Citrus Sinensis ID: 012533

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
MNNSKSRKVGKINKKDRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEILYGDDDPLEPVKYLLKNCGVLDKMIFRYVGESSNELCKELLMFPRGSKTCEVELRGKYGD
ccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEEEcccccccccccccccEEEEcccccccccEEEEEcccccEEEEEEccccccccccEEEEEcccEEEEEEEccccccEEEEccccEEEEEEEEEcccccccccccHHHHHHHcccccccEEcEEccEEEEEHHHHHHHcccccccccccccEEEEEEEEEcccccHHHHHHHccccccEEEEEEEcccccccccccccccccccccccccEEEEEEEEccccHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHccccccccEEEEEEEEccc
cccccccccccccccccHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEEEcccccccccccEEccccEEEcccEEEEEEEcEEEccccccccccHHHHEEEEEEEEccHHHHccccHHHHEEEEEcccccccEEEEEEccccEEEEEEEccccccccccEEEEEcccEEEEEEEccccccEEEEcccccEEEEEEEEEcccccccccHcHHHHHHHHHHcccEEEEccHHHHHHHHHHHcccccccccccccccEEEEEEEcccccHHHHHHHHHccccccEEEEEEccccccccccccccccccccHHHHHHHEEEEEEcccHHHHHHHHHHHHHcHHHcEEEEEcccccHHHHHHHHHHccccccccEEEEEccccc
mnnsksrkvgkinkkdriscmpdsiLCHILSFLSTEDAVRTSILSSRWKLVWAslpnlmfndklcyrrdgtsdngalTRFENFVDRMLLSNSVSISKFslhcqkkprylSRLKFWVALAIMRNVHEIevnlpvddpfeegyepvelpdciynsetLEILKLETdfvfkspssgicfprvkkfhveiykpnmpdfsicpvledlsidyslnfdwdadisisSQTLKRLNLMIggpivfanehqatieapklehlhvndGTLVSYLVYELHSLCDarldidysrvrsdpvrADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQyflptfsnlsFLEVRIREYGWWIlpiifncspnlESFVLIMdvngpeyyveagwiepqfvpyclqfNVKKIEilygdddplePVKYLLKNCGVLDKMIFRYVGESSNELCKELlmfprgsktcEVELRGKYGD
mnnsksrkvgkinkkdriscmpDSILCHILSFLSTEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSISkfslhcqkkpryLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVfkspssgicfpRVKKFHVEIYKPNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEILYGDDDPLEPVKYLLKNCGVLDKMIFRYVGESSNELCKELlmfprgsktcevelrgkygd
MNNSKSRKVGKINKKDRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEILYGDDDPLEPVKYLLKNCGVLDKMIFRYVGESSNELCKELLMFPRGSKTCEVELRGKYGD
****************RISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEILYGDDDPLEPVKYLLKNCGVLDKMIFRYVGESSNELCKELLMFPRGSKTC**********
*******************CMPDSILCHILSFLSTEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEILYGDDDPLEPVKYLLKNCGVLDKMIFRYVGESSNELCKELLMFPRGSKTCEVELRGKY**
************NKKDRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEILYGDDDPLEPVKYLLKNCGVLDKMIFRYVGESSNELCKELLMFPRGSKTCEVELRGKYGD
***************DRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEILYGDDDPLEPVKYLLKNCGVLDKMIFRYVGESSNELCKELLMFPRGSKTCEVELRG****
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MNNSKSRKVGKINKKDRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEILYGDDDPLEPVKYLLKNCGVLDKMIFRYVGESSNELCKELLMFPRGSKTCEVELRGKYGD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query461 2.2.26 [Sep-21-2011]
Q9FNJ5450 F-box/FBD/LRR-repeat prot yes no 0.895 0.917 0.287 9e-33
Q9FZ52449 F-box/FBD/LRR-repeat prot no no 0.915 0.939 0.283 9e-33
Q9ZV93458 F-box/FBD/LRR-repeat prot no no 0.889 0.895 0.287 1e-30
Q9FLA2438 Putative F-box/FBD/LRR-re no no 0.885 0.931 0.278 1e-29
Q9FNJ1437 F-box/FBD/LRR-repeat prot no no 0.895 0.945 0.297 2e-29
Q9C8Y8453 Putative F-box/FBD/LRR-re no no 0.878 0.894 0.278 7e-29
Q9FWZ1451 F-box/LRR-repeat protein no no 0.898 0.917 0.295 1e-28
Q9FM89422 F-box/FBD/LRR-repeat prot no no 0.863 0.943 0.268 1e-27
Q9FNJ4443 Putative F-box/FBD/LRR-re no no 0.880 0.916 0.289 2e-27
Q9LX51520 F-box/LRR-repeat protein no no 0.900 0.798 0.276 3e-27
>sp|Q9FNJ5|FDL31_ARATH F-box/FBD/LRR-repeat protein At5g22660 OS=Arabidopsis thaliana GN=At5g22660 PE=2 SV=1 Back     alignment and function desciption
 Score =  141 bits (356), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 139/484 (28%), Positives = 226/484 (46%), Gaps = 71/484 (14%)

Query: 2   NNSKSRKVGKINKKDRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWASLPNLMFN 61
           N    R+ G+    DRIS +PD +L  ILS L TE+AV TSILS+RWK +W S P L   
Sbjct: 3   NQGAIRRSGE----DRISSLPDHLLSQILSNLPTENAVTTSILSTRWKDLWLSTPVLDI- 57

Query: 62  DKLCYRRDGTSDNGALTRFENFVDRMLLSNSVS-ISKFSLHCQKKPRYLSRLKFWVALAI 120
                           T F +F  R L S   S + K  +  Q +   +  +  W+  A+
Sbjct: 58  --------DIDAFDDATTFISFATRFLDSFKDSCLHKLQISFQMEAVDMWTIIPWIEDAV 109

Query: 121 MRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLET----DFVFKSPSSGICF 176
            R +  +EV+  +D   +       LP  +Y SE+L  L+L       FVF      +  
Sbjct: 110 KRRIQHLEVDSRIDHMID------TLPLTVYLSESLVSLRLHLVMLHRFVF------VSL 157

Query: 177 PRVKKFHVE----IYKPNMPDF-SICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMI 231
           P +K  H+E     Y   M  F S CPVLEDL++  +++   +  + +SSQ+L  L L+I
Sbjct: 158 PNLKVMHLEENIYSYAETMEKFISSCPVLEDLTVVRNVDEATEKVLRVSSQSLNSLKLVI 217

Query: 232 GGPIVFANEH----QATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDP 287
                + N+     +  I+AP+L +L + D   VS+++  L S   A+ DI  S   SD 
Sbjct: 218 DSSKCWYNDDSDDWKVVIDAPQLVYLSLKDDQSVSFVINNLCS--SAKADIKVSFNVSDI 275

Query: 288 VRADHALQ------LLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLE 341
              + + +       L  L++L+ + +S  T+  +    +H        +P F N++ L 
Sbjct: 276 WDLEESFERSNVGKFLTGLSSLRDMTISGTTLKIICHYLKH------EPMPQFRNMTRLH 329

Query: 342 VRIREYGWWILPIIFNCSPNLESFVLIM--DVNGPEYYVEAGWIEPQFVPYCLQFNVKKI 399
            +       +LP +    PNL+S VL +  ++   E  + +       VP CLQ +++ +
Sbjct: 330 AKFYVCDLEMLPCVLESCPNLKSLVLKLKGEMENEEISLSSS------VPKCLQSSLENV 383

Query: 400 EIL---YGDDDPLEPVKYLLKNCGVLDKMIFRYVGESSNE-----LCKELLMFPRGSKTC 451
           EI+   YG  + ++  KY L+N  VL K  F+   +  +E     + +EL+ F R S  C
Sbjct: 384 EIIRPNYGSGEEMKLSKYFLENSLVLKK--FKLCRDCHSEEQESLVVRELMTFQRCSSAC 441

Query: 452 EVEL 455
           E+ +
Sbjct: 442 EINV 445

Arabidopsis thaliana (taxid: 3702)
>sp|Q9FZ52|FDL3_ARATH F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana GN=At1g16930 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g78750 OS=Arabidopsis thaliana GN=At1g78750 PE=2 SV=1 Back     alignment and function description
>sp|Q9FLA2|FDL34_ARATH Putative F-box/FBD/LRR-repeat protein At5g44950 OS=Arabidopsis thaliana GN=At5g44950 PE=4 SV=1 Back     alignment and function description
>sp|Q9FNJ1|FDL47_ARATH F-box/FBD/LRR-repeat protein At5g22700 OS=Arabidopsis thaliana GN=At5g22700 PE=2 SV=2 Back     alignment and function description
>sp|Q9C8Y8|FDL7_ARATH Putative F-box/FBD/LRR-repeat protein At1g66290 OS=Arabidopsis thaliana GN=At1g66290 PE=4 SV=1 Back     alignment and function description
>sp|Q9FWZ1|FBL13_ARATH F-box/LRR-repeat protein 13 OS=Arabidopsis thaliana GN=FBL13 PE=2 SV=1 Back     alignment and function description
>sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana GN=At5g56420 PE=2 SV=1 Back     alignment and function description
>sp|Q9FNJ4|FDL32_ARATH Putative F-box/FBD/LRR-repeat protein At5g22670 OS=Arabidopsis thaliana GN=At5g22670 PE=4 SV=1 Back     alignment and function description
>sp|Q9LX51|FBL64_ARATH F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
147812093 607 hypothetical protein VITISV_040899 [Viti 0.906 0.688 0.329 7e-46
296086770411 unnamed protein product [Vitis vinifera] 0.819 0.919 0.325 3e-37
224114976462 predicted protein [Populus trichocarpa] 0.919 0.917 0.318 1e-32
145334537450 F-box/FBD/LRR-repeat protein [Arabidopsi 0.895 0.917 0.287 6e-31
15219959449 F-box/RNI-like/FBD-like domains-containi 0.915 0.939 0.283 6e-31
15219161458 F-box/FBD/LRR-repeat protein [Arabidopsi 0.889 0.895 0.287 8e-29
357474709467 F-box/LRR-repeat protein [Medicago trunc 0.869 0.858 0.297 1e-28
297825705440 F-box family protein [Arabidopsis lyrata 0.887 0.929 0.286 2e-28
297796525423 F-box family protein [Arabidopsis lyrata 0.865 0.943 0.281 2e-28
15241633438 putative F-box/FBD/LRR-repeat protein [A 0.885 0.931 0.278 8e-28
>gi|147812093|emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 154/467 (32%), Positives = 241/467 (51%), Gaps = 49/467 (10%)

Query: 15  KDRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSD- 73
           +D IS +PD +LCHILSFL T+ AV TSILS RW+ +WAS+P L F+D+L        + 
Sbjct: 9   RDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVEL 68

Query: 74  NGALTRFENFVDRMLLSNSVS-ISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLP 132
              +  F+NFVD +L  + VS I KF L    +   L  +  W+ +A+ R V E++++L 
Sbjct: 69  EERIIMFQNFVDGVLRHSEVSCIKKFRL--GYRDNNLDSVYSWICIALERRVQELDLHLL 126

Query: 133 VDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMP 192
           +D         VELP   +  +TL ++KL        P++ +  P +K  H++  + +  
Sbjct: 127 ID-------WRVELPPMFFICKTLVVVKLSCALFLDIPTT-VWLPSLKALHLKSVEYSDD 178

Query: 193 D-----FSICPVLEDLSIDY-SLNFDWDADISISSQTLKRLNLMIGGPIVFAN------- 239
           D      S CPVLE+L I+    +  W  ++S  S  + R+     G   FA+       
Sbjct: 179 DSIQKLLSGCPVLEELVIEREERDNQWVVNVSNPSLKILRIFFFTDG---FAHPYEQEDQ 235

Query: 240 EHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDI--DYSRVRSDPVRADHA---- 293
           +++  ++AP LE+L + D     Y V +L SL  A +D+  D       P     +    
Sbjct: 236 DYKVVVDAPNLEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGP 295

Query: 294 -LQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLE-VRIREYGWWI 351
             +LL +++N+K L L+  T+ +L            Y LPTF N++ LE + I  + W  
Sbjct: 296 IYELLGRISNVKCLSLTGVTLDSLSGT------IGDYKLPTFHNMTRLEFLFIGGFNWDF 349

Query: 352 LPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEI--LYGDDDPL 409
           LP   + SPNLE+  L+++       +  GW+ P  VP CL  ++K+IEI  + G+D  L
Sbjct: 350 LPNFLHSSPNLEA--LVIETGYTNELIPEGWLMPLQVPACLVLHLKEIEIRRIVGEDYEL 407

Query: 410 EPVKYLLKNCGVLDKMIFRYVGESSNE---LCKELLMFPRGSKTCEV 453
           E V+YLLKN  VL +M         ++   +CK+LL  PRGS++C V
Sbjct: 408 EAVEYLLKNAEVLQQMTIDCHESYMDQEFCVCKKLLGLPRGSRSCFV 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086770|emb|CBI32919.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114976|ref|XP_002316907.1| predicted protein [Populus trichocarpa] gi|222859972|gb|EEE97519.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|145334537|ref|NP_001078614.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|75262764|sp|Q9FNJ5.1|FDL31_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At5g22660 gi|10178240|dbj|BAB11672.1| unnamed protein product [Arabidopsis thaliana] gi|332005678|gb|AED93061.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15219959|ref|NP_173137.1| F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana] gi|75263252|sp|Q9FZ52.1|FDL3_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At1g16930 gi|9802769|gb|AAF99838.1|AC051629_5 Hypothetical protein [Arabidopsis thaliana] gi|332191402|gb|AEE29523.1| F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15219161|ref|NP_177996.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|75268062|sp|Q9ZV93.1|FDL10_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At1g78750 gi|3834319|gb|AAC83035.1| Similar to gi|2244754 heat shock transcription factor HSF30 homolog from Arabidopsis thaliana chromosome 4 contig gb|Z97335 [Arabidopsis thaliana] gi|332198025|gb|AEE36146.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357474709|ref|XP_003607639.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355508694|gb|AES89836.1| F-box/LRR-repeat protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297825705|ref|XP_002880735.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297326574|gb|EFH56994.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297796525|ref|XP_002866147.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297311982|gb|EFH42406.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15241633|ref|NP_199308.1| putative F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|75262649|sp|Q9FLA2.1|FDL34_ARATH RecName: Full=Putative F-box/FBD/LRR-repeat protein At5g44950 gi|10177487|dbj|BAB10878.1| unnamed protein product [Arabidopsis thaliana] gi|332007796|gb|AED95179.1| putative F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
TAIR|locus:2015681449 AT1G16930 "AT1G16930" [Arabido 0.917 0.942 0.296 5.7e-36
TAIR|locus:2037578458 AT1G78750 "AT1G78750" [Arabido 0.893 0.899 0.293 8.3e-35
TAIR|locus:2162489450 AT5G22660 "AT5G22660" [Arabido 0.889 0.911 0.303 4.6e-34
TAIR|locus:2162454437 AT5G22700 "AT5G22700" [Arabido 0.900 0.949 0.294 3.2e-33
TAIR|locus:2155327438 AT5G44950 "AT5G44950" [Arabido 0.895 0.942 0.281 4.1e-33
TAIR|locus:2026761451 AT1G69630 [Arabidopsis thalian 0.893 0.913 0.299 7.7e-32
TAIR|locus:2081297388 AT3G59190 "AT3G59190" [Arabido 0.735 0.873 0.307 1.4e-31
TAIR|locus:505006456468 AT4G14096 "AT4G14096" [Arabido 0.906 0.893 0.287 1.6e-31
TAIR|locus:2037558452 AT1G78760 "AT1G78760" [Arabido 0.917 0.935 0.268 6.9e-31
TAIR|locus:2075372472 AT3G03040 "AT3G03040" [Arabido 0.709 0.692 0.308 7.4e-31
TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 141/476 (29%), Positives = 225/476 (47%)

Query:     1 MNNSKSRKVGKINKKDRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWASLPNLMF 60
             M++  S K  + N  DRIS +PDS+LC ILS LST+++V TS+LS RW+ +W  +P L  
Sbjct:     1 MDDETSVKEKQRNS-DRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDL 59

Query:    61 NDKLCYRRDGTSDNGALTRFENFVDRMLLS-NSVSISKFSLHCQKKPRYLSRLKFWVALA 119
             +       +   D+     F +FV+R L S N   + +F L  +      SR K W+   
Sbjct:    60 DS------NNFPDDDV---FVSFVNRFLGSENEQHLERFKLIYEVNEHDASRFKSWINAV 110

Query:   120 IMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRV 179
             I R V    V+  VDD  ++  E V++P  +Y+ E L  L+L        P S +  P V
Sbjct:   111 IKRRVCHFNVHNEVDD--DD--ELVKMPLSLYSCERLVNLQLYR-VALDHPES-VSLPCV 164

Query:   180 KKFHVEIYKPNMPD-----FSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGP 234
             K  H+++ K +         S CPVLE+L+I    N   +  + + SQ+LK  +  I   
Sbjct:   165 KIMHLDMVKYDADSTLEILISGCPVLEELTIVRDPNDSLEV-VCVRSQSLK--SFKIDSE 221

Query:   235 IVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRADHA- 293
                +  H  TI+AP+LE++++ D    S++++ +       +D+ ++   +DP+  D + 
Sbjct:   222 RYESQNHVVTIDAPRLEYMNLCDHRSDSFIIHNIGPFAKVDIDVIFNVEYNDPLEPDDSS 281

Query:   294 -LQLLKK-LTNLKS---LYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRIREYG 348
              + +L K LT L +   + +S  T+  +     H Y   +  LP FSNLS L     +  
Sbjct:   282 KIAMLGKFLTGLSTVSEMVISSDTLQVI-----HDYCKMEQ-LPQFSNLSRLHAYFEDTW 335

Query:   349 WWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQ-------FV----PYCLQFNVK 397
             W +LP      PNL S V+  D       ++  ++ PQ       FV    PY +    K
Sbjct:   336 WEMLPTFLESFPNLHSLVMEFDCFPDTEQIDLSYV-PQCFLSSLEFVHLKTPYVVNMQ-K 393

Query:   398 KIEILYGDDDPLEPVKYLLKNCGVLDKMIFRYVGESSNELCKELLMFPRGSKTCEV 453
             +   L G     +  KY L+N   L K+    V  S   +  E+   PR S +C+V
Sbjct:   394 EGRPLTGTSSKRKLAKYFLENGAALKKLT---VSASFCNIIDEIKAIPRSSTSCQV 446
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162489 AT5G22660 "AT5G22660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162454 AT5G22700 "AT5G22700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155327 AT5G44950 "AT5G44950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026761 AT1G69630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081297 AT3G59190 "AT3G59190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006456 AT4G14096 "AT4G14096" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037558 AT1G78760 "AT1G78760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075372 AT3G03040 "AT3G03040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
smart0057972 smart00579, FBD, domain in FBox and BRCT domain co 3e-09
pfam0838751 pfam08387, FBD, FBD 7e-06
pfam0064648 pfam00646, F-box, F-box domain 3e-05
pfam1293747 pfam12937, F-box-like, F-box-like 0.003
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 0.003
>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins Back     alignment and domain information 
 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 391 CLQFNVKKIEIL--YGDDDPLEPVKYLLKNCGVLDKMIFRYVGESSNELC---KELLMFP 445
           CL  +++ +EI    G ++  E VKY L+N   L K+          E     KELL  P
Sbjct: 2   CLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLP 61

Query: 446 RGSKTCEVEL 455
           R S +C+V+ 
Sbjct: 62  RASSSCQVQF 71

Length = 72
>gnl|CDD|203925 pfam08387, FBD, FBD Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 461
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 99.53
KOG4341483 consensus F-box protein containing LRR [General fu 99.31
smart0057972 FBD domain in FBox and BRCT domain containing plan 99.23
PF0838751 FBD: FBD; InterPro: IPR013596 This region is found 99.1
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.71
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.27
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 98.19
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.1
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 98.02
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 98.0
PLN03210 1153 Resistant to P. syringae 6; Provisional 97.92
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 97.88
PLN03210 1153 Resistant to P. syringae 6; Provisional 97.85
KOG4341483 consensus F-box protein containing LRR [General fu 97.37
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 97.34
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 97.26
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 97.2
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 96.83
KOG3207 505 consensus Beta-tubulin folding cofactor E [Posttra 96.66
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 96.58
KOG1947482 consensus Leucine rich repeat proteins, some prote 96.57
KOG1947482 consensus Leucine rich repeat proteins, some prote 96.57
KOG1259490 consensus Nischarin, modulator of integrin alpha5 96.23
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 96.18
KOG2982418 consensus Uncharacterized conserved protein [Funct 96.16
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 96.11
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 95.91
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 95.6
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 95.4
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 95.21
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 95.11
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 95.09
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 95.07
KOG2982 418 consensus Uncharacterized conserved protein [Funct 94.84
PF0772326 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le 94.72
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 94.02
KOG2123 388 consensus Uncharacterized conserved protein [Funct 93.98
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 93.7
KOG2997366 consensus F-box protein FBX9 [General function pre 93.46
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 93.1
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 92.67
KOG0281499 consensus Beta-TrCP (transducin repeats containing 92.26
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 91.9
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 91.11
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 90.57
KOG1259490 consensus Nischarin, modulator of integrin alpha5 89.84
KOG0617264 consensus Ras suppressor protein (contains leucine 89.18
PLN03150623 hypothetical protein; Provisional 88.77
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 87.95
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 86.12
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 85.71
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 84.2
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 82.34
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 82.33
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 82.23
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 81.17
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 80.9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.53  E-value=3.9e-16  Score=139.80  Aligned_cols=169  Identities=16%  Similarity=0.176  Sum_probs=93.8

Q ss_pred             cCCCChHHHHHHHcCCChHhHhhhcccchhhHHHhccCCeeEeeccccccCCCCCCCcccchHHHHHHHHHhcCcCCcce
Q 012533           18 ISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSISK   97 (461)
Q Consensus        18 is~LPd~vL~~Ils~L~~rd~~rts~lSrrWr~lw~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~i~~   97 (461)
                      +..|||||+..||+.|+.+|+.+.+.|||||+++-..-. ++...+.       .+   ..--.+...+++ ++ | |..
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~-lW~~lDl-------~~---r~i~p~~l~~l~-~r-g-V~v  163 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES-LWQTLDL-------TG---RNIHPDVLGRLL-SR-G-VIV  163 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc-ceeeecc-------CC---CccChhHHHHHH-hC-C-eEE
Confidence            678999999999999999999999999999997543221 1111100       00   000122333333 22 2 334


Q ss_pred             EEEEeccCCCCcchHHHHHHHHHhCCceEEEEEccCCCCCCCCCccccCCCcccccCcccEEEeccc-ccccCCCCcccC
Q 012533           98 FSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETD-FVFKSPSSGICF  176 (461)
Q Consensus        98 l~l~~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~-~~~~~p~~~~~~  176 (461)
                      |++.  ....+...+..... ..+.+++++++.+.       ....-.+.-.+..|..|+.|+|.+. .+..+....+.-
T Consensus       164 ~Rla--r~~~~~prlae~~~-~frsRlq~lDLS~s-------~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN  233 (419)
T KOG2120|consen  164 FRLA--RSFMDQPRLAEHFS-PFRSRLQHLDLSNS-------VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN  233 (419)
T ss_pred             EEcc--hhhhcCchhhhhhh-hhhhhhHHhhcchh-------heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc
Confidence            4433  21122222222211 13346788887764       2223334444455777777777621 111001112456


Q ss_pred             cccceEEeceee-cCC--c--ccCCCCccceEEEEeecC
Q 012533          177 PRVKKFHVEIYK-PNM--P--DFSICPVLEDLSIDYSLN  210 (461)
Q Consensus       177 ~~L~~L~L~~~~-~~~--~--lls~cp~Le~L~L~~c~~  210 (461)
                      .+|+.|+|+.+. ..+  +  ++++|..|.+|+|..|..
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l  272 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL  272 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence            778888888887 332  2  788888888888888865

>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins Back     alignment and domain information
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 62.6 bits (151), Expect = 2e-10
 Identities = 71/449 (15%), Positives = 121/449 (26%), Gaps = 122/449 (27%)

Query: 10  GK-------INKKDRISCMPDSILCHILSF--LSTEDAVRTSI--LSSRWKLVWASLPNL 58
           GK                M   I    L+    ++ + V   +  L  +    W S  + 
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 59  MFNDKLCYRRDGTSDNGALTRF--ENFVDRMLL-----SNSVSISKFSLHCQKKPRYL-- 109
             N     +    S    L R       +  LL      N+ + + F+L C    + L  
Sbjct: 220 SSN----IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC----KILLT 271

Query: 110 SRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEIL--KLETDFVF 167
           +R K      +   +          D       P          E   +L   L+     
Sbjct: 272 TRFK-----QVTDFLSAATTTHISLDHHSMTLTP---------DEVKSLLLKYLDCR-PQ 316

Query: 168 KSPSSGICFPRVKKFHVEIYKPNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRL 227
             P   +         + I   ++ D          + D   + + D   +I   +L  L
Sbjct: 317 DLPRE-VL--TTNPRRLSIIAESIRDGLA-------TWDNWKHVNCDKLTTIIESSLNVL 366

Query: 228 NLMIGGPIVFANEHQATIEA----PKLEHLHVNDGTLVSY-----------LVYELHSLC 272
                       E++   +     P     H+    L              +V +LH   
Sbjct: 367 E---------PAEYRKMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 273 DARLDIDYSRVRSDPVRADHALQL--LKKLTNLKSLYLSCGTIYALGEAY---------- 320
                   S +         ++ L    KL N  +L+ S    Y + + +          
Sbjct: 416 LVEKQPKESTIS------IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 321 ---------RHLYDAHQY-----FLPTFSNLSFLEVRIREYG--WWILPIIFNCSPNLES 364
                     HL +         F   F +  FLE +IR     W     I N    L+ 
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 365 FVLIMDVNGPEY--YVEAGWIEPQFVPYC 391
           +   +  N P+Y   V A  I   F+P  
Sbjct: 530 YKPYICDNDPKYERLVNA--IL-DFLPKI 555
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 99.78
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 99.75
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.7
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 98.96
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 98.83
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 98.74
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.7
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 98.68
4fmz_A347 Internalin; leucine rich repeat, structural genomi 98.62
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 98.61
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 98.59
4fmz_A347 Internalin; leucine rich repeat, structural genomi 98.58
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 98.58
1o6v_A466 Internalin A; bacterial infection, extracellular r 98.55
1o6v_A 466 Internalin A; bacterial infection, extracellular r 98.55
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 98.54
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 98.54
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 98.52
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 98.48
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 98.46
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 98.45
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 98.45
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 98.45
2id5_A 477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 98.44
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 98.44
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 98.42
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 98.39
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 98.37
2z81_A 549 CD282 antigen, TOLL-like receptor 2, variable lymp 98.36
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 98.35
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 98.34
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 98.33
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 98.32
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 98.3
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 98.3
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 98.3
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 98.28
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 98.27
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 98.27
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 98.27
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 98.27
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 98.26
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 98.26
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 98.26
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 98.25
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 98.25
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 98.22
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 98.22
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 98.21
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 98.2
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 98.2
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 98.2
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 98.19
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 98.18
3bz5_A 457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 98.17
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 98.17
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 98.15
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 98.15
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 98.14
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 98.12
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 98.11
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 98.11
2z7x_B 520 TOLL-like receptor 1, variable lymphocyte recepto; 98.1
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 98.1
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 98.1
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 98.09
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 98.08
2z81_A 549 CD282 antigen, TOLL-like receptor 2, variable lymp 98.08
3bz5_A 457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 98.07
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 98.06
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 98.04
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 98.04
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 98.02
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 98.0
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 97.96
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 97.95
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 97.94
3a79_B 562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 97.93
4ezg_A197 Putative uncharacterized protein; internalin-A, le 97.93
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 97.88
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 97.87
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 97.87
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 97.86
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 97.86
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 97.86
3a79_B 562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 97.85
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 97.82
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.8
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 97.79
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 97.79
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 97.76
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 97.71
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 97.7
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 97.67
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 97.67
4ezg_A197 Putative uncharacterized protein; internalin-A, le 97.66
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 97.64
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 97.59
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 97.56
3m19_A251 Variable lymphocyte receptor A diversity region; a 97.56
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 97.56
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 97.55
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 97.54
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 97.49
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 97.46
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 97.44
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 97.44
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 97.38
3m19_A251 Variable lymphocyte receptor A diversity region; a 97.38
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 97.36
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.21
3e6j_A229 Variable lymphocyte receptor diversity region; var 97.2
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 97.2
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 97.15
4g8a_A 635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 97.12
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.11
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 97.1
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 97.07
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 97.05
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 96.93
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 96.87
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 96.84
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 96.79
3e6j_A229 Variable lymphocyte receptor diversity region; var 96.78
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 96.75
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 96.68
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 96.68
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 96.6
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 96.59
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 96.57
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 96.57
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 96.29
4fdw_A401 Leucine rich hypothetical protein; putative cell s 96.29
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 96.22
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 96.19
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 95.95
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 95.95
1w8a_A192 SLIT protein; signaling protein, secreted protein, 95.87
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 95.8
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 95.79
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 95.35
4fdw_A401 Leucine rich hypothetical protein; putative cell s 95.01
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 94.84
1w8a_A192 SLIT protein; signaling protein, secreted protein, 94.82
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 94.72
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 94.71
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 94.56
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 94.51
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 94.43
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 93.51
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 93.41
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 93.25
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 92.21
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 92.11
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 90.06
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 88.28
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 87.84
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 86.65
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 82.39
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 81.75
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
Probab=99.78  E-value=2e-20  Score=194.65  Aligned_cols=362  Identities=14%  Similarity=0.083  Sum_probs=183.8

Q ss_pred             ccccC----CCChHHHHHHHcCC-ChHhHhhhcccchhhHHHhccCCeeEeeccccccCCCCCCCcccchHHHHHHHHHh
Q 012533           15 KDRIS----CMPDSILCHILSFL-STEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLL   89 (461)
Q Consensus        15 ~D~is----~LPd~vL~~Ils~L-~~rd~~rts~lSrrWr~lw~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~   89 (461)
                      .|+++    +||||+|.+||+|| +.+|+++++.|||||++++...+...+..         ..      +......++.
T Consensus         6 ~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~---------~~------~~~~~~~~~~   70 (592)
T 3ogk_B            6 IKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA---------LC------YTATPDRLSR   70 (592)
T ss_dssp             ------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES---------CG------GGSCHHHHHH
T ss_pred             hhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe---------ec------cccChHHHHH
Confidence            45555    89999999999999 89999999999999999875444222211         00      0112233444


Q ss_pred             cCcCCcceEEEEeccC--------CCCcchHHHHHHHHHh--CCceEEEEEccCCCCCCCCCccccCCCcccc-cCc-cc
Q 012533           90 SNSVSISKFSLHCQKK--------PRYLSRLKFWVALAIM--RNVHEIEVNLPVDDPFEEGYEPVELPDCIYN-SET-LE  157 (461)
Q Consensus        90 ~~~~~i~~l~l~~~~~--------~~~~~~~~~wl~~a~~--~~v~~L~l~~~~~~~~~~~~~~~~lp~~l~~-~~~-L~  157 (461)
                      +... ++.+.+.....        .........|+.....  +++++|++..+.       ..... +..+.. +++ |+
T Consensus        71 ~~~~-L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-------i~~~~-~~~l~~~~~~~L~  141 (592)
T 3ogk_B           71 RFPN-LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-------VSDLD-LDRLAKARADDLE  141 (592)
T ss_dssp             HCTT-CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-------CCHHH-HHHHHHHHGGGCC
T ss_pred             hCCC-CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-------ecHHH-HHHHHHhccccCc
Confidence            4444 88888866331        1223445567766553  578888876531       10001 111111 333 77


Q ss_pred             EEEecccccc---cCCCCcccCcccceEEeceee-cCC----c--ccCCCCccceEEEEeecCCCC-----CceeEeecc
Q 012533          158 ILKLETDFVF---KSPSSGICFPRVKKFHVEIYK-PNM----P--DFSICPVLEDLSIDYSLNFDW-----DADISISSQ  222 (461)
Q Consensus       158 ~L~L~~~~~~---~~p~~~~~~~~L~~L~L~~~~-~~~----~--lls~cp~Le~L~L~~c~~~~~-----~~~l~i~~~  222 (461)
                      +|+|.....+   .++.....+++|++|+|.++. .+.    +  +...||.|++|++.++.. ..     +..+...++
T Consensus       142 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~-~~~~~~~l~~~~~~~~  220 (592)
T 3ogk_B          142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF-AKISPKDLETIARNCR  220 (592)
T ss_dssp             EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC-SSCCHHHHHHHHHHCT
T ss_pred             EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC-CccCHHHHHHHHhhCC
Confidence            7777622111   111112356677777777666 332    2  555666666666655432 10     011111245


Q ss_pred             cccEEEEeecccccccCceeEEEecCCceEEEEe---------------------------cceec--eeeeeCCCCceE
Q 012533          223 TLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVN---------------------------DGTLV--SYLVYELHSLCD  273 (461)
Q Consensus       223 ~L~~L~l~~~~~~~~~~~~~~~i~ap~L~~L~l~---------------------------~~~~~--~~~l~~~~~L~~  273 (461)
                      +|++|.+.++...   +........|+|++|.+.                           +....  ...+..+++|++
T Consensus       221 ~L~~L~L~~~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~  297 (592)
T 3ogk_B          221 SLVSVKVGDFEIL---ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK  297 (592)
T ss_dssp             TCCEEECSSCBGG---GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred             CCcEEeccCccHH---HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence            6666666554321   111111233444444443                           32111  111233555666


Q ss_pred             EEEEeeeecccCCccchhHHHHHhhcCCCceEEEEecchhhccccchhhhhccccccCCCCCCeeEEEEEE---------
Q 012533          274 ARLDIDYSRVRSDPVRADHALQLLKKLTNLKSLYLSCGTIYALGEAYRHLYDAHQYFLPTFSNLSFLEVRI---------  344 (461)
Q Consensus       274 ~~i~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~---------  344 (461)
                      +.+..+. .      ....+..++..+++++.|.+.......      .+..    ....+++|++|++..         
T Consensus       298 L~Ls~~~-l------~~~~~~~~~~~~~~L~~L~L~~~~~~~------~l~~----~~~~~~~L~~L~L~~g~~~~~~~~  360 (592)
T 3ogk_B          298 LDLLYAL-L------ETEDHCTLIQKCPNLEVLETRNVIGDR------GLEV----LAQYCKQLKRLRIERGADEQGMED  360 (592)
T ss_dssp             EEETTCC-C------CHHHHHHHHTTCTTCCEEEEEGGGHHH------HHHH----HHHHCTTCCEEEEECCCCSSTTSS
T ss_pred             EecCCCc-C------CHHHHHHHHHhCcCCCEEeccCccCHH------HHHH----HHHhCCCCCEEEeecCcccccccc
Confidence            6555432 1      112344567778888888877221110      0000    112356788888873         


Q ss_pred             -e-ccCcchhhHHhhcCCCCceeEEEeeecCCCcccccCccCCcccccccccceEEEEEE-eCCCCch------HHHHHH
Q 012533          345 -R-EYGWWILPIIFNCSPNLESFVLIMDVNGPEYYVEAGWIEPQFVPYCLQFNVKKIEIL-YGDDDPL------EPVKYL  415 (461)
Q Consensus       345 -~-~~~~~~l~~lL~~~P~Le~L~l~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~i~-~g~~~e~------~l~~~l  415 (461)
                       + .....++..+.+.||+|++|.+....-     ....   ...+.. ...+|+.+.+. ....+.+      +-+..+
T Consensus       361 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l-----~~~~---~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~  431 (592)
T 3ogk_B          361 EEGLVSQRGLIALAQGCQELEYMAVYVSDI-----TNES---LESIGT-YLKNLCDFRLVLLDREERITDLPLDNGVRSL  431 (592)
T ss_dssp             TTCCCCHHHHHHHHHHCTTCSEEEEEESCC-----CHHH---HHHHHH-HCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred             ccCccCHHHHHHHHhhCccCeEEEeecCCc-----cHHH---HHHHHh-hCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence             3 234455677777788888888833211     0000   000111 13468888875 2111111      235566


Q ss_pred             HhcCcCCceEEEEee
Q 012533          416 LKNCGVLDKMIFRYV  430 (461)
Q Consensus       416 l~~a~~Le~~~i~~~  430 (461)
                      +.+.+.|+++.+..+
T Consensus       432 ~~~~~~L~~L~L~~~  446 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLR  446 (592)
T ss_dssp             HHHCTTCCEEEEECC
T ss_pred             HHhCCCCCEEEEecC
Confidence            788999999999863
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 461
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 1e-07
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 8e-07
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 0.003
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 14  KKDRISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSD 73
           K+D I+ +P  I   I ++L  ED + +  +S  W  +     +L    KL    +  S 
Sbjct: 2   KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLW--KKLLISENFVSP 59

Query: 74  NGALTRFENFVDRMLLSNSVSISKFSLHCQKKPRYLSRLK 113
            G         + + L  S    K S   + +  +L  + 
Sbjct: 60  KG--------FNSLNLKLSQKYPKLSQQDRLRLSFLENIF 91
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 98.96
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 98.8
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 98.79
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.64
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.63
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.16
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 98.1
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 98.07
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 97.99
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 97.92
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 97.83
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 97.8
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 97.79
d1p9ag_266 von Willebrand factor binding domain of glycoprote 97.78
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 97.62
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 97.56
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 97.51
d1p9ag_266 von Willebrand factor binding domain of glycoprote 97.49
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 97.26
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 97.26
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 97.25
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 97.2
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 97.1
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 97.05
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 97.05
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 96.32
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 96.31
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 96.07
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 95.74
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 95.46
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 95.39
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 95.08
d2ifga3156 High affinity nerve growth factor receptor, N-term 94.45
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 93.85
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 93.75
d2ifga3156 High affinity nerve growth factor receptor, N-term 93.32
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 91.51
d1z7xw1 460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 90.0
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 88.12
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 87.23
d1z7xw1 460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 86.6
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 83.86
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 83.27
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.2e-10  Score=71.06  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=33.3

Q ss_pred             cCCCChHHHHHHHcCCChHhHhhhcccchhhHHHhc
Q 012533           18 ISCMPDSILCHILSFLSTEDAVRTSILSSRWKLVWA   53 (461)
Q Consensus        18 is~LPd~vL~~Ils~L~~rd~~rts~lSrrWr~lw~   53 (461)
                      ++.||+||+.+||++||.+|+++++.|||+|+++..
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999998753
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure