Citrus Sinensis ID: 012530
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DCD1 | 550 | FGGY carbohydrate kinase | N/A | no | 0.939 | 0.787 | 0.501 | 1e-126 | |
| A2AJL3 | 552 | FGGY carbohydrate kinase | yes | no | 0.939 | 0.784 | 0.498 | 1e-123 | |
| Q96C11 | 551 | FGGY carbohydrate kinase | yes | no | 0.939 | 0.785 | 0.492 | 1e-122 | |
| Q6NUW9 | 545 | FGGY carbohydrate kinase | no | no | 0.941 | 0.796 | 0.472 | 1e-113 | |
| Q04585 | 715 | Uncharacterized sugar kin | yes | no | 0.913 | 0.588 | 0.363 | 1e-76 | |
| Q65GC1 | 552 | Ribulokinase OS=Bacillus | yes | no | 0.878 | 0.733 | 0.278 | 2e-36 | |
| Q8NXY1 | 545 | Ribulokinase OS=Staphyloc | yes | no | 0.785 | 0.664 | 0.290 | 5e-35 | |
| Q6GBT5 | 545 | Ribulokinase OS=Staphyloc | yes | no | 0.785 | 0.664 | 0.290 | 5e-35 | |
| Q2YSA9 | 545 | Ribulokinase OS=Staphyloc | yes | no | 0.785 | 0.664 | 0.290 | 5e-35 | |
| P63550 | 545 | Ribulokinase OS=Staphyloc | yes | no | 0.785 | 0.664 | 0.290 | 7e-35 |
| >sp|Q6DCD1|FGGY_XENLA FGGY carbohydrate kinase domain-containing protein OS=Xenopus laevis GN=fggy PE=2 SV=2 | Back alignment and function desciption |
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Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/461 (50%), Positives = 306/461 (66%), Gaps = 28/461 (6%)
Query: 1 MDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENL-QESWSMVFRWMDLSDW 59
MDHRA Q ++IN N VL+Y GG +S EMQPPKLLW+KENL +E W+ + DL D+
Sbjct: 114 MDHRAGCQVDRINRTNHKVLRYVGGVMSVEMQPPKLLWLKENLREECWNKSGQLFDLPDF 173
Query: 60 LSYRATGDDTRSLCTTVCKWTY-LGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLID 118
L+++ATGD+TRS CT VCKWTY L H GWDD FW+EIGL D+ +
Sbjct: 174 LTWKATGDNTRSFCTLVCKWTYSLDH-----------------GWDDSFWKEIGLEDICE 216
Query: 119 GHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVS 178
G++ KIG V PG +G+ LT AAKELGL G PV SLIDAHAGG+GV+ + S+
Sbjct: 217 GNYVKIGNQVMSPGASIGNCLTATAAKELGLPEGLPVAASLIDAHAGGLGVIGA---SLK 273
Query: 179 E-AKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSAT 237
E E E I R+ L+CGTS+CHM +S +F+PGVWGP++SAM+P WL EGGQSAT
Sbjct: 274 EYGLEGENHPITSRLALICGTSSCHMGISEKPIFVPGVWGPYYSAMIPGLWLNEGGQSAT 333
Query: 238 GALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPD 297
G L+D+++ H+A L N+A +R ++ LN L+ + + S V L D+HV PD
Sbjct: 334 GKLIDHVVHGHIAFMELENQAKARGQHIYTYLNNHLDKI---KKSGPVGFLAADLHVWPD 390
Query: 298 FHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDT 357
FHGNRSP+AD KG++ G+TL S LA LYLAT+Q IA GTRHI+E GH I T
Sbjct: 391 FHGNRSPLADLTMKGMVVGLTLSKSLDDLATLYLATIQAIALGTRHILETMQTAGHHIST 450
Query: 358 LLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMN 417
L CGGL+KNPLF+Q HADI G P++L +E ESVL+GAAILGA A+ + S+ EAM+ M+
Sbjct: 451 LYLCGGLSKNPLFVQMHADITGLPVVLSKEVESVLVGAAILGACASGDFPSIKEAMEKMS 510
Query: 418 AAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQ 458
G++I P+ + K+++D KY +F +L Q ++IM +
Sbjct: 511 KVGKIIFPNHED--KRFYDKKYEVFLKLSSHQKEYQAIMGR 549
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Xenopus laevis (taxid: 8355) EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: - |
| >sp|A2AJL3|FGGY_MOUSE FGGY carbohydrate kinase domain-containing protein OS=Mus musculus GN=Fggy PE=2 SV=1 | Back alignment and function description |
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| >sp|Q96C11|FGGY_HUMAN FGGY carbohydrate kinase domain-containing protein OS=Homo sapiens GN=FGGY PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6NUW9|FGGY_DANRE FGGY carbohydrate kinase domain-containing protein OS=Danio rerio GN=fggy PE=2 SV=2 | Back alignment and function description |
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| >sp|Q04585|YDR09_YEAST Uncharacterized sugar kinase YDR109C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR109C PE=1 SV=1 | Back alignment and function description |
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| >sp|Q65GC1|ARAB_BACLD Ribulokinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=araB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8NXY1|ARAB_STAAW Ribulokinase OS=Staphylococcus aureus (strain MW2) GN=araB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6GBT5|ARAB_STAAS Ribulokinase OS=Staphylococcus aureus (strain MSSA476) GN=araB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2YSA9|ARAB_STAAB Ribulokinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=araB PE=3 SV=1 | Back alignment and function description |
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| >sp|P63550|ARAB_STAAN Ribulokinase OS=Staphylococcus aureus (strain N315) GN=araB PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | ||||||
| 225446130 | 581 | PREDICTED: FGGY carbohydrate kinase doma | 1.0 | 0.793 | 0.854 | 0.0 | |
| 357479747 | 576 | FGGY carbohydrate kinase domain-containi | 0.995 | 0.796 | 0.830 | 0.0 | |
| 356562466 | 583 | PREDICTED: FGGY carbohydrate kinase doma | 1.0 | 0.790 | 0.832 | 0.0 | |
| 356547559 | 580 | PREDICTED: FGGY carbohydrate kinase doma | 1.0 | 0.794 | 0.826 | 0.0 | |
| 42567264 | 579 | FGGY family of carbohydrate kinase [Arab | 1.0 | 0.796 | 0.824 | 0.0 | |
| 51971499 | 579 | unnamed protein product [Arabidopsis tha | 1.0 | 0.796 | 0.822 | 0.0 | |
| 356562464 | 569 | PREDICTED: FGGY carbohydrate kinase doma | 0.978 | 0.792 | 0.832 | 0.0 | |
| 297802998 | 580 | hypothetical protein ARALYDRAFT_491720 [ | 1.0 | 0.794 | 0.822 | 0.0 | |
| 326534226 | 571 | predicted protein [Hordeum vulgare subsp | 0.997 | 0.805 | 0.810 | 0.0 | |
| 7269931 | 569 | putative protein [Arabidopsis thaliana] | 0.978 | 0.792 | 0.811 | 0.0 |
| >gi|225446130|ref|XP_002275685.1| PREDICTED: FGGY carbohydrate kinase domain-containing protein [Vitis vinifera] gi|297735351|emb|CBI17791.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/461 (85%), Positives = 436/461 (94%)
Query: 1 MDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWL 60
MDHRAVKQAEKINS +SPVLQYCGG++SPEMQPPKLLWVKENLQESW+M FRWMDLSDWL
Sbjct: 121 MDHRAVKQAEKINSSSSPVLQYCGGSLSPEMQPPKLLWVKENLQESWTMAFRWMDLSDWL 180
Query: 61 SYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH 120
+YRATGDDTRSLCTTVCKWTYLGHAHM+Q+NEK R+MEACGWDD+FWEEIGLGDLIDGH
Sbjct: 181 AYRATGDDTRSLCTTVCKWTYLGHAHMEQINEKDSRNMEACGWDDDFWEEIGLGDLIDGH 240
Query: 121 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEA 180
HAKIGRSVAFPGHPLGSGLTP AAKE+GL GTPVGTSLIDAHAGGVGVMESV SE+
Sbjct: 241 HAKIGRSVAFPGHPLGSGLTPDAAKEMGLRAGTPVGTSLIDAHAGGVGVMESVAVPDSES 300
Query: 181 KENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGAL 240
KE E+ AICHR+VLVCGTSTCHMAVSR KLFIPGVWGPFWSAMVP++WLTEGGQSATGAL
Sbjct: 301 KEYEKGAICHRLVLVCGTSTCHMAVSRRKLFIPGVWGPFWSAMVPEYWLTEGGQSATGAL 360
Query: 241 LDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHG 300
LDYIIENHVAS LANRAAS+++S+FELLN LESM+ + SPF+AALTEDIHVLPDFHG
Sbjct: 361 LDYIIENHVASPRLANRAASQNISVFELLNKILESMMQDLKSPFLAALTEDIHVLPDFHG 420
Query: 301 NRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLA 360
NRSPIADPK+KG++CG+TLD+SEKQLALLYLATVQ IAYGTRHIV+HCNAHGH+IDTLLA
Sbjct: 421 NRSPIADPKAKGVVCGLTLDTSEKQLALLYLATVQSIAYGTRHIVDHCNAHGHQIDTLLA 480
Query: 361 CGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAG 420
CGGLAKNPLFLQ+HADI+GCPI+LPRE+ESVLLGAAILGAVA+K+YSSL ++MKA+NAAG
Sbjct: 481 CGGLAKNPLFLQEHADIVGCPIVLPRESESVLLGAAILGAVASKKYSSLSDSMKALNAAG 540
Query: 421 QVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 461
QVIHP++DPKVKKYHDAKY IFREL+EQQ+S RSIMAQALA
Sbjct: 541 QVIHPAEDPKVKKYHDAKYQIFRELYEQQLSHRSIMAQALA 581
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357479747|ref|XP_003610159.1| FGGY carbohydrate kinase domain-containing protein [Medicago truncatula] gi|355511214|gb|AES92356.1| FGGY carbohydrate kinase domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356562466|ref|XP_003549492.1| PREDICTED: FGGY carbohydrate kinase domain-containing protein-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356547559|ref|XP_003542178.1| PREDICTED: FGGY carbohydrate kinase domain-containing protein-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|42567264|ref|NP_194760.2| FGGY family of carbohydrate kinase [Arabidopsis thaliana] gi|332660351|gb|AEE85751.1| FGGY family of carbohydrate kinase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|51971499|dbj|BAD44414.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356562464|ref|XP_003549491.1| PREDICTED: FGGY carbohydrate kinase domain-containing protein-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297802998|ref|XP_002869383.1| hypothetical protein ARALYDRAFT_491720 [Arabidopsis lyrata subsp. lyrata] gi|297315219|gb|EFH45642.1| hypothetical protein ARALYDRAFT_491720 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|326534226|dbj|BAJ89463.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
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| >gi|7269931|emb|CAB81024.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | ||||||
| TAIR|locus:2118761 | 579 | AT4G30310 [Arabidopsis thalian | 1.0 | 0.796 | 0.767 | 3.5e-201 | |
| UNIPROTKB|E1BNF8 | 550 | FGGY "Uncharacterized protein" | 0.754 | 0.632 | 0.461 | 2.4e-83 | |
| MGI|MGI:1922828 | 552 | Fggy "FGGY carbohydrate kinase | 0.754 | 0.630 | 0.464 | 6.4e-83 | |
| UNIPROTKB|Q96C11 | 551 | FGGY "FGGY carbohydrate kinase | 0.754 | 0.631 | 0.459 | 7.4e-82 | |
| RGD|1359429 | 439 | Fggy "FGGY carbohydrate kinase | 0.754 | 0.792 | 0.459 | 1.5e-81 | |
| UNIPROTKB|F1LSP9 | 552 | Fggy "Protein Fggy" [Rattus no | 0.754 | 0.630 | 0.459 | 1.5e-81 | |
| UNIPROTKB|F1PLD3 | 552 | FGGY "Uncharacterized protein" | 0.754 | 0.630 | 0.450 | 1.4e-80 | |
| ZFIN|ZDB-GENE-040426-2461 | 545 | fggy "FGGY carbohydrate kinase | 0.757 | 0.640 | 0.436 | 1.3e-77 | |
| UNIPROTKB|E1C771 | 519 | FGGY "Uncharacterized protein" | 0.691 | 0.614 | 0.472 | 1.6e-77 | |
| UNIPROTKB|F2Z2V1 | 507 | FGGY "FGGY carbohydrate kinase | 0.616 | 0.560 | 0.494 | 6.5e-74 |
| TAIR|locus:2118761 AT4G30310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1947 (690.4 bits), Expect = 3.5e-201, P = 3.5e-201
Identities = 354/461 (76%), Positives = 393/461 (85%)
Query: 1 MDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWL 60
MDHRAVKQAE+INS NSPVLQYCGG VSPEM+PPKLLWVKENL+ESWSMV++WMDLSDWL
Sbjct: 119 MDHRAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWL 178
Query: 61 SYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH 120
SYRATGDDTRSLCTTVCKWTYLGHAHM QM EK RDMEACGWDDEFWEEIGLGDL+DGH
Sbjct: 179 SYRATGDDTRSLCTTVCKWTYLGHAHMHQMTEKASRDMEACGWDDEFWEEIGLGDLVDGH 238
Query: 121 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXX 180
HAKIGRSVAFPGHPLG+GLT AAKELGL+ GTPVGTSLIDAHAGGVGVMES
Sbjct: 239 HAKIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVMESKLESDSLT 298
Query: 181 XXXXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGAL 240
+C RMVLVCGTSTCHMAVSR KLFIPGVWGPFWSAMVP++WLTEGGQSATGAL
Sbjct: 299 KESDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSAMVPEYWLTEGGQSATGAL 358
Query: 241 LDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHG 300
LD+IIENHV VS+FELLN L++M + +SPF++ALT D+H+LPDFHG
Sbjct: 359 LDHIIENHVASPRLANRAASQKVSVFELLNNILKTMAEDTSSPFISALTSDMHILPDFHG 418
Query: 301 NRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLA 360
NRSP+ADP SKG+I GM+LD+SEKQLALLYLAT+QGIAYGTRHIVEHCN HGHKIDTLLA
Sbjct: 419 NRSPVADPNSKGVIFGMSLDTSEKQLALLYLATIQGIAYGTRHIVEHCNTHGHKIDTLLA 478
Query: 361 CGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSLIEAMKAMNAAG 420
CGGL+KNPLF+Q+HADI+GCPIILPRE+ES K Y SL +AMKA+NAAG
Sbjct: 479 CGGLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAG 538
Query: 421 QVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 461
QV+HPS DPK+KKYHDAKY IFR L+EQQ+S RSI+A+ALA
Sbjct: 539 QVVHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSIIAEALA 579
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| UNIPROTKB|E1BNF8 FGGY "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| MGI|MGI:1922828 Fggy "FGGY carbohydrate kinase domain containing" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q96C11 FGGY "FGGY carbohydrate kinase domain-containing protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| RGD|1359429 Fggy "FGGY carbohydrate kinase domain containing" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LSP9 Fggy "Protein Fggy" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PLD3 FGGY "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040426-2461 fggy "FGGY carbohydrate kinase domain containing" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C771 FGGY "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F2Z2V1 FGGY "FGGY carbohydrate kinase domain-containing protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 461 | |||
| cd07782 | 536 | cd07782, FGGY_YpCarbK_like, Yersinia Pseudotubercu | 0.0 | |
| TIGR01315 | 541 | TIGR01315, 5C_CHO_kinase, FGGY-family pentulose ki | 1e-165 | |
| COG1069 | 544 | COG1069, AraB, Ribulose kinase [Energy production | 1e-152 | |
| cd07768 | 465 | cd07768, FGGY_RBK_like, Ribulokinase-like carbohyd | 6e-90 | |
| cd07783 | 484 | cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase | 2e-80 | |
| cd07781 | 498 | cd07781, FGGY_RBK, Ribulokinases; belongs to the F | 1e-75 | |
| PRK04123 | 548 | PRK04123, PRK04123, ribulokinase; Provisional | 1e-68 | |
| cd07804 | 492 | cd07804, FGGY_XK_like_1, uncharacterized xylulose | 2e-60 | |
| pfam02782 | 193 | pfam02782, FGGY_C, FGGY family of carbohydrate kin | 9e-56 | |
| cd00366 | 435 | cd00366, FGGY, FGGY family of carbohydrate kinases | 1e-55 | |
| TIGR01234 | 536 | TIGR01234, L-ribulokinase, L-ribulokinase | 4e-51 | |
| COG1070 | 502 | COG1070, XylB, Sugar (pentulose and hexulose) kina | 8e-37 | |
| cd07805 | 514 | cd07805, FGGY_XK_like_2, uncharacterized xylulose | 5e-35 | |
| cd07803 | 482 | cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup | 5e-33 | |
| cd07779 | 488 | cd07779, FGGY_ygcE_like, uncharacterized ygcE-like | 1e-23 | |
| cd07808 | 482 | cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xyl | 2e-23 | |
| cd07802 | 447 | cd07802, FGGY_L-XK, L-xylulose kinases; a subfamil | 3e-22 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 9e-22 | |
| cd07769 | 484 | cd07769, FGGY_GK, Glycerol kinases; a subfamily of | 5e-20 | |
| TIGR01311 | 493 | TIGR01311, glycerol_kin, glycerol kinase | 2e-18 | |
| PTZ00294 | 504 | PTZ00294, PTZ00294, glycerol kinase-like protein; | 4e-18 | |
| cd07774 | 430 | cd07774, FGGY_1, uncharacterized subgroup; belongs | 3e-17 | |
| cd07811 | 493 | cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup | 1e-16 | |
| cd07786 | 486 | cd07786, FGGY_EcGK_like, Escherichia coli glycerol | 1e-16 | |
| COG0554 | 499 | COG0554, GlpK, Glycerol kinase [Energy production | 4e-16 | |
| cd07809 | 487 | cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup | 5e-16 | |
| cd07792 | 504 | cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kin | 3e-12 | |
| cd07795 | 496 | cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisi | 2e-11 | |
| PRK00047 | 498 | PRK00047, glpK, glycerol kinase; Provisional | 2e-11 | |
| cd07789 | 495 | cd07789, FGGY_CsGK_like, Cellulomonas sp | 6e-11 | |
| PRK10331 | 470 | PRK10331, PRK10331, L-fuculokinase; Provisional | 1e-09 | |
| cd07791 | 484 | cd07791, FGGY_GK2_bacteria, bacterial glycerol kin | 7e-09 | |
| cd07793 | 504 | cd07793, FGGY_GK5_metazoa, metazoan glycerol kinas | 9e-09 | |
| cd07808 | 482 | cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xyl | 1e-08 | |
| TIGR01314 | 505 | TIGR01314, gntK_FGGY, gluconate kinase, FGGY type | 5e-08 | |
| cd10427 | 487 | cd10427, FGGY_GK_1, Uncharacterized subgroup; belo | 2e-07 | |
| PLN02295 | 512 | PLN02295, PLN02295, glycerol kinase | 1e-06 | |
| cd07794 | 470 | cd07794, FGGY_GK_like_proteobact, Proteobacterial | 2e-06 | |
| cd07770 | 440 | cd07770, FGGY_GntK, Gluconate kinases; a subfamily | 3e-06 | |
| PRK10939 | 520 | PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; P | 3e-06 | |
| cd07773 | 448 | cd07773, FGGY_FK, L-fuculose kinases; a subfamily | 5e-06 | |
| PRK15027 | 484 | PRK15027, PRK15027, xylulokinase; Provisional | 8e-06 | |
| pfam00370 | 245 | pfam00370, FGGY_N, FGGY family of carbohydrate kin | 3e-05 | |
| cd07775 | 452 | cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subf | 4e-05 | |
| PRK10939 | 520 | PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; P | 6e-05 | |
| PRK10331 | 470 | PRK10331, PRK10331, L-fuculokinase; Provisional | 7e-05 | |
| TIGR02628 | 465 | TIGR02628, fuculo_kin_coli, L-fuculokinase | 1e-04 | |
| cd07775 | 452 | cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subf | 3e-04 | |
| cd07796 | 503 | cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and rel | 5e-04 |
| >gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 719 bits (1859), Expect = 0.0
Identities = 255/453 (56%), Positives = 322/453 (71%), Gaps = 24/453 (5%)
Query: 1 MDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWL 60
MDHRA+ +AE+IN+ PVL+Y GG +SPEM+ PKLLW+KENL E+WS ++ DL D+L
Sbjct: 108 MDHRAISEAERINATGHPVLKYVGGVISPEMETPKLLWLKENLPETWSRAGKFFDLPDFL 167
Query: 61 SYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH 120
++RATG +TRSLCT VCKWTYL H E GWDD+F E IGL DL++ +
Sbjct: 168 TWRATGSETRSLCTLVCKWTYLAH--------------EKKGWDDDFLEAIGLEDLVEEN 213
Query: 121 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEA 180
AKIG V PG PLG+GLT AA ELGL PGTPVG LIDAHAGG+GV+ +
Sbjct: 214 FAKIGEDVLPPGEPLGNGLTAEAAAELGLPPGTPVGAGLIDAHAGGIGVLGADLS----- 268
Query: 181 KENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGAL 240
E + + R+ L+CGTSTCHMA+S + +F+PGVWGP++SAMVP WL EGGQSATGAL
Sbjct: 269 -GCEADDLTSRLALICGTSTCHMALSPDPVFVPGVWGPYFSAMVPGLWLNEGGQSATGAL 327
Query: 241 LDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHG 300
LD+II++H A L +A +S++ LN LE + E+ S A LT D+HVLPDFHG
Sbjct: 328 LDHIIQSHPAFPELKEQAGESGISIYAYLNARLEELAAEKGSV--AYLTRDLHVLPDFHG 385
Query: 301 NRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLA 360
NRSP+ADP +G+I G+TLD+S LA LYLAT+Q IAYGTRHI+E NA GHKIDTL A
Sbjct: 386 NRSPLADPNLRGVISGLTLDTSLDDLARLYLATLQAIAYGTRHIIEAMNAAGHKIDTLFA 445
Query: 361 CGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAG 420
CGGL+KNPLF+Q HAD G P++LP+E E+VLLGAA+LGAVAA + SL EAM AM+ G
Sbjct: 446 CGGLSKNPLFVQLHADATGLPVVLPKEEEAVLLGAAMLGAVAAGDFPSLKEAMAAMSRPG 505
Query: 421 QVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQR 453
+ + P + ++K YHD KY +F ++ E Q R
Sbjct: 506 RTVKP--NTELKAYHDRKYRVFLKMQEHQREYR 536
|
This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 536 |
| >gnl|CDD|233356 TIGR01315, 5C_CHO_kinase, FGGY-family pentulose kinase | Back alignment and domain information |
|---|
| >gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|198360 cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|235221 PRK04123, PRK04123, ribulokinase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|130301 TIGR01234, L-ribulokinase, L-ribulokinase | Back alignment and domain information |
|---|
| >gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|212666 cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
| >gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase | Back alignment and domain information |
|---|
| >gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|198377 cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup 3; members of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and related proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp | Back alignment and domain information |
|---|
| >gnl|CDD|182383 PRK10331, PRK10331, L-fuculokinase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|130381 TIGR01314, gntK_FGGY, gluconate kinase, FGGY type | Back alignment and domain information |
|---|
| >gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the glycerol kinases subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase | Back alignment and domain information |
|---|
| >gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|198351 cd07773, FGGY_FK, L-fuculose kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|184987 PRK15027, PRK15027, xylulokinase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182383 PRK10331, PRK10331, L-fuculokinase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|131676 TIGR02628, fuculo_kin_coli, L-fuculokinase | Back alignment and domain information |
|---|
| >gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
| >gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 100.0 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 100.0 | |
| PRK15027 | 484 | xylulokinase; Provisional | 100.0 | |
| PRK04123 | 548 | ribulokinase; Provisional | 100.0 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 100.0 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 100.0 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 100.0 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 100.0 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 100.0 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 100.0 | |
| PLN02295 | 512 | glycerol kinase | 100.0 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 100.0 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 100.0 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 100.0 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 100.0 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 100.0 | |
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 100.0 | |
| PLN02669 | 556 | xylulokinase | 100.0 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 100.0 | |
| KOG2517 | 516 | consensus Ribulose kinase and related carbohydrate | 100.0 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 100.0 | |
| KOG2531 | 545 | consensus Sugar (pentulose and hexulose) kinases [ | 100.0 | |
| PF00370 | 245 | FGGY_N: FGGY family of carbohydrate kinases, N-ter | 99.95 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.35 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 97.9 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 97.18 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 97.09 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 97.07 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 96.98 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 96.85 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 96.83 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 96.79 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 96.63 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 96.57 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 96.57 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 96.57 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 96.56 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 96.55 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 96.53 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 96.49 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 96.4 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 96.28 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 96.27 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 96.18 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 96.18 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 95.99 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 95.78 | |
| PRK11678 | 450 | putative chaperone; Provisional | 95.77 | |
| COG2377 | 371 | Predicted molecular chaperone distantly related to | 95.51 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 95.37 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 95.12 | |
| PRK09585 | 365 | anmK anhydro-N-acetylmuramic acid kinase; Reviewed | 94.87 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 94.77 | |
| KOG0103 | 727 | consensus Molecular chaperones HSP105/HSP110/SSE1, | 94.48 | |
| PF03702 | 364 | UPF0075: Uncharacterised protein family (UPF0075); | 94.42 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 94.31 | |
| PLN02920 | 398 | pantothenate kinase 1 | 94.15 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 93.68 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 93.38 | |
| PF03630 | 341 | Fumble: Fumble ; InterPro: IPR004567 Pantothenate | 92.3 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 92.09 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 91.73 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 91.62 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 91.57 | |
| PF02543 | 360 | CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036 | 91.34 | |
| TIGR03281 | 326 | methan_mark_12 putative methanogenesis marker prot | 90.18 | |
| COG2192 | 555 | Predicted carbamoyl transferase, NodU family [Post | 89.85 | |
| PRK09604 | 332 | UGMP family protein; Validated | 89.81 | |
| PRK14878 | 323 | UGMP family protein; Provisional | 89.4 | |
| KOG0100 | 663 | consensus Molecular chaperones GRP78/BiP/KAR2, HSP | 89.34 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 89.03 | |
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 87.52 | |
| TIGR00143 | 711 | hypF [NiFe] hydrogenase maturation protein HypF. A | 86.48 | |
| KOG0101 | 620 | consensus Molecular chaperones HSP70/HSC70, HSP70 | 85.21 | |
| PTZ00340 | 345 | O-sialoglycoprotein endopeptidase-like protein; Pr | 84.09 | |
| PLN02902 | 876 | pantothenate kinase | 83.99 | |
| TIGR03723 | 314 | bact_gcp putative glycoprotease GCP. This model re | 83.83 | |
| PRK00976 | 326 | hypothetical protein; Provisional | 83.37 | |
| COG3426 | 358 | Butyrate kinase [Energy production and conversion] | 81.88 |
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-78 Score=639.89 Aligned_cols=425 Identities=44% Similarity=0.750 Sum_probs=352.5
Q ss_pred CCchhHHHHHHHHccCchHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccccc
Q 012530 1 MDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWT 80 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~~ 80 (461)
+|+|+.+++++|++..++++++||+++++.++++||+|+++|+||+|+|+.+|++++|||.|||||+..++.
T Consensus 107 ~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~d~-------- 178 (541)
T TIGR01315 107 MDHRALAEAEKINATNHNLLRYVGGKMSVEMEIPKVLWLKNNMPPELFARCKFFDLTDFLTWRATGKEIRSF-------- 178 (541)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHhCCeeCcchhHHHHHHHHHhChHHHHHhhhhcchhhhheeeeecchhHhH--------
Confidence 699999999999865457899999999999999999999999999999999999999999999999976543
Q ss_pred ccccccccccccccccc---cccCCCCHHHHHHcCCCccccccccccCccccCCCCcccCc-cCHHHHHHcCCCCCCcEe
Q 012530 81 YLGHAHMQQMNEKGFRD---MEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSG-LTPAAAKELGLVPGTPVG 156 (461)
Q Consensus 81 ~~~~~~~s~as~t~l~d---~~~~~W~~~ll~~~gi~~~~~~~lp~l~~~~~~~g~~ig~~-v~~~~A~~~GL~~g~pV~ 156 (461)
++++.+++|| +++++||+++++.+||+....++||++.|+++.+++++| + |++++|+++||++||||+
T Consensus 179 -------~~as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~~~~~~G-~~v~~~~A~~~GL~~g~pV~ 250 (541)
T TIGR01315 179 -------CSVVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSPGELVG-GGLTAEAAQELGLPAGTAVG 250 (541)
T ss_pred -------hHHhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCcccCCCcccc-cccCHHHHHHhCCCCCCeEe
Confidence 3455667777 799999999999999995211124444456788999998 6 999999999999999999
Q ss_pred echhhhhhhccCccc--ccCccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCeeEecccc
Q 012530 157 TSLIDAHAGGVGVME--SVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQ 234 (461)
Q Consensus 157 ~g~~D~~aa~~g~~~--~~~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (461)
+|++|++|+++|+++ ..++ +.....++++.+++|||+++..+.+++..++..+.++.++..++.|++++++
T Consensus 251 ~g~~D~~aa~lG~g~~~~~~~-------g~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (541)
T TIGR01315 251 SGLIDAHAGWIGTVGAKVAEN-------GDVSQAFTRLAAVAGTSTCHMAMTKGPVFVPGVWGPYRDALIPGYWLAEGGQ 323 (541)
T ss_pred echHhhhcccccccccccccc-------ccccCCCCcEEEEecCceEEEEecCCCccCCceeecccCccCCCceEEecCc
Confidence 999999999999844 2320 0000001388999999999888887776666554433245668899999999
Q ss_pred cchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCC--cccCCCCCeEEccCCCCCCCCCCCCCCce
Q 012530 235 SATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP--FVAALTEDIHVLPDFHGNRSPIADPKSKG 312 (461)
Q Consensus 235 ~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p--~~~~g~~gl~f~P~l~Ger~P~~d~~a~g 312 (461)
+++|.+++||++++...++........+.+.|+.|++.+++++.. .| .++++++|++|+|||.|+|+|+|||++||
T Consensus 324 ~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~gl~flP~l~G~r~P~~dp~arG 401 (541)
T TIGR01315 324 SAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAK--TNAPSISYLVRHFHVYPDLWGNRSPIADPNMRG 401 (541)
T ss_pred cchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhh--cccCccccCCCceEEccccccCcCCCCCCCCce
Confidence 999999999999874222211111122235688887766554432 11 00023589999999999999999999999
Q ss_pred eEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchh
Q 012530 313 IICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVL 392 (461)
Q Consensus 313 ~~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~a 392 (461)
+|+||+.+|++.++++++||++|||||++|++++.|++.|.++++|+++||++||++|+||+|||+|+||++++..|+++
T Consensus 402 ~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a 481 (541)
T TIGR01315 402 VIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVNEAVL 481 (541)
T ss_pred EEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChhHHHH
Confidence 99999999999777778999999999999999999998888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhH-HHHHHHHHHHHHHHHHHHHH
Q 012530 393 LGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVK-KYHDAKYLIFRELFEQQVSQ 452 (461)
Q Consensus 393 lGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~-~~y~~~y~~y~~l~~~~~~~ 452 (461)
+|||++|++++|.|+|++++.+.+++..++|+| +++++ +.|+++|++|+++|++++.+
T Consensus 482 lGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P--~~~~~~~~Y~~~y~~y~~l~~~~~~~ 540 (541)
T TIGR01315 482 HGAAMLGAKAAGTTESLWDAMDRMSKPGKTVWP--RGDPAKKLHDRKYEIFLQLARTQQEY 540 (541)
T ss_pred HHHHHHHHHhcCccCCHHHHHHHhccCCcEEcC--CcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988888888899999 99999 99999999999999998876
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
| >KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
| >KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
| >COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
| >PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
| >KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P | Back alignment and domain information |
|---|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
| >PLN02920 pantothenate kinase 1 | Back alignment and domain information |
|---|
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
| >PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway | Back alignment and domain information |
|---|
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
| >PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors [] | Back alignment and domain information |
|---|
| >TIGR03281 methan_mark_12 putative methanogenesis marker protein 12 | Back alignment and domain information |
|---|
| >COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK09604 UGMP family protein; Validated | Back alignment and domain information |
|---|
| >PRK14878 UGMP family protein; Provisional | Back alignment and domain information |
|---|
| >KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
| >TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF | Back alignment and domain information |
|---|
| >KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional | Back alignment and domain information |
|---|
| >PLN02902 pantothenate kinase | Back alignment and domain information |
|---|
| >TIGR03723 bact_gcp putative glycoprotease GCP | Back alignment and domain information |
|---|
| >PRK00976 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG3426 Butyrate kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 461 | ||||
| 3gg4_A | 554 | The Crystal Structure Of Glycerol Kinase From Yersi | 1e-107 | ||
| 3qdk_A | 572 | Structural Insight On Mechanism And Diverse Substra | 5e-22 | ||
| 2dpn_A | 495 | Crystal Structure Of The Glycerol Kinase From Therm | 6e-12 | ||
| 1bwf_Y | 501 | Escherichia Coli Glycerol Kinase Mutant With Bound | 2e-07 | ||
| 1gla_G | 501 | Structure Of The Regulatory Complex Of Escherichia | 2e-07 | ||
| 1bu6_O | 501 | Crystal Structures Of Escherichia Coli Glycerol Kin | 2e-07 | ||
| 3ezw_A | 526 | Crystal Structure Of A Hyperactive Escherichia Coli | 2e-07 | ||
| 2zf5_O | 497 | Crystal Structure Of Highly Thermostable Glycerol K | 4e-07 | ||
| 3h45_X | 506 | Glycerol Kinase H232e With Ethylene Glycol Length = | 5e-07 | ||
| 3h3n_X | 506 | Glycerol Kinase H232r With Glycerol Length = 506 | 5e-07 | ||
| 3flc_O | 518 | Crystal Structure Of The His-Tagged H232r Mutant Of | 5e-07 | ||
| 1xup_O | 487 | Enterococcus Casseliflavus Glycerol Kinase Complexe | 6e-07 | ||
| 3d7e_O | 505 | Enterococcus Casseliflavus Glycerol Kinase Mutant H | 6e-07 | ||
| 1r59_O | 505 | Enterococcus Casseliflavus Glycerol Kinase Length = | 6e-07 | ||
| 3g25_A | 501 | 1.9 Angstrom Crystal Structure Of Glycerol Kinase ( | 1e-06 | ||
| 2d4w_A | 504 | Crystal Structure Of Glycerol Kinase From Cellulomo | 5e-06 | ||
| 3ifr_A | 508 | The Crystal Structure Of Xylulose Kinase From Rhodo | 2e-04 | ||
| 2itm_A | 484 | Crystal Structure Of The E. Coli Xylulose Kinase Co | 2e-04 | ||
| 4e1j_A | 520 | Crystal Structure Of Glycerol Kinase In Complex Wit | 4e-04 | ||
| 2w41_A | 507 | Crystal Structure Of Plasmodium Falciparum Glycerol | 8e-04 | ||
| 2w40_A | 503 | Crystal Structure Of Plasmodium Falciparum Glycerol | 8e-04 | ||
| 3gbt_A | 504 | Crystal Structure Of Gluconate Kinase From Lactobac | 8e-04 |
| >pdb|3GG4|A Chain A, The Crystal Structure Of Glycerol Kinase From Yersinia Pseudotuberculosis Length = 554 | Back alignment and structure |
|
| >pdb|3QDK|A Chain A, Structural Insight On Mechanism And Diverse Substrate Selection Strategy Of Ribulokinase Length = 572 | Back alignment and structure |
| >pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus Thermophilus Hb8 Length = 495 | Back alignment and structure |
| >pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp Analog Showing Substantial Domain Motion Length = 501 | Back alignment and structure |
| >pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli Iiiglc With Glycerol Kinase Length = 501 | Back alignment and structure |
| >pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And The Mutant A65t In An Inactive Tetramer: Conformational Changes And Implications For Allosteric Regulation Length = 501 | Back alignment and structure |
| >pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices Length = 526 | Back alignment and structure |
| >pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase From A Hyperthermophilic Archaeon Length = 497 | Back alignment and structure |
| >pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol Length = 506 | Back alignment and structure |
| >pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol Length = 506 | Back alignment and structure |
| >pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of Glycerol Kinase From Enterococcus Casseliflavus With Glycerol Length = 518 | Back alignment and structure |
| >pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With Glycerol Length = 487 | Back alignment and structure |
| >pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant His232ala Complexed With Glycerol Length = 505 | Back alignment and structure |
| >pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Length = 505 | Back alignment and structure |
| >pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk) From Staphylococcus Aureus In Complex With Glycerol. Length = 501 | Back alignment and structure |
| >pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp. Nt3060 Length = 504 | Back alignment and structure |
| >pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From Rhodospirillum Rubrum Length = 508 | Back alignment and structure |
| >pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed With Xylulose Length = 484 | Back alignment and structure |
| >pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With Glycerol From Sinorhizobium Meliloti 1021 Length = 520 | Back alignment and structure |
| >pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase With Adp Length = 507 | Back alignment and structure |
| >pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase With Bound Glycerol Length = 503 | Back alignment and structure |
| >pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus Acidophilus Length = 504 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Length = 554 | Back alignment and structure |
|---|
Score = 523 bits (1350), Expect = 0.0
Identities = 214/459 (46%), Positives = 312/459 (67%), Gaps = 24/459 (5%)
Query: 1 MDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWL 60
MDHRA+ QAE+IN+ PVL++ GG +SPEMQ PKLLW+K+++ +WS V DL D+L
Sbjct: 112 MDHRAITQAERINATKHPVLEFVGGVISPEMQTPKLLWLKQHMPNTWSNVGHLFDLPDFL 171
Query: 61 SYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH 120
++RAT D+TRSLC+TVCKWTYLGH WD +++ +GL DL+D +
Sbjct: 172 TWRATKDETRSLCSTVCKWTYLGHED---------------RWDPSYFKLVGLADLLDNN 216
Query: 121 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEA 180
AKIG +V G PLG GL+ AA E+GL+PGT V S+IDAHAG +G++ + + A
Sbjct: 217 AAKIGATVKPMGAPLGHGLSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVTGENA 276
Query: 181 KENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGAL 240
R+ L+ GTST HMA+SR+ FI G+WGP++SA++P++WL EGGQSATGAL
Sbjct: 277 NF------DRRIALIGGTSTAHMAMSRSAHFISGIWGPYYSAILPEYWLNEGGQSATGAL 330
Query: 241 LDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHG 300
+D+II++H +L +A ++ +++E LN L M E + +A LT DIH+LP FHG
Sbjct: 331 IDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGEPEN--IAFLTNDIHMLPYFHG 388
Query: 301 NRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLA 360
NRSP A+P GII G+ L ++ + +AL YLAT+Q +A GTRHI+E N +G+ IDT++A
Sbjct: 389 NRSPRANPNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMA 448
Query: 361 CGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAG 420
GG KNP+F+Q+HA+ GC ++LP E+E++LLG+A++G VAA + SL EAM AM+ G
Sbjct: 449 SGGGTKNPIFVQEHANATGCAMLLPEESEAMLLGSAMMGTVAAGVFESLPEAMAAMSRIG 508
Query: 421 QVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQA 459
+ + P + K+K Y+D KY +F +++ + +++M +
Sbjct: 509 KTVTPQTN-KIKAYYDRKYRVFHQMYHDHMRYQALMQEG 546
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} Length = 508 | Back alignment and structure |
|---|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511 | Back alignment and structure |
|---|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484 | Back alignment and structure |
|---|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 | Back alignment and structure |
|---|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Length = 504 | Back alignment and structure |
|---|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Length = 489 | Back alignment and structure |
|---|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} Length = 482 | Back alignment and structure |
|---|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Length = 501 | Back alignment and structure |
|---|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Length = 506 | Back alignment and structure |
|---|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} Length = 497 | Back alignment and structure |
|---|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} Length = 520 | Back alignment and structure |
|---|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Length = 504 | Back alignment and structure |
|---|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Length = 503 | Back alignment and structure |
|---|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Length = 495 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 100.0 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 100.0 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 100.0 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 100.0 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 100.0 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 100.0 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 100.0 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 100.0 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 100.0 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 100.0 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 100.0 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 100.0 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 100.0 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 100.0 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 100.0 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 100.0 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 100.0 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 100.0 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 100.0 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 99.36 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 97.44 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 97.33 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 97.3 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 97.28 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 97.23 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 97.21 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 97.21 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 97.07 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 96.88 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 96.45 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 96.29 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 96.06 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 95.37 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 95.34 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 94.96 | |
| 3qbx_A | 371 | Anhydro-N-acetylmuramic acid kinase; acetate and s | 94.88 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 94.44 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 94.08 | |
| 3cqy_A | 370 | Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1 | 94.0 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 93.25 | |
| 3ttc_A | 657 | HYPF, transcriptional regulatory protein; Zn finge | 93.04 | |
| 3vth_A | 761 | Hydrogenase maturation factor; carbamoyltransfer, | 92.99 | |
| 4g9i_A | 772 | Hydrogenase maturation protein HYPF; zinc finger, | 92.72 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 91.32 | |
| 3ven_A | 576 | O-carbamoyltransferase TOBZ; antibiotic biosynthes | 90.53 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 82.93 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 82.68 |
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-79 Score=651.49 Aligned_cols=427 Identities=46% Similarity=0.818 Sum_probs=366.3
Q ss_pred CCchhHHHHHHHHccCchHHhhhCCCCCCCChHHHHHHHHhhchhhhhccceeeechhhhhhhhcCCCCCcccccccccc
Q 012530 1 MDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWT 80 (461)
Q Consensus 1 ~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~~ 80 (461)
+|+|+.++++++++..++++++||++++++++++||+||++|+||+|+|+.+|++++|||.|+|||+...+
T Consensus 112 ~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~Pe~~~~~~~~~~~~dyl~~~LTG~~~~s--------- 182 (554)
T 3l0q_A 112 MDHRAITQAERINATKHPVLEFVGGVISPEMQTPKLLWLKQHMPNTWSNVGHLFDLPDFLTWRATKDETRS--------- 182 (554)
T ss_dssp TCCTTHHHHHHHHHHTCGGGGGBTTCCCTTSHHHHHHHHHHHCHHHHHHEEEEEEHHHHHHHHHHSCCCEE---------
T ss_pred cccchHHHHHHHHHhHHHHHHHhCCCCChhhHHHHHHHHHHhChHHHHHhceEEcHHHHHHHHHhCCcccc---------
Confidence 69999999999988767899999999999999999999999999999999999999999999999997533
Q ss_pred cccccccccccccc--ccccccCCCCHHHHHHcCCCcccc---ccccccCccccCCCCccc-CccCHHHHHHcCCCCCCc
Q 012530 81 YLGHAHMQQMNEKG--FRDMEACGWDDEFWEEIGLGDLID---GHHAKIGRSVAFPGHPLG-SGLTPAAAKELGLVPGTP 154 (461)
Q Consensus 81 ~~~~~~~s~as~t~--l~d~~~~~W~~~ll~~~gi~~~~~---~~lp~l~~~~~~~g~~ig-~~v~~~~A~~~GL~~g~p 154 (461)
++|.++ +||.++++||+++|+.+||++.+. ++|| |+++++++++| . |++++|+++||++|||
T Consensus 183 --------~as~t~~~~~d~~~~~W~~~ll~~~gi~~~~~~~~~~Lp---~~i~~~~~~~G~~-lt~~~A~~~GL~~g~p 250 (554)
T 3l0q_A 183 --------LCSTVCKWTYLGHEDRWDPSYFKLVGLADLLDNNAAKIG---ATVKPMGAPLGHG-LSQRAASEMGLIPGTA 250 (554)
T ss_dssp --------HHHHHHHSCCBTTTTBCCHHHHHHHTCGGGGHHHHTTTC---SCEECTTCBCTTS-SCHHHHHHHTCCTTCE
T ss_pred --------ccchhhccccccccCCCCHHHHHHcCCccccchhHHhCC---CcccCCcCeeCcc-cCHHHHHHhCCCCCCe
Confidence 344444 378899999999999999986320 0234 34778899998 6 9999999999999999
Q ss_pred EeechhhhhhhccCccccc-CccchhhhhhhhhhccCeEEEEecccceeeeeccCccccCCccccccccccCCeeEeccc
Q 012530 155 VGTSLIDAHAGGVGVMESV-PESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGG 233 (461)
Q Consensus 155 V~~g~~D~~aa~~g~~~~~-~~~~~~~~~~~~~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (461)
|++|++|++|+++|+.|.. + + +.....++++.+++|||+++..++++|..+++.+.+++++..|+.|+++++
T Consensus 251 V~~g~gD~~aa~lg~~G~~~~------~-G~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 323 (554)
T 3l0q_A 251 VSVSIIDAHAGTIGILGASGV------T-GENANFDRRIALIGGTSTAHMAMSRSAHFISGIWGPYYSAILPEYWLNEGG 323 (554)
T ss_dssp EBCCEEHHHHHHHHHTTCCCT------T-SCCCCTTTEEEEECSSSEEEEEEESSCCCCTTSEEEEETSSSTTCEEEEEE
T ss_pred EEEeChHHHhHHhhccccccC------C-CccccccceEEEEecchheeeeecCCccccCCcceeecccccCCceEecch
Confidence 9999999999998853332 1 1 000000127889999999999999988877877766566777899999999
Q ss_pred ccchhHHHHHHHHhcccchHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCcccCCCCCeEEccCCCCCCCCCCCCCCcee
Q 012530 234 QSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGI 313 (461)
Q Consensus 234 ~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~f~P~l~Ger~P~~d~~a~g~ 313 (461)
++++|.+++||++.|....++...++..+.+.|+.|++++++++++. |....+++|++|+|||.|+|+|+|||++||+
T Consensus 324 ~~~~G~~~~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~gl~flP~~~Ger~P~~d~~arg~ 401 (554)
T 3l0q_A 324 QSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGEP--ENIAFLTNDIHMLPYFHGNRSPRANPNLTGI 401 (554)
T ss_dssp ESCSHHHHHHHHHTSTTHHHHHHHHHHTTCCHHHHHHHHHHHHHSSG--GGGGGGGTTCCEECCTTCBCSSSCBTTCCCE
T ss_pred hhhhHHHHHHHHHhcccchHHHHHHHhcCCCHHHHHHHHHHhcCCCC--CccccccCceEEcccccCCCCCCCCCCCcEE
Confidence 99999999999999865445555555556789999999888775321 1000137999999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEeccCCCCHHHHHHHHhhhCCceeecCCCCchhH
Q 012530 314 ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLL 393 (461)
Q Consensus 314 ~~Gl~~~~~~~~l~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~al 393 (461)
|+|++..|++.|++|++||++|||||++|++++.|++.|.++++|+++||++||++|+||+|||+|+||++++..|++|+
T Consensus 402 ~~Gl~~~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~~~~~e~~al 481 (554)
T 3l0q_A 402 ITGLKLSTTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANATGCAMLLPEESEAMLL 481 (554)
T ss_dssp ECSCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHHCCEEEEESCSCHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhhCCeEEecCCCcchHH
Confidence 99999999999988889999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012530 394 GAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQ 458 (461)
Q Consensus 394 GaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~~~~~~~ 458 (461)
|||++|++++|.|+|++++.+++++..++|+|. |+++++.|+++|++|+++|+++++++++|++
T Consensus 482 GAA~lA~~a~G~~~~~~~a~~~~~~~~~~~~P~-~~~~~~~Y~~~y~~y~~l~~~~~~~~~~~~~ 545 (554)
T 3l0q_A 482 GSAMMGTVAAGVFESLPEAMAAMSRIGKTVTPQ-TNKIKAYYDRKYRVFHQMYHDHMRYQALMQE 545 (554)
T ss_dssp HHHHHHHHHTTSSSSHHHHHHHHCCEEEEECCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCcCCHHHHHHHhcCCCcEEeCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999888898888999992 3689999999999999999999999999875
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
| >3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A* | Back alignment and structure |
|---|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
| >3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
| >3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A | Back alignment and structure |
|---|
| >3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A | Back alignment and structure |
|---|
| >4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
| >3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A* | Back alignment and structure |
|---|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 461 | ||||
| d1r59o2 | 235 | c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus | 3e-16 | |
| d1r59o1 | 252 | c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus c | 2e-08 | |
| d2p3ra1 | 252 | c.55.1.4 (A:2-253) Glycerol kinase {Escherichia co | 9e-08 | |
| d1huxa_ | 259 | c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase comp | 8e-04 |
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Score = 75.7 bits (185), Expect = 3e-16
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 10/152 (6%)
Query: 292 IHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 351
++V+P F G +P D +++G + G+T ++++ AT+Q +AY ++ +++
Sbjct: 87 VYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVR---ATLQAVAYQSKDVIDTMKKD 143
Query: 352 -GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLI 410
G I L GG AKN L +Q ADI+ + E+ LGAA L +A + L
Sbjct: 144 SGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL- 202
Query: 411 EAMKAMNAAGQVIHPSKDPKV-----KKYHDA 437
+ +K+M GQ+ P + + + A
Sbjct: 203 DELKSMAEEGQMFTPEMPAEERDNLYEGWKQA 234
|
| >d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 252 | Back information, alignment and structure |
|---|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Length = 259 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 100.0 | |
| d2p3ra1 | 252 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1r59o1 | 252 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 99.89 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 97.36 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 97.33 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 97.16 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 96.88 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 96.69 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 95.08 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 94.06 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 87.53 | |
| d2aa4a2 | 170 | N-acetylmannosamine kinase NanK {Escherichia coli | 86.02 | |
| d2ap1a1 | 186 | Putative regulator protein YcfX {Salmonella typhim | 82.48 | |
| d2gupa2 | 175 | Hypothetical protein SP2142 {Streptococcus pneumon | 81.07 | |
| d1z05a2 | 197 | Transcriptional regulator VC2007 {Vibrio cholerae | 80.09 |
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
| >d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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| >d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
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| >d1z05a2 c.55.1.10 (A:209-405) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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