Citrus Sinensis ID: 012532

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
MFSLNRSAFLNNPASISGSFPDKHRRILPTRVVVAGSSNRDKSNGSLLMATDESTATLKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNV
ccccccccccccccccccccccccccccccEEEEccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccEEccccHHHHHccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccHHHHHHHHccccccccEEEEEccccccHHHHHHcccccccEEEEEEcccEEEccccccccccccccHHHEEHHHcccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHHHHccccHHHHHccEEEEccccccccccccccccccccccccccccccHHHHHcc
cccccccccccccccccccccccccEEcccEEEEEccccccccccEEEEEcccccccHHHHcccccEEcccccccccccccccccccccccccccccEEEcccccHHHHccccccHHHccHHHHHHcccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHcccHHHHHHHcHHHHccccccEEEEHHHcccHHHHHcccccccccEEEEEccccEcccEccHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHccccccHHHHHHHEEEEccccEEEcccccccHHHHHHHHcccccHHHHHHHHcc
mfslnrsaflnnpasisgsfpdkhrrilptrvvvagssnrdksngsllmatdeSTATLKEMRDGyaevvdpksgvsggvqdvygedtatedqpvtpwsvsvasgysllrdphhnkglafsekernshylrgllpptviSQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELlpivytptvgeACQKygsiysrpqgvfislKDKGKVLEVLRNWPEKNIQVIVVTdgerilglgdlgchgmgipvgKLSLYTalggirpsaclpvtidvgtnnekllddefYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYgtthlvfnddiqGTASVVLAGLISAMKflggsladqRFLFLGAGEAGTGIAELIALEIskqtnmpleetrkKIWLVDSKGLIVSSRLESlqhfkkpwahehepvKELVDAVNV
mfslnrsaflnnpasisgsfpdkhrriLPTRvvvagssnrdksngsllmatdeSTATLKEMRDGYAevvdpksgvsgGVQDVYGEdtatedqpvtpWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVlrnwpekniqviVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEIskqtnmpleetrkkiwlvDSKGLIVSSRLESLQHfkkpwahehepvkelvdavnv
MFSLNRSAFLNNPASISGSFPDKHRRILPTRVVVAGSSNRDKSNGSLLMATDESTATLKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNV
***********************************************************************************************PWSVSVASGYSLLR****************SHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW****************
****************************************************************************************TEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNV
MFSLNRSAFLNNPASISGSFPDKHRRILPTRVVVAGSSNRDKSNGSLLMATDESTATLKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNV
***********************HRRILPTRVVVAGSSNRDKSNGSLLMA***STATLKE****YAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNV
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MFSLNRSAFLNNPASISGSFPDKHRRILPTRVVVAGSSNRDKSNGSLLMATDESTATLKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query461 2.2.26 [Sep-21-2011]
Q9CA83 646 NADP-dependent malic enzy yes no 0.986 0.704 0.763 0.0
P34105 591 NADP-dependent malic enzy yes no 0.878 0.685 0.827 0.0
P36444 647 NADP-dependent malic enzy N/A no 0.854 0.608 0.835 0.0
P22178 648 NADP-dependent malic enzy N/A no 0.984 0.700 0.742 0.0
P51615 591 NADP-dependent malic enzy no no 0.880 0.686 0.800 0.0
Q9LYG3 588 NADP-dependent malic enzy no no 0.854 0.670 0.789 0.0
P37223 585 NADP-dependent malic enzy N/A no 0.856 0.675 0.789 0.0
P12628 589 NADP-dependent malic enzy N/A no 0.830 0.650 0.809 0.0
P37222 573 NADP-dependent malic enzy N/A no 0.839 0.675 0.806 0.0
P43279 639 NADP-dependent malic enzy no no 0.830 0.599 0.798 0.0
>sp|Q9CA83|MAOP4_ARATH NADP-dependent malic enzyme 4, chloroplastic OS=Arabidopsis thaliana GN=NADP-ME4 PE=1 SV=1 Back     alignment and function desciption
 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/466 (76%), Positives = 407/466 (87%), Gaps = 11/466 (2%)

Query: 1   MFSLNRSAFLNNPA--SISGSFPDKHRRILPT-----RVVVAGSSNRDKSNGSLLMATDE 53
           M SL  S FLN       S     +  R + T     RV  +  SN+D + GS+L+   E
Sbjct: 1   MISLTPSLFLNKTVVPGCSTRLSLRQPRTIITPPASLRVFSSLGSNQDPT-GSVLI---E 56

Query: 54  STATLKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHH 113
           +TAT     +  A  + PKS VSGGVQDVYGED ATED P+TPWS+SVASGY+LLRDPHH
Sbjct: 57  TTATSSSSLETSAADIVPKSTVSGGVQDVYGEDAATEDMPITPWSLSVASGYTLLRDPHH 116

Query: 114 NKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQK 173
           NKGLAFS +ER++HYLRGLLPPTVISQ+LQVKK++H +RQYQVPLQKYMAMMDLQE N++
Sbjct: 117 NKGLAFSHRERDAHYLRGLLPPTVISQDLQVKKIMHTLRQYQVPLQKYMAMMDLQETNER 176

Query: 174 LFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKN 233
           LFYKLLID+VEELLP++YTPTVGEACQKYGSI+ RPQG+FISLK+KGK+ EVLRNWPEKN
Sbjct: 177 LFYKLLIDHVEELLPVIYTPTVGEACQKYGSIFLRPQGLFISLKEKGKIHEVLRNWPEKN 236

Query: 234 IQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLD 293
           IQVIVVTDGERILGLGDLGC GMGIPVGKLSLYTALGG+RPSACLPVTIDVGTNNEKLL+
Sbjct: 237 IQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEKLLN 296

Query: 294 DEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHL 353
           DEFYIGLRQ+RA G+EY+EL+HEFMTAVKQNYGE+++IQFEDFANHNAFDLL KYGTTHL
Sbjct: 297 DEFYIGLRQRRATGEEYSELMHEFMTAVKQNYGEKVVIQFEDFANHNAFDLLAKYGTTHL 356

Query: 354 VFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMP 413
           VFNDDIQGTASVVLAGLI+A++F+GGSL+D RFLFLGAGEAGTGIAELIALEISK++++P
Sbjct: 357 VFNDDIQGTASVVLAGLIAALRFVGGSLSDHRFLFLGAGEAGTGIAELIALEISKKSHIP 416

Query: 414 LEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAV 459
           LEE RK IWLVDSKGLIVSSR ES+QHFKKPWAH+HEP++ELVDAV
Sbjct: 417 LEEARKNIWLVDSKGLIVSSRKESIQHFKKPWAHDHEPIRELVDAV 462
The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 0
>sp|P34105|MAOX_POPTR NADP-dependent malic enzyme OS=Populus trichocarpa PE=2 SV=3 Back     alignment and function description
>sp|P36444|MAOC_FLAPR NADP-dependent malic enzyme, chloroplastic OS=Flaveria pringlei GN=MODA PE=2 SV=1 Back     alignment and function description
>sp|P22178|MAOC_FLATR NADP-dependent malic enzyme, chloroplastic OS=Flaveria trinervia GN=MOD1 PE=2 SV=1 Back     alignment and function description
>sp|P51615|MAOX_VITVI NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1 Back     alignment and function description
>sp|Q9LYG3|MAOP2_ARATH NADP-dependent malic enzyme 2 OS=Arabidopsis thaliana GN=NADP-ME2 PE=1 SV=1 Back     alignment and function description
>sp|P37223|MAOX_MESCR NADP-dependent malic enzyme OS=Mesembryanthemum crystallinum GN=MOD1 PE=2 SV=1 Back     alignment and function description
>sp|P12628|MAOX_PHAVU NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1 Back     alignment and function description
>sp|P37222|MAOC_SOLLC NADP-dependent malic enzyme, chloroplastic (Fragment) OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|P43279|MAOC_ORYSJ NADP-dependent malic enzyme, chloroplastic OS=Oryza sativa subsp. japonica GN=ME6 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
390533881 645 NADP-dependent malic protein [Dimocarpus 0.995 0.711 0.861 0.0
255549832 641 malic enzyme, putative [Ricinus communis 0.978 0.703 0.794 0.0
8118507 641 NADP-dependent malic protein [Ricinus co 0.978 0.703 0.792 0.0
404313448 640 cytosolic NADP-malic protein [Prunus arm 0.982 0.707 0.794 0.0
297839957 646 NADP-malic enzyme 4 [Arabidopsis lyrata 0.986 0.704 0.770 0.0
15219980 646 NADP-malic enzyme 4 [Arabidopsis thalian 0.986 0.704 0.763 0.0
339958975 640 NADP-dependent malic enzyme [Hylocereus 0.978 0.704 0.774 0.0
225442481 640 PREDICTED: NADP-dependent malic enzyme [ 0.934 0.673 0.801 0.0
1561774 640 malate dehydrogenase [Vitis vinifera] 0.934 0.673 0.801 0.0
118486015 649 unknown [Populus trichocarpa] 0.984 0.699 0.771 0.0
>gi|390533881|gb|AFM08812.1| NADP-dependent malic protein [Dimocarpus longan] Back     alignment and taxonomy information
 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/463 (86%), Positives = 429/463 (92%), Gaps = 4/463 (0%)

Query: 1   MFSLNRSAFLNNPASISGS---FPDKHRRILPTRVVVAGSSNRDKSNGSLLMATDESTAT 57
           MFSLNRS FLNN  SISG    F    RR LPT+VV   +SNR +SN S+LM     T  
Sbjct: 1   MFSLNRSCFLNN-TSISGRSSPFSHNQRRRLPTKVVALSTSNRVQSNVSVLMENHSGTTA 59

Query: 58  LKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGL 117
           L+EMRDGYAEVVDPKS V+GGVQDVYGEDTATED PVTPWSVSVASGYSLLRDPHHNKGL
Sbjct: 60  LQEMRDGYAEVVDPKSAVTGGVQDVYGEDTATEDMPVTPWSVSVASGYSLLRDPHHNKGL 119

Query: 118 AFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYK 177
           AF++KERNSHYL GLLPPTV+SQELQVKKM+HNIR YQVPLQKYMAMMDLQERNQ+LFYK
Sbjct: 120 AFNDKERNSHYLCGLLPPTVVSQELQVKKMMHNIRNYQVPLQKYMAMMDLQERNQRLFYK 179

Query: 178 LLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVI 237
           LL+D+VEELLP+VYTPTVGEACQKYGSI++RPQG+FISLK+KGK+LEVLRNWPEKNIQVI
Sbjct: 180 LLMDHVEELLPVVYTPTVGEACQKYGSIFNRPQGLFISLKEKGKILEVLRNWPEKNIQVI 239

Query: 238 VVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFY 297
           VVTDGERILGLGDLGC GMGIPVGKLSLYTALGG+RPSACLP+TIDVGTNNE LL+DEFY
Sbjct: 240 VVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNETLLNDEFY 299

Query: 298 IGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFND 357
           IGLRQKRA GQEYAELLHEFMTAVKQNYGE+IL+QFEDFANHNAF+LLEKYGTTHLVFND
Sbjct: 300 IGLRQKRATGQEYAELLHEFMTAVKQNYGEKILVQFEDFANHNAFNLLEKYGTTHLVFND 359

Query: 358 DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEET 417
           DIQGTASVVLAGLISAMKF+GGSLADQ+FLFLGAGEAGTGIAELIALEISKQTNMP+EE 
Sbjct: 360 DIQGTASVVLAGLISAMKFVGGSLADQKFLFLGAGEAGTGIAELIALEISKQTNMPVEEA 419

Query: 418 RKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460
           RKK+WLVDSKGLIVSSR ESLQHFKKPWAH+HEPV ELVDAVN
Sbjct: 420 RKKVWLVDSKGLIVSSRSESLQHFKKPWAHDHEPVTELVDAVN 462

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255549832|ref|XP_002515967.1| malic enzyme, putative [Ricinus communis] gi|223544872|gb|EEF46387.1| malic enzyme, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|8118507|gb|AAF73006.1|AF262997_1 NADP-dependent malic protein [Ricinus communis] Back     alignment and taxonomy information
>gi|404313448|gb|AFR54473.1| cytosolic NADP-malic protein [Prunus armeniaca] Back     alignment and taxonomy information
>gi|297839957|ref|XP_002887860.1| NADP-malic enzyme 4 [Arabidopsis lyrata subsp. lyrata] gi|297333701|gb|EFH64119.1| NADP-malic enzyme 4 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15219980|ref|NP_178093.1| NADP-malic enzyme 4 [Arabidopsis thaliana] gi|75262265|sp|Q9CA83.1|MAOP4_ARATH RecName: Full=NADP-dependent malic enzyme 4, chloroplastic; Short=AtNADP-ME4; Short=NADP-malic enzyme 4; Flags: Precursor gi|12324574|gb|AAG52235.1|AC011717_3 putative malate oxidoreductase; 93001-96525 [Arabidopsis thaliana] gi|16974613|gb|AAL31209.1| At1g79750/F19K16_27 [Arabidopsis thaliana] gi|22655472|gb|AAM98328.1| At1g79750/F19K16_27 [Arabidopsis thaliana] gi|332198173|gb|AEE36294.1| NADP-malic enzyme 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|339958975|gb|AEK25136.1| NADP-dependent malic enzyme [Hylocereus undatus] Back     alignment and taxonomy information
>gi|225442481|ref|XP_002283814.1| PREDICTED: NADP-dependent malic enzyme [Vitis vinifera] gi|297743201|emb|CBI36068.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|1561774|gb|AAB08874.1| malate dehydrogenase [Vitis vinifera] Back     alignment and taxonomy information
>gi|118486015|gb|ABK94851.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
TAIR|locus:2017854 646 NADP-ME4 "NADP-malic enzyme 4" 0.986 0.704 0.768 1.6e-189
TAIR|locus:2181980 588 NADP-ME2 "NADP-malic enzyme 2" 0.854 0.670 0.789 3.7e-174
TAIR|locus:2180547 588 NADP-ME3 "NADP-malic enzyme 3" 0.865 0.678 0.775 1e-171
TAIR|locus:2052045 581 NADP-ME1 "NADP-malic enzyme 1" 0.845 0.671 0.797 1.9e-170
MGI|MGI:97043 572 Me1 "malic enzyme 1, NADP(+)-d 0.759 0.611 0.571 3.6e-105
RGD|3074 572 Me1 "malic enzyme 1, NADP(+)-d 0.759 0.611 0.565 1.6e-104
UNIPROTKB|P13697 572 Me1 "NADP-dependent malic enzy 0.759 0.611 0.565 1.6e-104
UNIPROTKB|F1P0Y6 576 ME1 "Malic enzyme" [Gallus gal 0.785 0.628 0.552 2e-104
UNIPROTKB|Q29558 557 ME1 "NADP-dependent malic enzy 0.759 0.628 0.565 4.1e-104
UNIPROTKB|P48163 572 ME1 "NADP-dependent malic enzy 0.759 0.611 0.565 6.7e-104
TAIR|locus:2017854 NADP-ME4 "NADP-malic enzyme 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1837 (651.7 bits), Expect = 1.6e-189, P = 1.6e-189
 Identities = 358/466 (76%), Positives = 407/466 (87%)

Query:     1 MFSLNRSAFLNN---PA-SISGSFPDKHRRILPT---RVVVAGSSNRDKSNGSLLMATDE 53
             M SL  S FLN    P  S   S       I P    RV  +  SN+D + GS+L+   E
Sbjct:     1 MISLTPSLFLNKTVVPGCSTRLSLRQPRTIITPPASLRVFSSLGSNQDPT-GSVLI---E 56

Query:    54 STATLKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHH 113
             +TAT     +  A  + PKS VSGGVQDVYGED ATED P+TPWS+SVASGY+LLRDPHH
Sbjct:    57 TTATSSSSLETSAADIVPKSTVSGGVQDVYGEDAATEDMPITPWSLSVASGYTLLRDPHH 116

Query:   114 NKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQK 173
             NKGLAFS +ER++HYLRGLLPPTVISQ+LQVKK++H +RQYQVPLQKYMAMMDLQE N++
Sbjct:   117 NKGLAFSHRERDAHYLRGLLPPTVISQDLQVKKIMHTLRQYQVPLQKYMAMMDLQETNER 176

Query:   174 LFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKN 233
             LFYKLLID+VEELLP++YTPTVGEACQKYGSI+ RPQG+FISLK+KGK+ EVLRNWPEKN
Sbjct:   177 LFYKLLIDHVEELLPVIYTPTVGEACQKYGSIFLRPQGLFISLKEKGKIHEVLRNWPEKN 236

Query:   234 IQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLD 293
             IQVIVVTDGERILGLGDLGC GMGIPVGKLSLYTALGG+RPSACLPVTIDVGTNNEKLL+
Sbjct:   237 IQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEKLLN 296

Query:   294 DEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHL 353
             DEFYIGLRQ+RA G+EY+EL+HEFMTAVKQNYGE+++IQFEDFANHNAFDLL KYGTTHL
Sbjct:   297 DEFYIGLRQRRATGEEYSELMHEFMTAVKQNYGEKVVIQFEDFANHNAFDLLAKYGTTHL 356

Query:   354 VFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMP 413
             VFNDDIQGTASVVLAGLI+A++F+GGSL+D RFLFLGAGEAGTGIAELIALEISK++++P
Sbjct:   357 VFNDDIQGTASVVLAGLIAALRFVGGSLSDHRFLFLGAGEAGTGIAELIALEISKKSHIP 416

Query:   414 LEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAV 459
             LEE RK IWLVDSKGLIVSSR ES+QHFKKPWAH+HEP++ELVDAV
Sbjct:   417 LEEARKNIWLVDSKGLIVSSRKESIQHFKKPWAHDHEPIRELVDAV 462
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004470 "malic enzyme activity" evidence=IEA;ISS
GO:0006108 "malate metabolic process" evidence=IEA;ISS;IDA;TAS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA
GO:0016652 "oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor" evidence=ISS
GO:0046872 "metal ion binding" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0004473 "malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity" evidence=IDA
GO:0006633 "fatty acid biosynthetic process" evidence=TAS
GO:0042803 "protein homodimerization activity" evidence=IDA
GO:0051289 "protein homotetramerization" evidence=IDA
GO:0008270 "zinc ion binding" evidence=IDA
GO:0050897 "cobalt ion binding" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
TAIR|locus:2181980 NADP-ME2 "NADP-malic enzyme 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180547 NADP-ME3 "NADP-malic enzyme 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052045 NADP-ME1 "NADP-malic enzyme 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:97043 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3074 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P13697 Me1 "NADP-dependent malic enzyme" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0Y6 ME1 "Malic enzyme" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q29558 ME1 "NADP-dependent malic enzyme" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P48163 ME1 "NADP-dependent malic enzyme" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P06801MAOX_MOUSE1, ., 1, ., 1, ., 4, 00.57100.75920.6118yesno
P13697MAOX_RAT1, ., 1, ., 1, ., 4, 00.56530.75920.6118yesno
Q29558MAOX_PIG1, ., 1, ., 1, ., 4, 00.56530.75920.6283yesno
P34105MAOX_POPTR1, ., 1, ., 1, ., 4, 00.82750.87850.6852yesno
P22178MAOC_FLATR1, ., 1, ., 1, ., 4, 00.74200.98480.7006N/Ano
P37222MAOC_SOLLC1, ., 1, ., 1, ., 4, 00.80670.83940.6753N/Ano
P37223MAOX_MESCR1, ., 1, ., 1, ., 4, 00.78980.85680.6752N/Ano
Q9CA83MAOP4_ARATH1, ., 1, ., 1, ., 4, 00.76390.98690.7043yesno
P48163MAOX_HUMAN1, ., 1, ., 1, ., 4, 00.56530.75920.6118yesno
P12628MAOX_PHAVU1, ., 1, ., 1, ., 4, 00.80930.83080.6502N/Ano
P36444MAOC_FLAPR1, ., 1, ., 1, ., 4, 00.83500.85460.6089N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.963
4th Layer1.1.1.400.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
PLN03129 581 PLN03129, PLN03129, NADP-dependent malic enzyme; P 0.0
PRK13529 563 PRK13529, PRK13529, malate dehydrogenase; Provisio 1e-178
PTZ00317 559 PTZ00317, PTZ00317, NADP-dependent malic enzyme; P 1e-159
pfam00390182 pfam00390, malic, Malic enzyme, N-terminal domain 1e-102
COG0281 432 COG0281, SfcA, Malic enzyme [Energy production and 8e-64
cd05312 279 cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma 8e-39
pfam03949 255 pfam03949, Malic_M, Malic enzyme, NAD binding doma 2e-34
smart00919 231 smart00919, Malic_M, Malic enzyme, NAD binding dom 2e-31
cd00762 254 cd00762, NAD_bind_malic_enz, NAD(P) binding domain 9e-19
cd05311 226 cd05311, NAD_bind_2_malic_enz, NAD(P) binding doma 7e-13
cd0519186 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding do 5e-08
PRK07232 752 PRK07232, PRK07232, bifunctional malic enzyme oxid 6e-08
PRK12862 763 PRK12862, PRK12862, malic enzyme; Reviewed 1e-07
PRK12861 764 PRK12861, PRK12861, malic enzyme; Reviewed 3e-07
>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional Back     alignment and domain information 
 Score =  766 bits (1980), Expect = 0.0
 Identities = 276/391 (70%), Positives = 329/391 (84%), Gaps = 1/391 (0%)

Query: 70  DPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYL 129
             +   +GGV+DVYGED ATE+QPVTPW V VASGY LLRDP +NKGLAF+E ER+   L
Sbjct: 9   RRRRSAAGGVEDVYGEDAATEEQPVTPW-VRVASGYDLLRDPRYNKGLAFTETERDRLGL 67

Query: 130 RGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPI 189
           RGLLPP V+SQELQVK+ + N+R  + PL KY A+MDLQERN++LFY++LIDN+EELLPI
Sbjct: 68  RGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLIDNIEELLPI 127

Query: 190 VYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLG 249
           VYTPTVGEACQKYGS++ RP+G++ISLKDKG+VL +L+NWPE+++QVIVVTDGERILGLG
Sbjct: 128 VYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLG 187

Query: 250 DLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQE 309
           DLG  GMGIPVGKL LYTA GGIRPSA LPV IDVGTNNEKLL+D FYIGLRQ R  G+E
Sbjct: 188 DLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEE 247

Query: 310 YAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAG 369
           Y EL+ EFM AVKQ +G ++L+QFEDFAN NAF LL++Y TTHL FNDDIQGTA+V LAG
Sbjct: 248 YDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAG 307

Query: 370 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429
           L++A++  GG LADQR LF GAGEAGTGIAELIAL +S+QT +  EE RK+IWLVDSKGL
Sbjct: 308 LLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGL 367

Query: 430 IVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460
           +  SR +SLQ FKKP+AH+HEP   L++AV 
Sbjct: 368 VTKSRKDSLQPFKKPFAHDHEPGASLLEAVK 398

Length = 581
>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional Back     alignment and domain information
>gnl|CDD|215894 pfam00390, malic, Malic enzyme, N-terminal domain Back     alignment and domain information
>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1 Back     alignment and domain information
>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain Back     alignment and domain information
>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain Back     alignment and domain information
>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme Back     alignment and domain information
>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 2 Back     alignment and domain information
>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino acid dehydrogenase-like proteins Back     alignment and domain information
>gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed Back     alignment and domain information
>gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed Back     alignment and domain information
>gnl|CDD|183798 PRK12861, PRK12861, malic enzyme; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 461
KOG1257 582 consensus NADP+-dependent malic enzyme [Energy pro 100.0
PRK13529 563 malate dehydrogenase; Provisional 100.0
PLN03129 581 NADP-dependent malic enzyme; Provisional 100.0
PTZ00317 559 NADP-dependent malic enzyme; Provisional 100.0
PF00390182 malic: Malic enzyme, N-terminal domain; InterPro: 100.0
COG0281 432 SfcA Malic enzyme [Energy production and conversio 100.0
PRK12861 764 malic enzyme; Reviewed 100.0
PRK12862 763 malic enzyme; Reviewed 100.0
PRK07232 752 bifunctional malic enzyme oxidoreductase/phosphotr 100.0
PF03949 255 Malic_M: Malic enzyme, NAD binding domain; InterPr 99.96
cd00762 254 NAD_bind_malic_enz NAD(P) binding domain of malic 99.96
cd05312 279 NAD_bind_1_malic_enz NAD(P) binding domain of mali 99.96
cd05311 226 NAD_bind_2_malic_enz NAD(P) binding domain of mali 99.7
cd0519186 NAD_bind_amino_acid_DH NAD(P) binding domain of am 97.29
PRK14031 444 glutamate dehydrogenase; Provisional 95.41
PRK05476 425 S-adenosyl-L-homocysteine hydrolase; Provisional 95.27
PRK09414 445 glutamate dehydrogenase; Provisional 94.71
PRK14982 340 acyl-ACP reductase; Provisional 94.65
PLN02477 410 glutamate dehydrogenase 94.42
PTZ00079 454 NADP-specific glutamate dehydrogenase; Provisional 94.41
cd01078194 NAD_bind_H4MPT_DH NADP binding domain of methylene 93.9
PRK14030 445 glutamate dehydrogenase; Provisional 93.59
PRK12549284 shikimate 5-dehydrogenase; Reviewed 93.47
PRK12749288 quinate/shikimate dehydrogenase; Reviewed 92.32
TIGR00936 406 ahcY adenosylhomocysteinase. This enzyme hydrolyze 92.2
PRK12548289 shikimate 5-dehydrogenase; Provisional 92.19
PRK08328 231 hypothetical protein; Provisional 91.87
cd01065155 NAD_bind_Shikimate_DH NAD(P) binding domain of Shi 91.79
TIGR01809282 Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO 91.74
PF01488135 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; 91.74
PRK14027283 quinate/shikimate dehydrogenase; Provisional 91.41
cd00401 413 AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado 91.39
cd05213311 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain 91.09
TIGR02853287 spore_dpaA dipicolinic acid synthetase, A subunit. 90.8
PRK00258278 aroE shikimate 5-dehydrogenase; Reviewed 90.75
cd05211 217 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of 90.14
COG0169283 AroE Shikimate 5-dehydrogenase [Amino acid transpo 89.22
PF00899135 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a 88.92
cd05313 254 NAD_bind_2_Glu_DH NAD(P) binding domain of glutama 88.44
PTZ00075 476 Adenosylhomocysteinase; Provisional 87.94
PRK15317 517 alkyl hydroperoxide reductase subunit F; Provision 87.34
TIGR03140 515 AhpF alkyl hydroperoxide reductase, F subunit. Thi 87.31
cd01076 227 NAD_bind_1_Glu_DH NAD(P) binding domain of glutama 87.26
PRK00045 423 hemA glutamyl-tRNA reductase; Reviewed 87.2
PRK08306296 dipicolinate synthase subunit A; Reviewed 87.19
cd01075 200 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l 87.12
TIGR01035 417 hemA glutamyl-tRNA reductase. This enzyme, togethe 87.03
TIGR02354 200 thiF_fam2 thiamine biosynthesis protein ThiF, fami 86.77
PRK12550272 shikimate 5-dehydrogenase; Reviewed 85.95
cd01080168 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of 85.5
PRK08644 212 thiamine biosynthesis protein ThiF; Provisional 85.27
PRK14192283 bifunctional 5,10-methylene-tetrahydrofolate dehyd 85.23
TIGR02356 202 adenyl_thiF thiazole biosynthesis adenylyltransfer 84.99
PRK13940 414 glutamyl-tRNA reductase; Provisional 84.52
COG0373 414 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] 84.46
PRK00676338 hemA glutamyl-tRNA reductase; Validated 84.24
cd00757 228 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 84.24
PRK12475 338 thiamine/molybdopterin biosynthesis MoeB-like prot 84.0
PF07992 201 Pyr_redox_2: Pyridine nucleotide-disulphide oxidor 83.41
TIGR02355 240 moeB molybdopterin synthase sulfurylase MoeB. This 83.25
TIGR00507270 aroE shikimate 5-dehydrogenase. This model finds p 83.09
PRK09310477 aroDE bifunctional 3-dehydroquinate dehydratase/sh 82.74
PRK05600 370 thiamine biosynthesis protein ThiF; Validated 82.72
cd01485 198 E1-1_like Ubiquitin activating enzyme (E1), repeat 82.21
KOG0029 501 consensus Amine oxidase [Secondary metabolites bio 82.02
PRK08223 287 hypothetical protein; Validated 81.84
PRK05690 245 molybdopterin biosynthesis protein MoeB; Provision 81.01
PLN00203 519 glutamyl-tRNA reductase 80.74
cd01492 197 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit 80.51
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=3.5e-154  Score=1196.52  Aligned_cols=379  Identities=62%  Similarity=1.020  Sum_probs=366.1

Q ss_pred             ccCCCCccCCCCCccc-ccccccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhH
Q 012532           82 VYGEDTATEDQPVTPW-SVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQK  160 (461)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~K  160 (461)
                      .++++..+..+...+| ..++.+|+++|+||++|||+|||.+||++|+|||||||.|+|+|+|++||+.+|+++++||+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~k   87 (582)
T KOG1257|consen    8 VYSTAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAK   87 (582)
T ss_pred             cccCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHH
Confidence            3344444444444455 667789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhHHHHhhhChhccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEe
Q 012532          161 YMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVT  240 (461)
Q Consensus       161 y~~L~~L~~rNe~LFY~ll~~~~ee~lPIvYTPtVG~aC~~~s~i~r~p~GlYis~~d~g~i~~il~Nwp~~~v~viVVT  240 (461)
                      |+||++||+|||+|||++|++|++|+||||||||||+|||+||+|||+|+||||||+|+|||.++|+|||.++|++||||
T Consensus        88 y~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVT  167 (582)
T KOG1257|consen   88 YIYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVT  167 (582)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceeeccCCCCCCccccchhhhhhHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHH
Q 012532          241 DGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTA  320 (461)
Q Consensus       241 DGerILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~a  320 (461)
                      ||||||||||||++|||||+|||+||||||||+|++|||||||||||||+||+||||+|+||+|++|++||+|+||||+|
T Consensus       168 DGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~A  247 (582)
T KOG1257|consen  168 DGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEA  247 (582)
T ss_pred             CCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCeeeEEeeCCCccHHHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHH
Q 012532          321 VKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAE  400 (461)
Q Consensus       321 v~~~fGp~~lIqfEDF~~~nAf~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~  400 (461)
                      |+++|||+++||||||+++|||++|+|||++||||||||||||||+|||||+|+|++|++|+|++|||+|||+||+|||+
T Consensus       248 v~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~  327 (582)
T KOG1257|consen  248 VVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIAN  327 (582)
T ss_pred             HHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCChhhhcCcEEEEcCCCccccCCCcCCchhchhcccccCCCCCHHHHhcC
Q 012532          401 LIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNV  461 (461)
Q Consensus       401 li~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~  461 (461)
                      ||+++|+++ |+|+|||++||||||++||||++|+.+++++|++|||+++|+++|+|||+.
T Consensus       328 l~v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~  387 (582)
T KOG1257|consen  328 LIVMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKE  387 (582)
T ss_pred             HHHHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHh
Confidence            999999996 999999999999999999999999878999999999999999999999974

>PRK13529 malate dehydrogenase; Provisional Back     alignment and domain information
>PLN03129 NADP-dependent malic enzyme; Provisional Back     alignment and domain information
>PTZ00317 NADP-dependent malic enzyme; Provisional Back     alignment and domain information
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e Back     alignment and domain information
>COG0281 SfcA Malic enzyme [Energy production and conversion] Back     alignment and domain information
>PRK12861 malic enzyme; Reviewed Back     alignment and domain information
>PRK12862 malic enzyme; Reviewed Back     alignment and domain information
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed Back     alignment and domain information
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e Back     alignment and domain information
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme Back     alignment and domain information
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 Back     alignment and domain information
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 Back     alignment and domain information
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins Back     alignment and domain information
>PRK14031 glutamate dehydrogenase; Provisional Back     alignment and domain information
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional Back     alignment and domain information
>PRK09414 glutamate dehydrogenase; Provisional Back     alignment and domain information
>PRK14982 acyl-ACP reductase; Provisional Back     alignment and domain information
>PLN02477 glutamate dehydrogenase Back     alignment and domain information
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional Back     alignment and domain information
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase Back     alignment and domain information
>PRK14030 glutamate dehydrogenase; Provisional Back     alignment and domain information
>PRK12549 shikimate 5-dehydrogenase; Reviewed Back     alignment and domain information
>PRK12749 quinate/shikimate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR00936 ahcY adenosylhomocysteinase Back     alignment and domain information
>PRK12548 shikimate 5-dehydrogenase; Provisional Back     alignment and domain information
>PRK08328 hypothetical protein; Provisional Back     alignment and domain information
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase Back     alignment and domain information
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type Back     alignment and domain information
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases Back     alignment and domain information
>PRK14027 quinate/shikimate dehydrogenase; Provisional Back     alignment and domain information
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) Back     alignment and domain information
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase Back     alignment and domain information
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit Back     alignment and domain information
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed Back     alignment and domain information
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase Back     alignment and domain information
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP Back     alignment and domain information
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 Back     alignment and domain information
>PTZ00075 Adenosylhomocysteinase; Provisional Back     alignment and domain information
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional Back     alignment and domain information
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit Back     alignment and domain information
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 Back     alignment and domain information
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed Back     alignment and domain information
>PRK08306 dipicolinate synthase subunit A; Reviewed Back     alignment and domain information
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase Back     alignment and domain information
>TIGR01035 hemA glutamyl-tRNA reductase Back     alignment and domain information
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 Back     alignment and domain information
>PRK12550 shikimate 5-dehydrogenase; Reviewed Back     alignment and domain information
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase Back     alignment and domain information
>PRK08644 thiamine biosynthesis protein ThiF; Provisional Back     alignment and domain information
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E Back     alignment and domain information
>PRK13940 glutamyl-tRNA reductase; Provisional Back     alignment and domain information
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] Back     alignment and domain information
>PRK00676 hemA glutamyl-tRNA reductase; Validated Back     alignment and domain information
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA Back     alignment and domain information
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Back     alignment and domain information
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] Back     alignment and domain information
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB Back     alignment and domain information
>TIGR00507 aroE shikimate 5-dehydrogenase Back     alignment and domain information
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed Back     alignment and domain information
>PRK05600 thiamine biosynthesis protein ThiF; Validated Back     alignment and domain information
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like Back     alignment and domain information
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PRK08223 hypothetical protein; Validated Back     alignment and domain information
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional Back     alignment and domain information
>PLN00203 glutamyl-tRNA reductase Back     alignment and domain information
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
2aw5_A 575 Crystal Structure Of A Human Malic Enzyme Length = 1e-116
1gq2_A 555 Malic Enzyme From Pigeon Liver Length = 555 1e-110
1gz3_A 554 Molecular Mechanism For The Regulation Of Human Mit 1e-104
1qr6_A 584 Human Mitochondrial Nad(P)-Dependent Malic Enzyme L 2e-99
1do8_A 564 Crystal Structure Of A Closed Form Of Human Mitocho 2e-99
1efk_A 584 Structure Of Human Malic Enzyme In Complex With Ket 2e-99
1gz4_A 551 Molecular Mechanism Of The Regulation Of Human Mito 3e-99
1llq_A 605 Crystal Structure Of Malic Enzyme From Ascaris Suum 4e-99
1ww8_A 439 Crystal Structure Of Malic Enzyme From Pyrococcus H 8e-17
2dvm_A 439 Nad Complex Structure Of Ph1275 Protein From Pyroco 9e-17
3nv9_A 487 Crystal Structure Of Entamoeba Histolytica Malic En 4e-14
2a9f_A 398 Crystal Structure Of A Putative Malic Enzyme ((S)- 2e-08
1vl6_A 388 Crystal Structure Of Nad-Dependent Malic Enzyme (Tm 3e-07
2hae_A 386 Crystal Structure Of A Putative Malic Enzyme (Malat 3e-07
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme Length = 575 Back     alignment and structure 
Iteration: 1

 Score =  414 bits (1063), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/383 (53%), Positives = 263/383 (68%), Gaps = 16/383 (4%)
Query: 73  SGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGL 132
           SGV  G +++Y +              S+  GY L R+PH NK LAF+ +ER    + GL
Sbjct: 9   SGVDLGTENLYFQ--------------SMQRGYLLTRNPHLNKDLAFTLEERQQLNIHGL 54
Query: 133 LPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYT 192
           LPP+  SQE+QV +++ N         +Y+ +MDLQ+RN+KLFY++L  ++E+ +PIVYT
Sbjct: 55  LPPSFNSQEIQVLRVVKNFEHLNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYT 114
Query: 193 PTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLG 252
           PTVG ACQ+Y  ++ +P+G+FI++ D+G +  VL  WPE  I+ IVVTDGERILGLGDLG
Sbjct: 115 PTVGLACQQYSLVFRKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLG 174
Query: 253 CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAE 312
           C+GMGIPVGKL+LYTA GG+ P  CLPV +DVGT NE+LL D  YIGLRQ+R  G EY +
Sbjct: 175 CNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDD 234
Query: 313 LLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLIS 372
            L EFM AV   YG   LIQFEDFAN NAF LL KY   +  FNDDIQGTASV +AGL++
Sbjct: 235 FLDEFMEAVSSKYGMNCLIQFEDFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLA 294
Query: 373 AMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVS 432
           A++     L+DQ  LF GAGEA  GIA LI + + K+  +P E+  KKIWLVDSKGLIV 
Sbjct: 295 ALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKE-GLPKEKAIKKIWLVDSKGLIVK 353
Query: 433 SRLESLQHFKKPWAHEHEPVKEL 455
            R  SL   K+ +AHEHE +K L
Sbjct: 354 GR-ASLTQEKEKFAHEHEEMKNL 375
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver Length = 555 Back     alignment and structure
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 554 Back     alignment and structure
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme Length = 584 Back     alignment and structure
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme Length = 564 Back     alignment and structure
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With Ketomalonate Length = 584 Back     alignment and structure
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 551 Back     alignment and structure
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum Complexed With Nicotinamide Adenine Dinucleotide Length = 605 Back     alignment and structure
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus Horikoshii Ot3 Length = 439 Back     alignment and structure
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus Horikoshii Length = 439 Back     alignment and structure
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme Length = 487 Back     alignment and structure
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)- Malate:nad+ Oxidoreductase (Decarboxylating)) Length = 398 Back     alignment and structure
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542) From Thermotoga Maritima At 2.61 A Resolution Length = 388 Back     alignment and structure
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate Oxidoreductase) Length = 386 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
1gq2_A 555 Malic enzyme; oxidoreductase, pigeon liver, NADP-d 0.0
1pj3_A 564 NAD-dependent malic enzyme, mitochondrial; oxidati 0.0
1o0s_A 605 NAD-ME, NAD-dependent malic enzyme; oxidoreductase 0.0
3nv9_A 487 Malic enzyme; rossmann fold, oxidoreductase; 2.25A 2e-21
2a9f_A 398 Putative malic enzyme ((S)-malate:NAD+ oxidoreduct 2e-19
1vl6_A 388 Malate oxidoreductase; TM0542, NAD-dependent malic 1e-16
2dvm_A 439 Malic enzyme, 439AA long hypothetical malate oxido 7e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555 Back     alignment and structure
 Score =  577 bits (1490), Expect = 0.0
 Identities = 200/357 (56%), Positives = 252/357 (70%), Gaps = 2/357 (0%)

Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
           GY +LRDPH NKG+AF+ +ER    + GLLPP  + Q+ QV  +L N  +    L +Y+ 
Sbjct: 3   GYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYIL 62

Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
           +M LQ+RN+KLFYK+L  ++E  +PIVYTPTVG ACQ YG  + RP+G+FI++ D+G + 
Sbjct: 63  LMSLQDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIA 122

Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
            +L++WPE  I+ IVVTDGERILGLGDLGC+GMGIPVGKL+LYTA GG++P  CLPV +D
Sbjct: 123 TMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLD 182

Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD 343
           VGT+NE LL D  YIGLR KR  GQ Y +LL EFM AV   YG   LIQFEDFAN NAF 
Sbjct: 183 VGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFR 242

Query: 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403
           LL KY   +  FNDDIQGTASV +AGL++A++     L+D   LF GAGEA  GIA LI 
Sbjct: 243 LLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIV 302

Query: 404 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460
           + + K+  +  EE  K+IW+VDSKGLIV  R  SL   K+ +AHEH  +K L D V 
Sbjct: 303 MAMQKE-GVSKEEAIKRIWMVDSKGLIVKGR-ASLTPEKEHFAHEHCEMKNLEDIVK 357
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564 Back     alignment and structure
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605 Back     alignment and structure
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} Length = 487 Back     alignment and structure
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} Length = 398 Back     alignment and structure
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* Length = 388 Back     alignment and structure
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* Length = 439 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
1gq2_A 555 Malic enzyme; oxidoreductase, pigeon liver, NADP-d 100.0
1pj3_A 564 NAD-dependent malic enzyme, mitochondrial; oxidati 100.0
1o0s_A 605 NAD-ME, NAD-dependent malic enzyme; oxidoreductase 100.0
3nv9_A 487 Malic enzyme; rossmann fold, oxidoreductase; 2.25A 100.0
2a9f_A 398 Putative malic enzyme ((S)-malate:NAD+ oxidoreduct 100.0
1vl6_A 388 Malate oxidoreductase; TM0542, NAD-dependent malic 100.0
2dvm_A 439 Malic enzyme, 439AA long hypothetical malate oxido 100.0
3gvp_A 435 Adenosylhomocysteinase 3; protein CO-factor comple 97.55
3h9u_A 436 Adenosylhomocysteinase; NAD CO-factor complex, str 97.23
1x13_A 401 NAD(P) transhydrogenase subunit alpha; NAD(H)-bind 96.59
3ond_A 488 Adenosylhomocysteinase; plant protein, enzyme-subs 96.04
3k92_A 424 NAD-GDH, NAD-specific glutamate dehydrogenase; ROC 94.97
3aoe_E 419 Glutamate dehydrogenase; rossmann fold, NADH, oxid 93.94
4fcc_A 450 Glutamate dehydrogenase; protein complex, rossmann 93.73
2yfq_A 421 Padgh, NAD-GDH, NAD-specific glutamate dehydrogena 93.7
3r3j_A 456 Glutamate dehydrogenase; rossman fold, oxidoreduct 93.63
3aog_A 440 Glutamate dehydrogenase; NAD(H), oxidoreducta; HET 93.42
3jyo_A283 Quinate/shikimate dehydrogenase; enzyme-cofactor c 93.24
3fbt_A282 Chorismate mutase and shikimate 5-dehydrogenase fu 93.2
3o8q_A281 Shikimate 5-dehydrogenase I alpha; structural geno 93.07
3tnl_A315 Shikimate dehydrogenase; structural genomics, cent 93.06
3t4e_A312 Quinate/shikimate dehydrogenase; structural genomi 92.97
3don_A277 Shikimate dehydrogenase; alpha-beta structure, ros 92.85
3pwz_A272 Shikimate dehydrogenase 3; alpha-beta, oxidoreduct 92.69
2egg_A297 AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff 92.57
3tum_A269 Shikimate dehydrogenase family protein; rossmann-f 92.09
1v9l_A 421 Glutamate dehydrogenase; protein-NAD complex, oxid 92.09
2tmg_A 415 Protein (glutamate dehydrogenase); metabolic role, 91.73
1p77_A272 Shikimate 5-dehydrogenase; NADPH, oxidoreductase; 91.71
3n58_A 464 Adenosylhomocysteinase; ssgcid, hydrolase, structu 91.7
3d4o_A293 Dipicolinate synthase subunit A; NP_243269.1, stru 91.49
1nyt_A271 Shikimate 5-dehydrogenase; alpha/beta domains, WID 91.4
2hk9_A275 Shikimate dehydrogenase; shikimate pathway, drug d 91.15
2d5c_A263 AROE, shikimate 5-dehydrogenase; substrate, dimer, 91.1
3kkj_A 336 Amine oxidase, flavin-containing; oxidoreductase, 90.41
1gtm_A 419 Glutamate dehydrogenase; oxidoreductase, NAD, NADP 90.29
1lu9_A 287 Methylene tetrahydromethanopterin dehydrogenase; a 90.07
1bgv_A 449 Glutamate dehydrogenase; oxidoreductase; HET: GLU; 90.01
2bma_A 470 Glutamate dehydrogenase (NADP+); malaria, drug des 89.99
1nvt_A287 Shikimate 5'-dehydrogenase; structural genomics, P 88.72
1hyu_A 521 AHPF, alkyl hydroperoxide reductase subunit F; thi 87.47
3u62_A253 Shikimate dehydrogenase; shikimate pathway, oxidor 87.14
1npy_A271 Hypothetical shikimate 5-dehydrogenase-like protei 86.38
3h8v_A 292 Ubiquitin-like modifier-activating enzyme 5; rossm 86.26
3rui_A 340 Ubiquitin-like modifier-activating enzyme ATG7; au 85.33
1jw9_B 249 Molybdopterin biosynthesis MOEB protein; MOEB: mod 83.31
1zud_1 251 Adenylyltransferase THIF; thiamin, thiazole, prote 82.76
1c1d_A 355 L-phenylalanine dehydrogenase; amino acid dehydrog 82.3
3vrd_B 401 FCCB subunit, flavocytochrome C flavin subunit; su 81.85
3h5n_A 353 MCCB protein; ubiquitin-activating enzyme, microci 81.29
1l7d_A 384 Nicotinamide nucleotide transhydrogenase, subunit 80.85
2o4c_A 380 Erythronate-4-phosphate dehydrogenase; erythronate 80.58
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Back     alignment and structure
Probab=100.00  E-value=2.2e-141  Score=1115.59  Aligned_cols=357  Identities=56%  Similarity=0.968  Sum_probs=352.4

Q ss_pred             ccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhhhHHHHhhh
Q 012532          102 ASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLID  181 (461)
Q Consensus       102 ~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFY~ll~~  181 (461)
                      ++|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|++.||++++++|+||+||++||++||+|||||+++
T Consensus         1 ~~G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~Ne~Lfy~ll~~   80 (555)
T 1gq2_A            1 KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDRNEKLFYKVLTS   80 (555)
T ss_dssp             CCTTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             CChhhhccCCcccCCCCCCHHHHHHCCCccCCCCCcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCcceeeehhhHhh
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCceeeccCCCCCCccccchh
Q 012532          182 NVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVG  261 (461)
Q Consensus       182 ~~ee~lPIvYTPtVG~aC~~~s~i~r~p~GlYis~~d~g~i~~il~Nwp~~~v~viVVTDGerILGLGDlG~~GmgI~iG  261 (461)
                      |++|+|||+||||||++|++||+|||+|+|+|+|++|+|+++++++|||.++|+|||||||||||||||+|++||+||||
T Consensus        81 ~~~e~lpivYTP~V~~ac~~~s~i~~~p~g~yis~~d~~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvG  160 (555)
T 1gq2_A           81 DIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVG  160 (555)
T ss_dssp             THHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHH
T ss_pred             hHHHhcCcccCchHHHHHHHHHHHhcChhhhhcccCCHHHHHHHHhcCCCCCcEEEEEEccccccccCCCCCCccccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCccH
Q 012532          262 KLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNA  341 (461)
Q Consensus       262 Kl~LYta~gGI~P~~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~nA  341 (461)
                      |++|||+||||||++|||||||+|||||+||+||+||||||+|++|++||+|+||||++|+++|||+++||||||+++||
T Consensus       161 Kl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~~Rv~g~eyd~fvdefv~av~~~fGp~~~I~~EDf~~~~a  240 (555)
T 1gq2_A          161 KLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANA  240 (555)
T ss_dssp             HHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHH
T ss_pred             HHHHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCCCCCchHHHHHHHHHHHHHHHHhhCCCcEEeecccCCccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCceeccCcchHHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhCCCChhhhcCcE
Q 012532          342 FDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKI  421 (461)
Q Consensus       342 f~lL~rYr~~~~~FNDDIQGTaaV~LAgllaAlrv~g~~L~d~rivf~GAGsAgiGIA~li~~~m~~~~Gls~eeAr~~i  421 (461)
                      |+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|+|||+++|
T Consensus       241 f~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAg~gia~ll~~~~~~~-G~~~eeA~~~i  319 (555)
T 1gq2_A          241 FRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKE-GVSKEEAIKRI  319 (555)
T ss_dssp             HHHHHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHH-TCCHHHHHTTE
T ss_pred             HHHHHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHc-CCChHHHhCcE
Confidence            99999999999999999999999999999999999999999999999999999999999999999985 99999999999


Q ss_pred             EEEcCCCccccCCCcCCchhchhcccccCCCCCHHHHhc
Q 012532          422 WLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN  460 (461)
Q Consensus       422 ~lvDs~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~  460 (461)
                      ||||++|||+++|. +|+++|++||+++++.++|+|||+
T Consensus       320 ~~~D~~Gli~~~r~-~l~~~k~~~A~~~~~~~~L~eav~  357 (555)
T 1gq2_A          320 WMVDSKGLIVKGRA-SLTPEKEHFAHEHCEMKNLEDIVK  357 (555)
T ss_dssp             EEEETTEECBTTCS-SCCTTGGGGCBSCCCCCCHHHHHH
T ss_pred             EEEECCCeeeCCCC-CchHHHHHHHhhcCCCCCHHHHHh
Confidence            99999999999996 599999999998877889999997
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Back     alignment and structure
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Back     alignment and structure
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} Back     alignment and structure
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} Back     alignment and structure
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* Back     alignment and structure
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* Back     alignment and structure
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Back     alignment and structure
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Back     alignment and structure
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* Back     alignment and structure
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* Back     alignment and structure
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Back     alignment and structure
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Back     alignment and structure
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E Back     alignment and structure
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Back     alignment and structure
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} Back     alignment and structure
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Back     alignment and structure
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A Back     alignment and structure
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} Back     alignment and structure
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* Back     alignment and structure
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* Back     alignment and structure
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* Back     alignment and structure
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* Back     alignment and structure
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} Back     alignment and structure
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} Back     alignment and structure
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Back     alignment and structure
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Back     alignment and structure
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* Back     alignment and structure
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Back     alignment and structure
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Back     alignment and structure
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 Back     alignment and structure
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Back     alignment and structure
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Back     alignment and structure
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Back     alignment and structure
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A Back     alignment and structure
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Back     alignment and structure
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 Back     alignment and structure
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Back     alignment and structure
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} Back     alignment and structure
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 Back     alignment and structure
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Back     alignment and structure
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Back     alignment and structure
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Back     alignment and structure
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Back     alignment and structure
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Back     alignment and structure
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* Back     alignment and structure
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A Back     alignment and structure
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* Back     alignment and structure
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 461
d1o0sa2294 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent 1e-136
d1gq2a2257 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent 1e-136
d1pj3a2259 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent 1e-133
d1gq2a1 298 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent 1e-26
d1o0sa1 308 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent 1e-25
d1pj3a1 294 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent 1e-25
d1vl6a1 222 c.2.1.7 (A:155-376) Malate oxidoreductase (malic e 2e-20
d1vl6a2154 c.58.1.3 (A:1-154) Malate oxidoreductase (malic en 4e-05
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 294 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score =  393 bits (1010), Expect = e-136
 Identities = 143/289 (49%), Positives = 196/289 (67%), Gaps = 10/289 (3%)

Query: 80  QDVYGEDTATEDQPVTP--------WSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRG 131
           +DVY  +    D+                      LL++P  NKG+ FS  ER    L G
Sbjct: 6   EDVYSHNLPPMDEKEMALYKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHG 65

Query: 132 LLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVY 191
           LLPP  ++QE Q  +++  +R+    L +Y+ +  LQ+RN+KLFY+++ D+V+EL+PIVY
Sbjct: 66  LLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVY 125

Query: 192 TPTVGEACQKYGSIYSRPQGVFISLKDK--GKVLEVLRNWPEKNIQVIVVTDGERILGLG 249
           TPTVG ACQ +G IY +P+G++I++ D    K+ ++L NW E++++ IVVTDGERILGLG
Sbjct: 126 TPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLG 185

Query: 250 DLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQE 309
           DLG +G+GIPVGKL+LY ALGG++P  CLPV +DVGTNN  LL+D FYIGLR KR  G++
Sbjct: 186 DLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKD 245

Query: 310 YAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDD 358
           Y  LL  FM A  + YG++ LIQFEDFAN NAF LL+KY   + +FNDD
Sbjct: 246 YDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDD 294
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 257 Back     information, alignment and structure
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 259 Back     information, alignment and structure
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298 Back     information, alignment and structure
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308 Back     information, alignment and structure
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294 Back     information, alignment and structure
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 222 Back     information, alignment and structure
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 154 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
d1gq2a2257 Mitochondrial NAD(P)-dependent malic enzyme {Domes 100.0
d1pj3a2259 Mitochondrial NAD(P)-dependent malic enzyme {Human 100.0
d1o0sa2294 Mitochondrial NAD(P)-dependent malic enzyme {Pig r 100.0
d1vl6a2154 Malate oxidoreductase (malic enzyme) {Thermotoga m 99.97
d1gq2a1 298 Mitochondrial NAD(P)-dependent malic enzyme {Domes 99.95
d1o0sa1 308 Mitochondrial NAD(P)-dependent malic enzyme {Pig r 99.95
d1pj3a1 294 Mitochondrial NAD(P)-dependent malic enzyme {Human 99.95
d1vl6a1 222 Malate oxidoreductase (malic enzyme) {Thermotoga m 99.91
d1vi2a1182 Putative shikimate dehydrogenase YdiB {Escherichia 95.79
d1gpja2159 Glutamyl tRNA-reductase middle domain {Archaeon Me 95.76
d1nyta1170 Shikimate 5-dehydrogenase AroE {Escherichia coli [ 94.86
d1luaa1 191 Methylene-tetrahydromethanopterin dehydrogenase {M 93.93
d2jfga193 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 93.3
d1npya1167 Shikimate 5-dehydrogenase-like protein HI0607 {Hae 93.29
d1p77a1171 Shikimate 5-dehydrogenase AroE {Haemophilus influe 93.06
d1nvta1177 Shikimate 5-dehydrogenase AroE {Archaeon Methanoco 92.63
d1b5qa1 347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 91.24
d1c0pa1 268 D-aminoacid oxidase, N-terminal domain {Rhodotorul 90.35
d1seza1 373 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 89.98
d2voua1 265 Dihydroxypyridine hydroxylase DhpH {Arthrobacter n 89.62
d1c1da1 201 Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ 89.2
d1fcda1 186 Flavocytochrome c sulfide dehydrogenase, FCSD, fla 88.93
d2iida1 370 L-aminoacid oxidase {Malayan pit viper (Calloselas 88.63
d1jw9b_ 247 Molybdenum cofactor biosynthesis protein MoeB {Esc 88.44
d1gtea4 196 Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su 87.94
d2dw4a2 449 Lysine-specific histone demethylase 1, LSD1 {Human 86.37
d1f0ya2 192 Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum 86.33
d2bi7a1 314 UDP-galactopyranose mutase, N-terminal domain {Kle 86.01
d1vj0a2182 Hypothetical protein TM0436 {Thermotoga maritima [ 85.32
d1djqa3 233 Trimethylamine dehydrogenase, middle domain {Methy 84.95
d1bgva1 255 Glutamate dehydrogenase {Clostridium symbiosum [Ta 84.9
d1e5qa1 182 Saccharopine reductase {Rice blast fungus (Magnapo 84.66
d1d5ta1 336 Guanine nucleotide dissociation inhibitor, GDI {Co 84.37
d1w4xa1 298 Phenylacetone monooxygenase {Thermobifida fusca [T 84.23
d1v9la1 242 Glutamate dehydrogenase {Pyrobaculum islandicum [T 84.18
d2ivda1 347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 83.62
d1b26a1 234 Glutamate dehydrogenase {Thermotoga maritima [TaxI 83.53
d1lqta2 239 Ferredoxin:NADP reductase FprA {Mycobacterium tube 83.26
d2bcgg1 297 Guanine nucleotide dissociation inhibitor, GDI {Ba 83.23
d1pj5a2 305 N,N-dimethylglycine oxidase {Arthrobacter globifor 83.02
d1wdka3 186 Fatty oxidation complex alpha subunit, middle doma 82.9
d1pn0a1 360 Phenol hydroxylase {Soil-living yeast (Trichosporo 82.44
d1pl8a2171 Ketose reductase (sorbitol dehydrogenase) {Human ( 81.84
d3c96a1 288 Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 81.73
d1gtma1 239 Glutamate dehydrogenase {Archaeon Pyrococcus furio 81.38
d1k0ia1 292 p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a 80.76
d1cjca2 230 Adrenodoxin reductase of mitochondrial p450 system 80.03
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=100.00  E-value=2.8e-119  Score=870.97  Aligned_cols=257  Identities=58%  Similarity=1.047  Sum_probs=255.6

Q ss_pred             ccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhhhHHHHhhh
Q 012532          102 ASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLID  181 (461)
Q Consensus       102 ~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFY~ll~~  181 (461)
                      ++|+++|+||.+|||||||.+||++|||+|||||+|+|+|+|++||+.+|+++++||+||+||++||++||+|||++|++
T Consensus         1 krG~~lL~~p~~NKGtAFt~~ER~~l~l~GLLP~~v~tle~Qv~r~~~~~~~~~~~l~Ky~yL~~L~~~Ne~LFY~ll~~   80 (257)
T d1gq2a2           1 KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDRNEKLFYKVLTS   80 (257)
T ss_dssp             CCTTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             CChHHHhcCCCccCccCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhChHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCceeeccCCCCCCccccchh
Q 012532          182 NVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVG  261 (461)
Q Consensus       182 ~~ee~lPIvYTPtVG~aC~~~s~i~r~p~GlYis~~d~g~i~~il~Nwp~~~v~viVVTDGerILGLGDlG~~GmgI~iG  261 (461)
                      |++||||||||||||+||++||++||+|+|||||++|+|+|.++|+|||.++|++||||||||||||||||++|||||+|
T Consensus        81 ~~~e~~PivYTPTVG~Ac~~ys~~yr~prGlyis~~d~g~i~~il~nwp~~~V~~iVVTDG~rILGlGD~G~~Gm~I~~g  160 (257)
T d1gq2a2          81 DIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVG  160 (257)
T ss_dssp             THHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHH
T ss_pred             HHHHhcCcccCccHHHHHHHHhhhhccccceeeccCChHHHHHHHHhCCCCCeeEEEEecCceeeecCCcCcCccchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCeeeEEeeCCCccH
Q 012532          262 KLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNA  341 (461)
Q Consensus       262 Kl~LYta~gGI~P~~~LPV~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fvdEfv~av~~~fGp~~lIqfEDF~~~nA  341 (461)
                      |++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++|++||||||+||+++|||+++||||||+++||
T Consensus       161 Kl~lyta~~Gi~P~~~LPv~LDvGTnNe~LL~DP~YlG~R~~R~~g~eY~~fvdefv~av~~~~p~~~~i~~EDf~~~na  240 (257)
T d1gq2a2         161 KLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANA  240 (257)
T ss_dssp             HHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHH
T ss_pred             HHHHHHHhcCCCHhhcCCeeecCCCChHHHhcCcccccccCCCCcchHHHHHHHHHHHHHHHhCCCCCEEehhhcCCchH
Confidence            99999999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             HHHHHHHcCCCceeccC
Q 012532          342 FDLLEKYGTTHLVFNDD  358 (461)
Q Consensus       342 f~lL~rYr~~~~~FNDD  358 (461)
                      |++|+|||+++||||||
T Consensus       241 ~~~L~~yr~~~~~FNDD  257 (257)
T d1gq2a2         241 FRLLHKYRNKYCTFNDD  257 (257)
T ss_dssp             HHHHHHHTTTSEEEETT
T ss_pred             HHHHHHHccCCCccCCC
Confidence            99999999999999999
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Back     information, alignment and structure
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Back     information, alignment and structure
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Back     information, alignment and structure
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Back     information, alignment and structure
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Back     information, alignment and structure
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Back     information, alignment and structure
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Back     information, alignment and structure
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Back     information, alignment and structure
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Back     information, alignment and structure
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Back     information, alignment and structure
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Back     information, alignment and structure
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure