 94 L~D 96 (285)
T 1wg8_A 94 LAD 96 (285)
T ss_dssp EEE
T ss_pred EeC
Confidence 864
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0028 Score=68.82 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=55.1
Q ss_pred CCeEEEECCchhHHHH----HHHHh---CCC----CccEEEEEeCCHHHHHHHHHhhc-CCCC-CCceecchhHhhhhhc
Q 012511 93 PAKVLDFGAGTGSAFW----ALREV---WPR----SLEKVNLVEPSQSMQRAGQSLMQ-GPKD-LPLIHSYNSIQALNKD 159 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~----al~~~---~~~----~~~~v~~VD~S~~ml~~Ak~ll~-~~~~-~~~i~~~~~~~~l~~~ 159 (462)
...|||+|||+|.++. |.... +.. ...+|++||.|+.++...+.... +..+ +.+++.. ..++.
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd--~eev~-- 485 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESD--MRSLP-- 485 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESC--GGGHH--
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCc--hhhcc--
Confidence 4689999999998743 22111 000 13499999999976655444433 3333 4444432 11221
Q ss_pred cC---CCCCcccEEEecc----cccCCCCHHHHHHHHHHHHhcCCCEE
Q 012511 160 IS---KSEREHDLVIASY----VLGEVPSLQDRITIVRQLWDLTRDVL 200 (462)
Q Consensus 160 l~---~~~~~fDLVias~----vL~el~~~~~r~~~i~~Lw~~~gG~L 200 (462)
+| ...++.|+||+=. .++|+. .+.+..++++++ ++|.+
T Consensus 486 lp~~~~~~ekVDIIVSElmGsfl~nEL~--pe~Ld~v~r~Lk-p~Gi~ 530 (745)
T 3ua3_A 486 GIAKDRGFEQPDIIVSELLGSFGDNELS--PECLDGVTGFLK-PTTIS 530 (745)
T ss_dssp HHHHHTTCCCCSEEEECCCBTTBGGGSH--HHHHHTTGGGSC-TTCEE
T ss_pred cccccCCCCcccEEEEeccccccchhcc--HHHHHHHHHhCC-CCcEE
Confidence 11 1246899999743 345552 334454555554 57743
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0021 Score=64.85 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=51.6
Q ss_pred CCCeEEEECCchhHHHHH--------HHHh---C---CCCccEEEEEeCCHHHHHHHHHhhcCCCC--CC-ceecchhHh
Q 012511 92 SPAKVLDFGAGTGSAFWA--------LREV---W---PRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LP-LIHSYNSIQ 154 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~a--------l~~~---~---~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~--~~-~i~~~~~~~ 154 (462)
++.+|+|+||++|..+.. +.+. . +....+|+..|....+-...-..+..... -+ ++... .-.
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gv-pgS 129 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGV-PGS 129 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEE-ESC
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEec-chh
Confidence 457899999999965442 2221 1 12346889999888877665555543110 11 11110 000
Q ss_pred hhhhccCCCCCcccEEEecccccCCCC
Q 012511 155 ALNKDISKSEREHDLVIASYVLGEVPS 181 (462)
Q Consensus 155 ~l~~~l~~~~~~fDLVias~vL~el~~ 181 (462)
.+.+ .++.+++|+|+++++||++..
T Consensus 130 Fy~r--lfp~~S~d~v~Ss~aLHWls~ 154 (359)
T 1m6e_X 130 FYGR--LFPRNTLHFIHSSYSLMWLSQ 154 (359)
T ss_dssp SSSC--CSCTTCBSCEEEESCTTBCSS
T ss_pred hhhc--cCCCCceEEEEehhhhhhccc
Confidence 1111 245789999999999999864
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0018 Score=56.89 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=55.0
Q ss_pred CCeEEEECCchh-HHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 93 PAKVLDFGAGTG-SAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G-~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
+.+|||+|||+| ..+..+++. ...+|+++|+|+..++ ++.. ++-......-..||||-
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~---~g~~V~atDInp~Av~-------------~v~d-----DiF~P~~~~Y~~~DLIY 94 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKH---SKVDLVLTDIKPSHGG-------------IVRD-----DITSPRMEIYRGAALIY 94 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHH---SCCEEEEECSSCSSTT-------------EECC-----CSSSCCHHHHTTEEEEE
T ss_pred CCcEEEEccCCChHHHHHHHHh---CCCeEEEEECCccccc-------------eEEc-----cCCCCcccccCCcCEEE
Confidence 479999999999 577777653 2458999999998765 1111 11000000113799997
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchH
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~ 212 (462)
+-+---|| ...+..|.++.+.-|+| +|.|++
T Consensus 95 sirPP~El------~~~i~~lA~~v~adliI----~pL~~E 125 (153)
T 2k4m_A 95 SIRPPAEI------HSSLMRVADAVGARLII----KPLTGE 125 (153)
T ss_dssp EESCCTTT------HHHHHHHHHHHTCEEEE----ECBTTB
T ss_pred EcCCCHHH------HHHHHHHHHHcCCCEEE----EcCCCC
Confidence 76644444 33555666666778887 555554
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0022 Score=79.45 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=52.1
Q ss_pred CCeEEEECCchhHHHHHHHHhCCC---CccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~---~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
..+||++|+|+|..+..+.+.+.. ...+|+..|+|+.+.+.|++.++... + .... + +.....++....||+
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d-i--~~~~--~-d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH-V--TQGQ--W-DPANPAPGSLGKADL 1314 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT-E--EEEC--C-CSSCCCC-----CCE
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc-c--cccc--c-cccccccCCCCceeE
Confidence 369999999999766655555432 14589999999887766665443210 0 0000 0 000000113457999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
||++++||-.++....+..++++++ |||+|++.|.
T Consensus 1315 via~~vl~~t~~~~~~l~~~~~lL~-p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1315 LVCNCALATLGDPAVAVGNMAATLK-EGGFLLLHTL 1349 (2512)
T ss_dssp EEEECC---------------------CCEEEEEEC
T ss_pred EEEcccccccccHHHHHHHHHHhcC-CCcEEEEEec
Confidence 9999999987777777777888886 7999999986
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.069 Score=53.12 Aligned_cols=111 Identities=11% Similarity=0.158 Sum_probs=73.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-----------------------CCCCceec
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-----------------------KDLPLIHS 149 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-----------------------~~~~~i~~ 149 (462)
...|+.+|||..+..|.+....+ ...++=||. +++++.-+.++... .+...+..
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~--~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFP--HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCT--TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CcEEEEeCCCCccHHHHhcCcCC--CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 47899999999999998876443 357788888 77777766665432 11111211
Q ss_pred c----hhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc-CCCEEEEEecCCC
Q 012511 150 Y----NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGTP 208 (462)
Q Consensus 150 ~----~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~-~gG~LVlVEpGtp 208 (462)
. .+...+-.... ......++|+--+|.+|+ +++...+++.+.+. ++|.+|+.|.-.|
T Consensus 175 DL~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~-~~~~~~ll~~ia~~~~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 175 DLNDITETTRLLDVCT-KREIPTIVISECLLCYMH-NNESQLLINTIMSKFSHGLWISYDPIGG 236 (334)
T ss_dssp CTTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSC-HHHHHHHHHHHHHHCSSEEEEEEEECCC
T ss_pred CCCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCC-HHHHHHHHHHHHhhCCCcEEEEEeccCC
Confidence 1 11111111222 334678999999999996 77778888888765 7889998997655
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.015 Score=56.81 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=28.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHH
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSM 130 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~m 130 (462)
+..+|||+||+||..+..+.+..+ ...|.++|.+..+
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~g--v~sV~Gvdlg~~~ 117 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQKE--VMSVKGYTLGIEG 117 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTSTT--EEEEEEECCCCTT
T ss_pred CCCEEEEcCCCCCHHHHHHHHhcC--CceeeeEEecccc
Confidence 347999999999999998886432 4578899987543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.034 Score=53.11 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=38.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
....|||..||+|+.+.++... ..+++++|.++.+.+.|++.++.
T Consensus 212 ~~~~vlD~f~GsGtt~~~a~~~----gr~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 212 PNDLVLDCFMGSGTTAIVAKKL----GRNFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp TTCEEEESSCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHc----CCeEEEEeCCHHHHHHHHHHHHh
Confidence 3579999999999999888773 46899999999999999988764
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.064 Score=54.26 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=39.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
.|++||=+|.|.|..+..+.+ ++ ..++++||+++.+++.+++-+..
T Consensus 205 ~pkrVLIIGgGdG~~~revlk-h~--~~~V~~VEIDp~VVe~ar~yfp~ 250 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVK-LK--PKMVTMVEIDQMVIDGCKKYMRK 250 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHT-TC--CSEEEEEESCHHHHHHHHHHCCC
T ss_pred CCCeEEEECCCcHHHHHHHHh-cC--CceeEEEccCHHHHHHHHhhchh
Confidence 578999999999999988876 34 36899999999999999987643
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.093 Score=55.50 Aligned_cols=126 Identities=18% Similarity=0.178 Sum_probs=71.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCC-----------ccEEEEEeCCHHHHHHHHHhh--cCCCCCCceecchhHhhhhh
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRS-----------LEKVNLVEPSQSMQRAGQSLM--QGPKDLPLIHSYNSIQALNK 158 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~-----------~~~v~~VD~S~~ml~~Ak~ll--~~~~~~~~i~~~~~~~~l~~ 158 (462)
.+.+|+|-.||+|.++.++.+.+... ...++|+|.++.+..+|+..+ .+... +.+....+ +..
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~-~~I~~~dt---L~~ 292 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-PRIDPENS---LRF 292 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC-CEEECSCT---TCS
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc-cccccccc---ccC
Confidence 34699999999999998877654221 146999999999999988643 33221 11211111 111
Q ss_pred cc--CCCCCcccEEEecccccCC-------------CCHHHHHHHHHHHH---hc------CCCEEEEEecCC---CCch
Q 012511 159 DI--SKSEREHDLVIASYVLGEV-------------PSLQDRITIVRQLW---DL------TRDVLVLVEPGT---PQGS 211 (462)
Q Consensus 159 ~l--~~~~~~fDLVias~vL~el-------------~~~~~r~~~i~~Lw---~~------~gG~LVlVEpGt---p~Gf 211 (462)
.. .....+||+||++-=.+.- +....-..++..++ +. +||.+.+|=|.. ..|.
T Consensus 293 ~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~ 372 (530)
T 3ufb_A 293 PLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGI 372 (530)
T ss_dssp CGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTH
T ss_pred chhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccch
Confidence 00 1124579999997443211 11111122333332 21 589998887743 2232
Q ss_pred HHHHHHHHHHHH
Q 012511 212 SIISQMRSHILW 223 (462)
Q Consensus 212 ~~I~~aR~~lL~ 223 (462)
+ ..+|+.|++
T Consensus 373 ~--~~iRk~Lle 382 (530)
T 3ufb_A 373 S--ARIKEELLK 382 (530)
T ss_dssp H--HHHHHHHHH
T ss_pred H--HHHHHHHhh
Confidence 2 457999985
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.17 Score=49.16 Aligned_cols=104 Identities=8% Similarity=0.130 Sum_probs=58.8
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCC---CccEEEEEeCCHH--------------------------HHHHHHHhhcCC
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPR---SLEKVNLVEPSQS--------------------------MQRAGQSLMQGP 141 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~---~~~~v~~VD~S~~--------------------------ml~~Ak~ll~~~ 141 (462)
..|..||++|+..|..++.++...+. ...+++++|..+. +++.+++.++..
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 35789999999999777666554321 2467999996421 355666666543
Q ss_pred C----CCCceecchhHhhhhhccCC-CCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 142 K----DLPLIHSYNSIQALNKDISK-SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 142 ~----~~~~i~~~~~~~~l~~~l~~-~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
+ ++.++... ..+.++. ...+||+|..--- ..+.-...+..++.+ +||++|+ +.
T Consensus 185 gl~~~~I~li~Gd-----a~etL~~~~~~~~d~vfIDaD-----~y~~~~~~Le~~~p~L~pGGiIv~-DD 244 (282)
T 2wk1_A 185 DLLDEQVRFLPGW-----FKDTLPTAPIDTLAVLRMDGD-----LYESTWDTLTNLYPKVSVGGYVIV-DD 244 (282)
T ss_dssp TCCSTTEEEEESC-----HHHHSTTCCCCCEEEEEECCC-----SHHHHHHHHHHHGGGEEEEEEEEE-SS
T ss_pred CCCcCceEEEEeC-----HHHHHhhCCCCCEEEEEEcCC-----ccccHHHHHHHHHhhcCCCEEEEE-cC
Confidence 2 22233322 2223332 2468999886531 122234556666655 5665554 44
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.45 Score=46.66 Aligned_cols=112 Identities=14% Similarity=0.138 Sum_probs=72.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-----CCCceecch--hH-hhhhhccCCCC
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-----DLPLIHSYN--SI-QALNKDISKSE 164 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-----~~~~i~~~~--~~-~~l~~~l~~~~ 164 (462)
+..|+++|||-=|..+.+. |+. ...|+-|| -+.+++..+.++.+.. +..++.... .+ ..+... ....
T Consensus 103 ~~QvV~LGaGlDTra~Rl~--~~~-~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~-g~d~ 177 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLD--WPT-GTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSA-GFDP 177 (310)
T ss_dssp CCEEEEETCTTCCHHHHSC--CCT-TCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHT-TCCT
T ss_pred CCeEEEeCCCCCchhhhcc--CCC-CcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhc-cCCC
Confidence 4689999999877766654 442 46889999 5999999888886321 111222110 11 111110 0122
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhc-CCCEEEEEecCCCCc
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGTPQG 210 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~-~gG~LVlVEpGtp~G 210 (462)
...-++++--+|++|+ +++...+++.+.+. +.|..|++|..++.+
T Consensus 178 ~~Pt~~i~Egvl~Yl~-~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~ 223 (310)
T 2uyo_A 178 SARTAWLAEGLLMYLP-ATAQDGLFTEIGGLSAVGSRIAVETSPLHG 223 (310)
T ss_dssp TSCEEEEECSCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEECCCTTC
T ss_pred CCCEEEEEechHhhCC-HHHHHHHHHHHHHhCCCCeEEEEEecCCCC
Confidence 3456889999999997 66778888888875 467777889877753
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.21 Score=49.71 Aligned_cols=56 Identities=11% Similarity=0.012 Sum_probs=43.7
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHH
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS 136 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ 136 (462)
.|.|+...+....+..++|..||.|.-+.++++..+ ...+|+++|.++.+++.|+.
T Consensus 45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg-~~GrVig~D~Dp~Al~~A~r 100 (347)
T 3tka_A 45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLG-EEGRLLAIDRDPQAIAVAKT 100 (347)
T ss_dssp TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCC-TTCEEEEEESCHHHHHHHTT
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHh
Confidence 456666555433457999999999999999888765 24689999999999999964
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=92.44 E-value=0.25 Score=49.52 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=41.8
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceec
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS 149 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~ 149 (462)
...|||+|.|+|+.+.++++... ..++++||+...++...+.++ ...++.+++.
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~--~~~vvavE~D~~l~~~L~~~~-~~~~l~ii~~ 112 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYC--PRQYSLLEKRSSLYKFLNAKF-EGSPLQILKR 112 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHC--CSEEEEECCCHHHHHHHHHHT-TTSSCEEECS
T ss_pred CCEEEEECCCCCHHHHHHHhhCC--CCEEEEEecCHHHHHHHHHhc-cCCCEEEEEC
Confidence 47899999999999999987421 357999999999999888876 3344544443
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=91.41 E-value=0.95 Score=45.80 Aligned_cols=85 Identities=18% Similarity=0.316 Sum_probs=53.0
Q ss_pred HHCCCCCCCeEEEECCchhHHHHHHHHhCCC-----CccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc
Q 012511 86 RRLPGFSPAKVLDFGAGTGSAFWALREVWPR-----SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 86 ~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~-----~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l 160 (462)
..++...+..|+|+|+|.|+++.-+...+.. ...+|+.||.|+.+.+.=++.+.... + +. +...+. .+
T Consensus 74 ~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~--~-v~---W~~~l~-~l 146 (387)
T 1zkd_A 74 KAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIR--N-IH---WHDSFE-DV 146 (387)
T ss_dssp HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCS--S-EE---EESSGG-GS
T ss_pred HHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCC--C-eE---EeCChh-hc
Confidence 3344334568999999999988766654421 13489999999999887666665432 1 11 111121 13
Q ss_pred CCCCCcccEEEecccccCCC
Q 012511 161 SKSEREHDLVIASYVLGEVP 180 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~ 180 (462)
+. ..=+||++-+|.-||
T Consensus 147 p~---~~~~viANE~fDAlP 163 (387)
T 1zkd_A 147 PE---GPAVILANEYFDVLP 163 (387)
T ss_dssp CC---SSEEEEEESSGGGSC
T ss_pred CC---CCeEEEeccccccCc
Confidence 21 234778888887777
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=90.37 E-value=0.29 Score=46.31 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=33.5
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHH
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQS 129 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ 129 (462)
|.++.++..-....+|||+||+||..+-.++..- ...+|.++|....
T Consensus 67 L~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~--g~~~V~avdvG~~ 113 (267)
T 3p8z_A 67 LQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLK--KVTEVRGYTKGGP 113 (267)
T ss_dssp HHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTST--TEEEEEEECCCST
T ss_pred HHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhc--CCCEEEEEecCCC
Confidence 5566666532344799999999999888666543 3568999997653
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=89.70 E-value=0.28 Score=47.82 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=32.7
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHH
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQS 129 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ 129 (462)
|.++.++..-....+|||+||+||..+-.++..- ....|.++|....
T Consensus 83 L~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~--gv~~V~avdvG~~ 129 (321)
T 3lkz_A 83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQK--RVQEVRGYTKGGP 129 (321)
T ss_dssp HHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCT--TEEEEEEECCCST
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhc--CCCEEEEEEcCCC
Confidence 4555555333344699999999999887555533 3568999997654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=88.79 E-value=1 Score=44.27 Aligned_cols=47 Identities=13% Similarity=-0.021 Sum_probs=40.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
.+..|||.=||+||.+.++... ..+++++|+++.+.+.++..++...
T Consensus 252 ~~~~VlDpF~GsGtt~~aa~~~----gr~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 252 PDDLVVDIFGGSNTTGLVAERE----SRKWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred CCCEEEECCCCCCHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 4579999999999999888763 4689999999999999999887643
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=87.71 E-value=1.5 Score=42.47 Aligned_cols=125 Identities=11% Similarity=0.116 Sum_probs=72.4
Q ss_pred cCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCcee
Q 012511 69 RMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH 148 (462)
Q Consensus 69 r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~ 148 (462)
.+|...+..+.++..+ .+..+||+=+|+|.....+.. ...+++.||.++...+.-+++++......++.
T Consensus 75 ~~p~~l~~yf~~l~~~-------n~~~~LDlfaGSGaLgiEaLS----~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~ 143 (283)
T 2oo3_A 75 NLPSLFLEYISVIKQI-------NLNSTLSYYPGSPYFAINQLR----SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNH 143 (283)
T ss_dssp GSCGGGHHHHHHHHHH-------SSSSSCCEEECHHHHHHHHSC----TTSEEEEECCSHHHHHHHTTSCCTTSCEEEEC
T ss_pred CCcHHHHHHHHHHHHh-------cCCCceeEeCCcHHHHHHHcC----CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEe
Confidence 3566555555555542 346799999999988876654 24799999999999888777775432222222
Q ss_pred cchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHH-HHHHHhcCCCEEEEEecC
Q 012511 149 SYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITI-VRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 149 ~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~-i~~Lw~~~gG~LVlVEpG 206 (462)
. +....+....+ ...+||+|++-=-...-.......+. .+..++-++|.++|==|-
T Consensus 144 ~-D~~~~L~~l~~-~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi 200 (283)
T 2oo3_A 144 T-DGVSKLNALLP-PPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPV 200 (283)
T ss_dssp S-CHHHHHHHHCS-CTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred C-cHHHHHHHhcC-CCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEec
Confidence 2 11122322222 33579999984322211112333333 333444478988886553
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=86.13 E-value=0.58 Score=46.93 Aligned_cols=46 Identities=22% Similarity=0.124 Sum_probs=36.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
.+.+|||+.||||.=+.++++... ...++++|.|+.-++..+++++
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~--~~~l~A~D~~~~R~~~l~~~l~ 193 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGC--CRNLAANDLSPSRIARLQKILH 193 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTC--EEEEEEECSCHHHHHHHHHHHH
T ss_pred CCCEEEEecCCccHHHHHHHHhcC--CCcEEEEcCCHHHHHHHHHHHH
Confidence 346999999999987777777543 4579999999998887777665
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=84.10 E-value=0.58 Score=44.67 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCC-CeEEEECCchhHHHHHHHHh
Q 012511 81 LCEVRRRLPGFSP-AKVLDFGAGTGSAFWALREV 113 (462)
Q Consensus 81 L~eL~~rlp~~~p-~rVLDvG~G~G~~~~al~~~ 113 (462)
|.||.++. -++| .+|||+||+||..+..+++.
T Consensus 62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~ 94 (269)
T 2px2_A 62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATM 94 (269)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTS
T ss_pred HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhh
Confidence 56777775 5555 69999999999988777763
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=83.72 E-value=2.9 Score=41.16 Aligned_cols=74 Identities=19% Similarity=0.147 Sum_probs=49.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
..+|||+-||.|.+..++... ....+.++|.++..++..+..+.... .. ++..-.+..-..+|+|+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a---G~~~v~~~e~d~~a~~t~~~N~~~~~-----~~-----Di~~~~~~~~~~~D~l~~ 77 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC---GAECVYSNEWDKYAQEVYEMNFGEKP-----EG-----DITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT---TCEEEEEECCCHHHHHHHHHHHSCCC-----BS-----CGGGSCGGGSCCCSEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHC---CCeEEEEEeCCHHHHHHHHHHcCCCC-----cC-----CHHHcCHhhCCCCCEEEE
Confidence 479999999999998888763 35678899999999998888775432 11 111101111235899998
Q ss_pred cccccCC
Q 012511 173 SYVLGEV 179 (462)
Q Consensus 173 s~vL~el 179 (462)
+.-...+
T Consensus 78 gpPCQ~f 84 (327)
T 2c7p_A 78 GFPCQAF 84 (327)
T ss_dssp ECCCTTT
T ss_pred CCCCCCc
Confidence 7544333
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=83.70 E-value=1.7 Score=44.21 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=37.9
Q ss_pred CCCeEEEECCchhHHHHHHH-HhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 92 SPAKVLDFGAGTGSAFWALR-EVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~-~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+...|+|+||+.|..+..++ ...+ ...+|+++|+++...+..+..+..
T Consensus 226 ~~~~viDvGAn~G~~s~~~a~~~~~-~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 226 DSEKMVDCGASIGESLAGLIGVTKG-KFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHHTS-CCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCcCHHHHHHHHHhcC-CCCEEEEEcCCHHHHHHHHHHHHh
Confidence 34799999999998887665 4443 246899999999999888877654
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=81.83 E-value=2 Score=42.20 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=37.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCH---HHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ---SMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~---~ml~~Ak~ll~~~~ 142 (462)
....|||.=||+||.+.++... ..+++++|+++ .+.+.+++.++...
T Consensus 242 ~~~~vlDpF~GsGtt~~aa~~~----~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 242 PGSTVLDFFAGSGVTARVAIQE----GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp TTCEEEETTCTTCHHHHHHHHH----TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCEEEecCCCCCHHHHHHHHc----CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 3579999999999999888874 46899999999 99999998886543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 462 | ||||
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 0.003 |
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 36.9 bits (84), Expect = 0.003
Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 12/124 (9%)
Query: 83 EVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142
+V +P + LD G G G L V + + + + +
Sbjct: 21 DVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYD----VTAWDKNPASMANLERIKAAEG 76
Query: 143 DLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRD--VL 200
L + L D +D ++++ V+ + + Q ++ + T+
Sbjct: 77 LDNLQTDLVDLNTLTFDGE-----YDFILSTVVMMFLEA-QTIPGLIANMQRCTKPGGYN 130
Query: 201 VLVE 204
++V
Sbjct: 131 LIVA 134
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 462 | |||
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.56 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.51 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.49 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.41 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.4 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.38 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.35 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.34 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.34 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.33 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.32 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.31 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.3 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.28 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.26 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.25 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.23 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.21 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.2 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.16 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.12 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.1 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.08 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.06 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.06 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.02 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.0 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.97 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.95 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.95 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.94 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.93 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.91 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.85 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.84 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.84 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 98.8 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.8 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.77 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.75 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.74 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.63 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.61 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.57 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.56 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.53 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.48 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.48 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.47 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.41 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.41 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.4 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.39 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.38 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.33 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.31 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.24 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.21 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.09 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.04 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.03 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.98 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 97.97 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.94 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.93 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.9 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.9 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.76 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.72 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.7 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.69 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 97.68 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.66 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.54 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.4 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.31 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.25 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.24 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.24 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.22 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.2 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.0 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 96.99 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.96 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 96.95 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 96.88 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.81 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.74 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.64 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.5 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.49 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.25 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 95.48 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.61 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 94.57 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 94.19 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 93.67 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 92.89 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 92.72 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 92.09 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.61 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 90.9 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 89.49 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 89.22 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 87.76 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 87.72 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 86.55 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 86.13 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 85.49 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 84.95 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 82.42 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 80.9 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 80.77 |
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.56 E-value=1.7e-14 Score=134.36 Aligned_cols=147 Identities=18% Similarity=0.235 Sum_probs=102.4
Q ss_pred cCHHHHHHHH--HhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHH
Q 012511 57 YRDDETIAYV--ASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAG 134 (462)
Q Consensus 57 y~~~e~~AYl--a~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~A 134 (462)
+++.-|..|- ..+.-+.|..+.+.+..+.++.. ....+|||+|||+|..+..+++.......+|+|||+|+.|++.|
T Consensus 3 ~~~~~a~~fdd~i~~~iP~Y~~~~~~i~~~~~~~~-~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A 81 (225)
T d1im8a_ 3 FDENVAEVFPDMIQRSVPGYSNIITAIGMLAERFV-TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERC 81 (225)
T ss_dssp CCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHC-CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHH
T ss_pred CCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHH
Confidence 3444555553 33333578888887777766542 13469999999999999998886654467999999999999999
Q ss_pred HHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCc
Q 012511 135 QSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 210 (462)
Q Consensus 135 k~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~G 210 (462)
++.+........++.. ..+. .+.....+|+|+++++|++++ .+++..+++++.+. |||.|++.|+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~--~~d~---~~~~~~~~d~i~~~~~l~~~~-~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~ 153 (225)
T d1im8a_ 82 RQHIAAYHSEIPVEIL--CNDI---RHVEIKNASMVILNFTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSEKFRFED 153 (225)
T ss_dssp HHHHHTSCCSSCEEEE--CSCT---TTCCCCSEEEEEEESCGGGSC-GGGHHHHHHHHHHHEEEEEEEEEEEECCCSS
T ss_pred HHHhHhhcccchhhhc--cchh---hccccccceeeEEeeeccccC-hhhHHHHHHHHHHhCCCCceeeccccccccc
Confidence 9988765433222211 0111 223456889999999999995 44555566666554 799999999876554
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.51 E-value=2.3e-14 Score=133.07 Aligned_cols=113 Identities=13% Similarity=0.255 Sum_probs=86.2
Q ss_pred HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCC
Q 012511 87 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
..+--+..+|||+|||+|..+..+++. ..+|++||+|+.|++.|+..+.... ++.++.. +.. .++...
T Consensus 10 ~~~l~~~~rVLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~-----d~~-~l~~~~ 79 (231)
T d1vl5a_ 10 IAALKGNEEVLDVATGGGHVANAFAPF----VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQG-----DAE-QMPFTD 79 (231)
T ss_dssp HHTCCSCCEEEEETCTTCHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC-----CC--CCCSCT
T ss_pred hcCCCCcCEEEEecccCcHHHHHHHHh----CCEEEEEECCHHHHhhhhhccccccccccccccc-----ccc-cccccc
Confidence 333334589999999999998887764 3589999999999999998875432 3333322 122 345567
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
++||+|++.++|++++++...+..+.++++ |||+|+|+++..|..
T Consensus 80 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~ 124 (231)
T d1vl5a_ 80 ERFHIVTCRIAAHHFPNPASFVSEAYRVLK-KGGQLLLVDNSAPEN 124 (231)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEBCSS
T ss_pred cccccccccccccccCCHHHHHHHHHHhcC-CCcEEEEEeCCCCCC
Confidence 899999999999999988887777777776 799999999887764
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.49 E-value=5.1e-14 Score=131.73 Aligned_cols=108 Identities=17% Similarity=0.331 Sum_probs=84.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..+++. ..+|++||+|+.|++.|++.+... .++.++.. +.. .++.++++||+
T Consensus 16 ~~~rILDiGcGtG~~~~~la~~----~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~fD~ 85 (234)
T d1xxla_ 16 AEHRVLDIGAGAGHTALAFSPY----VQECIGVDATKEMVEVASSFAQEKGVENVRFQQG-----TAE-SLPFPDDSFDI 85 (234)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEEC-----BTT-BCCSCTTCEEE
T ss_pred CCCEEEEeCCcCcHHHHHHHHh----CCeEEEEeCChhhhhhhhhhhccccccccccccc-----ccc-cccccccccce
Confidence 3579999999999999888773 358999999999999999887542 23333322 222 35566789999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
|+|.++|++++++...+..+.++++ |||++++.+...+..
T Consensus 86 v~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~~~~~~~~~~~~ 125 (234)
T d1xxla_ 86 ITCRYAAHHFSDVRKAVREVARVLK-QDGRFLLVDHYAPED 125 (234)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECBCSS
T ss_pred eeeeceeecccCHHHHHHHHHHeeC-CCcEEEEEEcCCCCC
Confidence 9999999999988887777888876 699999999887653
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.41 E-value=8.8e-13 Score=121.18 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=76.1
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
..+|||+|||+|..+..+++. ..+|+|+|+|+.|++.|++++.... ....+.. +.. .++...++||+|+
T Consensus 38 ~~~ILDiGcG~G~~~~~la~~----~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~-----d~~-~l~~~~~~fD~I~ 107 (226)
T d1ve3a1 38 RGKVLDLACGVGGFSFLLEDY----GFEVVGVDISEDMIRKAREYAKSRESNVEFIVG-----DAR-KLSFEDKTFDYVI 107 (226)
T ss_dssp CCEEEEETCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEEC-----CTT-SCCSCTTCEEEEE
T ss_pred CCEEEEECCCcchhhhhHhhh----hcccccccccccchhhhhhhhcccccccccccc-----ccc-cccccCcCceEEE
Confidence 469999999999999888872 4589999999999999998875432 2222211 121 3455678999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
+.++|++++ ..++..+++++.+. |||.|||..+.
T Consensus 108 ~~~~l~~~~-~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 108 FIDSIVHFE-PLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EESCGGGCC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EecchhhCC-hhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 999999996 44555565555553 79999987653
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=5.3e-13 Score=128.05 Aligned_cols=131 Identities=16% Similarity=0.188 Sum_probs=88.4
Q ss_pred HHHHHHHCCCCCC-CeEEEECCchhHHHHHHHH----hCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecc---hh
Q 012511 81 LCEVRRRLPGFSP-AKVLDFGAGTGSAFWALRE----VWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSY---NS 152 (462)
Q Consensus 81 L~eL~~rlp~~~p-~rVLDvG~G~G~~~~al~~----~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~---~~ 152 (462)
+.++..++...++ .+|||+|||+|..+..++. .++.....+++||+|+.|++.|++.+....+.+.+... ..
T Consensus 28 l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 107 (280)
T d1jqea_ 28 LPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKET 107 (280)
T ss_dssp HHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSC
T ss_pred HHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhh
Confidence 3333334433333 4899999999988665544 34444567899999999999999988765544433211 01
Q ss_pred Hhhhh--hccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchH
Q 012511 153 IQALN--KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 153 ~~~l~--~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~ 212 (462)
...+. ...+...++||+|++.++|++++++...+..+.++++ |||.|+|+.+.....+.
T Consensus 108 ~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~i~~~~~~~~~~ 168 (280)
T d1jqea_ 108 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLG-TNAKMLIIVVSGSSGWD 168 (280)
T ss_dssp HHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEECTTSHHH
T ss_pred hhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCC-CCCEEEEEEecCcchHH
Confidence 11111 1123456899999999999999988776666666665 69999999886655553
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.38 E-value=7.7e-13 Score=127.19 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=87.1
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhh
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQAL 156 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l 156 (462)
++.+|....+..++.+|||||||+|..+..+++..+ .+|++||+|+.|++.|++.....+ ++.++.. +.
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~-----d~ 126 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG---VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG-----SF 126 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEEC-----CT
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCC---cEEEEEeccchhhhhhhccccccccccccccccc-----cc
Confidence 445555554444568999999999998888877543 479999999999999998875422 2223322 12
Q ss_pred hhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 157 NKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 157 ~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
. .++.+.++||+|++..+|+|+++....+..+.++++ |||.|++.++..
T Consensus 127 ~-~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~ 175 (282)
T d2o57a1 127 L-EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK-PRGVMAITDPMK 175 (282)
T ss_dssp T-SCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEE
T ss_pred c-cccccccccchhhccchhhhccCHHHHHHHHHHhcC-CCcEEEEEEeec
Confidence 2 345567899999999999999988776777777776 699999987643
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.35 E-value=2.9e-12 Score=121.74 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=81.1
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 161 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~ 161 (462)
..+.+.++.....+|||+|||+|..+..++... ...|++||+|+.|++.|++.+.+.....++.. ++. .++
T Consensus 83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~-----d~~-~~~ 153 (254)
T d1xtpa_ 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKL---YATTDLLEPVKHMLEEAKRELAGMPVGKFILA-----SME-TAT 153 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH---CSEEEEEESCHHHHHHHHHHTTTSSEEEEEES-----CGG-GCC
T ss_pred HHHHhhCCCCCCCeEEEecccCChhhHHHHhhc---CceEEEEcCCHHHHHhhhccccccccceeEEc-----ccc-ccc
Confidence 344445565567899999999998887655432 24799999999999999988765433222221 222 234
Q ss_pred CCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 162 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
...++||+|++..+|+|++ ..+...+++++.+. +||.|+|.|+-
T Consensus 154 ~~~~~fD~I~~~~vl~hl~-d~d~~~~l~~~~~~LkpgG~iii~e~~ 199 (254)
T d1xtpa_ 154 LPPNTYDLIVIQWTAIYLT-DADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp CCSSCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred cCCCccceEEeeccccccc-hhhhHHHHHHHHHhcCCCcEEEEEecC
Confidence 4567999999999999997 44455555555443 79999998864
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.34 E-value=3.4e-12 Score=119.67 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecc
Q 012511 72 AVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSY 150 (462)
Q Consensus 72 ~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~ 150 (462)
..|..-...+.++.++....++.+|||+|||+|..+..+++. ..+|+|||+|+.|++.|++.+...+ ++.++..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~----~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~- 95 (251)
T d1wzna1 21 ERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER----GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQG- 95 (251)
T ss_dssp HTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEES-
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc----ceEEEEEeeccccccccccccccccccchheeh-
Confidence 344444556666666666556789999999999998888873 3589999999999999999876432 3333322
Q ss_pred hhHhhhhhccCCCCCcccEEEec-ccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 151 NSIQALNKDISKSEREHDLVIAS-YVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 151 ~~~~~l~~~l~~~~~~fDLVias-~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
++. .++. .++||+|++. .+++++. ..++..+++++.+. |||+||+--+
T Consensus 96 ----d~~-~l~~-~~~fD~I~~~~~~~~~~~-~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 96 ----DVL-EIAF-KNEFDAVTMFFSTIMYFD-EEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp ----CGG-GCCC-CSCEEEEEECSSGGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----hhh-hccc-ccccchHhhhhhhhhcCC-hHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 222 2443 3589999997 5777774 66666777777664 7999987443
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=1.7e-12 Score=120.81 Aligned_cols=99 Identities=24% Similarity=0.316 Sum_probs=75.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|..+..+++. ..+|+|||+|+.|++.|++..... .+.. +.. .++.++++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~l~~a~~~~~~~----~~~~-----~~~-~l~~~~~~fD~ii 107 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQER----GFEVVLVDPSKEMLEVAREKGVKN----VVEA-----KAE-DLPFPSGAFEAVL 107 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT----TCEEEEEESCHHHHHHHHHHTCSC----EEEC-----CTT-SCCSCTTCEEEEE
T ss_pred CCCEEEEECCCCchhccccccc----ceEEEEeecccccccccccccccc----cccc-----ccc-cccccccccccee
Confidence 4679999999999999988863 458999999999999999864321 1211 121 3556678999999
Q ss_pred ec-ccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 172 AS-YVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 172 as-~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
+. .+++|+++....+.-+.++++ +||.+|+..+
T Consensus 108 ~~~~~~~~~~d~~~~l~~i~r~Lk-~gG~~ii~~~ 141 (246)
T d2avna1 108 ALGDVLSYVENKDKAFSEIRRVLV-PDGLLIATVD 141 (246)
T ss_dssp ECSSHHHHCSCHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred eecchhhhhhhHHHHHHHHHhhcC-cCcEEEEEEC
Confidence 75 689999988876666667775 6999998664
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.33 E-value=1.1e-12 Score=126.34 Aligned_cols=107 Identities=15% Similarity=0.241 Sum_probs=81.6
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+|.+|||+|||+|..+..+++.++. ..+|++||+|+.|++.|++.+...+ ++.++. .++. .++. .++||+
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~-----~d~~-~~~~-~~~fD~ 97 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPE-GSKYTGIDSGETLLAEARELFRLLPYDSEFLE-----GDAT-EIEL-NDKYDI 97 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCT-TCEEEEEECCHHHHHHHHHHHHSSSSEEEEEE-----SCTT-TCCC-SSCEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCC-CCEEEEEecchhHhhhhhcccccccccccccc-----cccc-cccc-cCCceE
Confidence 36789999999999999888887763 4689999999999999999886543 222221 1222 2333 457999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
|+++++|++++++...+.-+.++++ |||.|+++||.
T Consensus 98 v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~lii~~~~ 133 (281)
T d2gh1a1 98 AICHAFLLHMTTPETMLQKMIHSVK-KGGKIICFEPH 133 (281)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTEE-EEEEEEEEECC
T ss_pred EEEehhhhcCCCHHHHHHHHHHHcC-cCcEEEEEECC
Confidence 9999999999988776666666665 69999999974
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=1.5e-12 Score=122.50 Aligned_cols=107 Identities=11% Similarity=0.105 Sum_probs=80.2
Q ss_pred CCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCC
Q 012511 89 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 89 p~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
+...+.+|||||||+|..+..+++..+ .++++||+|+.|++.|++.....+- +.++.. +... + ..++
T Consensus 30 ~l~pg~~VLDiGCG~G~~~~~la~~~~---~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~-----d~~~-~-~~~~ 99 (245)
T d1nkva_ 30 RMKPGTRILDLGSGSGEMLCTWARDHG---ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN-----DAAG-Y-VANE 99 (245)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHTC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-----CCTT-C-CCSS
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHhcC---CEEEEEecccchhhHHHHHHHHhhccccchhhhh-----HHhh-c-cccC
Confidence 333457999999999998888877553 4899999999999999988754431 222221 2221 2 2467
Q ss_pred cccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 166 EHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 166 ~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+||+|++..+++++++....+..+.++++ |||.+++.+++
T Consensus 100 ~fD~v~~~~~~~~~~d~~~~l~~~~r~Lk-PGG~l~i~~~~ 139 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGFAGAEELLAQSLK-PGGIMLIGEPY 139 (245)
T ss_dssp CEEEEEEESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEEEE
T ss_pred ceeEEEEEehhhccCCHHHHHHHHHHHcC-cCcEEEEEecc
Confidence 89999999999999988776777777765 79999998764
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.31 E-value=4.8e-12 Score=118.78 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecc
Q 012511 72 AVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSY 150 (462)
Q Consensus 72 ~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~ 150 (462)
..|.....-+.++.... ...+.+|||+|||+|..+..+++. ..+|+|||.|+.|++.|++.+.... ++.++..
T Consensus 18 ~~y~~~~~~~~~~~~~~-~~~~~~vLDiGCG~G~~~~~l~~~----g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~- 91 (246)
T d1y8ca_ 18 VDYKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQ- 91 (246)
T ss_dssp CCHHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGG----SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECC-
T ss_pred CCHHHHHHHHHHHHHHh-CCCCCeEEEEeCcCCHHHHHHHHh----CCccEeeccchhhhhhccccccccCccceeecc-
Confidence 34655444444444432 335689999999999988888763 3589999999999999998765432 3333322
Q ss_pred hhHhhhhhccCCCCCcccEEEec-ccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 151 NSIQALNKDISKSEREHDLVIAS-YVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 151 ~~~~~l~~~l~~~~~~fDLVias-~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
++. .++ ..++||+|+|. ++++++.+.+++..+++++.+. |||.||+
T Consensus 92 ----d~~-~~~-~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 92 ----DIS-NLN-INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp ----CGG-GCC-CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----chh-hhc-ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 222 122 34689999986 7899998888888888888775 7998886
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.30 E-value=4.6e-12 Score=115.28 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=76.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.|.+|||+|||+|..+..+++. ..+|++||+|+.|++.++....... +..+... ..++.. +. .+++||+|+
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~----g~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~~--~~d~~~-~~-~~~~fD~I~ 100 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN----GYDVTAWDKNPASMANLERIKAAEG-LDNLQTD--LVDLNT-LT-FDGEYDFIL 100 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTT-CTTEEEE--ECCTTT-CC-CCCCEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHH----hhhhccccCcHHHHHHHHHHhhhcc-ccchhhh--heeccc-cc-ccccccEEE
Confidence 5679999999999988888773 4589999999999999998775422 2222211 112222 22 357899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
+.+++++++ ..++..+++++.+. +||+++++....
T Consensus 101 ~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 101 STVVMMFLE-AQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EESCGGGSC-TTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EeeeeecCC-HHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 999999997 45566666666553 799999987643
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.28 E-value=4.7e-12 Score=117.62 Aligned_cols=103 Identities=22% Similarity=0.310 Sum_probs=76.0
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccE
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+++.+|||+|||+|..+..+++. ..+|+|||+|++|++.|+..+.. ++.++... +. .++ .+++||+
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~----g~~v~giD~s~~~i~~a~~~~~~--~~~~~~~~-----~~-~~~-~~~~fD~ 84 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEH----FNDITCVEASEEAISHAQGRLKD--GITYIHSR-----FE-DAQ-LPRRYDN 84 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTT----CSCEEEEESCHHHHHHHHHHSCS--CEEEEESC-----GG-GCC-CSSCEEE
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHc----CCeEEEEeCcHHHhhhhhccccc--cccccccc-----cc-ccc-ccccccc
Confidence 356789999999999999887763 35799999999999999987653 33333321 22 122 3578999
Q ss_pred EEecccccCCCCHHHHHHHHH-HHHhcCCCEEEEEecC
Q 012511 170 VIASYVLGEVPSLQDRITIVR-QLWDLTRDVLVLVEPG 206 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~-~Lw~~~gG~LVlVEpG 206 (462)
|++.++|+|++++...+.-+. ++++ +||.+++.-|.
T Consensus 85 I~~~~vleh~~d~~~~l~~i~~~~Lk-~gG~l~i~~pn 121 (225)
T d2p7ia1 85 IVLTHVLEHIDDPVALLKRINDDWLA-EGGRLFLVCPN 121 (225)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTTEE-EEEEEEEEEEC
T ss_pred ccccceeEecCCHHHHHHHHHHHhcC-CCceEEEEeCC
Confidence 999999999998776554443 4444 69999987664
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=3.7e-12 Score=118.03 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=76.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
...+|||+|||+|..+..++.. ...+|++||+|+.|++.|++.+.... +..+... ++. .++...++||+
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~-----d~~-~~~~~~~~fD~ 130 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLP---LFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCC-----GLQ-DFTPEPDSYDV 130 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTT---TCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEEC-----CGG-GCCCCSSCEEE
T ss_pred CCCEEEEeccCCCHhhHHHHHh---cCCEEEEeecCHHHhhccccccccccccccccccc-----ccc-ccccccccccc
Confidence 4579999999999988765432 23589999999999999999876432 1122221 222 23445789999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCc
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 210 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~G 210 (462)
|++.++|+++++ .++..+++++-+. +||.+++.++..+.+
T Consensus 131 I~~~~~l~h~~~-~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~ 172 (222)
T d2ex4a1 131 IWIQWVIGHLTD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEG 172 (222)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSS
T ss_pred cccccccccchh-hhhhhHHHHHHHhcCCcceEEEEEcccccc
Confidence 999999999974 4444444444432 699999998755443
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.25 E-value=7e-12 Score=112.26 Aligned_cols=110 Identities=14% Similarity=-0.023 Sum_probs=74.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCcee-----cchhH----hhhhhccC-
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH-----SYNSI----QALNKDIS- 161 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~-----~~~~~----~~l~~~l~- 161 (462)
++.+|||+|||+|..++.+++. ..+|+|||+|+.|++.|++.++......... ..... .++. .++
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~----G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~l~~ 94 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQ----GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF-ALTA 94 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH----CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS-SSTH
T ss_pred CCCEEEEecCcCCHHHHHHHHc----CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc-cccc
Confidence 5679999999999988888763 4689999999999999999886532110000 00000 0111 011
Q ss_pred CCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 162 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
.....||+|++++++++++ .+.+...++.+.+. +||.++|+....
T Consensus 95 ~~~~~~D~i~~~~~l~~l~-~~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 95 RDIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp HHHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred ccccceeEEEEEeeeEecc-hhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 1235799999999999997 56555566666553 799988876543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.23 E-value=1.2e-11 Score=112.85 Aligned_cols=94 Identities=14% Similarity=0.190 Sum_probs=71.9
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEec
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 173 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias 173 (462)
.+|||+|||+|..+..+. +++|||+|+.|++.|++. ++.++... . ..++..+++||+|+++
T Consensus 38 ~~vLDiGcG~G~~~~~~~--------~~~giD~s~~~~~~a~~~-----~~~~~~~d-----~-~~l~~~~~~fD~I~~~ 98 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLK--------IKIGVEPSERMAEIARKR-----GVFVLKGT-----A-ENLPLKDESFDFALMV 98 (208)
T ss_dssp SCEEEETCTTSTTHHHHT--------CCEEEESCHHHHHHHHHT-----TCEEEECB-----T-TBCCSCTTCEEEEEEE
T ss_pred CeEEEECCCCcccccccc--------eEEEEeCChhhccccccc-----cccccccc-----c-cccccccccccccccc
Confidence 589999999998765543 468999999999999863 23333221 2 2345567899999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 174 YVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 174 ~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
++|++++++...+.-+.++++ +||.|++.++..
T Consensus 99 ~~l~h~~d~~~~l~~~~~~L~-pgG~l~i~~~~~ 131 (208)
T d1vlma_ 99 TTICFVDDPERALKEAYRILK-KGGYLIVGIVDR 131 (208)
T ss_dssp SCGGGSSCHHHHHHHHHHHEE-EEEEEEEEEECS
T ss_pred cccccccccccchhhhhhcCC-CCceEEEEecCC
Confidence 999999988877777777765 699999998854
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=6.4e-11 Score=113.08 Aligned_cols=117 Identities=17% Similarity=0.258 Sum_probs=84.4
Q ss_pred chhHHHHHH-HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceec
Q 012511 71 PAVYSACYR-VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS 149 (462)
Q Consensus 71 p~~Ya~~~~-vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~ 149 (462)
.+.|..+.. +...+...++. ++.+|||+|||+|..+..+++.++ ..++++||+|+.|++.|++...+ +.++..
T Consensus 63 ~g~~~~l~~~~~~~l~~~~~~-~~~~iLDiGcG~G~~~~~l~~~~~--~~~~~giD~s~~~~~~a~~~~~~---~~~~~~ 136 (268)
T d1p91a_ 63 AGHYQPLRDAIVAQLRERLDD-KATAVLDIGCGEGYYTHAFADALP--EITTFGLDVSKVAIKAAAKRYPQ---VTFCVA 136 (268)
T ss_dssp TTTTHHHHHHHHHHHHHHSCT-TCCEEEEETCTTSTTHHHHHHTCT--TSEEEEEESCHHHHHHHHHHCTT---SEEEEC
T ss_pred cCchHHHHHHHHHHHHHhcCC-CCCEEEEeCCCCcHHHHHHHHHCC--CCEEEEecchHhhhhhhhccccc---ccceee
Confidence 344554444 44455556553 578999999999999999888775 35899999999999999876533 333221
Q ss_pred chhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 150 YNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 150 ~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
+.. .++..+++||+|++.++++++. -+.++++ |||.|+++.|+.
T Consensus 137 -----d~~-~l~~~~~sfD~v~~~~~~~~~~-------e~~rvLk-pgG~l~~~~p~~ 180 (268)
T d1p91a_ 137 -----SSH-RLPFSDTSMDAIIRIYAPCKAE-------ELARVVK-PGGWVITATPGP 180 (268)
T ss_dssp -----CTT-SCSBCTTCEEEEEEESCCCCHH-------HHHHHEE-EEEEEEEEEECT
T ss_pred -----ehh-hccCCCCCEEEEeecCCHHHHH-------HHHHHhC-CCcEEEEEeeCC
Confidence 122 3566778999999999887752 3556665 799999999864
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.20 E-value=2.2e-11 Score=114.89 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=72.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
+..+|||+|||+|..+..+.+. ...+|+|||+|+.|++.|+..+.+......+. ....+.........++||+|+
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~---~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~--f~~~D~~~~~~~~~~~fD~V~ 98 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERA---GIGEYYGVDIAEVSINDARVRARNMKRRFKVF--FRAQDSYGRHMDLGKEFDVIS 98 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHH---TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEE--EEESCTTTSCCCCSSCEEEEE
T ss_pred CcCEEEEecccCcHHHHHHHHc---CCCeEEEecCCHHHHHHHHHHHHhcCCCcceE--EEEcchhhhcccccccceEEE
Confidence 3579999999999777766653 24589999999999999998876543222111 001122111112456899999
Q ss_pred ecccccCCCC-HHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 172 ASYVLGEVPS-LQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 172 as~vL~el~~-~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
+.+++|++.. .+....++.++.+. +||+||+..+
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 99 SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp EESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 9999999753 44444555555543 7999998655
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.16 E-value=8.2e-11 Score=111.18 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=81.3
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 161 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~ 161 (462)
..+...++-....+|||||||+|..+.++++.+|. .+++++|. ++|++.++..+........+... ..++. .
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~--~~D~~---~ 141 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPH--VSATVLEM-AGTVDTARSYLKDEGLSDRVDVV--EGDFF---E 141 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEE--ECCTT---S
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcce--eEEEEccC-HHHHHHHHHHHHHhhcccchhhc--cccch---h
Confidence 34444544334589999999999999999998874 58999998 67889888877643321222110 01121 1
Q ss_pred CCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 162 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
....+||+|+++++||+++ +++...+++++.+. |||.|+|+|...
T Consensus 142 ~~~~~~D~v~~~~vlh~~~-d~~~~~~L~~~~~~LkPGG~l~i~e~~~ 188 (253)
T d1tw3a2 142 PLPRKADAIILSFVLLNWP-DHDAVRILTRCAEALEPGGRILIHERDD 188 (253)
T ss_dssp CCSSCEEEEEEESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred hcccchhheeeccccccCC-chhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence 2235799999999999997 56666677777664 799999999644
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.12 E-value=1.2e-10 Score=108.84 Aligned_cols=110 Identities=12% Similarity=0.037 Sum_probs=76.8
Q ss_pred CCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcc
Q 012511 88 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
+|-.++.+|||+|||+|+.+..+++..+ ...|++||.|+.|++.++.++....++..+... ...........+
T Consensus 70 l~ikpG~~VLDlGcGsG~~~~~la~~~~--~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d-----~~~~~~~~~~~~ 142 (230)
T d1g8sa_ 70 MPIKRDSKILYLGASAGTTPSHVADIAD--KGIVYAIEYAPRIMRELLDACAERENIIPILGD-----ANKPQEYANIVE 142 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTT--TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECC-----TTCGGGGTTTCC
T ss_pred CCCCCCCEEEEeCEEcCHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhhhcccceEEEe-----eccCcccccccc
Confidence 3434457999999999999999998765 358999999999999999987765544322211 111111234567
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|++++.+.+++..+....+..+..+++ +||.++|+..
T Consensus 143 ~v~~i~~~~~~~~~~~~~l~~~~r~LK-pgG~~~i~~k 179 (230)
T d1g8sa_ 143 KVDVIYEDVAQPNQAEILIKNAKWFLK-KGGYGMIAIK 179 (230)
T ss_dssp CEEEEEECCCSTTHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred eeEEeeccccchHHHHHHHHHHHHhcc-cCceEEEEee
Confidence 887777777777655555556666665 6999998753
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.10 E-value=3.6e-10 Score=108.63 Aligned_cols=125 Identities=10% Similarity=0.028 Sum_probs=86.5
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
-+..+...+...++.+|||||||.|..+..+++..+ .+|++||+|+++++.|+++++..+....+... ..+.
T Consensus 40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g---~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~--~~d~--- 111 (280)
T d2fk8a1 40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD---VNVIGLTLSKNQHARCEQVLASIDTNRSRQVL--LQGW--- 111 (280)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEE--ESCG---
T ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc---eeEEEecchHHHHHHHHHHHHhhccccchhhh--hhhh---
Confidence 455555555444568999999999988877776554 48999999999999999988765432222111 0111
Q ss_pred cCCCCCcccEEEecccccCCCCH--HHHHHHHHHHHhcCCCEEEEEecCCCCchHHH
Q 012511 160 ISKSEREHDLVIASYVLGEVPSL--QDRITIVRQLWDLTRDVLVLVEPGTPQGSSII 214 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~--~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I 214 (462)
...+++||.|++..++.|+... ..-..-+.++++ |||.++|-...+...+...
T Consensus 112 -~~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lk-pgG~~~i~~i~~~~~~~~~ 166 (280)
T d2fk8a1 112 -EDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQSSVSYHPYEMA 166 (280)
T ss_dssp -GGCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEEEEECCCHHHHH
T ss_pred -hhhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccC-CCceEEEEEeeccCcchhh
Confidence 1235689999999999999743 344555666665 7999999776665555443
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.08 E-value=3.3e-10 Score=107.40 Aligned_cols=106 Identities=20% Similarity=0.184 Sum_probs=76.7
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
..+|||||||+|..+.++++.+|. .+++++|. +++++.++..+........+... ..++. .....+||+|++
T Consensus 82 ~~~vlDvG~G~G~~~~~l~~~~P~--~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~--~~d~~---~~~p~~~D~v~~ 153 (256)
T d1qzza2 82 VRHVLDVGGGNGGMLAAIALRAPH--LRGTLVEL-AGPAERARRRFADAGLADRVTVA--EGDFF---KPLPVTADVVLL 153 (256)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEE--ECCTT---SCCSCCEEEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhhcC--cEEEEecC-hHHHHHHHHHHhhcCCcceeeee--eeecc---ccccccchhhhc
Confidence 478999999999999999998874 58999997 78889888877543322222110 01111 112346999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
+++||+++ +++...+++++.+. |||.|+|+|.-.
T Consensus 154 ~~vLh~~~-d~~~~~lL~~i~~~LkpgG~llI~d~~~ 189 (256)
T d1qzza2 154 SFVLLNWS-DEDALTILRGCVRALEPGGRLLVLDRAD 189 (256)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred cccccccC-cHHHHHHHHHHHhhcCCcceeEEEEecc
Confidence 99999996 66666677776654 799999999754
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=1.1e-10 Score=112.42 Aligned_cols=105 Identities=21% Similarity=0.250 Sum_probs=70.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCC----ceecchhHhhhhhccCCCCCccc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP----LIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~----~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
+.+|||+|||+|..+..+++. ..+|+|||+|+.|++.|++......... .......+..+...++ ...+||
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~----g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fd 131 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEE----GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFD 131 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCEE
T ss_pred CCEEEEecCCCcHHHHHHHHc----CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCce
Confidence 479999999999999888873 4589999999999999988765432111 0000001111222232 346899
Q ss_pred EEEec-ccccCCCCH----HHHHHHHHHHHhc--CCCEEEE
Q 012511 169 LVIAS-YVLGEVPSL----QDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 169 LVias-~vL~el~~~----~~r~~~i~~Lw~~--~gG~LVl 202 (462)
+|++. ++|+|+++. +++..+++++.+. |||.|||
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 172 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence 99875 689998753 4556666666664 7999887
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=2.7e-10 Score=105.79 Aligned_cols=110 Identities=13% Similarity=-0.034 Sum_probs=75.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC------C---ce-e----cchhHhhhh
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL------P---LI-H----SYNSIQALN 157 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~------~---~i-~----~~~~~~~l~ 157 (462)
.+.+|||+|||+|..+..+++ ...+|+|||.|+.|++.|++........ + .. . ......++.
T Consensus 45 ~~~rvLd~GCG~G~~a~~LA~----~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 45 SGLRVFFPLCGKAVEMKWFAD----RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp CSCEEEETTCTTCTHHHHHHH----TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCEEEEeCCCCcHHHHHHHh----CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 457999999999988888877 3568999999999999998876532100 0 00 0 000001111
Q ss_pred hccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 158 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 158 ~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
...+.....||+|+...+|++++ ++.+..+++++.+. |||.++|+-..
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~-~~~r~~~~~~~~~~LkpgG~~~l~~~~ 170 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAIN-PGDRKCYADTMFSLLGKKFQYLLCVLS 170 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred hccccccCceeEEEEEEEEEecc-chhhHHHHHHHHhhcCCcceEEEEEcc
Confidence 11123467899999999999996 66677666666664 79998887543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=2.1e-10 Score=109.03 Aligned_cols=123 Identities=13% Similarity=0.133 Sum_probs=76.5
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC-CCceecchhH----
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSI---- 153 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~-~~~i~~~~~~---- 153 (462)
+.|.++... +..++.+|||+|||||......+.- ...+|+++|.|+.|++.+++.+++... ..+.+.....
T Consensus 42 ~~~~~~f~~-g~~~g~~vLDiGcG~g~~~~~~~~~---~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~ 117 (263)
T d2g72a1 42 RCLAQTFAT-GEVSGRTLIDIGSGPTVYQLLSACS---HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIE 117 (263)
T ss_dssp HHHHHHHHT-SCSCCSEEEEETCTTCCGGGTTGGG---GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCCCCcEEEEeccCCCHHHHHHhcc---cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhc
Confidence 344443332 3456789999999999654322221 235899999999999999988765331 1110000000
Q ss_pred ----------------------hhhhh-----ccCCCCCcccEEEecccccCCC-CHHHHHHHHHHHHhc--CCCEEEEE
Q 012511 154 ----------------------QALNK-----DISKSEREHDLVIASYVLGEVP-SLQDRITIVRQLWDL--TRDVLVLV 203 (462)
Q Consensus 154 ----------------------~~l~~-----~l~~~~~~fDLVias~vL~el~-~~~~r~~~i~~Lw~~--~gG~LVlV 203 (462)
.++.. ..+...++||+|++.++|+++. +.++-..+|+++.+. |||+||+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~ 197 (263)
T d2g72a1 118 GKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 197 (263)
T ss_dssp CSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 00100 0112345799999999999995 344555667777664 89999997
Q ss_pred ec
Q 012511 204 EP 205 (462)
Q Consensus 204 Ep 205 (462)
..
T Consensus 198 ~~ 199 (263)
T d2g72a1 198 GA 199 (263)
T ss_dssp EE
T ss_pred cc
Confidence 65
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=2.1e-10 Score=107.47 Aligned_cols=116 Identities=10% Similarity=-0.000 Sum_probs=74.0
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC-CCceecchhHhhh-------------
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQAL------------- 156 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~-~~~i~~~~~~~~l------------- 156 (462)
.++.+|||+|||+|..+..++.. ...+|+++|.|+.|++.|++.+..... .........+.++
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~---~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACD---SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG---TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcc---ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 35679999999999765433331 245899999999999999998765331 1100000000000
Q ss_pred -------------h-h--ccCCCCCcccEEEecccccCCCCH-HHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 157 -------------N-K--DISKSEREHDLVIASYVLGEVPSL-QDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 157 -------------~-~--~l~~~~~~fDLVias~vL~el~~~-~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
. . ..+...++||+|++.++|++++.. ++...+++++.+. |||+||+.+.....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~ 198 (257)
T d2a14a1 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP 198 (257)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC
T ss_pred HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccc
Confidence 0 0 012346789999999999999643 3444555665554 79999998875443
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.97 E-value=2.1e-09 Score=103.65 Aligned_cols=121 Identities=13% Similarity=0.060 Sum_probs=83.8
Q ss_pred HHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhh
Q 012511 78 YRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN 157 (462)
Q Consensus 78 ~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~ 157 (462)
.+-+..+..++....+.+|||||||.|..+..+++.++ .++++|++|++.++.|++++...+....+... ..+
T Consensus 47 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g---~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~--~~d-- 119 (291)
T d1kpia_ 47 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVR--IQG-- 119 (291)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEE--ECC--
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC---cceeeccchHHHHHHHHHHHHhhccchhhhhh--hhc--
Confidence 34556666666555668999999999988877776665 48999999999999999887654322222211 011
Q ss_pred hccCCCCCcccEEEecccccCCCCH---------HHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 158 KDISKSEREHDLVIASYVLGEVPSL---------QDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 158 ~~l~~~~~~fDLVias~vL~el~~~---------~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
.+..+++||.|++--++.|+++. ..-...+.++++ |||.+++=.-+.+
T Consensus 120 --~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lk-pgG~~~l~~i~~~ 176 (291)
T d1kpia_ 120 --WEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP-DDGRMLLHTITIP 176 (291)
T ss_dssp --GGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSC-TTCEEEEEEEECC
T ss_pred --ccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCC-CCCceEEEEEecc
Confidence 22346789999999999999753 233455555554 7999998554443
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=8.8e-10 Score=102.42 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=73.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC-CCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~-~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+|||||||+|..+..+++. ...++++||+|+.|++.|++.+..... +..+.. ....+.. +...++||+|
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~---~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~fD~i 125 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEA---PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG--LWEDVAP--TLPDGHFDGI 125 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTS---CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES--CHHHHGG--GSCTTCEEEE
T ss_pred CCCeEEEeeccchHHHHHHHHc---CCCeEEEeCCCHHHHHHHHHHhhhcccccccccc--ccccccc--ccccccccce
Confidence 4579999999999988887763 246899999999999999998765432 111111 1122222 2345678887
Q ss_pred E-----ecccccCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 171 I-----ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 171 i-----as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
+ +.+.+.++.+....+..+.++++ |||.|++.
T Consensus 126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~Lk-pGG~~~~~ 162 (229)
T d1zx0a1 126 LYDTYPLSEETWHTHQFNFIKNHAFRLLK-PGGVLTYC 162 (229)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEE-EEEEEEEC
T ss_pred eecccccccccccccCHHHHHHHHHHHcC-CCcEEEEE
Confidence 6 57788888766666777778876 69999874
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.95 E-value=5.9e-10 Score=100.91 Aligned_cols=107 Identities=14% Similarity=0.196 Sum_probs=70.9
Q ss_pred HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCC--CceecchhHhhhhhccCC
Q 012511 87 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDL--PLIHSYNSIQALNKDISK 162 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~--~~i~~~~~~~~l~~~l~~ 162 (462)
.++..++.+|||+|||+|..+.+++.. ..+++++|.|+.|++.|++.++.. .+. .++.. ++... .
T Consensus 47 ~l~~~~~~~VLDiGcG~G~~~~~la~~----~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~-----d~~~~--~ 115 (194)
T d1dusa_ 47 NVVVDKDDDILDLGCGYGVIGIALADE----VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS-----DLYEN--V 115 (194)
T ss_dssp HCCCCTTCEEEEETCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC-----STTTT--C
T ss_pred hCCcCCCCeEEEEeecCChhHHHHHhh----ccccceeeeccccchhHHHHHHHhCCccceEEEEEc-----chhhh--h
Confidence 445556789999999999999888764 347999999999999999876532 221 11111 22212 2
Q ss_pred CCCcccEEEecccccCCCCH-HHHHHHHHHHHhcCCCEEEEEec
Q 012511 163 SEREHDLVIASYVLGEVPSL-QDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 163 ~~~~fDLVias~vL~el~~~-~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
.+++||+|+++..++...+. +..+..+.++++ +||.|+++..
T Consensus 116 ~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~ 158 (194)
T d1dusa_ 116 KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLK-DNGEIWVVIQ 158 (194)
T ss_dssp TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred ccCCceEEEEcccEEecchhhhhHHHHHHHhcC-cCcEEEEEEe
Confidence 45789999998887665321 222334444444 6998877643
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.94 E-value=1.2e-09 Score=103.48 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHh
Q 012511 76 ACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQ 154 (462)
Q Consensus 76 ~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~ 154 (462)
.+.-+|..|.+.. .++.+|||+|||+|..+.+++.. ..+|++||+|+.|++.|+++++... +..++..
T Consensus 106 TT~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~----g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~----- 174 (254)
T d2nxca1 106 TTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKL----GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEG----- 174 (254)
T ss_dssp HHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHT----TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEES-----
T ss_pred hhhHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhc----CCEEEEEECChHHHHHHHHHHHHcCCceeEEec-----
Confidence 3444555555543 24589999999999988887763 3479999999999999998876432 2222221
Q ss_pred hhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 155 ALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 155 ~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
++...+ ..++||+|+++...+.+. +....+.++++ |||.|++-.
T Consensus 175 d~~~~~--~~~~fD~V~ani~~~~l~---~l~~~~~~~Lk-pGG~lilSg 218 (254)
T d2nxca1 175 SLEAAL--PFGPFDLLVANLYAELHA---ALAPRYREALV-PGGRALLTG 218 (254)
T ss_dssp CHHHHG--GGCCEEEEEEECCHHHHH---HHHHHHHHHEE-EEEEEEEEE
T ss_pred cccccc--cccccchhhhccccccHH---HHHHHHHHhcC-CCcEEEEEe
Confidence 122222 346899999986655432 23344555554 799999843
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.93 E-value=4.4e-09 Score=101.11 Aligned_cols=120 Identities=14% Similarity=0.121 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhh
Q 012511 76 ACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQA 155 (462)
Q Consensus 76 ~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~ 155 (462)
+-.+.++.+..++...++.+|||+|||.|..+..+++..+ .+|++|.+|+..++.|+++....+....+... ..+
T Consensus 46 AQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g---~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~--~~d 120 (285)
T d1kpga_ 46 AQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD---VNVVGLTLSKNQANHVQQLVANSENLRSKRVL--LAG 120 (285)
T ss_dssp HHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEE--ESC
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC---cceEEEeccHHHHHHHHHHHHhhhhhhhhHHH--Hhh
Confidence 4455667777777655668999999999988876666554 59999999999999999987665444333211 112
Q ss_pred hhhccCCCCCcccEEEecccccCCCCH--HHHHHHHHHHHhcCCCEEEEEec
Q 012511 156 LNKDISKSEREHDLVIASYVLGEVPSL--QDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 156 l~~~l~~~~~~fDLVias~vL~el~~~--~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
+. ..+++||-|++-.++.|+... ......+.++++ |||.++|-.-
T Consensus 121 ~~----~~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lk-pgG~~~l~~i 167 (285)
T d1kpga_ 121 WE----QFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLHTI 167 (285)
T ss_dssp GG----GCCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEEEE
T ss_pred hh----cccccccceeeehhhhhcCchhHHHHHHHHHhhcC-CCCcEEEEEE
Confidence 21 234689999999999999643 444556666664 7999987443
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.91 E-value=2.9e-09 Score=98.08 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=70.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+..++...+ ....|+++|.+++|++.|+..++... +...+.. +..... ...++||+
T Consensus 75 ~g~~VLdiG~GtG~~s~~la~~~~-~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~-----d~~~~~-~~~~~fD~ 147 (213)
T d1dl5a1 75 KGMRVLEIGGGTGYNAAVMSRVVG-EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG-----DGYYGV-PEFSPYDV 147 (213)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-----CGGGCC-GGGCCEEE
T ss_pred ccceEEEecCccchhHHHHHHHhC-CCCcEEEeecchhhHHHhhhhHhhhcccccccccC-----chHHcc-ccccchhh
Confidence 457999999999998877777654 34689999999999999999886533 2222221 222222 34568999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
|+++.+++++++ .++++ ++ +||.||+.
T Consensus 148 I~~~~~~~~~p~-----~l~~~-Lk-pGG~lv~p 174 (213)
T d1dl5a1 148 IFVTVGVDEVPE-----TWFTQ-LK-EGGRVIVP 174 (213)
T ss_dssp EEECSBBSCCCH-----HHHHH-EE-EEEEEEEE
T ss_pred hhhhccHHHhHH-----HHHHh-cC-CCcEEEEE
Confidence 999999999972 23333 33 79999884
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.85 E-value=3.2e-09 Score=97.51 Aligned_cols=109 Identities=13% Similarity=0.027 Sum_probs=68.2
Q ss_pred CCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcc
Q 012511 88 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
++-.++.+|||+|||+|+.+..+++..++ .+|++||+|+.|++.+++.++..+++..+... .. ..+.....+
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~--g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d-----~~-~~~~~~~~~ 123 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDE--GIIYAVEYSAKPFEKLLELVRERNNIIPLLFD-----AS-KPWKYSGIV 123 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTT--SEEEEECCCHHHHHHHHHHHHHCSSEEEECSC-----TT-CGGGTTTTC
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccC--CeEEEEeCCHHHHHHHHHHhhccCCceEEEee-----cc-Ccccccccc
Confidence 34334589999999999999999998863 48999999999999999888765554333221 11 111112233
Q ss_pred cEEEe-cccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 168 DLVIA-SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 168 DLVia-s~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|.|.+ .+.+.+..+....+..+.++++ +||.++++..
T Consensus 124 ~~vd~v~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~ 161 (209)
T d1nt2a_ 124 EKVDLIYQDIAQKNQIEILKANAEFFLK-EKGEVVIMVK 161 (209)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred ceEEEEEecccChhhHHHHHHHHHHHhc-cCCeEEEEEE
Confidence 33322 2233333333333444555554 6999999864
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.84 E-value=3.4e-09 Score=95.21 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=73.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
+..+|||+|||+|..+.+++.. ..+|+++|.|+.|++.|++.++..+ ++.+++.. ... .......||
T Consensus 33 ~g~~VLDiGcGsG~~s~~lA~~----~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gd-----a~~-~~~~~~~~D 102 (186)
T d1l3ia_ 33 KNDVAVDVGCGTGGVTLELAGR----VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD-----APE-ALCKIPDID 102 (186)
T ss_dssp TTCEEEEESCTTSHHHHHHHTT----SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESC-----HHH-HHTTSCCEE
T ss_pred CCCEEEEEECCeEccccccccc----ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECc-----hhh-cccccCCcC
Confidence 4579999999999988887753 3589999999999999999886543 22233221 111 123456899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
+|++....+++ .+.+..+.++++ +||.||+.... .+....+++.+
T Consensus 103 ~v~~~~~~~~~---~~~~~~~~~~Lk-pgG~lvi~~~~----~e~~~~~~~~l 147 (186)
T d1l3ia_ 103 IAVVGGSGGEL---QEILRIIKDKLK-PGGRIIVTAIL----LETKFEAMECL 147 (186)
T ss_dssp EEEESCCTTCH---HHHHHHHHHTEE-EEEEEEEEECB----HHHHHHHHHHH
T ss_pred EEEEeCccccc---hHHHHHHHHHhC-cCCEEEEEeec----cccHHHHHHHH
Confidence 99998765543 333334444443 79999886542 23444445543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.84 E-value=1.7e-09 Score=101.98 Aligned_cols=109 Identities=16% Similarity=0.191 Sum_probs=75.9
Q ss_pred HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCc
Q 012511 87 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSERE 166 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~ 166 (462)
++.-..+.+|||+|||+|..+.+++...+ ...+|+++|.+++|++.|++.++.......+... ..++...+ .+..
T Consensus 80 ~l~i~pG~rVLEiG~GsG~lt~~la~~v~-~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~--~~Di~~~~--~~~~ 154 (250)
T d1yb2a1 80 RCGLRPGMDILEVGVGSGNMSSYILYALN-GKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS--RSDIADFI--SDQM 154 (250)
T ss_dssp -CCCCTTCEEEEECCTTSHHHHHHHHHHT-TSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEE--CSCTTTCC--CSCC
T ss_pred HcCCCCcCEEEEeeeeCcHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEE--Eeeeeccc--ccce
Confidence 33333458999999999999888887654 3469999999999999999988764332222110 12233222 4568
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 167 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
||.|++ +++++...+..+.++++ |||+|++..|.
T Consensus 155 fD~V~l-----d~p~p~~~l~~~~~~LK-pGG~lv~~~P~ 188 (250)
T d1yb2a1 155 YDAVIA-----DIPDPWNHVQKIASMMK-PGSVATFYLPN 188 (250)
T ss_dssp EEEEEE-----CCSCGGGSHHHHHHTEE-EEEEEEEEESS
T ss_pred eeeeee-----cCCchHHHHHHHHHhcC-CCceEEEEeCC
Confidence 999985 46677666666666665 69999998774
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.80 E-value=3.3e-09 Score=100.75 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=76.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-----CCCCceecchhHhhhhhccCCCCCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-----KDLPLIHSYNSIQALNKDISKSERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-----~~~~~i~~~~~~~~l~~~l~~~~~~ 166 (462)
++.+|||+|||+|..+.+++...+ ...+|+++|.+++|++.|++.++.. .+..++. .++.. .+..+..
T Consensus 96 PG~~VLE~G~GsG~lt~~La~~vg-p~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~-----~d~~~-~~~~~~~ 168 (264)
T d1i9ga_ 96 PGARVLEAGAGSGALTLSLLRAVG-PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV-----SDLAD-SELPDGS 168 (264)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC-----SCGGG-CCCCTTC
T ss_pred CCCEEEecCcCCcHHHHHHHHhhC-CCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEe-----ccccc-ccccCCC
Confidence 458999999999999988887765 3568999999999999999877542 1222221 12221 2345788
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 167 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
||.|+. +++++.+.+..+.++++ |||.|++..|..
T Consensus 169 fDaV~l-----dlp~P~~~l~~~~~~Lk-pGG~lv~~~P~i 203 (264)
T d1i9ga_ 169 VDRAVL-----DMLAPWEVLDAVSRLLV-AGGVLMVYVATV 203 (264)
T ss_dssp EEEEEE-----ESSCGGGGHHHHHHHEE-EEEEEEEEESSH
T ss_pred cceEEE-----ecCCHHHHHHHHHhccC-CCCEEEEEeCcc
Confidence 999875 57888887887888886 699999988753
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.80 E-value=4.6e-09 Score=97.68 Aligned_cols=108 Identities=10% Similarity=0.057 Sum_probs=70.5
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.++.+|||+|||+|+.+..+++..+. ..+|++||+|+.|++.++.+++...++..+.... ......+.....+|+|
T Consensus 72 ~pG~~VLDlGaGsG~~t~~la~~VG~-~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~---~~~~~~~~~~~~vD~i 147 (227)
T d1g8aa_ 72 KPGKSVLYLGIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA---TKPEEYRALVPKVDVI 147 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT---TCGGGGTTTCCCEEEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEEC---CCcccccccccceEEE
Confidence 34579999999999999999998763 5799999999999999999887665543322111 0111122234567877
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
++. +.+.......+..+..+++ +||.++|+..
T Consensus 148 ~~d--~~~~~~~~~~l~~~~~~Lk-pgG~lvi~~k 179 (227)
T d1g8aa_ 148 FED--VAQPTQAKILIDNAEVYLK-RGGYGMIAVK 179 (227)
T ss_dssp EEC--CCSTTHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred EEE--ccccchHHHHHHHHHHhcc-cCCeEEEEEE
Confidence 654 2333223333444444444 6999998754
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.77 E-value=1.8e-08 Score=93.35 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=69.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|..+..++.. ..+|+++|.++.+++.|++++....++.++... .....+ ...+||.|+
T Consensus 70 ~g~~VLdIG~GsGy~ta~La~l----~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d-----~~~g~~-~~~pfD~Ii 139 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYTALIAEI----VDKVVSVEINEKMYNYASKLLSYYNNIKLILGD-----GTLGYE-EEKPYDRVV 139 (224)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH----SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESC-----GGGCCG-GGCCEEEEE
T ss_pred ccceEEEecCCCCHHHHHHHHH----hcccccccccHHHHHHHHHHHhcccccccccCc-----hhhcch-hhhhHHHHH
Confidence 4579999999999888767764 358999999999999999988776555444332 222222 356899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
++.++.+++. .++++| + +||.||+.
T Consensus 140 v~~a~~~ip~-----~l~~qL-k-~GGrLV~p 164 (224)
T d1vbfa_ 140 VWATAPTLLC-----KPYEQL-K-EGGIMILP 164 (224)
T ss_dssp ESSBBSSCCH-----HHHHTE-E-EEEEEEEE
T ss_pred hhcchhhhhH-----HHHHhc-C-CCCEEEEE
Confidence 9999999872 133333 3 79999885
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.75 E-value=6.9e-09 Score=98.73 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=75.6
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.++.+|||+|||+|..+.+++...+ ...+|+++|.|++|++.|++.++.......+... ..++... .....||.|
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~~-~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~--~~d~~~~--~~~~~~D~V 176 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAVG-SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK--VRDISEG--FDEKDVDAL 176 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTT-TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEE--CCCGGGC--CSCCSEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEE--ecccccc--ccccceeee
Confidence 4568999999999999988888775 3569999999999999999998765422222110 1122211 234567776
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+ .+++++.+.+..+.++++ |||.|++..|.
T Consensus 177 ~-----~d~p~p~~~l~~~~~~LK-pGG~lv~~~P~ 206 (266)
T d1o54a_ 177 F-----LDVPDPWNYIDKCWEALK-GGGRFATVCPT 206 (266)
T ss_dssp E-----ECCSCGGGTHHHHHHHEE-EEEEEEEEESS
T ss_pred E-----ecCCCHHHHHHHHHhhcC-CCCEEEEEeCc
Confidence 5 567888877777777776 79999998874
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=9.4e-09 Score=95.30 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=68.0
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-------CCCceecchhHhhhhhccCCCCC
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-------DLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-------~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
+.+|||+|||+|..+..++...+ ...+|++||.+++|++.|++.++... +...+. .+... ......
T Consensus 77 g~~VLdiG~GsGy~ta~la~l~~-~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~-----gD~~~-~~~~~~ 149 (224)
T d1i1na_ 77 GAKALDVGSGSGILTACFARMVG-CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV-----GDGRM-GYAEEA 149 (224)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE-----SCGGG-CCGGGC
T ss_pred CCeEEEecCCCCHHHHHHHHHhC-CCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEE-----eeccc-ccchhh
Confidence 47999999999987766666443 24689999999999999998875321 111111 11211 123456
Q ss_pred cccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 166 EHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 166 ~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
.||.|+++.++.+++. .++++| ++||.||+.-
T Consensus 150 ~fD~I~~~~~~~~ip~-----~l~~~L--kpGG~LV~pv 181 (224)
T d1i1na_ 150 PYDAIHVGAAAPVVPQ-----ALIDQL--KPGGRLILPV 181 (224)
T ss_dssp CEEEEEECSBBSSCCH-----HHHHTE--EEEEEEEEEE
T ss_pred hhhhhhhhcchhhcCH-----HHHhhc--CCCcEEEEEE
Confidence 8999999999999972 234443 3799999854
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.6e-08 Score=99.06 Aligned_cols=121 Identities=11% Similarity=0.127 Sum_probs=75.6
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-----------CCCCce
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-----------KDLPLI 147 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-----------~~~~~i 147 (462)
..+.++.+.+......+|||+|||+|..+..++...+ ..+++|||.|+.|++.|+..++.. .++.++
T Consensus 138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~--~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~ 215 (328)
T d1nw3a_ 138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN--CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE 215 (328)
T ss_dssp HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCC--CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEE
T ss_pred HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEE
Confidence 3455666665444567999999999998887777665 468999999999999998876431 122233
Q ss_pred ecchhHhhhhhccCCCCC--cccEEEecccccCCCCHHHHHHHHHHHHh--cCCCEEEEEecCCCCch
Q 012511 148 HSYNSIQALNKDISKSER--EHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTPQGS 211 (462)
Q Consensus 148 ~~~~~~~~l~~~l~~~~~--~fDLVias~vL~el~~~~~r~~~i~~Lw~--~~gG~LVlVEpGtp~Gf 211 (462)
+.. +. ..+..+. .+|+|++++.+ +.++.. ..+..+++ ++||.+|+.++-.|.+|
T Consensus 216 ~gd-----~~-~~~~~~~~~~advi~~~~~~-f~~~~~---~~l~e~~r~LKpGg~iv~~~~~~~~~~ 273 (328)
T d1nw3a_ 216 RGD-----FL-SEEWRERIANTSVIFVNNFA-FGPEVD---HQLKERFANMKEGGRIVSSKPFAPLNF 273 (328)
T ss_dssp ECC-----TT-SHHHHHHHHHCSEEEECCTT-TCHHHH---HHHHHHHTTCCTTCEEEESSCSSCTTC
T ss_pred ECc-----cc-ccccccccCcceEEEEccee-cchHHH---HHHHHHHHhCCCCcEEEEecccCCCCc
Confidence 221 11 0111111 24777775543 433333 34445544 37999999887666665
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.61 E-value=1.1e-07 Score=86.55 Aligned_cols=104 Identities=10% Similarity=0.055 Sum_probs=73.4
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
..|||||||+|..+..++...|+ ..++|||++..|+..|...+... .|+.++.... ..+... ...+++|.|+
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~--~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da--~~l~~~--~~~~~~d~v~ 104 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA--DTLTDV--FEPGEVKRVY 104 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG--GGHHHH--CCTTSCCEEE
T ss_pred ceEEEEEecCcHHHHHHHHhCCC--CcEEEeecchHHHHHHHHHHHHHhccCchhcccch--hhhhcc--cCchhhhccc
Confidence 37999999999999999988874 58999999999999988776543 3443333321 122222 2467899999
Q ss_pred ecccccCCCCH--------HHHHHHHHHHHhcCCCEEEEEe
Q 012511 172 ASYVLGEVPSL--------QDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 172 as~vL~el~~~--------~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+.+..-+.... .+-+..+.++++ |||.|+|..
T Consensus 105 i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lk-pgG~l~i~T 144 (204)
T d2fcaa1 105 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMG-KGGSIHFKT 144 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHHT-TSCEEEEEE
T ss_pred cccccccchhhhcchhhhHHHHHHHHHHhCC-CCcEEEEEE
Confidence 88877665422 234556667665 799999864
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=6.3e-08 Score=94.43 Aligned_cols=99 Identities=16% Similarity=0.139 Sum_probs=64.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC---CceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL---PLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~---~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
++++|||+|||+|..+..+++. ...+|+++|.|+ |+..|++..+..+.. .+++. ++. .++.+..+||
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~---Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~-----~~~-~l~~~~~~~D 107 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKH---GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRG-----KLE-DVHLPFPKVD 107 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT---CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEES-----CTT-TSCCSSSCEE
T ss_pred CcCEEEEeCCCCCHHHHHHHHh---CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEe-----ehh-hccCccccee
Confidence 4589999999999888777763 235899999996 667777766543322 22221 121 2344567999
Q ss_pred EEEecccccCCCC---HHHHHHHHHHHHhcCCCEEE
Q 012511 169 LVIASYVLGEVPS---LQDRITIVRQLWDLTRDVLV 201 (462)
Q Consensus 169 LVias~vL~el~~---~~~r~~~i~~Lw~~~gG~LV 201 (462)
+|++..+.+.+.. ....+..+.++++ |||.++
T Consensus 108 ~i~se~~~~~~~~e~~~~~~~~a~~r~Lk-pgG~ii 142 (328)
T d1g6q1_ 108 IIISEWMGYFLLYESMMDTVLYARDHYLV-EGGLIF 142 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred EEEEEecceeeccchhHHHHHHHHHhccC-CCeEEE
Confidence 9999766655543 3444555666775 577653
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.56 E-value=3.7e-08 Score=98.73 Aligned_cols=127 Identities=9% Similarity=0.004 Sum_probs=73.8
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--------CCCceecc
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--------DLPLIHSY 150 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--------~~~~i~~~ 150 (462)
..+.++.+++.-.+..+|||+|||+|..+..++..++ ..+++|||.|+.|++.|+...+... ........
T Consensus 203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g--~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~ 280 (406)
T d1u2za_ 203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG--CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS 280 (406)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC--CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceee
Confidence 3455566665444557999999999998888877665 4589999999999999998765311 00000000
Q ss_pred hhHhhhhh-ccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCch
Q 012511 151 NSIQALNK-DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 151 ~~~~~l~~-~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf 211 (462)
.....+.. .....-..+|+|++++.+ +.++ ....+.++++. +||.+|..++--|.++
T Consensus 281 ~~~~f~~~~~~d~~~~~adVV~inn~~-f~~~---l~~~L~ei~r~LKPGGrIVs~~~~~~~~~ 340 (406)
T d1u2za_ 281 LKKSFVDNNRVAELIPQCDVILVNNFL-FDED---LNKKVEKILQTAKVGCKIISLKSLRSLTY 340 (406)
T ss_dssp ESSCSTTCHHHHHHGGGCSEEEECCTT-CCHH---HHHHHHHHHTTCCTTCEEEESSCSSCTTC
T ss_pred eeechhhccccccccccceEEEEeccc-CchH---HHHHHHHHHHhcCCCcEEEEecccCCCch
Confidence 00000000 000112356888876533 3332 33444455442 7999998775444444
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.53 E-value=1.3e-07 Score=85.37 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=70.7
Q ss_pred CCCCCeEEEECCchhHHHHH----HHHhCC--CCccEEEEEeCCHHHHHHHHHhhcC---CCCCCc-------ee-----
Q 012511 90 GFSPAKVLDFGAGTGSAFWA----LREVWP--RSLEKVNLVEPSQSMQRAGQSLMQG---PKDLPL-------IH----- 148 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~a----l~~~~~--~~~~~v~~VD~S~~ml~~Ak~ll~~---~~~~~~-------i~----- 148 (462)
...+.+|+++|||+|.-++. +.+... ....+++++|+|+.+++.|+.-.-. ....+. ..
T Consensus 22 ~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~ 101 (193)
T d1af7a2 22 RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH 101 (193)
T ss_dssp SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCc
Confidence 34578999999999964433 333221 1235899999999999999854311 001110 00
Q ss_pred -----cchhH--------hhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 149 -----SYNSI--------QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 149 -----~~~~~--------~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
..... .++....+...++||+|+|-|||.++. ++.+..+++++.+. |||+|+|
T Consensus 102 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~-~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 102 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 00000 001101112356899999999999996 77788888888886 8998887
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=8.7e-08 Score=93.40 Aligned_cols=105 Identities=13% Similarity=0.116 Sum_probs=69.5
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-------------CCCCceecchhHhhhh
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-------------KDLPLIHSYNSIQALN 157 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-------------~~~~~i~~~~~~~~l~ 157 (462)
.++.+|||+|||+|..+.+++...+ ...+|+++|.+++|++.|++.++.. .++.+.+ .++.
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~vg-~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~-----~di~ 170 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAVG-SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH-----KDIS 170 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE-----SCTT
T ss_pred CCCCEEEEecccccHHHHHHHHHhC-CCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe-----cchh
Confidence 3468999999999999998887765 3568999999999999999877531 1111111 1121
Q ss_pred hcc-CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 158 KDI-SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 158 ~~l-~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
... ......||.|+. .++++...+..+.++++ |||.|++.-|..
T Consensus 171 ~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LK-pGG~lv~~~P~i 215 (324)
T d2b25a1 171 GATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLK-HGGVCAVYVVNI 215 (324)
T ss_dssp CCC-------EEEEEE-----CSSSTTTTHHHHGGGEE-EEEEEEEEESSH
T ss_pred hcccccCCCCcceEee-----cCcCHHHHHHHHHHhcc-CCCEEEEEeCCH
Confidence 111 123457998874 56666665666666665 799999988754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.48 E-value=2.2e-07 Score=84.17 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=52.1
Q ss_pred CCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCccc
Q 012511 89 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 89 p~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
+++.+++|||+|||+|..+.++... + ..+|++||.++.+++.|++++.+ +.++.. ++. ...++||
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~-g--a~~V~~vDid~~a~~~ar~N~~~---~~~~~~-----D~~----~l~~~fD 109 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLL-G--AESVTAFDIDPDAIETAKRNCGG---VNFMVA-----DVS----EISGKYD 109 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT-T--BSEEEEEESCHHHHHHHHHHCTT---SEEEEC-----CGG----GCCCCEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHc-C--CCcccccccCHHHHHHHHHcccc---ccEEEE-----ehh----hcCCcce
Confidence 5677899999999999887766652 2 35899999999999999987654 223222 222 2346899
Q ss_pred EEEecc
Q 012511 169 LVIASY 174 (462)
Q Consensus 169 LVias~ 174 (462)
+||++=
T Consensus 110 ~Vi~NP 115 (197)
T d1ne2a_ 110 TWIMNP 115 (197)
T ss_dssp EEEECC
T ss_pred EEEeCc
Confidence 999873
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=3e-07 Score=88.71 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=64.8
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcc
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+++++|||+|||+|..++.+++. ...+|+++|.|+.|...++....+.. ++.+++. ++. .++....+|
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~---Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~-----~~~-~l~~~~~~~ 103 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKA---GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKG-----KIE-EVHLPVEKV 103 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT---TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEES-----CTT-TSCCSCSCE
T ss_pred cCCcCEEEEECCCCCHHHHHHHHc---CCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEe-----eHH-HhcCccccc
Confidence 456789999999999988877763 23589999999998765554433321 1222221 121 233456799
Q ss_pred cEEEecccccCCCCH---HHHHHHHHHHHhcCCCEEE
Q 012511 168 DLVIASYVLGEVPSL---QDRITIVRQLWDLTRDVLV 201 (462)
Q Consensus 168 DLVias~vL~el~~~---~~r~~~i~~Lw~~~gG~LV 201 (462)
|+|++..+.+.+... .......+++++ |||.++
T Consensus 104 D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lk-p~G~ii 139 (311)
T d2fyta1 104 DVIISEWMGYFLLFESMLDSVLYAKNKYLA-KGGSVY 139 (311)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEE-EEEEEE
T ss_pred eEEEEeeeeeecccccccHHHHHHHHhcCC-CCcEEe
Confidence 999997666666432 233444556665 688765
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.41 E-value=5.1e-07 Score=81.88 Aligned_cols=104 Identities=19% Similarity=0.187 Sum_probs=64.6
Q ss_pred HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC-CceecchhHhhhhhccCCCCC
Q 012511 87 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~-~~i~~~~~~~~l~~~l~~~~~ 165 (462)
..++..+.+|||+|||+|..+.+++. .+ ..+|++||.|+.+++.+++.++..... .++.. +. ....+
T Consensus 41 ~~~dl~g~~vLDlg~GtG~l~i~a~~-~g--~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~-----d~----~~~~~ 108 (201)
T d1wy7a1 41 SLGDIEGKVVADLGAGTGVLSYGALL-LG--AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIG-----DV----SEFNS 108 (201)
T ss_dssp HTTSSTTCEEEEETCTTCHHHHHHHH-TT--CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEES-----CG----GGCCC
T ss_pred hcCCCCCCEEEECcCcchHHHHHHHH-cC--CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEEC-----ch----hhhCC
Confidence 45677789999999999998877665 22 358999999999999999987654311 11111 11 12356
Q ss_pred cccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 166 EHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 166 ~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+||+||++--.+....... ...+...+.. ++.+..+.
T Consensus 109 ~fD~Vi~nPP~~~~~~~~d-~~~l~~~~~~-~~~v~~ih 145 (201)
T d1wy7a1 109 RVDIVIMNPPFGSQRKHAD-RPFLLKAFEI-SDVVYSIH 145 (201)
T ss_dssp CCSEEEECCCCSSSSTTTT-HHHHHHHHHH-CSEEEEEE
T ss_pred cCcEEEEcCcccccccccc-HHHHHHHHhh-cccchhcc
Confidence 8999998744333221111 2234444543 45554443
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=1.3e-06 Score=82.80 Aligned_cols=73 Identities=19% Similarity=0.348 Sum_probs=54.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+.+++...|+ .+++++|.|+.+++.|+++++... ++.+++. ++...+ ...+||+
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~--~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~-----d~~~~~--~~~~fDl 178 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS-----DWFSAL--AGQQFAM 178 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECC-----STTGGG--TTCCEEE
T ss_pred cccceeeeehhhhHHHHHHHhhCCc--ceeeeccchhHHHhHHHHHHHHhCcccceeeec-----cccccc--CCCceeE
Confidence 5679999999999999999888763 589999999999999999886432 2323322 222222 3468999
Q ss_pred EEec
Q 012511 170 VIAS 173 (462)
Q Consensus 170 Vias 173 (462)
||++
T Consensus 179 IvsN 182 (274)
T d2b3ta1 179 IVSN 182 (274)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9997
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.40 E-value=6.9e-07 Score=81.21 Aligned_cols=104 Identities=9% Similarity=0.066 Sum_probs=69.7
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC--CCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~--~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
..|||||||+|..+..++...|+ ..++|||+++.|+..|...+.. ..|+.+++... ..+... ....++|.|+
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~--~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da--~~l~~~--~~~~~~~~i~ 106 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPD--INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG--SDLTDY--FEDGEIDRLY 106 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS--SCGGGT--SCTTCCSEEE
T ss_pred CeEEEEeccCCHHHHHHHHHCCC--CceEEEeccHHHHHHHHHhhhhhccccceeeecCH--HHHhhh--ccCCceehhc
Confidence 37999999999999999988874 5799999999999988776643 33444443321 122222 2456899998
Q ss_pred ecccccCCCCH--------HHHHHHHHHHHhcCCCEEEEEe
Q 012511 172 ASYVLGEVPSL--------QDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 172 as~vL~el~~~--------~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+.+.--+.... ..-+..+.++++ +||.|.|.-
T Consensus 107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lk-pgG~l~i~T 146 (204)
T d1yzha1 107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILP-ENGEIHFKT 146 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHSC-TTCEEEEEE
T ss_pred ccccccccchhhhhhhhhHHHHHHHHHHhCC-CCcEEEEEE
Confidence 77654443321 233445555554 799998853
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.39 E-value=9.6e-08 Score=88.28 Aligned_cols=100 Identities=14% Similarity=0.218 Sum_probs=67.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCC----CccEEEEEeCCHHHHHHHHHhhcC-------CCCCCceecchhHhhhhhcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPR----SLEKVNLVEPSQSMQRAGQSLMQG-------PKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~----~~~~v~~VD~S~~ml~~Ak~ll~~-------~~~~~~i~~~~~~~~l~~~l 160 (462)
+..+|||+|||+|..+-.++...+. ...+|++||.++++++.|++.+.. ..++.+++. +.....
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~-----d~~~~~ 154 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG-----DGRKGY 154 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES-----CGGGCC
T ss_pred CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec-----cccccc
Confidence 3479999999999877666665321 124899999999999999876532 122222222 122122
Q ss_pred CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 161 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
....+||.|+++.++.+++. .++++| ++||.||+.-
T Consensus 155 -~~~~~fD~Iiv~~a~~~~p~-----~l~~~L--k~gG~lV~pv 190 (223)
T d1r18a_ 155 -PPNAPYNAIHVGAAAPDTPT-----ELINQL--ASGGRLIVPV 190 (223)
T ss_dssp -GGGCSEEEEEECSCBSSCCH-----HHHHTE--EEEEEEEEEE
T ss_pred -ccccceeeEEEEeechhchH-----HHHHhc--CCCcEEEEEE
Confidence 23568999999999999972 234433 3799998854
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.38 E-value=4.3e-07 Score=83.33 Aligned_cols=98 Identities=15% Similarity=0.236 Sum_probs=70.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+..+|||+|||+|..+..++...+ .+|+++|.++.+.+.|++.+...+ ++.+++. +..... ....+||.
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~g---~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g-----d~~~g~-~~~~pfD~ 148 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIVK---TDVYTIERIPELVEFAKRNLERAGVKNVHVILG-----DGSKGF-PPKAPYDV 148 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHC---SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-----CGGGCC-GGGCCEEE
T ss_pred ccceEEEecCCCChhHHHHHHhhC---ceeEEEeccHHHHHHHHHHHHHcCCceeEEEEC-----ccccCC-cccCccee
Confidence 457999999999987766665433 469999999999999999887543 3333322 222222 24678999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|+++-++.++|. .++++| ++||.||+.-.
T Consensus 149 Iiv~~a~~~ip~-----~l~~qL--~~gGrLv~pv~ 177 (215)
T d1jg1a_ 149 IIVTAGAPKIPE-----PLIEQL--KIGGKLIIPVG 177 (215)
T ss_dssp EEECSBBSSCCH-----HHHHTE--EEEEEEEEEEC
T ss_pred EEeecccccCCH-----HHHHhc--CCCCEEEEEEc
Confidence 999999999973 255554 37999998653
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.33 E-value=2.3e-06 Score=79.83 Aligned_cols=109 Identities=13% Similarity=0.162 Sum_probs=74.0
Q ss_pred HHHHHHHHCCCCCC-CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhh
Q 012511 80 VLCEVRRRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 158 (462)
Q Consensus 80 vL~eL~~rlp~~~p-~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~ 158 (462)
...++.+..+.|.. .+|||||||+|..+.++.+.+|. .++++.|.. +.++.+ .....+..+.. ++-+
T Consensus 68 ~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~--l~~~v~Dlp-~vi~~~----~~~~ri~~~~g-----d~~~ 135 (244)
T d1fp1d2 68 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPL--IKGINFDLP-QVIENA----PPLSGIEHVGG-----DMFA 135 (244)
T ss_dssp HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEECH-HHHTTC----CCCTTEEEEEC-----CTTT
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCC--CeEEEecch-hhhhcc----CCCCCeEEecC-----Cccc
Confidence 34556666665544 79999999999999999999984 588999974 333211 11112222211 1212
Q ss_pred ccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 159 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 159 ~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
.+ ...|+|+++++||..+ +++...+++++.+. |||.|+|+|.
T Consensus 136 ~~----p~~D~~~l~~vLh~~~-de~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 136 SV----PQGDAMILKAVCHNWS-DEKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp CC----CCEEEEEEESSGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc----ccceEEEEehhhhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 22 2469999999999996 66677777777664 7999999995
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.31 E-value=3.1e-07 Score=88.93 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=62.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
++++|||+|||+|..+..+++. + ..+|++||.|+.+. .++++..... .+.++.. +.. .++....+||
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~-G--a~~V~avd~s~~~~-~a~~~~~~n~~~~~v~~~~~-----~~~-~~~~~~~~~D 102 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKA-G--ARKVIGIECSSISD-YAVKIVKANKLDHVVTIIKG-----KVE-EVELPVEKVD 102 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-T--CSEEEEEECSTTHH-HHHHHHHHTTCTTTEEEEES-----CTT-TCCCSSSCEE
T ss_pred CcCEEEEEecCCcHHHHHHHHh-C--CCEEEEEcCcHHHh-hhhhHHHHhCCccccceEec-----cHH-HcccccceeE
Confidence 4589999999999988777763 2 35899999998664 4444433221 1222221 111 2344567899
Q ss_pred EEEecccccCCCC---HHHHHHHHHHHHhcCCCEEE
Q 012511 169 LVIASYVLGEVPS---LQDRITIVRQLWDLTRDVLV 201 (462)
Q Consensus 169 LVias~vL~el~~---~~~r~~~i~~Lw~~~gG~LV 201 (462)
+|++..+.+.+.. .+..+..+.++++ |||.++
T Consensus 103 ~ivs~~~~~~l~~e~~~~~~l~~~~r~Lk-p~G~ii 137 (316)
T d1oria_ 103 IIISEWMGYCLFYESMLNTVLHARDKWLA-PDGLIF 137 (316)
T ss_dssp EEEECCCBBTBTBTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred EEeeeeeeeeeccHHHHHHHHHHHHhcCC-CCeEEE
Confidence 9998777666643 3455566677776 577654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.24 E-value=1.8e-06 Score=83.59 Aligned_cols=113 Identities=13% Similarity=0.080 Sum_probs=69.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||++||+|..+.+++. ...+|++||.|+.+++.|++.++..+ +..++... ..++...+.....+||+
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~----g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d--~~~~~~~~~~~~~~fD~ 218 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLAL----GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEAN--AFDLLRRLEKEGERFDL 218 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHH----HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESC--HHHHHHHHHHTTCCEEE
T ss_pred CCCeeeccCCCCcHHHHHHHh----cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeecc--HHHHhhhhHhhhcCCCE
Confidence 458999999999999888765 24689999999999999999876432 22233221 11221222334578999
Q ss_pred EEecccccCCC--CHHH----HHHHHHHHHhc--CCCEEEEEecCCCCc
Q 012511 170 VIASYVLGEVP--SLQD----RITIVRQLWDL--TRDVLVLVEPGTPQG 210 (462)
Q Consensus 170 Vias~vL~el~--~~~~----r~~~i~~Lw~~--~gG~LVlVEpGtp~G 210 (462)
||+.---.... .... -.+++...++. |||.||+..-.....
T Consensus 219 Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~ 267 (318)
T d1wxxa2 219 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT 267 (318)
T ss_dssp EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC
T ss_pred EEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccC
Confidence 99752211111 1111 12344455443 799999876543333
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.21 E-value=2.7e-06 Score=74.88 Aligned_cols=86 Identities=14% Similarity=0.083 Sum_probs=53.3
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l 160 (462)
++-|..+++ .+.+|||+|||+|....++... ..++++||.|+.+++.+++.++...-...+.... ...+....
T Consensus 32 f~~l~~~~~--~g~~vLDl~~G~G~~~i~a~~~----ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~-~d~~~~~~ 104 (171)
T d1ws6a1 32 FDYLRLRYP--RRGRFLDPFAGSGAVGLEAASE----GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALP-VEVFLPEA 104 (171)
T ss_dssp HHHHHHHCT--TCCEEEEETCSSCHHHHHHHHT----TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSC-HHHHHHHH
T ss_pred HHHhhcccc--CCCeEEEeccccchhhhhhhhc----cchhhhcccCHHHHhhhhHHHHhhccccceeeee-hhcccccc
Confidence 333444543 3579999999999988776652 3578999999999999998876432111111110 11111111
Q ss_pred CCCCCcccEEEec
Q 012511 161 SKSEREHDLVIAS 173 (462)
Q Consensus 161 ~~~~~~fDLVias 173 (462)
.....+||+|++.
T Consensus 105 ~~~~~~fD~If~D 117 (171)
T d1ws6a1 105 KAQGERFTVAFMA 117 (171)
T ss_dssp HHTTCCEEEEEEC
T ss_pred cccCCccceeEEc
Confidence 1244689999984
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.09 E-value=5.9e-06 Score=74.14 Aligned_cols=121 Identities=16% Similarity=0.127 Sum_probs=75.1
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchh-Hhhhhhc
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNS-IQALNKD 159 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~-~~~l~~~ 159 (462)
.|+...+.......|||++||+|..+.++.+.++. .+++++|.++.|++.|++.++.+. ++.+++..+. +..+...
T Consensus 13 ~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~--~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~ 90 (192)
T d1m6ya2 13 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG--CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 90 (192)
T ss_dssp HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCC--CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence 34444333334579999999999999999988863 689999999999999999987654 2333433221 1111111
Q ss_pred cCCCCCcccEEEecccc-----cCCC-CHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 160 ISKSEREHDLVIASYVL-----GEVP-SLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 160 l~~~~~~fDLVias~vL-----~el~-~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
....++|.|+.-..+ .... ........+....+. +||.+++|...
T Consensus 91 --~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 91 --LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp --TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred --cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 234678888665433 2111 111223344444443 79999998854
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.04 E-value=7.7e-06 Score=79.24 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=68.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
..+|||+|||+|..+.+++.. ...+|++||.|+.+++.|+++++..+- ..++... ..+....+.....+||+
T Consensus 146 g~~VLDl~~g~G~~si~~a~~---ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d--~~~~~~~~~~~~~~fD~ 220 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIA---GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGS--AFEEMEKLQKKGEKFDI 220 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC--HHHHHHHHHHTTCCEEE
T ss_pred CCeeecccCcccchhhhhhhc---CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeech--hhhhhHHHHhccCCCCc
Confidence 479999999999988877652 235899999999999999998864331 1122211 11111112234568999
Q ss_pred EEecc---cccCCCCHHHH----HHHHHHHHhc--CCCEEEEEecCCCCch
Q 012511 170 VIASY---VLGEVPSLQDR----ITIVRQLWDL--TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 170 Vias~---vL~el~~~~~r----~~~i~~Lw~~--~gG~LVlVEpGtp~Gf 211 (462)
||+.- ..+.- ..... ..++....+. +||.||+.........
T Consensus 221 Vi~DpP~~~~~~~-~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~ 270 (324)
T d2as0a2 221 VVLDPPAFVQHEK-DLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDL 270 (324)
T ss_dssp EEECCCCSCSSGG-GHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCH
T ss_pred hhcCCccccCCHH-HHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCH
Confidence 99742 21111 11111 2244444443 7999999876554444
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.03 E-value=3.6e-06 Score=72.49 Aligned_cols=49 Identities=24% Similarity=0.198 Sum_probs=40.5
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~ 141 (462)
.+++.+|||+|||+|.....++.. ...+|++||.++.+++.+++.++..
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~r---ga~~v~~ve~~~~a~~~~~~n~~~~ 60 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSR---GMSAAVLVEKNRKAQAIIQDNIIMT 60 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT---TCCEEEEECCCHHHHHHHHHHHHTT
T ss_pred hCCCCeEEEcCCccCHHHHHHHHh---Ccceeeeehhchhhhhhhhhhhhhc
Confidence 356789999999999988766542 2469999999999999999988754
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=4.6e-06 Score=77.93 Aligned_cols=83 Identities=11% Similarity=0.032 Sum_probs=54.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhcc-CCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDI-SKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l-~~~~~~f 167 (462)
...+|||+|||+|.....++..++ ..+++++|+|+.+++.|++.++...- +.+++.. ....+...+ ....++|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~--~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~-~~~~~~~~~~~~~~~~f 137 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLN--GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP-QKTLLMDALKEESEIIY 137 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC-TTCSSTTTSTTCCSCCB
T ss_pred ccceEEEeCCCchHHHHHHHHhCC--CccccceecCHHHHHHHHHHHHHhCCCcceeeeeec-cHHhhhhhhhhcccCce
Confidence 346999999999988888777665 36899999999999999998865321 1112111 001111111 1245689
Q ss_pred cEEEeccccc
Q 012511 168 DLVIASYVLG 177 (462)
Q Consensus 168 DLVias~vL~ 177 (462)
|+|||+-=..
T Consensus 138 D~ivsNPPY~ 147 (250)
T d2h00a1 138 DFCMCNPPFF 147 (250)
T ss_dssp SEEEECCCCC
T ss_pred eEEEecCccc
Confidence 9999985444
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=5.8e-06 Score=75.77 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=72.2
Q ss_pred HHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCcee--cchhHhh
Q 012511 78 YRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH--SYNSIQA 155 (462)
Q Consensus 78 ~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~--~~~~~~~ 155 (462)
-+.|..|.+- .+|++||++|||+|..++.++...++ ..+++.+|.++++.+.|+..++..+-...+. .-.....
T Consensus 48 g~lL~~L~~~---~~~k~vLEiGt~~GyStl~~a~al~~-~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~ 123 (219)
T d2avda1 48 AQLLANLARL---IQAKKALDLGTFTGYSALALALALPA-DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET 123 (219)
T ss_dssp HHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCT-TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred HHHHHHHHHc---cCCCeEEEEechhhHHHHHHHHhCCC-CceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhc
Confidence 3445555543 35799999999999888888877764 5799999999999999999886543222221 1011111
Q ss_pred hhhcc-CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 156 LNKDI-SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 156 l~~~l-~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
+...+ .....+||+|+..+-=. ....-.+.+..+++ +||.||+ +.-.
T Consensus 124 l~~~~~~~~~~~fD~ifiD~dk~---~y~~~~~~~~~lL~-~GGvii~-Dn~l 171 (219)
T d2avda1 124 LDELLAAGEAGTFDVAVVDADKE---NCSAYYERCLQLLR-PGGILAV-LRVL 171 (219)
T ss_dssp HHHHHHTTCTTCEEEEEECSCST---THHHHHHHHHHHEE-EEEEEEE-ECCS
T ss_pred chhhhhhcccCCccEEEEeCCHH---HHHHHHHHHHHHhc-CCcEEEE-eCCc
Confidence 21111 12356899999864211 12222333344444 4666654 5443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.94 E-value=1.9e-05 Score=71.95 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=60.2
Q ss_pred HHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHh
Q 012511 78 YRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQ 154 (462)
Q Consensus 78 ~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~ 154 (462)
-++|..+.+.. +|.+|||+|||+|..+..++..++ ...+++++|.++.+.+.|+..++..+- +.++... ...
T Consensus 45 G~lL~~lv~~~---kpk~ILEiGt~~G~Sti~la~al~-~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd-~~e 119 (214)
T d2cl5a1 45 GQIMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQ-PGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGA-SQD 119 (214)
T ss_dssp HHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTCC-TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC-HHH
T ss_pred HHHHHHHHHhh---CCCEEEEEccCchhHHHHHHHhCC-CccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecc-ccc
Confidence 34566655543 578999999999988888887775 357999999999999999988764331 2222221 111
Q ss_pred hhhhccC--CCCCcccEEEecc
Q 012511 155 ALNKDIS--KSEREHDLVIASY 174 (462)
Q Consensus 155 ~l~~~l~--~~~~~fDLVias~ 174 (462)
.+.. +. ....+||+|+.-+
T Consensus 120 ~l~~-l~~~~~~~~~D~ifiD~ 140 (214)
T d2cl5a1 120 LIPQ-LKKKYDVDTLDMVFLDH 140 (214)
T ss_dssp HGGG-HHHHSCCCCEEEEEECS
T ss_pred cccc-hhhcccccccceeeecc
Confidence 1111 11 2346799998763
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.93 E-value=4.1e-05 Score=73.41 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=50.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC--CCC--CCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKD--LPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~--~~~--~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
++.+|||+.||+|.++.+++. ...+|++||.|..+++.|++++.- ..+ +.++... -...+.. ......+|
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~----~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D-~~~~l~~-~~~~~~~f 205 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAA----AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICED-AMKFIQR-EERRGSTY 205 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHH----TTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSC-HHHHHHH-HHHHTCCB
T ss_pred CCCeEEEecCCCcHHHHHHHh----CCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCC-HHHhHHH-HhhcCCCC
Confidence 468999999999999888776 245899999999999999987752 221 2233221 1111211 11234689
Q ss_pred cEEEe
Q 012511 168 DLVIA 172 (462)
Q Consensus 168 DLVia 172 (462)
|+||+
T Consensus 206 D~Iil 210 (309)
T d2igta1 206 DIILT 210 (309)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99997
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.90 E-value=2.5e-05 Score=72.54 Aligned_cols=96 Identities=18% Similarity=0.322 Sum_probs=65.2
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
-.+|||||||+|..+.++.+.+|. .++++.|.. +.++.+ ....++.++.. ++-+ +...+|++++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~--l~~~v~Dlp-~vi~~~----~~~~rv~~~~g-----D~f~----~~p~aD~~~l 144 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPK--LKCIVFDRP-QVVENL----SGSNNLTYVGG-----DMFT----SIPNADAVLL 144 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTT--CEEEEEECH-HHHTTC----CCBTTEEEEEC-----CTTT----CCCCCSEEEE
T ss_pred ceEEEEecCCccHHHHHHHHhCCC--CeEEEecCH-HHHHhC----cccCceEEEec-----Cccc----CCCCCcEEEE
Confidence 368999999999999999999984 489999984 333221 11112222221 1211 1236899999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--CC---CEEEEEec
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDL--TR---DVLVLVEP 205 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~--~g---G~LVlVEp 205 (462)
+++||..+ +++...+++++.+. +| |.++|+|.
T Consensus 145 ~~vLHdw~-d~~~~~iL~~~~~al~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 145 KYILHNWT-DKDCLRILKKCKEAVTNDGKRGKVTIIDM 181 (244)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred EeecccCC-hHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence 99999996 66667777766553 45 78888885
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.90 E-value=6e-05 Score=69.69 Aligned_cols=108 Identities=12% Similarity=0.227 Sum_probs=71.6
Q ss_pred HHHHHHHCCCCC-CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 81 LCEVRRRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 81 L~eL~~rlp~~~-p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
...+....+.+. ..+|||||||+|..+.++++.+|+ .++++.|...- ++. ......+..+.. ++...
T Consensus 69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--l~~~v~Dlp~v-i~~----~~~~~r~~~~~~-----d~~~~ 136 (243)
T d1kyza2 69 MKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPT--IKGINFDLPHV-IED----APSYPGVEHVGG-----DMFVS 136 (243)
T ss_dssp HHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTT--SEEEEEECTTT-TTT----CCCCTTEEEEEC-----CTTTC
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCC--CeEEEcccHHh-hhh----cccCCceEEecc-----ccccc
Confidence 445555555444 478999999999999999999984 58999998643 211 111111112211 12222
Q ss_pred cCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 160 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
+| ..|+++..++||..+ .++...+++++.+. +||.++|+|.
T Consensus 137 ~P----~ad~~~l~~vlh~~~-d~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 137 IP----KADAVFMKWICHDWS-DEHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp CC----CCSCEECSSSSTTSC-HHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred CC----CcceEEEEEEeecCC-HHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 22 368889999999996 66667777777664 7999999885
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.76 E-value=5.1e-05 Score=71.44 Aligned_cols=74 Identities=9% Similarity=0.104 Sum_probs=51.5
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCC--ceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP--LIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~--~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+|||+|||+|..+.+++. ++ ..+|+++|.|+.+++.|+++++..+-.. .+... ++...++...++||+|
T Consensus 111 ~~~vld~g~GsG~i~~~la~-~~--~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~----~~~~~~~~~~~~fDlI 183 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAK-FS--DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG----EFLEPFKEKFASIEMI 183 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHH-HS--SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES----STTGGGGGGTTTCCEE
T ss_pred ccEEEEeeeeeehhhhhhhh-cc--cceeeechhhhhHHHHHHHHHHHcCCCceeEEeec----ccccccccccCcccEE
Confidence 46899999999998888775 44 4589999999999999999886543211 11111 1211222234689999
Q ss_pred Eec
Q 012511 171 IAS 173 (462)
Q Consensus 171 ias 173 (462)
|++
T Consensus 184 VsN 186 (271)
T d1nv8a_ 184 LSN 186 (271)
T ss_dssp EEC
T ss_pred EEc
Confidence 997
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.72 E-value=6.3e-05 Score=72.43 Aligned_cols=115 Identities=12% Similarity=0.097 Sum_probs=68.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
++.+|||+.||+|..+.+++.. ...+|++||.|+.+++.|++.++... +..++... -...+. .+.....+|
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~---ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d-~~~~l~-~~~~~~~~f 218 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMG---GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMD-VFDYFK-YARRHHLTY 218 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT---TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESC-HHHHHH-HHHHTTCCE
T ss_pred CCCceeecCCCCcHHHHHHHhC---CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEcc-HHHHHH-HHHhhcCCC
Confidence 3579999999999998776652 34689999999999999999875322 11223221 111121 112234689
Q ss_pred cEEEec---cc--ccCCCCHH-HHHHHHHHHHhc--CCCEEEEEecCCCCch
Q 012511 168 DLVIAS---YV--LGEVPSLQ-DRITIVRQLWDL--TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 168 DLVias---~v--L~el~~~~-~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf 211 (462)
|+||+- +. -..+.+.. .-.+++...++. +||.|++.-.......
T Consensus 219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~ 270 (317)
T d2b78a2 219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTV 270 (317)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCH
T ss_pred CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCH
Confidence 999973 21 11222221 223455555443 7999998766444443
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.70 E-value=4.3e-05 Score=73.51 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=76.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCC---CccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~---~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+.+|||.|||+|..+.++.+.+.. ....++|+|+++.+++.|+..+.-.. .....+.. .+. .....+|
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d----~~~---~~~~~~f 189 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQD----GLA---NLLVDPV 189 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESC----TTS---CCCCCCE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccc----ccc---ccccccc
Confidence 4579999999999999888765532 23479999999999999987654211 11111111 111 1235689
Q ss_pred cEEEecccccCCCCHHH---------------HHHHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHHHHHH
Q 012511 168 DLVIASYVLGEVPSLQD---------------RITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHILW 223 (462)
Q Consensus 168 DLVias~vL~el~~~~~---------------r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~~lL~ 223 (462)
|+||++--......... -..++...++. ++|.+++|=|.+-.....-..+|..|++
T Consensus 190 D~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~ 262 (328)
T d2f8la1 190 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKK 262 (328)
T ss_dssp EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHH
T ss_pred cccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHh
Confidence 99999844322211111 11245555554 7999988887653222334556998885
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=9.5e-05 Score=65.31 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=50.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+|||++||+|.....+... ....|++||.|..+++.+++.+.... +...+... ....+.....+||+|
T Consensus 44 ~~~vLDlfaGsG~~giealsr---Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d-----~~~~l~~~~~~fDlI 115 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSR---YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSN-----AMSFLAQKGTPHNIV 115 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSC-----HHHHHSSCCCCEEEE
T ss_pred hhhhhhhhccccceeeeEEec---CcceeEEEEEeechhhHHHHHHhhccccceeeeeec-----ccccccccccccCEE
Confidence 479999999999998866652 34689999999999999998876432 22222211 111122345689999
Q ss_pred Eec
Q 012511 171 IAS 173 (462)
Q Consensus 171 ias 173 (462)
++.
T Consensus 116 f~D 118 (183)
T d2fpoa1 116 FVD 118 (183)
T ss_dssp EEC
T ss_pred EEc
Confidence 985
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.68 E-value=4.6e-05 Score=71.36 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=60.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
+.+|||+|||+|..+..++.. + ..+|+++|.|+.+++.+++.++..+-...+... ..+.. .+. ....||.|++
T Consensus 108 g~~VlD~~aG~G~~~l~~a~~-~--~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~--~~D~~-~~~-~~~~~D~Ii~ 180 (260)
T d2frna1 108 DELVVDMFAGIGHLSLPIAVY-G--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY--NMDNR-DFP-GENIADRILM 180 (260)
T ss_dssp TCEEEETTCTTTTTHHHHHHH-T--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE--CSCTT-TCC-CCSCEEEEEE
T ss_pred ccEEEECcceEcHHHHHHHHh-C--CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEE--EcchH-Hhc-cCCCCCEEEE
Confidence 579999999999988877764 2 358999999999999999887643211112110 01121 122 3567999987
Q ss_pred cccccCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
..- +...+.+....++++ +||.|.+-
T Consensus 181 ~~p----~~~~~~l~~a~~~l~-~gG~lh~~ 206 (260)
T d2frna1 181 GYV----VRTHEFIPKALSIAK-DGAIIHYH 206 (260)
T ss_dssp CCC----SSGGGGHHHHHHHEE-EEEEEEEE
T ss_pred CCC----CchHHHHHHHHhhcC-CCCEEEEE
Confidence 532 222222222333443 68988653
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.66 E-value=6.5e-05 Score=68.91 Aligned_cols=106 Identities=13% Similarity=0.119 Sum_probs=66.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCcee--cchhHhhhhhcc--CCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH--SYNSIQALNKDI--SKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~--~~~~~~~l~~~l--~~~~~~f 167 (462)
+|++||++|+++|..+..++..+++ ..+++.+|.+++..+.|++.++..+-...+. .......+..-+ ....++|
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~-~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPE-DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCT-TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred CCCcEEEecchhhhhHHHHHhhCCC-CcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 4789999999999888888877874 5799999999999999999887543222121 111111122111 1135689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|+|+.-.-= .....-.+.+..+++ +||.+|+
T Consensus 138 D~iFiDa~k---~~y~~~~e~~~~ll~-~gGiii~ 168 (227)
T d1susa1 138 DFIFVDADK---DNYLNYHKRLIDLVK-VGGVIGY 168 (227)
T ss_dssp SEEEECSCS---TTHHHHHHHHHHHBC-TTCCEEE
T ss_pred eEEEeccch---hhhHHHHHHHHhhcC-CCcEEEE
Confidence 999975311 122233334445554 5776665
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.54 E-value=3.8e-05 Score=73.89 Aligned_cols=103 Identities=19% Similarity=0.256 Sum_probs=64.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC----CCCCceec--chhHhhhhhccCCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP----KDLPLIHS--YNSIQALNKDISKSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~----~~~~~i~~--~~~~~~l~~~l~~~~~ 165 (462)
.|++||.+|.|.|..+..+.... ...++++||+++.+++.|++.+... .+-+.+.. .+-...+. ....
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~----~~~~ 150 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHP--TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE----RTEE 150 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST--TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH----HCCC
T ss_pred CcceEEEeCCCchHHHHHHHhcC--CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhh----hcCC
Confidence 57899999999999888877643 3579999999999999999876321 11122211 11112222 2356
Q ss_pred cccEEEeccc--cc------CCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 166 EHDLVIASYV--LG------EVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 166 ~fDLVias~v--L~------el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
+||+||+-.. .. .|-+ .+-.+.+++.++ +||+||+
T Consensus 151 ~yDvIi~D~~dp~~~~~~~~~L~t-~eF~~~~~~~L~-p~Gvlv~ 193 (312)
T d1uira_ 151 RYDVVIIDLTDPVGEDNPARLLYT-VEFYRLVKAHLN-PGGVMGM 193 (312)
T ss_dssp CEEEEEEECCCCBSTTCGGGGGSS-HHHHHHHHHTEE-EEEEEEE
T ss_pred cccEEEEeCCCcccccchhhhhhh-HHHHHHHHHhcC-CCceEEE
Confidence 8999996431 11 1221 234455666665 6898876
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.40 E-value=0.00026 Score=65.02 Aligned_cols=65 Identities=9% Similarity=0.200 Sum_probs=49.1
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCcee
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH 148 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~ 148 (462)
++..+...+.-....+|||+|||+|..+..+.+. ..++++||.++.|.+..++.+.+..++.+++
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~----~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~ 73 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR----CNFVTAIEIDHKLCKTTENKLVDHDNFQVLN 73 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH----SSEEEEECSCHHHHHHHHHHTTTCCSEEEEC
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC----cCceEEEeeccchHHHHHHHhhcccchhhhh
Confidence 3444444443335689999999999999998874 4589999999999999998876655555444
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.31 E-value=0.0003 Score=67.25 Aligned_cols=107 Identities=19% Similarity=0.246 Sum_probs=64.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.|++||-+|.|.|..+..+.... ...++++||+++.+++.+++.+..... -|.+... .++-...+.....+||
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~--~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~--i~Da~~~l~~~~~~yD 181 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHE--SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF--CGDGFEFLKNHKNEFD 181 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCT--TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEE--CSCHHHHHHHCTTCEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcC--CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEE--EchHHHHHHhCCCCCC
Confidence 57899999999999998887643 367999999999999999987753211 1222110 0111111222456899
Q ss_pred EEEecccccCCCC----HHHHHHHHHHHHhcCCCEEEEE
Q 012511 169 LVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 169 LVias~vL~el~~----~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
+||+--.-..-+. ..+-.+.+++.++ ++|.+|.=
T Consensus 182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~-~~Gi~v~q 219 (312)
T d2b2ca1 182 VIITDSSDPVGPAESLFGQSYYELLRDALK-EDGILSSQ 219 (312)
T ss_dssp EEEECCC-------------HHHHHHHHEE-EEEEEEEE
T ss_pred EEEEcCCCCCCcchhhhhHHHHHHHHhhcC-CCcEEEEe
Confidence 9997532211010 1123445566655 68888875
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.25 E-value=0.00019 Score=63.39 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=51.5
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCc
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSERE 166 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~ 166 (462)
.+...+|||++||+|.....++.. ...+|++||.|..+++.+++.++.... ...+... ....+.. +.....+
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~sr---Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D-~~~~l~~-~~~~~~~ 113 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSR---GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMD-ANRALEQ-FYEEKLQ 113 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC-HHHHHHH-HHHTTCC
T ss_pred hcCCCEEEEcccccccccceeeec---chhHHHHHHHHHHHHHHHHHHhhhhhccccccccccc-chhhhhh-hcccCCC
Confidence 345689999999999988866652 346899999999999999988754321 1122211 1111211 1123458
Q ss_pred ccEEEec
Q 012511 167 HDLVIAS 173 (462)
Q Consensus 167 fDLVias 173 (462)
||+|++-
T Consensus 114 fDlIflD 120 (182)
T d2fhpa1 114 FDLVLLD 120 (182)
T ss_dssp EEEEEEC
T ss_pred cceEEec
Confidence 9999874
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.24 E-value=0.00029 Score=66.95 Aligned_cols=106 Identities=21% Similarity=0.217 Sum_probs=65.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.|++||-+|.|.|..+..+.... ...++++||+++.+++.+++.+.... +-+.+... .++....+.....+||
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~--~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~--~~Da~~~l~~~~~~yD 164 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHD--SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIV--IANGAEYVRKFKNEFD 164 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST--TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE--ESCHHHHGGGCSSCEE
T ss_pred CCceEEEecCCchHHHHHHHhcC--CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEE--hhhHHHHHhcCCCCCC
Confidence 57999999999999888777644 35789999999999999998663211 11222110 0111112223456899
Q ss_pred EEEecccc------cCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 169 LVIASYVL------GEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 169 LVias~vL------~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
+||+-..- ..|- ..+-.+.+++.++ ++|.+|+=
T Consensus 165 vIi~D~~dp~~~~~~~L~-t~efy~~~~~~L~-~~Gi~v~q 203 (295)
T d1inla_ 165 VIIIDSTDPTAGQGGHLF-TEEFYQACYDALK-EDGVFSAE 203 (295)
T ss_dssp EEEEEC----------CC-SHHHHHHHHHHEE-EEEEEEEE
T ss_pred EEEEcCCCCCcCchhhhc-cHHHHHHHHhhcC-CCcEEEEe
Confidence 99974321 2232 2344556666665 68888764
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.24 E-value=0.00021 Score=67.30 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=63.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---------CCCceec--chhHhhhhhcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---------DLPLIHS--YNSIQALNKDI 160 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---------~~~~i~~--~~~~~~l~~~l 160 (462)
.|.+||-+|+|.|..+..+.. ++ ..++++||+++.+++.|++.+.-.. .-+.+.. .+-...+.
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~-~~--~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~--- 145 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQ-HD--VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK--- 145 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTT-SC--CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH---
T ss_pred CCceEEEecCCchHHHHHHHH-hC--CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh---
Confidence 579999999999998888775 44 3589999999999999998764221 1122211 01111121
Q ss_pred CCCCCcccEEEecccc-----cCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 161 SKSEREHDLVIASYVL-----GEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 161 ~~~~~~fDLVias~vL-----~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
..++||+||+-..- ..|- ..+-.+.+++.++ ++|++|+=
T Consensus 146 --~~~~yDvIi~D~~~~~~~~~~L~-t~eF~~~~~~~L~-~~Gv~v~q 189 (276)
T d1mjfa_ 146 --NNRGFDVIIADSTDPVGPAKVLF-SEEFYRYVYDALN-NPGIYVTQ 189 (276)
T ss_dssp --HCCCEEEEEEECCCCC-----TT-SHHHHHHHHHHEE-EEEEEEEE
T ss_pred --ccCCCCEEEEeCCCCCCCccccc-CHHHHHhhHhhcC-CCceEEEe
Confidence 24689999974322 1121 1234455666665 68988764
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.22 E-value=0.00015 Score=64.87 Aligned_cols=118 Identities=19% Similarity=0.075 Sum_probs=68.5
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+.+|||.|||+|.++.++.+..+. ...++++|.++.++..++. ...+... .+. .....+||+|
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~~~~~-~~~i~g~ei~~~~~~~~~~-------~~~~~~~----~~~---~~~~~~fd~i 82 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFREAHGT-AYRFVGVEIDPKALDLPPW-------AEGILAD----FLL---WEPGEAFDLI 82 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCS-CSEEEEEESCTTTCCCCTT-------EEEEESC----GGG---CCCSSCEEEE
T ss_pred CCcCEEEECCCchHHHHHHHHHhccc-cceEEeeecCHHHHhhccc-------ceeeeee----hhc---ccccccccee
Confidence 34579999999999999888876653 5689999999875433211 0111111 011 1234689999
Q ss_pred EecccccCCCC---------HH-----------------HHHHHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 171 IASYVLGEVPS---------LQ-----------------DRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 171 ias~vL~el~~---------~~-----------------~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
+++.-...... .. .-..++...++. +||.+++|=|.+-.....-...|+.|+
T Consensus 83 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~ 162 (223)
T d2ih2a1 83 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLA 162 (223)
T ss_dssp EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHH
T ss_pred cccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHH
Confidence 98755432110 00 001223333332 689999987755332223356688887
Q ss_pred H
Q 012511 223 W 223 (462)
Q Consensus 223 ~ 223 (462)
+
T Consensus 163 ~ 163 (223)
T d2ih2a1 163 R 163 (223)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.0004 Score=67.26 Aligned_cols=135 Identities=16% Similarity=0.132 Sum_probs=79.4
Q ss_pred cCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC--CCCCCc
Q 012511 69 RMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKDLPL 146 (462)
Q Consensus 69 r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~--~~~~~~ 146 (462)
++-.|-.....++..+..-+...+..+|||+-||.|+++..+++ ...+|++||.++++++.|+..++. ..+..+
T Consensus 189 FfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~----~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~ 264 (358)
T d1uwva2 189 FIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT----QAASVVGVEGVPALVEKGQQNARLNGLQNVTF 264 (358)
T ss_dssp CCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHT----TSSEEEEEESCHHHHHHHHHHHHHTTCCSEEE
T ss_pred hhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccc----cccEEEeccCcHHHHHHHHHhHHhccccccee
Confidence 34445555555555555554444557999999999999999886 456899999999999999987653 233333
Q ss_pred eecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 147 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 147 i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
+... ..............+|+||.-=--..+ .+.+..+.+..-..+|-|- -.|. .-|||+-
T Consensus 265 ~~~~--~~~~~~~~~~~~~~~d~vilDPPR~G~------~~~~~~l~~~~~~~ivYVS-Cnp~-----TlaRDl~ 325 (358)
T d1uwva2 265 YHEN--LEEDVTKQPWAKNGFDKVLLDPARAGA------AGVMQQIIKLEPIRIVYVS-CNPA-----TLARDSE 325 (358)
T ss_dssp EECC--TTSCCSSSGGGTTCCSEEEECCCTTCC------HHHHHHHHHHCCSEEEEEE-SCHH-----HHHHHHH
T ss_pred eecc--hhhhhhhhhhhhccCceEEeCCCCccH------HHHHHHHHHcCCCEEEEEe-CCHH-----HHHHHHH
Confidence 3211 000000111234578998865322222 1345556554335666664 2332 3467773
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.00 E-value=0.0016 Score=61.37 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=66.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC---CCCCceec--chhHhhhhhccCCCCCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---KDLPLIHS--YNSIQALNKDISKSERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~---~~~~~i~~--~~~~~~l~~~l~~~~~~ 166 (462)
.|++||=+|.|.|..+..+....+ ..++++||+++++++.+++-+... ..-+.+.. .+-...+. ....++
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~--~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~---~~~~~~ 154 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHAS--IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK---NAAEGS 154 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTT--CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH---TSCTTC
T ss_pred CCcceEEecCCchHHHHHHHhccc--ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHh---hccccC
Confidence 579999999999999998887543 578999999999999999876321 01122111 01111121 123468
Q ss_pred ccEEEecccc-----cCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 167 HDLVIASYVL-----GEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 167 fDLVias~vL-----~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
||+||+--.= ..|- ..+-.+.+++.++ ++|.+|+=-
T Consensus 155 yDvIi~D~~dp~~~~~~L~-t~eF~~~~~~~L~-~~Gi~v~q~ 195 (290)
T d1xj5a_ 155 YDAVIVDSSDPIGPAKELF-EKPFFQSVARALR-PGGVVCTQA 195 (290)
T ss_dssp EEEEEECCCCTTSGGGGGG-SHHHHHHHHHHEE-EEEEEEEEC
T ss_pred ccEEEEcCCCCCCcchhhC-CHHHHHHHHHhcC-CCcEEEEec
Confidence 9999964321 1121 1233455666665 689888754
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.99 E-value=0.0013 Score=61.58 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=68.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC---CCCCCceec--chhHhhhhhccCCCCCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG---PKDLPLIHS--YNSIQALNKDISKSERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~---~~~~~~i~~--~~~~~~l~~~l~~~~~~ 166 (462)
.|.+||-+|.|.|..+..+.... ...++++||+++++++.|++.+.. .-+-|.+.. .+-...+ .....+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~--~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l----~~~~~~ 148 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHP--SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHI----AKSENQ 148 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT--TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHH----HTCCSC
T ss_pred CcceEEecCCCCcHHHHHHHhcC--CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHH----hhcCCC
Confidence 57899999999999888777643 357999999999999999987631 111232221 1111222 224568
Q ss_pred ccEEEecccc-----cCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 167 HDLVIASYVL-----GEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 167 fDLVias~vL-----~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
||+||+-..- ..|- ..+-.+.+++.++ ++|.+|.= -++|.
T Consensus 149 yDvIi~D~~~p~~~~~~L~-t~eFy~~~~~~L~-~~Gv~v~q-~~s~~ 193 (274)
T d1iy9a_ 149 YDVIMVDSTEPVGPAVNLF-TKGFYAGIAKALK-EDGIFVAQ-TDNPW 193 (274)
T ss_dssp EEEEEESCSSCCSCCCCCS-TTHHHHHHHHHEE-EEEEEEEE-CCCTT
T ss_pred CCEEEEcCCCCCCcchhhc-cHHHHHHHHhhcC-CCceEEEe-cCCcc
Confidence 9999965321 1122 2344556666665 58888864 34443
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.0013 Score=57.75 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=35.4
Q ss_pred HHHHHHHCCCCCC-CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCH
Q 012511 81 LCEVRRRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 128 (462)
Q Consensus 81 L~eL~~rlp~~~p-~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~ 128 (462)
|.||.++..-+++ .+|||+||+||..+-.+.+..+ ....++++|..+
T Consensus 10 L~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~-~~~~v~~vDl~~ 57 (180)
T d1ej0a_ 10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIG-GKGRIIACDLLP 57 (180)
T ss_dssp HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHC-TTCEEEEEESSC
T ss_pred HHHHHHHhCccCCCCeEEEEeccCCcceEEEEeecc-ccceEEEeeccc
Confidence 5566666654544 6999999999999987777554 346899999765
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.00088 Score=63.15 Aligned_cols=104 Identities=14% Similarity=0.235 Sum_probs=64.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC---CCCCceec--chhHhhhhhccCCCCCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---KDLPLIHS--YNSIQALNKDISKSERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~---~~~~~i~~--~~~~~~l~~~l~~~~~~ 166 (462)
.|++||-+|.|.|..+..+.+..+ ..++++||+++++++.|++-+... -.-|.+.. .+-...+. ...++
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~--~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~----~~~~~ 151 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPS--VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK----QNQDA 151 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTT--CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH----TCSSC
T ss_pred CcCeEEEeCCCchHHHHHHHHcCC--cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHh----cCCCC
Confidence 579999999999998888876443 579999999999999999876321 01122211 11112222 24568
Q ss_pred ccEEEecccccCCCC-----HHHHHHHHHHHHhcCCCEEEEE
Q 012511 167 HDLVIASYVLGEVPS-----LQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 167 fDLVias~vL~el~~-----~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
||+||+-.. ..... ..+-.+.+++.++ ++|.+|+=
T Consensus 152 yDvIi~D~~-~p~~~~~~L~t~eF~~~~~~~L~-~~Gi~v~q 191 (285)
T d2o07a1 152 FDVIITDSS-DPMGPAESLFKESYYQLMKTALK-EDGVLCCQ 191 (285)
T ss_dssp EEEEEEECC------------CHHHHHHHHHEE-EEEEEEEE
T ss_pred CCEEEEcCC-CCCCcccccccHHHHHHHHHhcC-CCCeEEEe
Confidence 999997532 11111 1123455666665 68988874
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=96.88 E-value=4.1e-05 Score=71.08 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=55.8
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l 160 (462)
+..+.+.+......+|||+|||+|+.+..+++. ..++++||.++.|++.+++.+....++.+++.. .+. +
T Consensus 18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~----~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D----~l~--~ 87 (245)
T d1yuba_ 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI----SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQD----ILQ--F 87 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH----SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSC----CTT--T
T ss_pred HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh----cCceeEeeecccchhhhhhhhhhccchhhhhhh----hhc--c
Confidence 344444443334579999999999999888874 358999999999988776665544444344322 111 2
Q ss_pred CCCCCcccEEEecccccCCC
Q 012511 161 SKSEREHDLVIASYVLGEVP 180 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~ 180 (462)
+.....+ .+|+++.--++.
T Consensus 88 ~~~~~~~-~~vv~NLPY~Is 106 (245)
T d1yuba_ 88 QFPNKQR-YKIVGNIPYHLS 106 (245)
T ss_dssp TCCCSSE-EEEEEECCSSSC
T ss_pred cccccee-eeEeeeeehhhh
Confidence 2223333 445566666775
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.81 E-value=0.0025 Score=55.72 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=61.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC--Cc-eecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL--PL-IHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~--~~-i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
..+|||+-||+|++...+... ....++.||.|...++..++.++..... .. +........+. ......+||+
T Consensus 44 ~~~vLDlFaGsG~~glEalSR---GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~--~~~~~~~fDl 118 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSR---QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK--QPQNQPHFDV 118 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT--SCCSSCCEEE
T ss_pred cceEeecccCccceeeeeeee---cceeeEEeecccchhhhHhhHHhhhccccccccccccccccccc--ccccCCcccE
Confidence 469999999999988876652 3569999999999999999887654311 11 11111111111 1123457999
Q ss_pred EEec--ccccCCCCHHHHHHHHHHHHhc---CCCEEEEEecC
Q 012511 170 VIAS--YVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPG 206 (462)
Q Consensus 170 Vias--~vL~el~~~~~r~~~i~~Lw~~---~gG~LVlVEpG 206 (462)
|++- |.. .....++..+.+. ..+.+|++|..
T Consensus 119 IFlDPPY~~------~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 119 VFLDPPFHF------NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp EEECCCSSS------CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred EEechhHhh------hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 9874 321 1112244444332 24667777854
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.0022 Score=57.49 Aligned_cols=101 Identities=20% Similarity=0.246 Sum_probs=61.0
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcc
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+.+.+|||+|||.|--...++-.+| ..++++||.+..=....+......+ ++..++.. .. .+ ....+|
T Consensus 63 ~~~~~~ilDiGsGaG~PGi~laI~~p--~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R-----~E-~~-~~~~~f 133 (207)
T d1jsxa_ 63 YLQGERFIDVGTGPGLPGIPLSIVRP--EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSR-----VE-EF-PSEPPF 133 (207)
T ss_dssp GCCSSEEEEETCTTTTTHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECC-----TT-TS-CCCSCE
T ss_pred hhcCCceeeeeccCCceeeehhhhcc--cceEEEEecchHHHHHHHHHHHHcCCcceeeeccc-----hh-hh-cccccc
Confidence 34567999999999843333333465 3689999999987777776655432 33322211 11 11 134589
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|+|++-- +. +....+.+...+++ ++|.+++.-
T Consensus 134 D~V~sRA-~~---~~~~ll~~~~~~l~-~~g~~~~~K 165 (207)
T d1jsxa_ 134 DGVISRA-FA---SLNDMVSWCHHLPG-EQGRFYALK 165 (207)
T ss_dssp EEEECSC-SS---SHHHHHHHHTTSEE-EEEEEEEEE
T ss_pred ceehhhh-hc---CHHHHHHHHHHhcC-CCcEEEEEC
Confidence 9987643 23 34445555555554 588888754
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.0028 Score=59.30 Aligned_cols=58 Identities=22% Similarity=0.231 Sum_probs=44.6
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~ 141 (462)
++..+...........||++|+|+|+.+.++.+. ..++++||.++.+....++.+.+.
T Consensus 9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~----~~~v~aiE~D~~l~~~L~~~~~~~ 66 (278)
T d1zq9a1 9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK----AKKVVACELDPRLVAELHKRVQGT 66 (278)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH----SSEEEEEESCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc----CCcEEEEEEccchhHHHHHHHhhh
Confidence 3444444443334579999999999999998874 458999999999999998887653
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.50 E-value=0.004 Score=54.55 Aligned_cols=116 Identities=11% Similarity=0.069 Sum_probs=68.0
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l 160 (462)
|.|+...+....+..++|..+|.|.-+.++.+. ..+|+++|..+.++..|+.+.. .+..+++..+. ++...+
T Consensus 7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~----~~~viaiD~D~~ai~~a~~~~~--~~~~~~~~~f~--~~~~~l 78 (182)
T d1wg8a2 7 YQEALDLLAVRPGGVYVDATLGGAGHARGILER----GGRVIGLDQDPEAVARAKGLHL--PGLTVVQGNFR--HLKRHL 78 (182)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHTCC--TTEEEEESCGG--GHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc----cCcEEEEhhhhhHHHHHhhccc--cceeEeehHHH--HHHHHH
Confidence 445544443345679999999999888888773 4589999999999999987643 23444443322 222212
Q ss_pred C-CCCCcccEEEecccccC--CCCHH-------HHHHHHHHHHhcCCCEEEEEec
Q 012511 161 S-KSEREHDLVIASYVLGE--VPSLQ-------DRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 161 ~-~~~~~fDLVias~vL~e--l~~~~-------~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
+ ...+.+|.|++-.-+.. +.++. ..+.....+++ +||.++++..
T Consensus 79 ~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk-~gg~~~ii~f 132 (182)
T d1wg8a2 79 AALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLA-PGGRLVVIAF 132 (182)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred HHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhC-CCCeEEEEec
Confidence 1 23456788876433221 11111 11222223333 6999998875
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.00087 Score=62.08 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=37.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
....||++|||+|+.+..+++ ...+|++||.++.|.+..+.....
T Consensus 21 ~~d~vlEIGpG~G~LT~~Ll~----~~~~v~aiEiD~~l~~~L~~~~~~ 65 (252)
T d1qyra_ 21 KGQAMVEIGPGLAALTEPVGE----RLDQLTVIELDRDLAARLQTHPFL 65 (252)
T ss_dssp TTCCEEEECCTTTTTHHHHHT----TCSCEEEECCCHHHHHHHHTCTTT
T ss_pred CCCEEEEECCCchHHHHHHHc----cCCceEEEEeccchhHHHHHHhhh
Confidence 457999999999999999887 346899999999999988765543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.25 E-value=0.011 Score=53.78 Aligned_cols=118 Identities=14% Similarity=0.221 Sum_probs=69.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
...+|+|+|+|.|--...++=.+| ..+++.||.+..-....+...... .+...++.. ...+... .....+||+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p--~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R--~E~~~~~-~~~~~~~D~ 144 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFP--HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDR--AETFGQR-KDVRESYDI 144 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESC--HHHHTTC-TTTTTCEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCC--CccceeecchHHHHHHHHHHHHHhCCCCcEEEeeh--hhhcccc-ccccccceE
Confidence 357999999998843333333465 368999999998766665554432 233333321 2223211 123468999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
|++- .+. +....+.+...+.+ ++|.+++.-- . ..-+-|.+++..+
T Consensus 145 v~sR-Ava---~l~~ll~~~~~~l~-~~g~~i~~KG-~-~~~~El~~a~~~~ 189 (239)
T d1xdza_ 145 VTAR-AVA---RLSVLSELCLPLVK-KNGLFVALKA-A-SAEEELNAGKKAI 189 (239)
T ss_dssp EEEE-CCS---CHHHHHHHHGGGEE-EEEEEEEEEC-C--CHHHHHHHHHHH
T ss_pred EEEh-hhh---CHHHHHHHHhhhcc-cCCEEEEECC-C-ChHHHHHHHHHHH
Confidence 9985 223 34555667777766 4888877663 2 3445566666654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=95.48 E-value=0.018 Score=56.63 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=73.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCC-----------ccEEEEEeCCHHHHHHHHHhh--cCCC--CCCceecchhHhhh
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRS-----------LEKVNLVEPSQSMQRAGQSLM--QGPK--DLPLIHSYNSIQAL 156 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~-----------~~~v~~VD~S~~ml~~Ak~ll--~~~~--~~~~i~~~~~~~~l 156 (462)
...+|||-.||+|.++.++.+.+... ...+.++|.++.+..+|+..+ .+.. ........ .+
T Consensus 162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d----~l 237 (425)
T d2okca1 162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCED----SL 237 (425)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECC----TT
T ss_pred ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCc----hh
Confidence 45799999999999998887765321 135899999999999887654 2221 11112111 11
Q ss_pred hhccCCCCCcccEEEecccccCCCC--------------HHHHHHHHHHHHhc--CCCEEEEEecCCC--CchHHHHHHH
Q 012511 157 NKDISKSEREHDLVIASYVLGEVPS--------------LQDRITIVRQLWDL--TRDVLVLVEPGTP--QGSSIISQMR 218 (462)
Q Consensus 157 ~~~l~~~~~~fDLVias~vL~el~~--------------~~~r~~~i~~Lw~~--~gG~LVlVEpGtp--~Gf~~I~~aR 218 (462)
. .....+||+||++-=.+.... ...-..++..+++. +||.+++|=|... .+ ..-..+|
T Consensus 238 ~---~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~-~~~~~iR 313 (425)
T d2okca1 238 E---KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEA-GAGETIR 313 (425)
T ss_dssp T---SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCS-THHHHHH
T ss_pred h---hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhh-hhHHHHH
Confidence 1 123568999999744322110 01112344444443 6898888877431 22 1235679
Q ss_pred HHHHH
Q 012511 219 SHILW 223 (462)
Q Consensus 219 ~~lL~ 223 (462)
+.|++
T Consensus 314 ~~Ll~ 318 (425)
T d2okca1 314 KRLLQ 318 (425)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99985
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.027 Score=56.99 Aligned_cols=129 Identities=13% Similarity=0.128 Sum_probs=72.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCC----------------ccEEEEEeCCHHHHHHHHHhh--cCCCCCCceecch-h
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRS----------------LEKVNLVEPSQSMQRAGQSLM--QGPKDLPLIHSYN-S 152 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~----------------~~~v~~VD~S~~ml~~Ak~ll--~~~~~~~~i~~~~-~ 152 (462)
...+|+|-.||+|.++.++.+.+... ...+.++|.++.+..+|+..+ .+.. ....+... .
T Consensus 164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~-~~i~~~~~~~ 242 (524)
T d2ar0a1 164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIR 242 (524)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC-CBGGGTBSEE
T ss_pred cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc-ccccccchhh
Confidence 34699999999999998877654221 125899999999999888644 2211 11111000 0
Q ss_pred Hh-hhhhccCCCCCcccEEEecccccCCC-----------CHHHHHHHHHHHHhc--CCCEEEEEecCCC--CchHHHHH
Q 012511 153 IQ-ALNKDISKSEREHDLVIASYVLGEVP-----------SLQDRITIVRQLWDL--TRDVLVLVEPGTP--QGSSIISQ 216 (462)
Q Consensus 153 ~~-~l~~~l~~~~~~fDLVias~vL~el~-----------~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp--~Gf~~I~~ 216 (462)
.. .+... .....+||+||++-=.+.-. ....-..++..+++. +||.+++|=|... .|.. =..
T Consensus 243 ~~~~l~~d-~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~-~~~ 320 (524)
T d2ar0a1 243 LGNTLGSD-GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK-GTD 320 (524)
T ss_dssp ESCTTSHH-HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTH-HHH
T ss_pred hhhhhhhc-ccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhh-hHH
Confidence 00 01000 01345799999874332111 011112345555543 6999988877432 2322 145
Q ss_pred HHHHHHH
Q 012511 217 MRSHILW 223 (462)
Q Consensus 217 aR~~lL~ 223 (462)
.|+.|++
T Consensus 321 iR~~Ll~ 327 (524)
T d2ar0a1 321 IRRDLMD 327 (524)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7999885
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=94.57 E-value=0.019 Score=52.02 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=27.1
Q ss_pred CCCeEEEECCchhHHHHHHHHh---CCCCccEEEEEeCCHHHH
Q 012511 92 SPAKVLDFGAGTGSAFWALREV---WPRSLEKVNLVEPSQSMQ 131 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~---~~~~~~~v~~VD~S~~ml 131 (462)
+|.+||++|++.|..+..+++. .+ ...+++++|+.+...
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~-~~~kI~giDId~~~~ 121 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMG-IDCQVIGIDRDLSRC 121 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTT-CCCEEEEEESCCTTC
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcC-CCceEEecCcChhhh
Confidence 5789999999888544433332 33 356999999987543
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=94.19 E-value=0.17 Score=45.94 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=30.2
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCC
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPS 127 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S 127 (462)
|.++.++.--....+|+|+|||||..++.++..- ....+.++++-
T Consensus 55 l~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~--~v~~V~g~~iG 99 (257)
T d2p41a1 55 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLK--NVREVKGLTKG 99 (257)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTST--TEEEEEEECCC
T ss_pred HHHHHHhcCccCCCeEEEecCCCChHHHHHHhhc--CCCceeEEEec
Confidence 4555555422234699999999999998887632 24567777753
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=93.67 E-value=0.15 Score=48.83 Aligned_cols=89 Identities=16% Similarity=0.298 Sum_probs=56.3
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCC-----CccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhh
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPR-----SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQAL 156 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~-----~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l 156 (462)
..+-..++...+.+|+++|+|.|+++.-+...+.. ...+|+.||.|+.+.+.-++.+.....+.+. .++
T Consensus 69 ~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w~------~~~ 142 (365)
T d1zkda1 69 ASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWH------DSF 142 (365)
T ss_dssp HHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEE------SSG
T ss_pred HHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcccccceec------cCh
Confidence 33333444334568999999999998766665432 2357999999999988877777653322111 112
Q ss_pred hhccCCCCCcccEEEecccccCCC
Q 012511 157 NKDISKSEREHDLVIASYVLGEVP 180 (462)
Q Consensus 157 ~~~l~~~~~~fDLVias~vL~el~ 180 (462)
. .++ ...-+|+|+=+|.-+|
T Consensus 143 ~-~~~---~~~g~iiaNE~fDAlP 162 (365)
T d1zkda1 143 E-DVP---EGPAVILANEYFDVLP 162 (365)
T ss_dssp G-GSC---CSSEEEEEESSGGGSC
T ss_pred h-hcc---cCCeEEEecccCcccc
Confidence 1 122 1235788888888887
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.089 Score=48.94 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=40.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
.+.+|||+.||||.=+.++++... ....++++|.|+.-++..+..++..+
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~-~~~~i~a~d~~~~R~~~l~~~l~r~g 143 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLK-NQGKIFAFDLDAKRLASMATLLARAG 143 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred ccceEEecccchhhHHHHHHHHhc-CCceEeeecCCHHHHHHHHHHHHhcC
Confidence 457899999999987777777665 35689999999998888888876543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.72 E-value=0.26 Score=45.39 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=39.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
.+.+|||+.||||.=+.++++... ...++++|.++.-++..+..++..+
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~--~~~i~a~d~~~~R~~~l~~~~~r~g 150 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAP--EAQVVAVDIDEQRLSRVYDNLKRLG 150 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCT--TCEEEEEESSTTTHHHHHHHHHHTT
T ss_pred ccceeEeccCccccchhhhhhhhh--hhhhhhhhcchhhhhhHhhhhhccc
Confidence 457999999999987777777654 3689999999998888888776543
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.09 E-value=0.16 Score=47.75 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=39.8
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
....+|||+|.|+|..+.++.+.. ...++++||.++.+.+..++++.+
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~--~~~~v~~iE~D~~~~~~L~~~~~~ 89 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKY--CPRQYSLLEKRSSLYKFLNAKFEG 89 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHH--CCSEEEEECCCHHHHHHHHHHTTT
T ss_pred cCCCeEEEECCCCCHHHHHHHhcC--CCCEEEEEECCHHHHHHHHHhccC
Confidence 346789999999999999988742 135899999999999998888764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.61 E-value=0.78 Score=37.93 Aligned_cols=44 Identities=18% Similarity=0.083 Sum_probs=34.9
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhh
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 138 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll 138 (462)
...+||-+|||+ |..+.+++..++ .+++++|.+++-++.|+++-
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~G---a~vi~v~~~~~r~~~a~~~g 70 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYG---AFVVCTARSPRRLEVAKNCG 70 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTT
T ss_pred CCCEEEEEcccccchhhHhhHhhhc---ccccccchHHHHHHHHHHcC
Confidence 457999999995 555666667665 48999999999999998864
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.90 E-value=0.2 Score=46.94 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=49.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+.||||.=+.++++... ....++++|.++.-+...+..++..+....+.... + ...++.....||.|+
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~-~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~---d-~~~~~~~~~~fD~IL 190 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMR-NDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS---S-SLHIGELNVEFDKIL 190 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTT-TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS---C-GGGGGGGCCCEEEEE
T ss_pred ccceeeecccchhhhhHhhhhhcc-cccceeeeccCHHHHHHHHHHHHHHHhhccccccc---c-ccccccccccccEEE
Confidence 457999999999987777777665 35689999999998888877766433211111100 1 111223356899987
Q ss_pred e
Q 012511 172 A 172 (462)
Q Consensus 172 a 172 (462)
+
T Consensus 191 v 191 (313)
T d1ixka_ 191 L 191 (313)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.49 E-value=1.4 Score=36.51 Aligned_cols=102 Identities=19% Similarity=0.110 Sum_probs=56.1
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC-CCCCcccE
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~-~~~~~fDL 169 (462)
...+||=+|+|+ |..+..++..++ ..+++++|.+++-++.|+++=.+.. ..............+. .....+|+
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G--~~~Vi~~d~~~~rl~~a~~~Ga~~~---~~~~~~~~~~~~~~~~~~~g~g~Dv 100 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKEIGADLV---LQISKESPQEIARKVEGQLGCKPEV 100 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTTCSEE---EECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred CCCEEEEECCCccHHHHHHHHHHcC--CceEEeccCCHHHHHHHHHhCCccc---ccccccccccccccccccCCCCceE
Confidence 346999999997 444555666554 3589999999999999987522110 0000000001111010 12347899
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|+-.-. +. ...+..-++.+ ++|.++++-.
T Consensus 101 vid~~G-----~~-~~~~~a~~~~~-~gG~iv~~G~ 129 (171)
T d1pl8a2 101 TIECTG-----AE-ASIQAGIYATR-SGGTLVLVGL 129 (171)
T ss_dssp EEECSC-----CH-HHHHHHHHHSC-TTCEEEECSC
T ss_pred EEeccC-----Cc-hhHHHHHHHhc-CCCEEEEEec
Confidence 885431 22 22333334444 6999998753
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=89.22 E-value=0.4 Score=43.60 Aligned_cols=46 Identities=13% Similarity=-0.027 Sum_probs=39.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~ 141 (462)
.+..|||.=||+||.+.|+... ..+++++|+|++..+.|++.+.+.
T Consensus 250 ~gdiVlDpF~GSGTT~~AA~~l----gR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 250 PDDLVVDIFGGSNTTGLVAERE----SRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred CCCEEEecCCCCcHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHHHhc
Confidence 4579999999999999888873 568999999999999999887653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=87.76 E-value=0.63 Score=40.86 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=38.8
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
..+..|||.=||+||.+.|+.. ...+++|+|.+++..+.|+++++
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~~----~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAKK----LGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHHH----cCCeEEEEeCCHHHHHHHHHHHc
Confidence 3457999999999999988887 35689999999999999998774
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.72 E-value=1.3 Score=37.96 Aligned_cols=44 Identities=18% Similarity=0.076 Sum_probs=34.3
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
...+||-+|||+ |..+..++...+ ..+++++|.+++-++.|+++
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~g--a~~Vi~~d~~~~rl~~a~~~ 69 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLG--AAVVIVGDLNPARLAHAKAQ 69 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHT
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhc--ccceeeecccchhhHhhhhc
Confidence 457999999997 545555555554 46899999999999999875
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=86.55 E-value=0.87 Score=38.24 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=35.3
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
.+.+||-+|+|+ |..+..++..++ ..+|+++|.+++-++.++++
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~G--a~~Vi~~~~~~~~~~~a~~l 72 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLG--AENVIVIAGSPNRLKLAEEI 72 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTT--BSEEEEEESCHHHHHHHHHT
T ss_pred CCCEEEEECCCccchhheecccccc--cccccccccccccccccccc
Confidence 347999999995 666666777664 35899999999999999875
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=86.13 E-value=0.82 Score=43.38 Aligned_cols=19 Identities=16% Similarity=0.136 Sum_probs=16.5
Q ss_pred CCCCcccEEEecccccCCC
Q 012511 162 KSEREHDLVIASYVLGEVP 180 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~ 180 (462)
++.++.|++.++++||+|.
T Consensus 135 fP~~Slh~~~Ss~alHWLS 153 (359)
T d1m6ex_ 135 FPRNTLHFIHSSYSLMWLS 153 (359)
T ss_dssp SCTTCBSCEEEESCTTBCS
T ss_pred CCCCceEEeeehhhhhhhh
Confidence 3577899999999999985
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=85.49 E-value=0.54 Score=45.01 Aligned_cols=46 Identities=24% Similarity=0.109 Sum_probs=37.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
++.+|||..||+|.-....+...+ ..+|+++|.|+..++.+++.++
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~--~~~V~~nDis~~A~~~i~~N~~ 90 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETP--AEEVWLNDISEDAYELMKRNVM 90 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS--CSEEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCC--CCEEEEecCCHHHHHHHHHHHH
Confidence 468999999999987764433333 4689999999999999998874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=84.95 E-value=1.7 Score=36.24 Aligned_cols=63 Identities=11% Similarity=-0.036 Sum_probs=42.7
Q ss_pred cCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 69 RMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 69 r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
.++-.++..+..+.. ..-.+..+||=+|||+ |..+..++..++ ..+|+++|.+++-++.++++
T Consensus 8 ~l~~~~~ta~~a~~~----a~~~~g~~VlI~GaG~vGl~~~q~ak~~G--a~~Vi~~d~~~~r~~~a~~l 71 (174)
T d1jqba2 8 MITDMMTTGFHGAEL----ADIEMGSSVVVIGIGAVGLMGIAGAKLRG--AGRIIGVGSRPICVEAAKFY 71 (174)
T ss_dssp TTTTHHHHHHHHHHH----TTCCTTCCEEEECCSHHHHHHHHHHHTTT--CSCEEEECCCHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHH----hCCCCCCEEEEEcCCcchhhhhhhhhccc--ccccccccchhhhHHHHHhh
Confidence 344555555555422 2222346899999996 777777777654 35799999999999998874
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=82.42 E-value=0.43 Score=43.15 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=33.0
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhh
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 138 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll 138 (462)
.+|||.-||.|.-++.++.. ..+|+++|.|+.+..+.+..+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~----G~~V~~iEr~p~l~~ll~d~l 130 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV----GCRVRMLERNPVVAALLDDGL 130 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH----TCCEEEEECCHHHHHHHHHHH
T ss_pred CEEEECCCcccHHHHHHHhC----CCEEEEEccCHHHHHHHHHHH
Confidence 48999999999988888874 357999999998766655444
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=80.90 E-value=2.2 Score=35.67 Aligned_cols=46 Identities=9% Similarity=0.054 Sum_probs=35.6
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
...+||=+|||+ |..+.+++..++ ..+|+++|.+++-++.|+++=.
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G--~~~Vi~vd~~~~kl~~Ak~~GA 75 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAG--ASRIIGIDLNKDKFEKAMAVGA 75 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHHTC
T ss_pred CCCEEEEECCCchhHHHHHHHHHcC--CceEEEecCcHHHHHHHHhcCC
Confidence 357999999995 455555666554 4689999999999999998743
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.77 E-value=1.1 Score=39.60 Aligned_cols=46 Identities=17% Similarity=0.083 Sum_probs=39.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~ 141 (462)
.+..|||.=||+||.+.|+... ..+++++|.+++..+.|++.++..
T Consensus 207 ~gdiVLDpF~GSGTT~~Aa~~l----gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 207 PGSTVLDFFAGSGVTARVAIQE----GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp TTCEEEETTCTTCHHHHHHHHH----TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred CCCEEEecCCCCcHHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 4579999999999999988873 468999999999999999888653
|