Citrus Sinensis ID: 012541

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
Protein Sequence
MFVRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIFNTVGKTDKWTSVRQRNQRRL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccEEEEEEEEHHHHccccEEEEEEccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEccccccccEEEcccccccccccEEEEEEEEEEEcccccccccEEEEcccccccccccccccEEEEEEEccccccEEccccEEEEEEccHHHHcccccEEEcccccEEEEEcccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccHHHHccccccccccHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccEEEEEEEHHHHHcccEEEEEEccEcEccccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccccccEEEcccccccccccEEEEEEEEEEEEccccccccEEEEEccccccccccccccEEEEEEEEccccEEEccccEEEEEEEEHHHHHcccEEEEEccccEEEEEEccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHccccccHHHEEEEccccccEEEccccccccHHHHHEHEHHHHHHHHHcccccccEHHHHHcccc
Coil and Loop (DISEMBL)
mfvrmprcrrsrpltesllyhpdinkspgaeeKFKEISSAYEvlsddekrsvydrfgeagitgeydglsntsqgvdpfelysaffggsdglfggvgeagginfnfgnkgnfgldirydlhlsfeesifggqrgievscfetcdscggtgakssnciqsckacwgrggvlktqrtpfglisqvstcskcggdgkiiidhcrrcggngevqskrsmkvvippgvsngatmqirgegnfdRRRSLAGDLFVALHvdekqgihrdgLNLFSKISVDYTEAILGTSMEVetvegmkdlripsgvqpgdtvklqqmgvpdinnpsvrgdhLFIVNVlipkdisdpERALVEEIAFlkspgkwhsvstnsTEAAQRKSAKVRDWKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASvgvelpaplwsskpdsflMASVVTVFMITSIFNTvgktdkwtSVRQRNQRRL
Flexible Loop (DISEMBL)
mfvrmprcrrsrpltesllyhpdinkspgaeeKFKEISSAyevlsddekrsVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGngevqskrsmkvvippgvsngatmqirgEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFlkspgkwhsvstnsTEAAQRKSAKVRDWKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIfntvgktdkwtsvrqrnqrrl
Low Complexity Region (SEG)
MFVRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAffggsdglfggvgEAgginfnfgnkgnfgLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIFNTVGKTDKWTSVRQRNQRRL
Disordered region (IsUnstruct)
***************************************************VYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEV*******VVIP**********I***GNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLR****************GVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKW*****************VRDWKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIFNTVGKTDKWT**********
Disordered Region (DISOPRED)
***R**RCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT**********QGVDPFELYSAFFGGSDGLF************************YDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ***********SLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALV*********************************************WWNSVKCFLGQ************************SFLMASVVTVFMITSIFNTVGKTDKWTS**Q******
Disordered Region (DISEMBL)
**********SRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSP***********************WKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIFNTVGKTDK************
Disordered Region (DISPRO)
*FVRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGIN***GN**NFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTG**S*NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK********************A****************SWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIFNTVGKTDKWTSV********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFVRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIFNTVGKTDKWTSVRQRNQRRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	461	2.2.26 [Sep-21-2011]
B8HLD2	374	Chaperone protein DnaJ OS	yes	no	0.704	0.868	0.430	2e-75
Q8DKR7	373	Chaperone protein DnaJ OS	yes	no	0.687	0.849	0.436	2e-75
Q7VEJ6	378	Chaperone protein DnaJ OS	yes	no	0.720	0.878	0.421	8e-71
B0JW23	374	Chaperone protein DnaJ OS	yes	no	0.700	0.863	0.410	1e-70
Q55505	377	Chaperone protein DnaJ 1	N/A	no	0.715	0.875	0.426	2e-70
B0CAZ0	374	Chaperone protein DnaJ OS	yes	no	0.698	0.860	0.406	2e-70
Q114R3	374	Chaperone protein DnaJ OS	yes	no	0.702	0.866	0.412	5e-70
B2J3J3	375	Chaperone protein DnaJ OS	yes	no	0.709	0.872	0.424	3e-69
B7KEJ8	375	Chaperone protein DnaJ OS	yes	no	0.713	0.877	0.407	5e-69
Q8YUA5	376	Chaperone protein DnaJ OS	yes	no	0.702	0.861	0.443	4e-68

>sp|B8HLD2|DNAJ_CYAP4 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dnaJ PE=3 SV=1

 Score =  283 bits (724), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/332 (43%), Positives = 203/332 (61%), Gaps = 7/332 (2%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NK  GAEE+FKEI+ AYEVLSD E R+ YDRFGEAG++G   G  +        +
Sbjct: 31  YHPDVNKEAGAEERFKEINRAYEVLSDPETRARYDRFGEAGVSGAAAGYGDMGDMGGFAD 90

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
           ++ + F G    FGGVG          ++G+   D+R+DL L F E+IFGG++ I ++  
Sbjct: 91  IFESIFSG----FGGVGAGTSRRRTGPSRGD---DLRFDLKLEFREAIFGGEKQIRITHL 143

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
           ETC +C G+GAK     ++C  C G G V +  RTPFG  +QVS C  C G G++I D C
Sbjct: 144 ETCTTCNGSGAKPGTKPRTCGTCGGAGQVRRATRTPFGSFTQVSVCPTCNGKGQVIEDKC 203

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
             CGGNG+ Q  + +K+ IP GV  G  +++  EG+  ++   AGDL+V L V E     
Sbjct: 204 ETCGGNGQAQVTKKLKITIPAGVDTGTRLRVSNEGDAGQQGGPAGDLYVYLFVQEDPEFR 263

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           R+G+N+ S++ + Y +AILG+ + V TV+G  +L IP G QP   + L+  GVP + NP 
Sbjct: 264 REGINILSEVKISYLQAILGSRLMVNTVDGEVELTIPPGTQPNTVLTLENHGVPRLGNPV 323

Query: 320 VRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351
            RGDHL  V + IP  IS  ER L+E++A ++
Sbjct: 324 SRGDHLITVLLEIPTRISAEERELLEKLAKIR 355

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

>sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2

 Score =  283 bits (723), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 148/339 (43%), Positives = 205/339 (60%), Gaps = 22/339 (6%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG-EYDGLSNTSQG-VDP 77
           YHPD+NK PGAEEKFKEI+ AYEVLSD + R+ YDRFGEAG++G    G S+   G +  
Sbjct: 31  YHPDVNKEPGAEEKFKEINRAYEVLSDPQARANYDRFGEAGVSGVGAAGFSDFGIGDMGG 90

Query: 78  F-ELYSAFFGGSDGLFGGVGEAGGINFNFGNK----GNFGLDIRYDLHLSFEESIFGGQR 132
           F +++  FFGG               F   ++       G D+RYDL L F E++FGG++
Sbjct: 91  FADIFETFFGG---------------FTTSSRRQQGPTRGEDLRYDLKLEFREAVFGGEK 135

Query: 133 GIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 192
            I ++  ETC +C GTGAK      +C  C G G V ++ RTPFG  +Q++TC  CGG G
Sbjct: 136 EIRINHLETCKTCQGTGAKPGTRPVTCSTCGGVGQVRRSARTPFGSFTQLTTCPTCGGSG 195

Query: 193 KIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHV 252
            +I D C  CGG G +Q  + +K+ IP GV NG  +++ GEG+   R    GDL+V L V
Sbjct: 196 VVIEDRCESCGGQGHIQVSKKLKITIPAGVDNGTRLRVSGEGDAGLRGGPPGDLYVYLFV 255

Query: 253 DEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGV 312
                  R+G N+ S+I + Y +AILG  + V TV+G  +L+IP+G QPG  + L+  GV
Sbjct: 256 QPDPEFQREGNNILSRIKISYLQAILGCRISVSTVDGEAELKIPAGTQPGTVLVLEGRGV 315

Query: 313 PDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351
           P + NP  RGDHL  V+V IP  I+  ER L+E++A ++
Sbjct: 316 PRVGNPVARGDHLITVDVEIPTHITHEERELLEKLAKIR 354

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|Q7VEJ6|DNAJ_PROMA Chaperone protein DnaJ OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=dnaJ PE=3 SV=1

 Score =  268 bits (684), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 146/346 (42%), Positives = 200/346 (57%), Gaps = 14/346 (4%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE--YDGLSNTSQGVDP 77
           YHPDINK  GAEE+FKEI  AYEVL D EKR+ YD+FGEAG+ G      + +     D 
Sbjct: 30  YHPDINKEAGAEERFKEIGRAYEVLGDPEKRARYDQFGEAGLGGSAGMPDMGDMGGFADI 89

Query: 78  FELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVS 137
           FE + + FGG           G            G D+RYDL + F +++FG +R I++ 
Sbjct: 90  FETFFSGFGGPGSSGARTQRRGPQQ---------GDDLRYDLTIDFNQAVFGQEREIKIP 140

Query: 138 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID 197
             ETCD C GTGAK      +C  C G G V +  RTPFG  +QVS C  C G G++I D
Sbjct: 141 HLETCDVCRGTGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSDCPTCSGSGQVISD 200

Query: 198 HCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG 257
            C+ CGG G  Q ++ +++ IP GV  G  +++ GEGN   R   +GDL+V L V     
Sbjct: 201 SCQSCGGQGVKQVRKKLRINIPAGVDTGTRLRVSGEGNAGPRGGPSGDLYVFLKVKSHAR 260

Query: 258 IHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINN 317
           + RDGLN+ S+++V Y +AILG ++EV+TV+G   L+IPSG QP   + L   G+P + N
Sbjct: 261 LKRDGLNIHSEVNVSYLQAILGDTIEVDTVDGPTTLQIPSGTQPSAVLILDNKGIPKLGN 320

Query: 318 PSVRGDHLFIVNVLIPKDISDPERALVEEIAFL---KSPGKWHSVS 360
           P  RG+H   VN+ IP  ++D E+ L+E++A     K P   H  S
Sbjct: 321 PVARGNHCISVNIKIPSRLTDDEKILLEKLAIYYSAKGPQNHHHNS 366

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

>sp|B0JW23|DNAJ_MICAN Chaperone protein DnaJ OS=Microcystis aeruginosa (strain NIES-843) GN=dnaJ PE=3 SV=1

 Score =  267 bits (683), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 137/334 (41%), Positives = 195/334 (58%), Gaps = 11/334 (3%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQG--VDP 77
           YHPD+NK PGAEE FKEI+ AYE+LS+ E R+ YDRFGEAG++G   G    + G   D 
Sbjct: 31  YHPDVNKEPGAEEHFKEINRAYEILSEPETRNRYDRFGEAGVSGGAAGFDPDNMGGFADI 90

Query: 78  FELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVS 137
           FE   + FGG  G        G            G D+R D  L F E++FGG++ I + 
Sbjct: 91  FETIFSGFGGMGGQATARRRTGPTR---------GEDLRLDFRLKFREAVFGGEKEIRIR 141

Query: 138 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID 197
             ETC +C G+GA+     ++C  C G G V +  RTPFG  +QVS C  C G G++I +
Sbjct: 142 HLETCQTCKGSGARPGTSSRTCTTCSGTGQVRRATRTPFGTFAQVSVCPTCDGAGEVIEE 201

Query: 198 HCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG 257
            C  CGG+G  Q  + +K+ IP GV NG  +++  EG+   +    GDLFV L V+    
Sbjct: 202 KCDVCGGSGRRQETKKLKITIPAGVDNGMKLRVAREGDAGLKGGPPGDLFVYLTVETDAE 261

Query: 258 IHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINN 317
             R+G ++ S I++ Y +AILG +++V TV+G +DL IP+G QP   + L+  GVP + N
Sbjct: 262 FQREGNDIKSDITISYIQAILGCTIKVNTVDGQEDLTIPAGTQPNTVLILENKGVPKLGN 321

Query: 318 PSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351
           P  RGDH   V + IP  ++  ER L+E++A ++
Sbjct: 322 PVSRGDHRITVKISIPTRVTGEERELLEKLAKVR 355

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

>sp|Q55505|DNAJ1_SYNY3 Chaperone protein DnaJ 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dnaJ1 PE=3 SV=1

 Score =  266 bits (681), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/340 (42%), Positives = 201/340 (59%), Gaps = 10/340 (2%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NK PGAEEKFKEI+ AYEVLS+ E R  YD+FGEAG++G        +QG D   
Sbjct: 31  YHPDVNKEPGAEEKFKEINRAYEVLSEPEIRQRYDQFGEAGVSG------GGAQGFDVGN 84

Query: 80  L--YSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVS 137
           +  ++  F    G FGG            N    G D+R DL L+F+E+IFGG++ I + 
Sbjct: 85  MGDFADIFETIFGGFGGGMGGQQRGRRRANGPTRGDDLRLDLQLTFQEAIFGGEKEIRIP 144

Query: 138 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID 197
             E+C  C GTGAK    +++C  C G G V +  RTPFG  +QVS C  C G G++I  
Sbjct: 145 HLESCQVCEGTGAKPGTGVKTCGTCNGAGQVRRATRTPFGSFAQVSACPTCNGSGEVIEQ 204

Query: 198 HCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG 257
            C  C G G  Q  + +K+ IP GV +G  +++  EG+   R   AGDL+V L V+  + 
Sbjct: 205 KCEACNGVGRKQETKKLKITIPAGVDDGTRLRVGKEGDAGLRGGPAGDLYVFLMVETDKH 264

Query: 258 IHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINN 317
             R+G+N+ S + V Y +AILG  +EV+TV+G  +L IP+G QP   + L+  GVP + N
Sbjct: 265 FVREGMNIRSNLEVSYLQAILGCRLEVDTVDGKAELTIPAGTQPNTVLTLENKGVPKLGN 324

Query: 318 PSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWH 357
            ++RGDHL  V V IP  I+  ER L+E +A +K  G+ H
Sbjct: 325 ATIRGDHLITVKVQIPTRINSEERELLERLATIK--GESH 362

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|B0CAZ0|DNAJ_ACAM1 Chaperone protein DnaJ OS=Acaryochloris marina (strain MBIC 11017) GN=dnaJ PE=3 SV=1

 Score =  266 bits (681), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 137/337 (40%), Positives = 196/337 (58%), Gaps = 15/337 (4%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE----YDGLSNTSQGV 75
           YHPD+NK PGAE+KFKEI+ AYE LSD + R  YD+FGEAG++      Y    +     
Sbjct: 31  YHPDVNKEPGAEDKFKEINKAYETLSDPQMRGRYDQFGEAGVSSAAGAGYQDFGDFGGFA 90

Query: 76  DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIE 135
           D FE + + FGGS     G   +G            G D+R+DL L F E++FGG++ I 
Sbjct: 91  DIFETFFSGFGGSPQ--SGRRRSGPAR---------GEDLRFDLKLKFREAVFGGEQQIR 139

Query: 136 VSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 195
           +S  E+C +C GTGAK     Q+C  C G G V +  RTP G  +QVS C  C G G+++
Sbjct: 140 ISHLESCKTCEGTGAKPGTRPQTCSTCQGSGQVRRMTRTPLGNFTQVSVCPTCNGQGQVV 199

Query: 196 IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEK 255
            + C  CGG G+ Q  + +++ IP GV  G  +++  EG+  ++    GDL+V L V E 
Sbjct: 200 TEKCDSCGGRGQNQVSKKLQIKIPAGVDTGTRLRVSNEGDAGQKGGPPGDLYVYLFVQED 259

Query: 256 QGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDI 315
               RDG N+ S+  + Y +AILG  + V+TV+G + + IP+G QPG  + L+  GVP +
Sbjct: 260 SEFRRDGTNVLSEFKISYLQAILGAQLPVKTVDGEETITIPAGTQPGTVLTLENHGVPRL 319

Query: 316 NNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKS 352
            NP  RGDHL  V + IP  IS  ER L+ ++A +++
Sbjct: 320 GNPVSRGDHLITVIIDIPNRISTEERELLVQLASIRA 356

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

>sp|Q114R3|DNAJ_TRIEI Chaperone protein DnaJ OS=Trichodesmium erythraeum (strain IMS101) GN=dnaJ PE=3 SV=1

 Score =  265 bits (678), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 137/332 (41%), Positives = 196/332 (59%), Gaps = 8/332 (2%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NK PG+EE+FKEI+ AYE+LSD E ++ +DRFGEAG++G      +T       +
Sbjct: 31  YHPDVNKEPGSEERFKEINRAYEILSDPEMKARFDRFGEAGVSGGAASGFSTDFSDSFAD 90

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
           ++ +FF G    FGG G  G            G D+R DL+L F E+IFGG + + +   
Sbjct: 91  IFESFFSG----FGGAGTQG----RRRTGPVRGDDLRLDLNLEFIEAIFGGDKELTIKHL 142

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
           ETC +C G+GAK     Q+C  C G G V +  RTPF   +QVS C  C G G+II + C
Sbjct: 143 ETCGTCNGSGAKPGTKPQTCSTCGGTGQVRRATRTPFSSFTQVSVCPSCNGSGQIIEEKC 202

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
             CGG G+ ++ + +K+ IP GV NG  +++  EG+  R     GDL+V L V       
Sbjct: 203 VDCGGRGQKEATKKIKITIPGGVDNGTRLRVSNEGDAGRMGGPPGDLYVFLSVKNHPEFQ 262

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           RDG+N+ S+I + Y +AILG  +E+ TV+G  +L IPSG QP   + L+  GVP + N  
Sbjct: 263 RDGINIISQIKISYLQAILGCCLEINTVDGKTELTIPSGTQPNAILTLEDKGVPRLGNSV 322

Query: 320 VRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351
            RG HL  + + IP  I+  E+ L+E++A +K
Sbjct: 323 SRGAHLITIEIDIPTKITPEEKELLEKLAKIK 354

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

>sp|B2J3J3|DNAJ_NOSP7 Chaperone protein DnaJ OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dnaJ PE=3 SV=1

 Score =  262 bits (670), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 141/332 (42%), Positives = 200/332 (60%), Gaps = 5/332 (1%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NK PGAE++FKEI+ AYEVLS+ E R+ YDRFG  G++G   G  +        +
Sbjct: 31  YHPDVNKEPGAEDRFKEINRAYEVLSEPETRARYDRFGPEGVSGAGAGFQDVGDMGGFAD 90

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
           ++ + F    G  GG+G         G     G D+R DL L F E++FGG++ I +S  
Sbjct: 91  IFESIF---SGFAGGMGSPTQQRRRSGPA--RGDDLRLDLKLDFREAVFGGEKEIRISHL 145

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
           E C+ C G+GAK     ++C  C G G V +  RTPFG  +QVSTC  C G G +I D C
Sbjct: 146 ENCEVCSGSGAKPGTRPRTCSTCSGSGQVRRVTRTPFGSFTQVSTCPTCNGTGMVIEDKC 205

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
             C G G  Q  + +K+ IP GV NG  ++I  EG+  +R   +GDL+V L V+E +   
Sbjct: 206 DACDGKGANQVTKKLKITIPAGVDNGTRLRISSEGDAGQRGGPSGDLYVYLFVNEDEEFQ 265

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           RDG+N+ S+I + Y +AILG  +EV+TV+G  +L IP+G QP   +KL+  GVP + NP 
Sbjct: 266 RDGINILSEIKISYLQAILGCRLEVDTVDGPVELIIPAGTQPNTVMKLENRGVPRLGNPV 325

Query: 320 VRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351
            RGDH+  V + IP  ++  ER L+E++A +K
Sbjct: 326 SRGDHMLNVLIDIPNKVTPEERELLEKLAKIK 357

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

>sp|B7KEJ8|DNAJ_CYAP7 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7424) GN=dnaJ PE=3 SV=1

 Score =  262 bits (669), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 138/339 (40%), Positives = 200/339 (58%), Gaps = 10/339 (2%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT-GEYDGLSNTSQGVDPF 78
           YHPD+NK  GAEE+FKEI+ AYE+LS+ E R+ YDRFGEAG++ G   G      G    
Sbjct: 31  YHPDVNKEIGAEERFKEINRAYEILSEPETRARYDRFGEAGVSSGAGSGFEYGDMG-GIA 89

Query: 79  ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSC 138
           +++   F G    FGG+G         G     G D+R D  L+F E++FGG++ I +  
Sbjct: 90  DIFETIFSG----FGGMGTGTSSRRRTGPV--RGDDLRLDFKLNFREAVFGGEKEIRIRH 143

Query: 139 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH 198
            ETC  C G+GAK     ++C  C G G V +  RTPFG  +QVS C  C G G++I + 
Sbjct: 144 LETCQVCEGSGAKPGTGSRTCSTCSGSGQVRRATRTPFGTFAQVSVCPTCNGSGEVIEEK 203

Query: 199 CRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGI 258
           C  CGG+G  Q  + +K+ IP GV NG  +++  EG+  +R    GDL+V L V+  +  
Sbjct: 204 CEACGGSGRKQETKKLKITIPAGVDNGTRLRVSREGDAGQRGGPPGDLYVYLSVETDEEF 263

Query: 259 HRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP 318
            R+G+++ S+IS+ Y +AILG  + V TV+G +++ I  G QP   + L   GVP + NP
Sbjct: 264 QREGIDIKSEISISYLQAILGCRLSVNTVDGPEEITIEPGTQPNTVLTLPNRGVPKLGNP 323

Query: 319 SVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWH 357
             RGDHL  +NV IP  ++  ER L+E++A ++  G+ H
Sbjct: 324 VARGDHLITINVSIPTRVNPEERELLEKLAKIR--GESH 360

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

>sp|Q8YUA5|DNAJ_NOSS1 Chaperone protein DnaJ OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=dnaJ PE=3 SV=1

 Score =  259 bits (661), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 149/336 (44%), Positives = 203/336 (60%), Gaps = 12/336 (3%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE---YDGLSNTSQGVD 76
           YHPD+NK PGAEE+FKEI+ AYEVLS+ E R+ YDRFG  G++G    +  +S+     D
Sbjct: 31  YHPDVNKEPGAEERFKEINRAYEVLSEPETRARYDRFGPEGVSGAGVGFQDMSDMGGFAD 90

Query: 77  PFE-LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIE 135
            FE ++S F GG  G        GG           G D+R DL L F E++FGG++ I 
Sbjct: 91  IFESIFSGFAGGGMGGPTQQRRRGGPAR--------GDDLRLDLKLDFREAVFGGEKEIR 142

Query: 136 VSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 195
           +S  ETC++C G+GAK     ++C  C G G V +  RTPFG  +QVSTC  C G G +I
Sbjct: 143 ISHLETCETCSGSGAKPGTRPRTCSTCSGSGQVRRVTRTPFGSFTQVSTCPTCNGTGMVI 202

Query: 196 IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEK 255
            D C  C G G  Q  + +K+ IP GV NG  ++I+ EG+  +R    GDL+V L V+E 
Sbjct: 203 EDKCDTCDGKGTNQVTKKLKITIPAGVDNGTRLRIKDEGDAGQRGGPPGDLYVYLFVNED 262

Query: 256 QGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDI 315
           +   RDG+N+ S+I V Y +AILG  +EV TV+G  +L IP+G QP   +KL+  GVP +
Sbjct: 263 EEFQRDGINVISEIKVSYLQAILGCRLEVNTVDGPVELIIPAGTQPNTVMKLENRGVPRL 322

Query: 316 NNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351
            NP  RGDHL  V + IP  +   ER L+E++A +K
Sbjct: 323 GNPVSRGDHLLTVLIDIPTKVIPEERELLEKLAKIK 358

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
356522869	525	PREDICTED: chaperone protein DnaJ-like [	0.924	0.811	0.627	1e-151
297734356	589	unnamed protein product [Vitis vinifera]	0.937	0.733	0.623	1e-150
255577342	433	chaperone protein DNAj, putative [Ricinu	0.744	0.792	0.724	1e-146
359491526	497	PREDICTED: chaperone protein DnaJ-like [	0.750	0.696	0.705	1e-137
224135637	419	predicted protein [Populus trichocarpa]	0.687	0.756	0.735	1e-129
449439587	481	PREDICTED: chaperone protein DnaJ-like [	0.889	0.852	0.538	1e-125
297830416	518	DNAJ heat shock family protein [Arabidop	0.904	0.805	0.556	1e-121
42564975	517	molecular chaperone Hsp40/DnaJ family pr	0.924	0.823	0.547	1e-121
9294487	438	DnaJ homolog [Arabidopsis thaliana]	0.711	0.748	0.658	1e-117
414865579	705	TPA: hypothetical protein ZEAMMB73_81960	0.895	0.585	0.444	1e-106

>gi|356522869|ref|XP_003530065.1| PREDICTED: chaperone protein DnaJ-like [Glycine max]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 271/432 (62%), Positives = 339/432 (78%), Gaps = 6/432 (1%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NKSPGAE+KFKEIS+AYEVLSDDEKRS+YDRFGE+G+ G+ +G S  + GVDPF+
Sbjct: 94  YHPDMNKSPGAEDKFKEISAAYEVLSDDEKRSLYDRFGESGLQGD-NGGSTGAPGVDPFD 152

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
           L+  FFG SDG+FG VG+ G  NFNF NK N   DIRYDLHLSFEESIFGGQR IEVSCF
Sbjct: 153 LFDTFFGRSDGVFG-VGDEGSFNFNFRNKRNHVHDIRYDLHLSFEESIFGGQREIEVSCF 211

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
           +TC+ C GTGAKS NCI+ C  C GRGG +KTQRTPFG++SQVSTCSKCGG GKII D C
Sbjct: 212 QTCNMCDGTGAKSKNCIKQCTNCGGRGGEMKTQRTPFGMMSQVSTCSKCGGLGKIITDQC 271

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
           RRC G+G+VQSK++M+V IPPGV++G TMQI+G+GNFD++R + GDL+V LHVDEKQGI 
Sbjct: 272 RRCDGSGQVQSKQTMEVEIPPGVNDGDTMQIQGQGNFDKKRQITGDLYVVLHVDEKQGIW 331

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           R+GL+L+SKIS+D+T+AILG+  +V+TVEG++DL+IPSG+QPGD+VKL  +GVPDIN PS
Sbjct: 332 REGLHLYSKISIDFTDAILGSVKKVDTVEGLRDLQIPSGIQPGDSVKLSCLGVPDINKPS 391

Query: 320 VRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKV--RDW 377
           VRGDH FIVNVLIPKDIS  ER LVE++A L++  K  S+S+N     + K  +   RD 
Sbjct: 392 VRGDHYFIVNVLIPKDISGTERVLVEQLASLRASSKRDSLSSNDNGIPKGKFNEFIKRDP 451

Query: 378 KMHC--QGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVF 435
           K     +GIK+VGS W S+K FL   QS+ERFAS+ ++    LW S   + +      VF
Sbjct: 452 KGDASRKGIKNVGSLWGSIKNFLRGGQSEERFASISMDTKVFLWRSGHQNPVPDYFFVVF 511

Query: 436 MITSIFNTVGKT 447
           +IT IF ++ K+
Sbjct: 512 IITWIFASIAKS 523

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734356|emb|CBI15603.3| unnamed protein product [Vitis vinifera]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 277/444 (62%), Positives = 344/444 (77%), Gaps = 12/444 (2%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NKSPGAEEKFKEIS+AYEVLSDDEKRS+YDRFGEAG+ GEYD  +  S+GVDPF+
Sbjct: 69  YHPDLNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGEAGLEGEYDRSNGGSKGVDPFD 128

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
            + AFF  S+G FG  GE GG+NFN  +KGN GLD+RYDL LSFEESIFG Q  IEVSCF
Sbjct: 129 FFDAFFDESNGPFGRWGEPGGMNFNSRSKGNQGLDVRYDLFLSFEESIFGKQEEIEVSCF 188

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
           E CD+CGGTGAKSS+CI++C  C G+GGV+KTQ+TPFG++SQVSTCSKCGGDGKII  HC
Sbjct: 189 EVCDNCGGTGAKSSSCIKTCTNCGGKGGVMKTQKTPFGIMSQVSTCSKCGGDGKIITSHC 248

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
           + CGG+G+VQSK+S++V+IPPGVS+GATMQ+RG+GNFD++R +AGDL++ LHV+EK GI 
Sbjct: 249 QSCGGHGKVQSKQSIEVIIPPGVSDGATMQVRGKGNFDKKRGMAGDLYLVLHVNEKHGIW 308

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           RDGLNL+SK++VDYTEAILGT  +VETVEG++DL+IPSG QPGD+VKL  MGVPDIN PS
Sbjct: 309 RDGLNLYSKVNVDYTEAILGTVKKVETVEGLRDLQIPSGTQPGDSVKLSYMGVPDINRPS 368

Query: 320 VRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKM 379
            RGDH F+VNVLIPKDISD ER LVE++A +++      VS+             +D K 
Sbjct: 369 RRGDHNFVVNVLIPKDISDTERILVEKLASMRTTCNDQPVSSE---------GPAKDQKH 419

Query: 380 HCQGIKS--VGSWWNSVKCFLGQRQSQERFASVGVELPAPLWS-SKPDSFLMASVVTVFM 436
           H    +S    S W S+K FL +  S+  FASV V+    L   S+PDS LM S++TVF+
Sbjct: 420 HASPKRSEHAPSMWKSIKNFLWRNPSRTSFASVSVDTSTLLQRCSRPDSSLMISLLTVFI 479

Query: 437 ITSIFNTVGKTDKWTSVRQRNQRR 460
           IT IF  +GK++      +R + R
Sbjct: 480 ITCIFTLMGKSNTANYCLKREKER 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577342|ref|XP_002529551.1| chaperone protein DNAj, putative [Ricinus communis] gi|223530963|gb|EEF32820.1| chaperone protein DNAj, putative [Ricinus communis]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/345 (72%), Positives = 298/345 (86%), Gaps = 2/345 (0%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NK PGAEEKFKEIS+AYEVLSDDEKRS+YDRFGEAG+ GEYDG S+ SQG+DPF+
Sbjct: 89  YHPDLNKGPGAEEKFKEISAAYEVLSDDEKRSLYDRFGEAGLQGEYDG-SSGSQGMDPFD 147

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
           +Y+AFFG SDG FGG+GEAGGI FN  N G   LDIRY+L++SFEESIFGGQ+ IE SCF
Sbjct: 148 IYNAFFGDSDGFFGGMGEAGGIKFNMRNTGK-DLDIRYNLNVSFEESIFGGQQEIEFSCF 206

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
           ETCD CGGTGAKSS+ I+SC  C GRGGV+KTQRTPFG++SQVSTCSKC GDGK+I DHC
Sbjct: 207 ETCDKCGGTGAKSSSSIKSCADCGGRGGVMKTQRTPFGMMSQVSTCSKCNGDGKLITDHC 266

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
           ++CGGNG V +KRS+K+VIPPG+S+GA M+I+GEGNFD++R +AGDL++ LH++EK GI 
Sbjct: 267 QKCGGNGNVSTKRSIKIVIPPGISDGALMRIQGEGNFDKKRGIAGDLYITLHINEKHGIW 326

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           RDGLNL+SKISVDYT AILGT ++V+TV+G+KDL+IPSG+Q G+TVKL  MGVPD+N P 
Sbjct: 327 RDGLNLYSKISVDYTRAILGTVIKVKTVDGLKDLQIPSGIQNGETVKLSWMGVPDVNKPF 386

Query: 320 VRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNST 364
           VRGDH FIVNVLIPKDISD ERALVEE+A L S  K H    NS+
Sbjct: 387 VRGDHHFIVNVLIPKDISDKERALVEELASLASYRKHHEAPINSS 431

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491526|ref|XP_002279102.2| PREDICTED: chaperone protein DnaJ-like [Vitis vinifera]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/346 (70%), Positives = 296/346 (85%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NKSPGAEEKFKEIS+AYEVLSDDEKRS+YDRFGEAG+ GEYD  +  S+GVDPF+
Sbjct: 69  YHPDLNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGEAGLEGEYDRSNGGSKGVDPFD 128

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
            + AFF  S+G FG  GE GG+NFN  +KGN GLD+RYDL LSFEESIFG Q  IEVSCF
Sbjct: 129 FFDAFFDESNGPFGRWGEPGGMNFNSRSKGNQGLDVRYDLFLSFEESIFGKQEEIEVSCF 188

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
           E CD+CGGTGAKSS+CI++C  C G+GGV+KTQ+TPFG++SQVSTCSKCGGDGKII  HC
Sbjct: 189 EVCDNCGGTGAKSSSCIKTCTNCGGKGGVMKTQKTPFGIMSQVSTCSKCGGDGKIITSHC 248

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
           + CGG+G+VQSK+S++V+IPPGVS+GATMQ+RG+GNFD++R +AGDL++ LHV+EK GI 
Sbjct: 249 QSCGGHGKVQSKQSIEVIIPPGVSDGATMQVRGKGNFDKKRGMAGDLYLVLHVNEKHGIW 308

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           RDGLNL+SK++VDYTEAILGT  +VETVEG++DL+IPSG QPGD+VKL  MGVPDIN PS
Sbjct: 309 RDGLNLYSKVNVDYTEAILGTVKKVETVEGLRDLQIPSGTQPGDSVKLSYMGVPDINRPS 368

Query: 320 VRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTE 365
            RGDH F+VNVLIPKDISD ER LVE++A +++      VS+  TE
Sbjct: 369 RRGDHNFVVNVLIPKDISDTERILVEKLASMRTTCNDQPVSSEGTE 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135637|ref|XP_002322123.1| predicted protein [Populus trichocarpa] gi|222869119|gb|EEF06250.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/317 (73%), Positives = 282/317 (88%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NK  GAE+KFKEIS+AYEVLSDDEKRS+YDRFGEAG+ GE+DG  + SQ VDPFE
Sbjct: 101 YHPDMNKGAGAEDKFKEISAAYEVLSDDEKRSLYDRFGEAGLQGEFDGSGSGSQEVDPFE 160

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
           +Y+ FFGGSDG FGG G  G +NFNF N GN  LDIRYDL+LS EES+FGGQR IEVS F
Sbjct: 161 IYNTFFGGSDGFFGGRGGDGVLNFNFRNMGNQDLDIRYDLYLSLEESVFGGQREIEVSFF 220

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
           ETCDSC GTGAKSS+CI+SC  C GRGGV+KTQRTPFG++SQVSTC+KC G+G++I DHC
Sbjct: 221 ETCDSCSGTGAKSSSCIKSCADCGGRGGVVKTQRTPFGMMSQVSTCAKCSGEGEVITDHC 280

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
           R+CGGNG+++SKRSMKVV P GV++GATM+I+GEG+F+++R +AGDLF++LHV+EKQGI 
Sbjct: 281 RKCGGNGKIRSKRSMKVVFPAGVNDGATMRIQGEGSFNKKRGIAGDLFISLHVNEKQGIW 340

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           R+GLNL+SKI+VDYT+AILGT ++VETVEG+KDL+IPSG+QPGD VKL ++GVPDIN PS
Sbjct: 341 RNGLNLYSKINVDYTQAILGTVLKVETVEGLKDLQIPSGIQPGDVVKLLRLGVPDINKPS 400

Query: 320 VRGDHLFIVNVLIPKDI 336
           VRGDH FIVN+LIPKDI
Sbjct: 401 VRGDHHFIVNILIPKDI 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439587|ref|XP_004137567.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/425 (53%), Positives = 305/425 (71%), Gaps = 15/425 (3%)

Query: 41  YEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGG 100
           + VLSDDEKRS+YD+  EAG+ G+Y  +S  S+GVDPF+++ AFFGGSDGLF      GG
Sbjct: 61  FTVLSDDEKRSLYDQLSEAGVHGDYGVMSRDSRGVDPFDIFDAFFGGSDGLFRESDGIGG 120

Query: 101 INFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCK 160
           IN N  ++    LDI Y LHLSFEES+FGG++ I+ S FETC++C GTGAKS++CI+ C 
Sbjct: 121 INLNQRSEKIQSLDIHYALHLSFEESVFGGEKTIQFSFFETCENCDGTGAKSNSCIKLCA 180

Query: 161 ACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPP 220
            C GRGGV+KTQ+TPFG++SQVS CS+CGGDGK I + CR CGG G++QS + M +VIPP
Sbjct: 181 NCHGRGGVVKTQKTPFGMMSQVSICSECGGDGKKITNLCRSCGGGGQLQSIKKMSLVIPP 240

Query: 221 GVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGT 280
           GVS+GATM+I+ EG+ D +R + GDL++ LH+ EK GI RDG++L+S IS+DYTEAILGT
Sbjct: 241 GVSDGATMKIQREGSSDMKRGMTGDLYIMLHIGEKHGIWRDGIHLYSNISIDYTEAILGT 300

Query: 281 SMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPE 340
           +++VETVEG+KDL+IP+GVQPGD V+L  MG+PDIN PSVRGDHLFIVNV IPK +SD E
Sbjct: 301 TVKVETVEGLKDLQIPAGVQPGDRVRLSCMGIPDINKPSVRGDHLFIVNVQIPKRMSDSE 360

Query: 341 RALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKMHC--QGIKSVGSWWNSVKCFL 398
           R  ++E+A LK+  K   V T+             +   H   Q IK   S W+S+K F+
Sbjct: 361 RTKIKELALLKASTKNDEVYTHGMPLGTFDKHTDENQGNHASSQAIKRHRSLWSSIKYFI 420

Query: 399 GQRQSQERFASVGVELPAP-------LWSSKPDSFLMASVVTVFMITSIFNTVGKTDKWT 451
            +RQ +E FAS+G+E+  P       L SS  DS +M     V ++TS+F  +G+   WT
Sbjct: 421 RKRQPREGFASIGIEISKPSCWRPLKLHSSYTDSLIM-----VVIVTSVF-LMGRNYFWT 474

Query: 452 SVRQR 456
            +R++
Sbjct: 475 LLRRK 479

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830416|ref|XP_002883090.1| DNAJ heat shock family protein [Arabidopsis lyrata subsp. lyrata] gi|297328930|gb|EFH59349.1| DNAJ heat shock family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/428 (55%), Positives = 310/428 (72%), Gaps = 11/428 (2%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NK+PGAE+KFK+IS+AYEVLSD+EKRSVYDRFGEAG+  +++G  +TS GVDPF+
Sbjct: 90  YHPDMNKNPGAEDKFKQISAAYEVLSDEEKRSVYDRFGEAGLERDFNGSQDTSPGVDPFD 149

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
           LYSAFFGGSDG FG +GE+GG+ F+F NK +  LDIR DL LSFEE++FG +R IEVS  
Sbjct: 150 LYSAFFGGSDGFFGEMGESGGMGFDFMNKRSLDLDIRCDLRLSFEEAVFGVKREIEVSYL 209

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
           ETCD CGGTGAKSSN I+ C +C G+G V+ +QRTPFG++SQVSTCSKCGG+GKII D C
Sbjct: 210 ETCDGCGGTGAKSSNAIKQCSSCDGKGRVMNSQRTPFGIMSQVSTCSKCGGEGKIITDKC 269

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
           R+C GNG ++S++ M VV+PPGVS+ ATM+I+GEGN D+R   AGDLF+ L VDEK+GI 
Sbjct: 270 RKCIGNGRLRSRKKMDVVVPPGVSDRATMRIQGEGNVDKRSGRAGDLFIVLQVDEKRGIR 329

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           R+GLNL+S I++D+T+AILG + +VETVEG  DLRIP G QPGDTVKL + GVPD + PS
Sbjct: 330 REGLNLYSNINIDFTDAILGVTTKVETVEGTMDLRIPPGTQPGDTVKLPRKGVPDTDRPS 389

Query: 320 VRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKM 379
           +RGDH F+V V IPK +S+ ER LVEE  F        S   N T        +  +   
Sbjct: 390 IRGDHCFVVKVSIPKKLSERERKLVEE--FSSLRRSSSSTGPNET--------RQEEHSF 439

Query: 380 HCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSK-PDSFLMASVVTVFMIT 438
             +  K   S W+ +K F+    S+ +F ++ +    PL   K  ++ ++ SV+ + +IT
Sbjct: 440 GSEPRKEPPSLWHKMKNFIRPEDSRTKFGTMSLNPSLPLRGMKVSETSIVISVLALCVIT 499

Query: 439 SIFNTVGK 446
           S    V K
Sbjct: 500 SAVALVQK 507

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42564975|ref|NP_188410.2| molecular chaperone Hsp40/DnaJ family protein [Arabidopsis thaliana] gi|115646890|gb|ABJ17154.1| At3g17830 [Arabidopsis thaliana] gi|332642491|gb|AEE76012.1| molecular chaperone Hsp40/DnaJ family protein [Arabidopsis thaliana]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/440 (54%), Positives = 321/440 (72%), Gaps = 14/440 (3%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NK+PGAE+KFK+IS+AYEVLSD+EKRS YDRFGEAG+ G+++G  +TS GVDPF+
Sbjct: 90  YHPDMNKNPGAEDKFKQISAAYEVLSDEEKRSAYDRFGEAGLEGDFNGSQDTSPGVDPFD 149

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
           LYSAFFGGSDG FGG+GE+GG+ F+F NK +  LDIRYDL LSFEE++FG +R IEVS  
Sbjct: 150 LYSAFFGGSDGFFGGMGESGGMGFDFMNKRSLDLDIRYDLRLSFEEAVFGVKREIEVSYL 209

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
           ETCD CGGTGAKSSN I+ C +C G+G V+ +QRTPFG++SQVSTCSKCGG+GK I D C
Sbjct: 210 ETCDGCGGTGAKSSNSIKQCSSCDGKGRVMNSQRTPFGIMSQVSTCSKCGGEGKTITDKC 269

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
           R+C GNG +++++ M VV+PPGVS+ ATM+I+GEGN D+R   AGDLF+ L VDEK+GI 
Sbjct: 270 RKCIGNGRLRARKKMDVVVPPGVSDRATMRIQGEGNMDKRSGRAGDLFIVLQVDEKRGIR 329

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           R+GLNL+S I++D+T+AILG + +VETVEG  DLRIP G QPGDTVKL + GVPD + PS
Sbjct: 330 REGLNLYSNINIDFTDAILGATTKVETVEGSMDLRIPPGTQPGDTVKLPRKGVPDTDRPS 389

Query: 320 VRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKM 379
           +RGDH F+V + IPK +S+ ER LVEE + L+      S ST  TE  Q + +   + + 
Sbjct: 390 IRGDHCFVVKISIPKKLSERERKLVEEFSSLRR----SSSSTGPTETRQEEQSFGSEPRK 445

Query: 380 HCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSK-PDSFLMASVVTVFMIT 438
                    S W+ +K F+    S+ +F ++ +    PL   K  ++ +  SV+ + +IT
Sbjct: 446 E-------PSLWHKMKNFIRPEDSRTKFGTMSLNPSLPLRRMKVSETSIAFSVLALCVIT 498

Query: 439 SIFNTVGKTDKWTSVRQRNQ 458
           S    V K  K   ++Q+ +
Sbjct: 499 SAVALVQK--KGNRLKQKKE 516

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294487|dbj|BAB02706.1| DnaJ homolog [Arabidopsis thaliana]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/328 (65%), Positives = 272/328 (82%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NK+PGAE+KFK+IS+AYEVLSD+EKRS YDRFGEAG+ G+++G  +TS GVDPF+
Sbjct: 90  YHPDMNKNPGAEDKFKQISAAYEVLSDEEKRSAYDRFGEAGLEGDFNGSQDTSPGVDPFD 149

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
           LYSAFFGGSDG FGG+GE+GG+ F+F NK +  LDIRYDL LSFEE++FG +R IEVS  
Sbjct: 150 LYSAFFGGSDGFFGGMGESGGMGFDFMNKRSLDLDIRYDLRLSFEEAVFGVKREIEVSYL 209

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
           ETCD CGGTGAKSSN I+ C +C G+G V+ +QRTPFG++SQVSTCSKCGG+GK I D C
Sbjct: 210 ETCDGCGGTGAKSSNSIKQCSSCDGKGRVMNSQRTPFGIMSQVSTCSKCGGEGKTITDKC 269

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
           R+C GNG +++++ M VV+PPGVS+ ATM+I+GEGN D+R   AGDLF+ L VDEK+GI 
Sbjct: 270 RKCIGNGRLRARKKMDVVVPPGVSDRATMRIQGEGNMDKRSGRAGDLFIVLQVDEKRGIR 329

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           R+GLNL+S I++D+T+AILG + +VETVEG  DLRIP G QPGDTVKL + GVPD + PS
Sbjct: 330 REGLNLYSNINIDFTDAILGATTKVETVEGSMDLRIPPGTQPGDTVKLPRKGVPDTDRPS 389

Query: 320 VRGDHLFIVNVLIPKDISDPERALVEEI 347
           +RGDH F+V + IPK +S+ ER LVEE 
Sbjct: 390 IRGDHCFVVKISIPKKLSERERKLVEEF 417

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414865579|tpg|DAA44136.1| TPA: hypothetical protein ZEAMMB73_819602 [Zea mays]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/470 (44%), Positives = 289/470 (61%), Gaps = 57/470 (12%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NKSP AEEKFKEIS+AYEVLSD +KRS+YDRFGE G++G+Y      + G+DP+E
Sbjct: 112 YHPDMNKSPEAEEKFKEISAAYEVLSDQDKRSLYDRFGEEGLSGDYRNGDIGTHGIDPYE 171

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
           L++AFFG SD LFG    +GG +++   K N  L+I Y+L LSFEESI GG+R I V   
Sbjct: 172 LFNAFFGSSDKLFGDSMGSGGFHYSAEAKDNRALNISYNLLLSFEESILGGKREINVFRH 231

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
           ETC +C GTGAK SN I  C  C G+G ++KTQRTPFG++SQ+S+C  C G GK+I +HC
Sbjct: 232 ETCGTCHGTGAKCSNDITECTRCRGQGRLMKTQRTPFGIVSQISSCLNCEGSGKVITEHC 291

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
             C G+G VQ +R +KV IP G+ +G+T++I G GN D++R  +GDL++ + V++KQGIH
Sbjct: 292 TECYGSGRVQIERIIKVDIPGGIDDGSTIRISGGGNVDKQRGASGDLYIFVRVNKKQGIH 351

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           RDGLNL+S  SVDYT+ ILGT+++VET+EG+KDL IP G QPG+ +K  Q+GVPDI  P+
Sbjct: 352 RDGLNLYSDASVDYTDVILGTTVKVETIEGLKDLHIPPGTQPGENLKFSQLGVPDIKKPN 411

Query: 320 VRGDHLFIVNVLIPK----------------------DISDP------------------ 339
           VRGDH F++ V+I +                      ++ D                   
Sbjct: 412 VRGDHYFMIKVVITEVGDGTNTKFWKDKWLYGWQLQPEVEDKHVFSIAPNGIYSTKIAYE 471

Query: 340 -------ERALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKMHCQGIKSVGSWWN 392
                  ER LVEE+A LK        + N +     K    R+   H    +   S+W 
Sbjct: 472 GFFLGGQERLLVEELAALKK-------AQNISVPEPTKIENFRERNHHPSAKRR--SFWG 522

Query: 393 SVKCFLGQRQSQERFASVGVELPAPLWSS-KPDSFLMASVVTVFMITSIF 441
            V  F    +  +RFAS+ V+   P W+S +     +  ++  F++T+IF
Sbjct: 523 RVWNFFRDDKGDKRFASISVQPIIPGWNSCRGTDTAVPLLLKGFLMTAIF 572

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
TAIR|locus:2088585	517	AT3G17830 [Arabidopsis thalian	0.924	0.823	0.511	5.8e-114
TAIR|locus:2016234	500	AT1G80030 [Arabidopsis thalian	0.817	0.754	0.435	1.3e-84
TAIR|locus:2140035	447	AT4G39960 [Arabidopsis thalian	0.715	0.738	0.409	5.1e-67
TAIR|locus:2041258	442	AT2G22360 [Arabidopsis thalian	0.687	0.717	0.416	2.2e-66
TIGR_CMR|BA_4538	371	BA_4538 "chaperone protein dna	0.694	0.862	0.334	5.6e-52
TIGR_CMR|GSU_0034	373	GSU_0034 "chaperone protein dn	0.498	0.616	0.344	2.3e-50
TIGR_CMR|CHY_0416	381	CHY_0416 "chaperone protein dn	0.698	0.845	0.356	3.6e-50
UNIPROTKB|P95830	378	dnaJ "Chaperone protein DnaJ"	0.698	0.851	0.328	1.4e-48
TIGR_CMR|DET_1398	356	DET_1398 "co-chaperone protein	0.687	0.890	0.325	1.6e-45
UNIPROTKB|Q47XI7	378	dnaJ "Chaperone protein DnaJ"	0.520	0.634	0.321	1.8e-44

TAIR|locus:2088585 AT3G17830 [Arabidopsis thaliana (taxid:3702)]

 Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
 Identities = 225/440 (51%), Positives = 299/440 (67%)

Query:    20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
             YHPD+NK+PGAE+KFK+IS+AYEVLSD+EKRS YDRFGEAG+ G+++G  +TS GVDPF+
Sbjct:    90 YHPDMNKNPGAEDKFKQISAAYEVLSDEEKRSAYDRFGEAGLEGDFNGSQDTSPGVDPFD 149

Query:    80 LYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCF 139
             LYSA             E+              LDIRYDL LSFEE++FG +R IEVS  
Sbjct:   150 LYSAFFGGSDGFFGGMGESGGMGFDFMNKRSLDLDIRYDLRLSFEEAVFGVKREIEVSYL 209

Query:   140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
             ETCD CGGTGAKSSN I+ C +C G+G V+ +QRTPFG++SQVSTCSKCGG+GK I D C
Sbjct:   210 ETCDGCGGTGAKSSNSIKQCSSCDGKGRVMNSQRTPFGIMSQVSTCSKCGGEGKTITDKC 269

Query:   200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
             R+C GNG +++++ M VV+PPGVS+ ATM+I+GEGN D+R   AGDLF+ L VDEK+GI 
Sbjct:   270 RKCIGNGRLRARKKMDVVVPPGVSDRATMRIQGEGNMDKRSGRAGDLFIVLQVDEKRGIR 329

Query:   260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
             R+GLNL+S I++D+T+AILG + +VETVEG  DLRIP G QPGDTVKL + GVPD + PS
Sbjct:   330 REGLNLYSNINIDFTDAILGATTKVETVEGSMDLRIPPGTQPGDTVKLPRKGVPDTDRPS 389

Query:   320 VRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKM 379
             +RGDH F+V + IPK +S+ ER LVEE + L+      S ST  TE  Q + +   + + 
Sbjct:   390 IRGDHCFVVKISIPKKLSERERKLVEEFSSLRRS----SSSTGPTETRQEEQSFGSEPRK 445

Query:   380 HCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMA-SVVTVFMIT 438
                      S W+ +K F+    S+ +F ++ +    PL   K     +A SV+ + +IT
Sbjct:   446 E-------PSLWHKMKNFIRPEDSRTKFGTMSLNPSLPLRRMKVSETSIAFSVLALCVIT 498

Query:   439 SIFNTVGKTDKWTSVRQRNQ 458
             S    V K  K   ++Q+ +
Sbjct:   499 SAVALVQK--KGNRLKQKKE 516

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2016234 AT1G80030 [Arabidopsis thaliana (taxid:3702)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 169/388 (43%), Positives = 242/388 (62%)

Query:    20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
             YHPD+NK PGA EKFKEIS+AYEVLSD++KR++YD++GEAG+     G S      +PF+
Sbjct:   102 YHPDVNKEPGATEKFKEISAAYEVLSDEQKRALYDQYGEAGVKSTVGGASGPYTS-NPFD 160

Query:    80 LYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCF 139
             L+               +A               D+RYD+ L   E+IFG ++  +++  
Sbjct:   161 LFETFFGASMGGFPGMDQADFGRTRRSRVTKGE-DLRYDITLELSEAIFGSEKEFDLTHL 219

Query:   140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
             ETC++C GTGAK+ + ++ C  C GRG V++T++TPFG+ SQVS C  CGGDG++I ++C
Sbjct:   220 ETCEACAGTGAKAGSKMRICSTCGGRGQVMRTEQTPFGMFSQVSICPNCGGDGEVISENC 279

Query:   200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
             R+C G G V+ K+S+KV IPPGVS G+ +++ GEG+   R    GDL+V L V++ +GI 
Sbjct:   280 RKCSGEGRVRIKKSIKVKIPPGVSAGSILRVAGEGDSGPRGGPPGDLYVYLDVEDVRGIE 339

Query:   260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
             RDG+NL S +S+ Y +AILG  ++V+TVEG  +L+IP G QPGD + L + GVP +N PS
Sbjct:   340 RDGINLLSTLSISYLDAILGAVVKVKTVEGDTELQIPPGTQPGDVLVLAKKGVPKLNRPS 399

Query:   320 VRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPG--------KWHSVSTNSTEAAQRKS 371
             +RGDHLF V V +P  IS  ER L+EE+A LK           K    ST ST  +  ++
Sbjct:   400 IRGDHLFTVKVSVPNQISAGERELLEELASLKDTSSNRSRTRAKPQQPSTLSTAPSGSEN 459

Query:   372 AKVRDWKMHCQGIKSVGSWWNSVKCFLG 399
              K  + K   +  +     WN++K F G
Sbjct:   460 KK-DEVKEENEEPEQENYLWNNIKEFAG 486

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

TAIR|locus:2140035 AT4G39960 [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 138/337 (40%), Positives = 198/337 (58%)

Query:    12 RPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNT 71
             R L  S  YHPD+NK  GAE+KFKEIS+AYE+LSDDEKRS+YDR+GEAG+ G   G+   
Sbjct:   106 RKLARS--YHPDVNKDAGAEDKFKEISNAYEILSDDEKRSLYDRYGEAGVKGA--GMGGM 161

Query:    72 SQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQ 131
                 +PF+L+ +                              D  Y L L+F+E++FG +
Sbjct:   162 GDYSNPFDLFESLFEGMGGMGGMGGGMGSRGSRSRAIDGE--DEYYSLILNFKEAVFGIE 219

Query:   132 RGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 191
             + IE+S  E+C +C G+GAK+      CK C G+G V+ + RTP G+  QV TCS C G 
Sbjct:   220 KEIEISRLESCGTCNGSGAKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGT 279

Query:   192 GKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALH 251
             G+I    C  C G+G V+  + + + +P GV +G+ +++RGEGN  +R    GDLF  + 
Sbjct:   280 GEIS-KPCGACSGDGRVRRTKRISLKVPAGVDSGSRLRVRGEGNAGKRGGSPGDLFAVIE 338

Query:   252 VDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMG 311
             V     + RD  N+     + Y +AILGT+++V TV+G  DL++P+G QP  T+ + + G
Sbjct:   339 VIPDPVLKRDDTNILYTCKISYVDAILGTTLKVPTVDGEVDLKVPAGTQPSTTLVMAKKG 398

Query:   312 VPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 348
             VP +N   +RGD L  V V IPK +S  E+ LVEE+A
Sbjct:   399 VPVLNKSKMRGDQLVRVQVEIPKRLSKEEKMLVEELA 435

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2041258 AT2G22360 [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 137/329 (41%), Positives = 196/329 (59%)

Query:    20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
             YHPD+NK PGAEEKFKEIS+AYEVLSDDEK+S+YDR+GEAG+ G   G  N     +PF+
Sbjct:   113 YHPDVNKDPGAEEKFKEISNAYEVLSDDEKKSLYDRYGEAGLKGAA-GFGNGDFS-NPFD 170

Query:    80 LYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCF 139
             L+ +              +               D  Y L L+F+E++FG ++ IE+S  
Sbjct:   171 LFDSLFEGFGGGMGRGSRSRAVDGQ---------DEYYTLILNFKEAVFGMEKEIEISRL 221

Query:   140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
             E+C +C G+GAK       C  C G+G V+   RTP G+  QV TCS C G G+I    C
Sbjct:   222 ESCGTCEGSGAKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQVMTCSSCNGTGEISTP-C 280

Query:   200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
               C G+G V+  + + + +P GV +G+ +++RGEGN  +R    GDLFV + V     + 
Sbjct:   281 GTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRGEGNAGKRGGSPGDLFVVIEVIPDPILK 340

Query:   260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
             RD  N+     + Y +AILGT+++V TV+G  DL++P+G QP  T+ + + GVP +N  +
Sbjct:   341 RDDTNILYTCKISYIDAILGTTLKVPTVDGTVDLKVPAGTQPSTTLVMAKKGVPVLNKSN 400

Query:   320 VRGDHLFIVNVLIPKDISDPERALVEEIA 348
             +RGD L  V V IPK +S  E+ L+EE+A
Sbjct:   401 MRGDQLVRVQVEIPKRLSKEEKKLIEELA 429

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TIGR_CMR|BA_4538 BA_4538 "chaperone protein dnaJ" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 110/329 (33%), Positives = 171/329 (51%)

Query:    20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
             YHPD++K   A EKFKE+  AYEVLSDD+KR+ YD+FG AG    + G          F 
Sbjct:    32 YHPDVSKEENAIEKFKEVQEAYEVLSDDQKRAQYDQFGHAGANQGFGGFGGGGDFGGGFG 91

Query:    80 LYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCF 139
                              +                D++Y + L FEE+IFG +  +E+   
Sbjct:    92 FEDIFSSFFGGGGGRRRDPNAPRQGA--------DLQYQVTLEFEEAIFGKELNVEIPVE 143

Query:   140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
             + CD+C G+GAK     ++CK C G G V   Q TPFG I     CS C G G++I + C
Sbjct:   144 DPCDTCKGSGAKPGTSKETCKHCSGSGQVSVEQNTPFGRIVNRQACSHCSGTGQMIKEKC 203

Query:   200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
               C G+G+V+ ++ + V IP G+ NG  +++ G+G        AGDL+V +HV   +   
Sbjct:   204 TTCHGSGKVRKRKKINVKIPAGIDNGQQIRVSGKGEAGVNGGPAGDLYVVVHVRSHEFFE 263

Query:   260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
             R+G ++  ++ + + +  LG  +EV TV G   L+IP+G Q G   +L+  G P++    
Sbjct:   264 REGDHIICEMPLTFAQMALGAEVEVPTVHGKVKLKIPAGTQTGTEFRLKGKGAPNVRGYG 323

Query:   320 VRGDHLFIVNVLIPKDISDPERALVEEIA 348
              +GD   +V V++P  ++  ++ L+ E A
Sbjct:   324 -QGDQYVVVRVVVPTKLTSHQKDLLREFA 351

GO:0009408 "response to heat" evidence=ISS

TIGR_CMR|GSU_0034 GSU_0034 "chaperone protein dnaJ" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 395 (144.1 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
 Identities = 81/235 (34%), Positives = 131/235 (55%)

Query:   114 DIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQR 173
             D++Y++ LSFEE+ FG ++ I+V   + C  CGG+GAK     + C  C G G V   Q 
Sbjct:   121 DLQYNMELSFEEAAFGAEKEIQVPYGKRCGDCGGSGAKPGTEPKVCPTCRGAGQVRFQQ- 179

Query:   174 TPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGE 233
                G  S   TC+ C G+G+++ + C  C G+G ++  +++ V +P GV  G  +++ GE
Sbjct:   180 ---GFFSVSKTCNHCNGEGRVVENPCTSCRGSGMIRDTKTLSVKVPAGVETGTRLKLSGE 236

Query:   234 GNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDL 293
             G    +    GDL+VA+ V E     R+  ++  +I V + +A LG  +EV T++G   +
Sbjct:   237 GGQGIKGGGNGDLYVAIAVREHPIFTREDNDVLCEIPVSFVQAALGCEIEVPTLDGKVSM 296

Query:   294 RIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 348
             +IP G Q G   +L+  GVP +     RGD L I+ V  P +++  +R L+EE A
Sbjct:   297 KIPEGTQSGRIFRLRGKGVPQLQGYG-RGDQLVIIKVETPSNLNKRQRELLEEFA 350

GO:0009408 "response to heat" evidence=ISS

TIGR_CMR|CHY_0416 CHY_0416 "chaperone protein dnaJ" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 118/331 (35%), Positives = 175/331 (52%)

Query:    20 YHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVD-P 77
             YHPD+NK  P A EKFKEI+ AYEVLSD EKR+ YD+FG AG+ G + G      G    
Sbjct:    31 YHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRARYDQFGHAGVDGNFAGQGGFGGGAGIN 90

Query:    78 FE-LYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEV 136
             FE ++S                               DI   L L+ EE++FGG++ + V
Sbjct:    91 FEDIFSGFGGFGDLFDMVFGSGRKARQGPVPGD----DIEAVLELTLEEAVFGGEKELRV 146

Query:   137 SCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 196
             +  ETC  C G GA+    I +C  C GRG + +  +T FG + +   CS C G+GKI  
Sbjct:   147 TRTETCGHCHGNGAEPGTPIITCPTCQGRGQIHQEVKTLFGRMVRSQVCSTCRGEGKIPK 206

Query:   197 DHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ 256
               CR CGG+G V+  RS+ V IPPG+ +G  ++I G G   R     GDL+V + +   +
Sbjct:   207 TPCRECGGSGLVRKTRSITVKIPPGIDHGHRLRIAGGGEAGRFGGPPGDLYVYIKIKPHK 266

Query:   257 GIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKD-LRIPSGVQPGDTVKLQQMGVPDI 315
                R+ ++L  +  + + +A LG  +E+ T++G  + L IP G Q G    ++  GVP +
Sbjct:   267 LFKREDIHLKLEKEISFVQAALGAKVEIPTIDGGTEILEIPEGTQTGTVFTIKGKGVPVV 326

Query:   316 NNPSVRGDHLFIVNVLIPKDISDPERALVEE 346
             N  S RG+    V V+ P  +++ ++ L+ E
Sbjct:   327 NG-SGRGNLYVTVKVVTPTKLTERQKQLLRE 356

GO:0006457 "protein folding" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|P95830 dnaJ "Chaperone protein DnaJ" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 108/329 (32%), Positives = 167/329 (50%)

Query:    20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
             YHPDINK PGAE+K+KE+  AYE LSDD+KR+ YD++G AG  G + G      G   F 
Sbjct:    32 YHPDINKEPGAEDKYKEVQEAYETLSDDQKRAAYDQYGAAGANGGFGGAG----GFGGFN 87

Query:    80 LYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCF 139
                A                              D++Y ++L+FEE+IFG ++ ++    
Sbjct:    88 --GAGGFGGFEDIFSSFFGGGGSSRNPNAPRQGDDLQYRVNLTFEEAIFGTEKEVKYHRE 145

Query:   140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
               C +C G+GAK      +C  C G G +    +TP G++ +  TC  C G GK I   C
Sbjct:   146 AGCRTCNGSGAKPGTSPVTCGRCHGAGVINVDTQTPLGMMRRQVTCDVCHGRGKEIKYPC 205

Query:   200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
               C G G  +   S+ V IP GV  G  +++ G+G         GDL+V + V+      
Sbjct:   206 TTCHGTGHEKQAHSVHVKIPAGVETGQQIRLAGQGEAGFNGGPYGDLYVVVSVEASDKFE 265

Query:   260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
             R+G  +F  +++++ +A LG ++++ TV G  +L IP G Q G   +L+  G P +   +
Sbjct:   266 REGTTIFYNLNLNFVQAALGDTVDIPTVHGDVELVIPEGTQTGKKFRLRSKGAPSLRGGA 325

Query:   320 VRGDHLFIVNVLIPKDISDPERALVEEIA 348
             V GD    VNV+ P  ++D ++  ++E A
Sbjct:   326 V-GDQYVTVNVVTPTGLNDRQKVALKEFA 353

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|DET_1398 DET_1398 "co-chaperone protein DnaJ" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 108/332 (32%), Positives = 171/332 (51%)

Query:    17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFG-EAGITGEYDGLSNTSQGV 75
             ++ +HPD N   GA EKFKEI+ AYEVLS+ EKR+ YDRFG  AG      G      G 
Sbjct:    30 AMKHHPDRNHEDGAAEKFKEINEAYEVLSNPEKRAAYDRFGFSAGSDAFGQG------GF 83

Query:    76 DPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIE 135
             + F+                  A               D+ YD+ ++ EE+  G ++ I 
Sbjct:    84 ENFDFGGLGSIFETFFGGATQSAKRGPRRGP-------DMSYDIRITLEEAATGVEKEIT 136

Query:   136 VSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 195
                 E C  C GTGAK+   +  C  C G G V + Q++ FG  + V+ C KC G+G II
Sbjct:   137 TERLEYCSECSGTGAKAGTSLVKCTNCNGTGQVYQVQKSVFGRFTSVTPCPKCRGEGTII 196

Query:   196 IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEK 255
              + C +C G G+   KR+++V IP GV++G  +++ G G    + + AGD+++ + +   
Sbjct:   197 GEPCAKCRGTGKEYVKRTVQVKIPAGVADGNQIRLNGYGGVGDKGASAGDVYINVSIASH 256

Query:   256 QGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDI 315
                 RDG ++  ++ +++ +A LGT + V  +     L+IPSG Q G    L+  G+P +
Sbjct:   257 ADFKRDGDDVIYELEINFAQAALGTEVNVPGLSTSHKLKIPSGSQNGKYFVLKGKGIPHL 316

Query:   316 NNPSVRGDHLFIVNVLIPKDISDPERALVEEI 347
             N     GD +  +NV+ P+ +S  ++ L EE+
Sbjct:   317 NRFG-SGDEMVHLNVVTPEKLSRKQKQLFEEL 347

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|Q47XI7 dnaJ "Chaperone protein DnaJ" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 365 (133.5 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 79/246 (32%), Positives = 130/246 (52%)

Query:   114 DIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQR 173
             D+RY++ LS E+++ G    I+V  + +C+ C G+GAK     ++C  C G G V   Q 
Sbjct:   119 DLRYNVDLSLEDAVKGKSLEIKVPTYVSCEPCDGSGAKKGTSAKTCSTCHGHGQVQMRQ- 177

Query:   174 TPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGE 233
                GL +   TC  C G GK+I D C  C G G V+  +++ V IP GV  G  +++ GE
Sbjct:   178 ---GLFAVQQTCPTCSGKGKVIADKCTSCRGQGRVEKTKTLSVKIPAGVDTGDRIRLSGE 234

Query:   234 GNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDL 293
             G      + AGDL+V ++V + +   RD  +L+ ++ + +  A LG  +EV T+ G   L
Sbjct:   235 GEAGEHGAPAGDLYVQVNVRDHEIFVRDENHLYCEVPISFVTAALGGDIEVPTLGGKVKL 294

Query:   294 RIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAF-LKS 352
             ++P   Q G   +L+  GV  + + S  GD +  V +  P ++S  +  L+ ++   + S
Sbjct:   295 KVPKETQTGKMFRLRGKGVKSVRS-STTGDLMCKVVIETPVNLSGDQADLLRQLEEKMAS 353

Query:   353 PGKWHS 358
               K HS
Sbjct:   354 SSKKHS 359

GO:0006457 "protein folding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	461
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-120
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-115
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	2e-95
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-85
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	3e-80
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-79
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	6e-77
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	3e-76
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-75
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-73
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-72
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	2e-71
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	3e-71
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	9e-68
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	5e-67
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	3e-66
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	1e-64
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-64
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	1e-63
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	1e-61
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	1e-57
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	2e-57
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	3e-57
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	6e-56
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	8e-55
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	5e-48
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	6e-48
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	4e-46
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	5e-41
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	4e-36
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	6e-26
cd10719	65	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H	8e-21
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	5e-20
pfam00684	65	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain	9e-18
pfam00226	63	pfam00226, DnaJ, DnaJ domain	2e-16
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	1e-11
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	2e-11
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	1e-10
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	3e-10
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	5e-10
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	2e-08
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	1e-04
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	6e-04
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	0.002
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	0.004

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  355 bits (914), Expect = e-120
 Identities = 139/330 (42%), Positives = 194/330 (58%), Gaps = 7/330 (2%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD NK   AEEKFKEI+ AYEVLSD EKR+ YD+FG AG  G   G      G + F+
Sbjct: 28  YHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNG---GGGGGGGGFNGFD 84

Query: 80  LYSAFFGGSDGLFGGV-GEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSC 138
               FFG    +FG   G  GG      +    G D+RYDL L+FEE++FG ++ IE+  
Sbjct: 85  --IGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPR 142

Query: 139 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH 198
            E+C++C GTGAK     ++C  C G G V + Q TPFG   Q  TC  CGG+GKII + 
Sbjct: 143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEP 202

Query: 199 CRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGI 258
           C  C G G V+ ++++ V IP GV  G  +++ G+GN        GDL+V + V   +  
Sbjct: 203 CSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIF 262

Query: 259 HRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP 318
            RDG +L+ ++ + +T+AILG  +EV T++G   L+IP+G Q G   +L+  GVP +   
Sbjct: 263 ERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRLKGKGVPRLRGN 322

Query: 319 SVRGDHLFIVNVLIPKDISDPERALVEEIA 348
             RGD L  V V  PK++S  ++ L+EE+A
Sbjct: 323 G-RGDLLVTVKVETPKNLSKEQKELLEELA 351

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score =  343 bits (883), Expect = e-115
 Identities = 153/335 (45%), Positives = 204/335 (60%), Gaps = 11/335 (3%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE--YDGLSNTSQGVDP 77
           YHPD+NK PGAE++FKEI+ AYEVLSD E R+ YD+FGEAG++G   +  + +     D 
Sbjct: 31  YHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDMGDMGGFADI 90

Query: 78  FELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVS 137
           FE    FF G    FGG G  GG     G +   G D+RYDL L F E+IFGG++ I + 
Sbjct: 91  FE---TFFSG----FGGAGGQGGRRRRRGPQR--GDDLRYDLKLDFREAIFGGEKEIRIP 141

Query: 138 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID 197
             ETC++C G+GAK      +C  C G G V +  RTPFG  +QVS C  C G G++I D
Sbjct: 142 HLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIED 201

Query: 198 HCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG 257
            C  CGG G  Q  + +K+ IP GV  G  +++ GEG+   R    GDL+V L V     
Sbjct: 202 PCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPE 261

Query: 258 IHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINN 317
             RDG+N+ S+I + Y +AILG ++EV+TV+G  +L IP+G QP   + L+  GVP + N
Sbjct: 262 FRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLGN 321

Query: 318 PSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKS 352
           P  RGDHL  V V IP  ISD ER L+E++A +K 
Sbjct: 322 PVARGDHLITVKVKIPTRISDEERELLEKLAKIKG 356

Length = 374

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  291 bits (748), Expect = 2e-95
 Identities = 137/343 (39%), Positives = 190/343 (55%), Gaps = 16/343 (4%)

Query: 20  YHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI-TGEYDGLSNTSQGVDP 77
           YHPD N     AEEKFKEI+ AYEVLSD EKR+ YD+FG AG   G + G      G D 
Sbjct: 32  YHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGFGFGGFGGDF 91

Query: 78  FELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVS 137
            +++  FFGG  G  G             N+   G D+RY+L ++ EE++FG ++ I V+
Sbjct: 92  GDIFEDFFGG--GGGGRRR---------PNRPRRGADLRYNLEITLEEAVFGVKKEIRVT 140

Query: 138 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID 197
              TC +C G+GAK     ++C  C G G V   QRT F   S   TC  C G GKII D
Sbjct: 141 RSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGF--FSFQQTCPTCNGTGKIIKD 198

Query: 198 HCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG 257
            C +C G G V+ K+S+ V IP GV +G  +++ GEG        AGDL+V +HV     
Sbjct: 199 PCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPI 258

Query: 258 IHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINN 317
             RDG +L+ ++ + +TEA LG  +EV T++G   L+IP+G Q G+  +L+  G+P + +
Sbjct: 259 FERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRS 318

Query: 318 PSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVS 360
              RGD    V V  PK++SD ++ L+EE A     G   S  
Sbjct: 319 -GGRGDLYVRVKVETPKNLSDEQKELLEEFAKSLGEGPEQSPG 360

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score =  267 bits (683), Expect = 2e-85
 Identities = 134/349 (38%), Positives = 190/349 (54%), Gaps = 30/349 (8%)

Query: 20  YHPDINKSPG---AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVD 76
           YHPD+N  PG   AE+KFKEI+ AYE+LSD +KR+ YD+FG A       G     QG  
Sbjct: 33  YHPDLN--PGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQGGFGQG-- 88

Query: 77  PFELYSAFFGG-SDGLFGGVGEAGGINFN--FGN----------KGNFGLDIRYDLHLSF 123
                  F GG  D  FGG G+     F   FG           KG    DIRYDL L+F
Sbjct: 89  ------GFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGA---DIRYDLELTF 139

Query: 124 EESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVS 183
           EE+ FG ++ IEV  FE CD C G+GAK  +   +C  C G G V   Q TPFG I  + 
Sbjct: 140 EEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIR 199

Query: 184 TCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLA 243
           TC +C G+GKII D C +CGG G ++ +R +KV IP G+ +G  + +RGEG    +    
Sbjct: 200 TCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPN 259

Query: 244 GDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGD 303
           GDL++ + V       R+G N++ ++ + +T+A LG  +E+ T++G     IP G Q G 
Sbjct: 260 GDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGT 319

Query: 304 TVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKS 352
             +L+  G+P +     RGD +  V + +PK +++ ++ L+ E   L  
Sbjct: 320 KFRLRGKGIPHLRG-RGRGDQIVKVYIEVPKKLTEKQKELLREFEKLSG 367

Length = 386

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score =  253 bits (647), Expect = 3e-80
 Identities = 115/329 (34%), Positives = 177/329 (53%), Gaps = 6/329 (1%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPDINK PGAEEK+KE+  AYE LSD +KR+ YD++G AG  G + G +    G D   
Sbjct: 32  YHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAGGFGGFDGS- 90

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
                FGG + +F      GG   N  N    G D++Y ++L FEE+IFG ++ +  +  
Sbjct: 91  ---GGFGGFEDIFSSFFGGGGARRN-PNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNRE 146

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
            TC +C G+GAK      +C  C G G +    +TP G++ +  TC  C G GK I + C
Sbjct: 147 ATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPC 206

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
           + C G G  +   ++ V IP GV  G  ++++G+G         GDL+V   V+  +   
Sbjct: 207 QTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFE 266

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           RDG  ++  + + + +A LG ++EV TV G  +L+IP+G Q G   +L+  G P +    
Sbjct: 267 RDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKKFRLRGKGAPKLRGGG 326

Query: 320 VRGDHLFIVNVLIPKDISDPERALVEEIA 348
             GD    VN++ P  ++D ++  ++  A
Sbjct: 327 N-GDQHVTVNIVTPTKLNDAQKEALKAFA 354

Length = 380

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  251 bits (643), Expect = 1e-79
 Identities = 126/343 (36%), Positives = 180/343 (52%), Gaps = 22/343 (6%)

Query: 20  YHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPF 78
           YHPD N     AEEKFKEI  AYEVLSD +KR+ YD++G A    E  G      G   F
Sbjct: 32  YHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF--EQGGGGGGFGGGGGF 89

Query: 79  -ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVS 137
            +++   FG    +FGG    G        +   G D+RY++ ++ EE++ G  + I + 
Sbjct: 90  GDIFGDIFG---DIFGGGRGGG------RQRARRGADLRYNMEITLEEAVRGVTKEIRIP 140

Query: 138 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID 197
              TCD+C G+GAK     ++C  C G G V   Q    G  +   TC  C G GKII D
Sbjct: 141 TLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKD 196

Query: 198 HCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR--GEGNFDRRRSLAGDLFVALHVDEK 255
            C++C G G V+ ++++ V IP GV  G   +IR  GEG    R   AGDL+V +HV E 
Sbjct: 197 PCKKCHGQGRVEKEKTLSVKIPAGVDTG--DRIRLSGEGEAGERGGPAGDLYVQIHVKEH 254

Query: 256 QGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDI 315
               RDG +L+ ++ + +T A LG  +EV T++G   L+IP G Q G   +L+  GV  +
Sbjct: 255 PIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGKGVKSV 314

Query: 316 NNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHS 358
            +   RGD    V V  P +++  ++ L+EE       G+ HS
Sbjct: 315 RS-GARGDLYCQVVVETPVNLTKRQKELLEEFEESFESGEKHS 356

Length = 371

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score =  244 bits (625), Expect = 6e-77
 Identities = 126/339 (37%), Positives = 180/339 (53%), Gaps = 22/339 (6%)

Query: 17  SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVD 76
           ++ YHPD NK P AEEKFKEIS AY VLSD EKR+ YDRFG AGI  +Y           
Sbjct: 30  AMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSA--------- 80

Query: 77  PFELYSAFFGGSDGLFGGVGEAGGINFNFGNKG-----NFGLDIRYDLHLSFEESIFGGQ 131
                   F G+D  FGG G+   + F  G +        G D+RYDL+++ EE+ FG +
Sbjct: 81  -----EDIFRGAD--FGGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVR 133

Query: 132 RGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 191
           + I+V   E C +C GTGAK     + C  C G G V  T+ TP G     +TCS C G 
Sbjct: 134 KDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGR 193

Query: 192 GKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALH 251
           G++I   C  C G G+V+  R + V +P G  +G  +++ GEG      + +GDL++ LH
Sbjct: 194 GQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLH 253

Query: 252 VDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMG 311
           V E     R G ++ S+I + +T+A LG  + V T+ G   + IP G Q     +L+  G
Sbjct: 254 VKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKG 313

Query: 312 VPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 350
           +P ++    +GD L  V V  P  ++  ++ L+ E   L
Sbjct: 314 MPRLHG-HGKGDQLVKVIVKTPTKLTQEQKELLREFDEL 351

Length = 377

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score =  242 bits (620), Expect = 3e-76
 Identities = 130/333 (39%), Positives = 190/333 (57%), Gaps = 17/333 (5%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQ---GVD 76
           YHPDINK  GA+EKFKEIS AYEVLSDD+KR+ YD+FG AG    + G         G  
Sbjct: 32  YHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFGGGDFGGGF 91

Query: 77  PFE-LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIE 135
            FE ++S+FFGG     GG       + N   +G    D++Y + L+FEE++FG ++ IE
Sbjct: 92  GFEDIFSSFFGG-----GGRRR----DPNAPRQGA---DLQYTMTLTFEEAVFGKEKEIE 139

Query: 136 VSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 195
           +   ETCD+C G+GAK     ++C  C G G V   Q TPFG +    TC  C G G+ I
Sbjct: 140 IPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI 199

Query: 196 IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEK 255
            + C  C G G+V+ ++ + V IP GV NG  +++ GEG        AGDL+V   V   
Sbjct: 200 KEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPH 259

Query: 256 QGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDI 315
           +   RDG +++ ++ + + +A LG  +EV T+ G   L+IP+G Q G   +L+  GVP++
Sbjct: 260 EFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRLKGKGVPNV 319

Query: 316 NNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 348
                +GD   +V V+ P  ++D ++ L+ E A
Sbjct: 320 RGYG-QGDQYVVVRVVTPTKLTDRQKELLREFA 351

Length = 376

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score =  240 bits (615), Expect = 1e-75
 Identities = 124/341 (36%), Positives = 191/341 (56%), Gaps = 22/341 (6%)

Query: 17  SLLYHPDINKSPG---AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS- 72
           ++ YHPD  ++PG   AEE FKE + AYEVLSD +KR +YD++G       ++GLS T  
Sbjct: 29  AMKYHPD--RNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYG-------HEGLSGTGF 79

Query: 73  QGVDPFE-LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQ 131
            G   F+ ++S+F    +  FG  G   G +      G    D+RYDL L F E+ FG +
Sbjct: 80  SGFSGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGA---DLRYDLTLPFLEAAFGTE 136

Query: 132 RGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 191
           + I +   ETC+ C G+G +      +C  C G G V ++Q    G  S  +TC +C G 
Sbjct: 137 KEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ----GFFSIRTTCPRCRGM 192

Query: 192 GKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALH 251
           GK+I+  C+ C G G V+  ++++V IP GV  G+ +++RGEG    R    GDL+V L 
Sbjct: 193 GKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLT 252

Query: 252 VDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMG 311
           V+  +   RDG ++  K+ + + +A LG  +EV T+EG ++L+IP G QPGD  + +  G
Sbjct: 253 VEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKGKG 312

Query: 312 VPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKS 352
           +P +     RGD +  V V +P  ++  +  L+ E A L+S
Sbjct: 313 IPSLRGGG-RGDQIIEVEVKVPTRLTKKQEELLTEFARLES 352

Length = 366

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score =  235 bits (601), Expect = 2e-73
 Identities = 120/345 (34%), Positives = 180/345 (52%), Gaps = 25/345 (7%)

Query: 20  YHPDIN--KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGV-D 76
           +HPD +      AE+KFKEI  AYEVLSD +KR++YDRFG  G    Y    +      D
Sbjct: 32  WHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQETESGGGFFED 91

Query: 77  PFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGN---------FGLDIRYDLHLSFEESI 127
            F+ +   F     +F         +  FG +            G DIRY++ ++  + I
Sbjct: 92  IFKDFENIFN--RDIF---------DIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLI 140

Query: 128 FGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSK 187
            G +  +E   +ETC  CGGTG +  +   +C  C G G + + +R+ FG+     TC +
Sbjct: 141 NGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCER 200

Query: 188 CGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLF 247
           CGG GKI  ++C  CGG+G ++ +    V IP GV +G  ++I G GN        GDL+
Sbjct: 201 CGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLY 260

Query: 248 VALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG-MKDLRIPSGVQPGDTVK 306
           V + V       R G +L   +++DY +AILGT++EV   EG    L+IP G QP    +
Sbjct: 261 VIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPETVFR 320

Query: 307 LQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 351
           L+  G+P++     RGD +  V+V IPK +S  ER L++E+A  +
Sbjct: 321 LKGKGLPNMRY-GRRGDLIVNVHVEIPKRLSREERKLLKELAKKR 364

Length = 369

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score =  233 bits (597), Expect = 1e-72
 Identities = 118/329 (35%), Positives = 176/329 (53%), Gaps = 27/329 (8%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD NK+P AEEKFKEI+ AY+VLSD EKR +YD+FG A  +G         Q     E
Sbjct: 31  YHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSG-------QQQQGQE 83

Query: 80  LYSAFFGGS--------DGLFGGVGEAGGINFNFGNKGNF-----GLDIRYDLHLSFEES 126
            +S F GG+          +FG     G        +  +     G DI   + +S EE+
Sbjct: 84  GFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEA 143

Query: 127 IFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCS 186
             G    +EV  +  C++CGGTG    +  + C  C G G +   QR  F  ISQ  TC 
Sbjct: 144 YTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEI--YQRGGFFRISQ--TCP 199

Query: 187 KCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDL 246
            CGG+G ++ + C +C G G V  K ++KV IPPGV NG+ +++ G+G+  R     GDL
Sbjct: 200 TCGGEG-VLREPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDL 258

Query: 247 FVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKD-LRIPSGVQPGDTV 305
           ++ + V       R G NL+  +++   EA+LGT +EV  ++G K+ ++IP G + GD +
Sbjct: 259 YIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKI 318

Query: 306 KLQQMGVPDINNPSVRGDHLFIVNVLIPK 334
           ++   G+P +   S  GD +  V++ +PK
Sbjct: 319 RVPGKGMPRLKG-SGYGDLVVRVHIDVPK 346

Length = 382

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score =  230 bits (588), Expect = 2e-71
 Identities = 116/331 (35%), Positives = 185/331 (55%), Gaps = 11/331 (3%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS--QGVDP 77
           YHPD+++  GAEEKFKEIS AY VLSDDEKR  YD+FG AG+    DG S       ++ 
Sbjct: 33  YHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM----DGFSQEDIFNNINF 88

Query: 78  FELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVS 137
            +++  F  G   +F   G  GG           G DI  ++ ++ EE+  G ++ I+V 
Sbjct: 89  EDIFQGFGFGIGNIFDMFGFGGGSRHGPQR----GADIYTEVEITLEEAASGVEKDIKVR 144

Query: 138 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID 197
             + C  C G+ A+  + +++C  C G G V + + T  G +  V+TC  C G+GKI+  
Sbjct: 145 HTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEK 204

Query: 198 HCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG 257
            C  C G G V+  +++ V IP GV  G+ +++ GEG    R    GDL+V + V   + 
Sbjct: 205 PCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKI 264

Query: 258 IHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINN 317
             R+G NL+ +  + + +A LG +++V T++G  +L+IP+G Q G T +L+  G+P +  
Sbjct: 265 FRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHGMPSLRW 324

Query: 318 PSVRGDHLFIVNVLIPKDISDPERALVEEIA 348
            S +G+    V V++PK +S  ++ L+ E A
Sbjct: 325 -SGKGNLYVKVKVVVPKKLSPKQKELLREFA 354

Length = 378

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score =  230 bits (587), Expect = 3e-71
 Identities = 121/337 (35%), Positives = 186/337 (55%), Gaps = 8/337 (2%)

Query: 20  YHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPF 78
           YHPD NK +  AEEKFKEI+ AY+VLSD +K++ YD+FG A   G     S    G D  
Sbjct: 32  YHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSGGFGGFDFS 91

Query: 79  ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSC 138
           ++   F    D  FGG   +     N   +G    DI Y ++L+FEE++FG ++ I V+ 
Sbjct: 92  DM-GGFGDIFDSFFGGGFGSSSRRRNGPQRGA---DIEYTINLTFEEAVFGVEKEISVTR 147

Query: 139 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH 198
            E C++C GTGAK     ++C  C G G +   + TP G     +TC KCGG GK+I D 
Sbjct: 148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDP 207

Query: 199 CRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGI 258
           C +C G G+V+  R +KV +P GV  G  + +RG+G   +     GDL++ + V   +  
Sbjct: 208 CNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTF 267

Query: 259 HRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP 318
            R G +++    + + +A LGT ++V TV+G     +P+G QPG   +L+  GVP +N+ 
Sbjct: 268 KRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTVFRLKGKGVPRVNST 327

Query: 319 SVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGK 355
             RG+    V V IPK ++  ++  +    F+++ G+
Sbjct: 328 G-RGNQYVTVIVDIPKKLNSKQKEAL--TMFMEASGE 361

Length = 380

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score =  221 bits (565), Expect = 9e-68
 Identities = 127/385 (32%), Positives = 199/385 (51%), Gaps = 43/385 (11%)

Query: 17  SLLYHPDINKSPG---AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQ 73
           +L YHPD  K+P    AEE FKE++ AYEVLS+D+KR  YD+FG AG+     G S  S 
Sbjct: 28  ALKYHPD--KNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV-----GSSAASG 80

Query: 74  GVDPF--------ELYSAFFGGSDGLFGGVGEAGGINFNFGN------------KGNFGL 113
           G   +        +++SAF   +D   GG    GG  F F +             G  G 
Sbjct: 81  GGPGYGGGGGDFNDIFSAF---NDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGT 137

Query: 114 DIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQR 173
           D++  L L+ EE   G ++ +++     C  C GTG+K+    ++C  C G G V +  +
Sbjct: 138 DLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGA-TETCPTCHGSGEVRQASK 196

Query: 174 TPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGE 233
           T FG    ++ C  CGG+G+++ D C  C G G  Q + ++KV +P GV +G  + +RG+
Sbjct: 197 TMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQ 256

Query: 234 GNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDL 293
           GN   R    GDL V +     +   R+G ++   ++V Y + +LGT +EV T++G   L
Sbjct: 257 GNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKL 316

Query: 294 RIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSP 353
            IP+G QP   +++   G+  +     RGD    VNV +PK++S  ++ L++E+   KS 
Sbjct: 317 TIPAGTQPETMLRIPGKGIGHLRGSG-RGDQYVRVNVFVPKEVSHQDKELLKELK--KSS 373

Query: 354 GKWHSVSTNSTEAAQRKS--AKVRD 376
                +S N+    + KS   K +D
Sbjct: 374 H----ISPNAHNDKEEKSFFEKAKD 394

Length = 397

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score =  219 bits (559), Expect = 5e-67
 Identities = 123/334 (36%), Positives = 185/334 (55%), Gaps = 11/334 (3%)

Query: 20  YHPDINKSPG---AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGV- 75
           YHPD  K+PG   AEEKFKE + AY+VLSD +KRS YD+FG AG+ G   G   + +G+ 
Sbjct: 33  YHPD--KNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGGFSGEGMS 90

Query: 76  --DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRG 133
             D F ++   FGG  G FGG G  GG       +   G D+R  + L+ +E   G ++ 
Sbjct: 91  MEDIFSMFGDIFGGHGGGFGGFGGFGG--GGSQQRVFRGSDLRVKVKLNLKEISTGVEKK 148

Query: 134 IEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGK 193
            +V  +  C  C GTGA+ +N  ++C  C G G V + Q T  G +   STC  C G+GK
Sbjct: 149 FKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGK 208

Query: 194 IIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVD 253
           II   C++CGG G V  +  + V IP GV+ G  + + G+GN  +   + GDL V +  +
Sbjct: 209 IIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEE 268

Query: 254 EKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVP 313
               + RD  +L   + +    A LG ++EV T++G   ++I +G QPG  ++L+  G+P
Sbjct: 269 PHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVLRLRNKGLP 328

Query: 314 DINNPSVRGDHLFIVNVLIPKDISDPERALVEEI 347
            +N     GD L  V+V IP+ +S  E+  +E++
Sbjct: 329 SVNGYG-TGDLLVNVSVYIPETLSKEEKQTLEKM 361

Length = 386

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score =  217 bits (554), Expect = 3e-66
 Identities = 127/350 (36%), Positives = 199/350 (56%), Gaps = 25/350 (7%)

Query: 20  YHPDINKSPG---AEEKFKEISSAYEVLSDDEKRSVYDRFGE------AGITGEYDGLSN 70
           YHPD  K+PG   AE++FKE+S AYEVLSD +KR  YDR+G+      AG  G   G+ N
Sbjct: 29  YHPD--KNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG-AGMGN 85

Query: 71  TSQGVDPFE-LYSAFFGGS----DGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEE 125
               +  F   +   FGG     +GLFGG+GEA G+          G   +  + LSFEE
Sbjct: 86  MEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQ-GASKKVHITLSFEE 144

Query: 126 SIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTC 185
           +  G ++ + VS +++CD+C G+GA SS  I+ C  C G G V++++    G  S  STC
Sbjct: 145 AAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTC 200

Query: 186 SKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGD 245
            +CGG+G++I D C  C G G ++ KRS+ V IP GV +G  +++ G G+  +  + AGD
Sbjct: 201 PECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGD 260

Query: 246 LFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETV--EGMKDLRIPSGVQPGD 303
           L+V + V+      R G +L  ++ + + +A LG   E+ T+  EG   L IP G+Q G 
Sbjct: 261 LYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGT 320

Query: 304 TVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSP 353
            +K++  G P+++    RGD L  ++V  P+++S+ ++ L+ + A  +  
Sbjct: 321 ILKVRGQGFPNVHGKG-RGDLLVRISVETPQNLSEEQKELLRQFAATEKA 369

Length = 391

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score =  212 bits (541), Expect = 1e-64
 Identities = 115/335 (34%), Positives = 182/335 (54%), Gaps = 26/335 (7%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NK+P AE+KFKE+  AY+ LSD +K++ YD+FG                  DP +
Sbjct: 32  YHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT----------------DPNQ 75

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFG------NKGNFGLDIRYDLHLSFEESIFGGQRG 133
               F GG  G FGG  +   + F  G      N    G D++Y + L F+E++FG +  
Sbjct: 76  ---GFGGGGAGDFGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETE 132

Query: 134 IEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGK 193
           IE+   ETC +C G+GAK     ++C  C G G +   Q TPFG +     C  C G GK
Sbjct: 133 IEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGK 192

Query: 194 IIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVD 253
           II   C  CGG G+V+ ++ + V +P G+ +G  +++ G+G         GDL+V  +V 
Sbjct: 193 IIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVK 252

Query: 254 EKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVP 313
             +   RDG +++ ++ + + +  LG  +EV T+ G   L+IP+G Q G + +L+  GVP
Sbjct: 253 PHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKGVP 312

Query: 314 DINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 348
           +++    +GD    V V+ PK++++ E+ L+ E A
Sbjct: 313 NVHGRG-QGDQHVQVRVVTPKNLTEKEKELMREFA 346

Length = 371

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score =  212 bits (541), Expect = 1e-64
 Identities = 121/335 (36%), Positives = 178/335 (53%), Gaps = 14/335 (4%)

Query: 17  SLLYHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGV 75
           +L YHPD N  +P AE+KFKE + AYEVL D EKR+ YDRFG AG+ G   G    S   
Sbjct: 29  ALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNG-NGGFGGFSSAE 87

Query: 76  DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIE 135
           D F  +S  FG   G F G G   G       +   G D+RY+L +SF ++  G +  + 
Sbjct: 88  DIFSHFSDIFGDLFG-FSGGGSRRG------PRPQAGSDLRYNLTVSFRQAAKGDEVTLR 140

Query: 136 VSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 195
           +    TCD CGG+GA      ++C+ C G G V ++Q    G       C  C G+G++I
Sbjct: 141 IPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ----GFFQIAVPCPVCRGEGRVI 196

Query: 196 IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEK 255
              C +C G+G VQ  R +KV IP GV  G+ +++RGEG         GDL+V + V++ 
Sbjct: 197 THPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDD 256

Query: 256 QGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDI 315
           +   R G +L     + + +A LG  +EV T++    L IP G Q G+  +L+  G+P +
Sbjct: 257 KIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRGKGLPYL 316

Query: 316 NNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 350
            + S +GD L  V+V+ P  ++  +  L+ E   L
Sbjct: 317 GS-SQKGDLLVEVSVVTPTKLTKRQEELLREFEAL 350

Length = 373

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score =  209 bits (535), Expect = 1e-63
 Identities = 117/343 (34%), Positives = 165/343 (48%), Gaps = 31/343 (9%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE---------AGITGEYDGLSN 70
            HPD+N    A+EKFKEIS AYEVLSD EKR + D  G+          G  G + GL  
Sbjct: 31  LHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFGGGFGGLG- 89

Query: 71  TSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGG 130
                D FE   AFFGG     G  G            G+  L +R  L L  EE   G 
Sbjct: 90  -----DVFE---AFFGGGAASRGPRGRV--------RPGSDSL-LRMRLDL--EECATGV 130

Query: 131 QRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGG 190
            + + V     CD C G G    +   +C  C GRG V   QR+  G +     C  C G
Sbjct: 131 TKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRG 190

Query: 191 DGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVAL 250
            G++I D C  C G+G V+++R + V IP GV +G  +++  +G        AGDL+V +
Sbjct: 191 VGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEV 250

Query: 251 HVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETV-EGMKDLRIPSGVQPGDTVKLQQ 309
           H        RDG +L   +SV   +A LGT++ VE + +G  ++ IP G QPG  + L+ 
Sbjct: 251 HEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRG 310

Query: 310 MGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKS 352
            G+P + +   RGD    V V++P  +   +  L+ E+  L+ 
Sbjct: 311 RGMPHLRS-GGRGDLHAHVEVVVPTRLDHEDIELLRELKALRG 352

Length = 378

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score =  204 bits (521), Expect = 1e-61
 Identities = 118/334 (35%), Positives = 178/334 (53%), Gaps = 15/334 (4%)

Query: 20  YHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPF 78
           YHPD NK +  +EEKFKE + AYE+L D +KR  YD+FG+AG+     G      G   +
Sbjct: 32  YHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGF-----GQGAY 86

Query: 79  ELYSAFFGGSDGLFG---GVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIE 135
             +S  FG    +FG   G G  GG      +    G D+RY+L +S E++  G +  IE
Sbjct: 87  TDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIE 146

Query: 136 VSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 195
           +   E+C  C G+GA   +   +C  C G G + +TQ    G  S  +TC  C G G +I
Sbjct: 147 IPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ----GFFSVATTCPTCRGKGTVI 202

Query: 196 IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEK 255
            + C+ CGG G  + +R++ + IPPGV  G+ +++ GEG         GDL+V  H+ + 
Sbjct: 203 SNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKH 262

Query: 256 QGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPD 314
           +   R G +L     +   +AILG  +EV T++G K  ++IP G + G   +L+  G+P 
Sbjct: 263 ELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPY 322

Query: 315 INNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 348
           +     +GD   IV + IPK I+  +R L+EE A
Sbjct: 323 LGAYG-KGDQHVIVKIEIPKKITRRQRELIEEFA 355

Length = 372

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score =  193 bits (492), Expect = 1e-57
 Identities = 114/340 (33%), Positives = 178/340 (52%), Gaps = 29/340 (8%)

Query: 20  YHPDINKSPG----AEEKFKEISSAYEVLSDDEKRSVYDR-----FGEAGITGEYDGLSN 70
           +HPD++  PG    AEEKFKEIS AYEVLSD +KR  YD+     FG  G    +D  ++
Sbjct: 31  WHPDLH--PGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFNWDNFTH 88

Query: 71  TSQGVDPFELYSAFFGGS--DGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIF 128
            S   D  ++++  FGG+     F G G       N  +  N  LDI  +L +S E++ +
Sbjct: 89  FS---DINDIFNQIFGGNFGSDFFSGFG-------NQQSTRNIDLDIYTNLDISLEDAYY 138

Query: 129 GGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC 188
           G ++ I+      C  C GTGAK+   I +C  C G G     +   F  +  V+TC  C
Sbjct: 139 GTEKRIKYRRNAMCPDCSGTGAKNGKLI-TCPTCHGTGQQRIVRGQGFFRMVTVTTCRTC 197

Query: 189 GGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGN-FDRRRSLAGDLF 247
           GG G+I  + C RC G G V     + V IP G ++   ++++G+G  +  R    GDL+
Sbjct: 198 GGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQSYGGR---TGDLY 254

Query: 248 VALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKL 307
           V L V+    I R   +L+    +++ +A LG  +E++      +L+IP G QPG+ +K+
Sbjct: 255 VVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKI 314

Query: 308 QQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEI 347
           +  G+P +N     GD L  +NV +PK ++  ++ L+ E 
Sbjct: 315 KGAGMPHLNGHG-SGDLLVRINVEVPKRLTSKQKELIREF 353

Length = 365

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score =  193 bits (492), Expect = 2e-57
 Identities = 114/332 (34%), Positives = 180/332 (54%), Gaps = 17/332 (5%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD---GLSNTSQGVD 76
           YHPD   +  AE+KFKEI++AY+VL D++KR+ YDRFG      +     G ++     D
Sbjct: 31  YHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGGNHGGFHPD 90

Query: 77  PFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEV 136
             +++  FF  SD  F G    G       +    G D++Y+L ++ EE+  G ++ I  
Sbjct: 91  INDIFGDFF--SD--FMG----GSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISF 142

Query: 137 SCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 196
           S    CD+C G+G++    + +C AC G G      R   G  +    C KC G+G+II 
Sbjct: 143 SSEVKCDTCHGSGSEKGETVTTCDACSGVG----ATRMQQGFFTIEQACHKCQGNGQIIK 198

Query: 197 DHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ 256
           + C++C G G    +R++ V IP GV NG  ++  GEG    R   +GDL+V + +    
Sbjct: 199 NPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHD 258

Query: 257 GIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPDI 315
               DG NL  K+ + +  A LG  +EV  +EG K +L IP+G Q GD ++L+  G+  +
Sbjct: 259 IYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKM 318

Query: 316 NNPSVRGDHLFIVNVLIPKDISDPERALVEEI 347
            + ++RGD L  ++V +PK++S  +R L+EE 
Sbjct: 319 RS-TIRGDMLTHIHVEVPKNLSKRQRELLEEF 349

Length = 372

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score =  192 bits (490), Expect = 3e-57
 Identities = 105/341 (30%), Positives = 177/341 (51%), Gaps = 27/341 (7%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NKSP A +K  EI+ A +VL D +KR  YD+FG A     +DG S  S       
Sbjct: 32  YHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAA----FDGSSGFSSN----- 82

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFN------FG-NKGNF-----GLDIRYDLHLSFEESI 127
                FG  + LF  +G +G  +F       FG NK ++     G  +  D++L+F+E +
Sbjct: 83  -----FGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELL 137

Query: 128 FGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSK 187
           FG  + IE+     C  C G+GA+S++ I  C  C G G VL  +   F    Q + C+ 
Sbjct: 138 FGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNV 197

Query: 188 CGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLF 247
           C G GKII + C+ C G G+   ++ ++V IP G+     +++  +G+      + GDL 
Sbjct: 198 CNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLI 257

Query: 248 VALHVDEKQGIHRDGLN-LFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVK 306
           + +++ E +       N +    ++ Y +AILG  + ++T++G    ++P  +   + + 
Sbjct: 258 IDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNELII 317

Query: 307 LQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEI 347
           +   G+    N   RGD +  VN+++PK++S  E+ L+E+I
Sbjct: 318 INNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQI 358

Length = 372

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score =  190 bits (484), Expect = 6e-56
 Identities = 126/341 (36%), Positives = 170/341 (49%), Gaps = 25/341 (7%)

Query: 20  YHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDR----FGEAGITGEYDGLSNTSQG 74
           YHPD NK    AEE+FKEIS AY+VLSD++KR  YD     FG  G      G      G
Sbjct: 37  YHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFR---PGPGGGGGG 93

Query: 75  VDPFELYSAFFGGSDGLFGGVGEAGGINFNFG---NKGNF------GLDIRYDLHLSFEE 125
              F+L   F GG+ G  GG G  GG+   FG   N+G        G D+  ++ LSF E
Sbjct: 94  GFNFDLGDLFGGGAQG-GGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTE 152

Query: 126 SIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTC 185
           +I G    + ++    C +C GTGAK+    + C  C G G V +      G  S    C
Sbjct: 153 AIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPC 208

Query: 186 SKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGD 245
             C G G I  D C  C G+G  +S R+M+V IP GVS+G  +++RG+G    R   AGD
Sbjct: 209 PDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGD 268

Query: 246 LFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDT 304
           L+V +HVD      R G NL   + V + EA LG  + V T+ G    +++P G   G  
Sbjct: 269 LYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRV 328

Query: 305 VKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVE 345
           ++++  G         RGD L  V V +PKD+S   R  +E
Sbjct: 329 LRVRGKGAV--RKDGTRGDLLVTVEVAVPKDLSGKAREALE 367

Length = 389

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score =  186 bits (474), Expect = 8e-55
 Identities = 106/334 (31%), Positives = 164/334 (49%), Gaps = 16/334 (4%)

Query: 17  SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVD 76
           +L YHPD NK  GA EKF +I+ AY VLSD EKR+ YDRFG A   G   G      G D
Sbjct: 27  ALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFGGMGFD 86

Query: 77  PFELYSAFFGGSDGLFGGVGEAGGINFNFGNKG-NFGLDIRYDLHLSFEESIFGGQRGIE 135
           P +++         LFGG G  GG     G +G   G D+  +  ++ E++  G +  +E
Sbjct: 87  PMDIFEQ-------LFGGAGFGGG----RGRRGPARGDDLETEARITLEQARAGEEVEVE 135

Query: 136 VSCFETCDSCGGTGAK-SSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI 194
           V     C+ C G+  +      ++C  C G G V    RT FG++     C  C G+G+I
Sbjct: 136 VDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQI 195

Query: 195 IIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDE 254
           I D C  C G G      ++KV +P G+  G  +++ G GN        GDL+V + ++ 
Sbjct: 196 ITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGN--EGPGGNGDLYVHIEMEP 253

Query: 255 KQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPD 314
              + R+  +L  +  + + +A LG  + V T++G + + +  G Q GD  +L+  G+P 
Sbjct: 254 HPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQGMPR 313

Query: 315 INNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 348
           +      GD +    + +PK +S   R  +E  A
Sbjct: 314 LQGAGT-GDLIVEYEIAVPKQLSPEAREALEAYA 346

Length = 371

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score =  168 bits (427), Expect = 5e-48
 Identities = 97/338 (28%), Positives = 175/338 (51%), Gaps = 26/338 (7%)

Query: 20  YHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPF 78
           YHPD NK +  AE  FKE + AYEVL DD KR+ YDRFG               +G   F
Sbjct: 31  YHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF-----------EGGGGF 79

Query: 79  ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGN-------FGLDIRYDLHLSFEESIFGGQ 131
           E +S  F G   +F   G+    +F  GN+G         G D+ Y + +S E++  G +
Sbjct: 80  EGFSGGFSGFSDIFEDFGDIFD-SFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYK 138

Query: 132 RGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 191
             I ++    C+SC G  ++       C  C G G V++      G     +TC KC G+
Sbjct: 139 NNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGG----GFFRVTTTCPKCYGN 194

Query: 192 GKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALH 251
           GKII + C+ C G G ++ K ++++ IP G+ +   +++RG+G+ +      GDL++ + 
Sbjct: 195 GKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKIL 254

Query: 252 VDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQM 310
           +   +   R+G +L++ + + +T+A LG  ++++T+   K  ++IP G +  + + ++  
Sbjct: 255 IKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNE 314

Query: 311 GVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 348
           G+P ++     G+ + I+ +  PK+++     L+E ++
Sbjct: 315 GMPILHTEKF-GNLILIIKIKTPKNLNSNAIKLLENLS 351

Length = 365

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score =  169 bits (429), Expect = 6e-48
 Identities = 104/337 (30%), Positives = 158/337 (46%), Gaps = 25/337 (7%)

Query: 21  HPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRF-----------GEAGITGEYDGL 68
           HPD N   P AEE+FK +S A++VLSD  KR  YD                   G + G 
Sbjct: 38  HPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRRFDGGGGFGGF 97

Query: 69  SNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFG------NKGNFGLDIRYDLHLS 122
                G + F L   F     G  GG+G+  G  FN G      ++   G D+  +  L 
Sbjct: 98  GTGGDGAE-FNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLD 156

Query: 123 FEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQV 182
           F E+  G    + ++    C +C G+GA+     + C  C G  GV+   +  FG     
Sbjct: 157 FVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNG-SGVISRNQGAFGF---S 212

Query: 183 STCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSL 242
             C+ C G G II D C  C G G     R++ V IPPGV +G  +++ G+G    R + 
Sbjct: 213 EPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAP 272

Query: 243 AGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPG 302
           +GDL+V +HV   +   RDG +L   + V +TE  LG+++ V T++G   +++P+G   G
Sbjct: 273 SGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADG 332

Query: 303 DTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDP 339
             ++++  GVP        GD L  V V +P ++   
Sbjct: 333 RILRVRGRGVP--KRSGGAGDLLVTVKVAVPPNLDGA 367

Length = 392

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score =  163 bits (414), Expect = 4e-46
 Identities = 110/333 (33%), Positives = 176/333 (52%), Gaps = 20/333 (6%)

Query: 17  SLLYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGV 75
           +L YHPD N     AEEKFK I+ AY VLSD++KR++YDR+G+ G+       S+ S   
Sbjct: 28  ALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQSDFS--- 84

Query: 76  DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIE 135
           D FE   +FF  + G FG  G           K +   D    + LSF+E++FG ++ I+
Sbjct: 85  DFFEDLGSFFEDAFG-FGARGSK-------RQKSSIAPDYLQTIELSFKEAVFGCKKTIK 136

Query: 136 VSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 195
           V     C+SC GTGAK    +++CK C G+G V   Q    G +S   TC  C G GKII
Sbjct: 137 VQYQSVCESCDGTGAK-DKALETCKQCNGQGQVFMRQ----GFMSFAQTCGACQGKGKII 191

Query: 196 IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEK 255
              C+ C G   +     +  +IP G+ +   M ++ +GN +  +   GDL++   V E 
Sbjct: 192 KTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGN-EYEKGKRGDLYLEARVKED 250

Query: 256 QGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPD 314
           +   R+G +LF +  V +T   LG +++V +++G + +L+IP   +   T   +  GV  
Sbjct: 251 EHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKH 310

Query: 315 INNPSVRGDHLFIVNVLIPKDISDPERALVEEI 347
             + S RG  +  + V+ PK ++  ++ L+E++
Sbjct: 311 PES-SYRGSLIVELQVIYPKSLNKEQQELLEKL 342

Length = 369

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score =  151 bits (382), Expect = 5e-41
 Identities = 100/328 (30%), Positives = 154/328 (46%), Gaps = 40/328 (12%)

Query: 17  SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVD 76
           ++ +HPD     G  EKFKEIS AYEVLSD EKR +YD +GE       +GL    Q  D
Sbjct: 53  AIKHHPD---KGGDPEKFKEISRAYEVLSDPEKRKIYDEYGE-------EGLEGGEQPAD 102

Query: 77  PFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEV 136
             +L+   FGG         + GG           G DI   L ++ E+   G  R + +
Sbjct: 103 ASDLFDLIFGGGR-------KPGG--------KKRGEDIVSHLKVTLEQIYNGAMRKLAI 147

Query: 137 SCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFG-LISQV-STCSKCGGDGKI 194
           +    C +C G G    +    CK C G+G  ++ Q    G +I Q  STC+ C G GKI
Sbjct: 148 NKDVICANCEGHGG-PKDAFVDCKLCNGQG--IRVQIRQMGSMIHQTQSTCNSCNGQGKI 204

Query: 195 I--IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHV 252
           I     C+ C G G  ++++ ++V I  GV N   +   GE + ++   + G++   L+ 
Sbjct: 205 IPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEAD-EKPNEIPGNVVFILNE 263

Query: 253 DEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRI---PSGV-QPGDTVKLQ 308
                  R+G +LF    +   EA+ G    +  ++G K L +   P  V +PGD   + 
Sbjct: 264 KPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRK-LLVNTPPGEVVKPGDIKVIN 322

Query: 309 QMGVPDINNPSVRGDHLFIV-NVLIPKD 335
             G+P   +P  +G +L++   V+ P D
Sbjct: 323 NEGMPTYKSPFKKG-NLYVTFEVIFPVD 349

Length = 421

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score =  130 bits (329), Expect = 4e-36
 Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 1/129 (0%)

Query: 208 VQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFS 267
           V+ K+++ V IP GV +G  +++RGEG+        GDL+V + V       RDG +L+ 
Sbjct: 31  VREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYC 90

Query: 268 KISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFI 327
           ++ +  TEA+LG  +EV T+ G   L+IP G QPG  ++L+  G+P +     RGD    
Sbjct: 91  EVPISLTEALLGGEIEVPTLGGKVKLKIPPGTQPGTVLRLKGKGMPRL-RGGGRGDLYVE 149

Query: 328 VNVLIPKDI 336
           V V  PK +
Sbjct: 150 VKVEFPKKL 158

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score =  106 bits (266), Expect = 6e-26
 Identities = 90/329 (27%), Positives = 139/329 (42%), Gaps = 76/329 (23%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD+NKSPGAEEKFKEI+ AY VLSD EKR +YD +G    +  +       QG  P  
Sbjct: 32  YHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGW-------QGPPP-- 82

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
                           G  GG +F+  N G+F           F + +FGG+ G     F
Sbjct: 83  ----------------GPPGGGDFSGFNVGDFS---------DFFQQLFGGRGG--FGGF 115

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
                  G  A+             +G  L+ +  P  L          GG+  + +   
Sbjct: 116 GDLFGSVGRRAR-------------KGRDLEAE-LPLTLEEAYR-----GGEKVVEVA-- 154

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
                         + V IPPGV  G  +++ G+G         GDL++ + +       
Sbjct: 155 -----------GERLSVRIPPGVREGQVIRLAGKGR------QGGDLYLVVRLLPHPVFR 197

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
            +G +L++ + V    A++G  + V T++G  ++ IP   Q G  ++L+  G P    P+
Sbjct: 198 LEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAGRKLRLKGKGWP--RGPA 255

Query: 320 VRGDHLFIVNVLIPKDISDPERALVEEIA 348
            RGD    V + IP   +  E  L +++A
Sbjct: 256 GRGDQYAEVRITIPTRPTPEEERLYKQLA 284

Length = 291

>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40

 Score = 85.4 bits (212), Expect = 8e-21
 Identities = 29/65 (44%), Positives = 36/65 (55%)

Query: 142 CDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRR 201
           C +C G+GAK     ++C  C G G V + Q T FG     +TC  CGG GKII D C +
Sbjct: 1   CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIKDPCPK 60

Query: 202 CGGNG 206
           C G G
Sbjct: 61  CKGKG 65

Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding. Length = 65

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 83.8 bits (208), Expect = 5e-20
 Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 1/81 (1%)

Query: 264 NLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPDINNPSVRG 322
           +L+  + +   EA+LG ++EV T++G K  ++IP+G QPGD ++++  G+P     + RG
Sbjct: 1   DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRG 60

Query: 323 DHLFIVNVLIPKDISDPERAL 343
           D +  +NV IPK +S  ++ L
Sbjct: 61  DLIVTLNVKIPKKLSSEQKEL 81

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain

 Score = 76.7 bits (189), Expect = 9e-18
 Identities = 33/65 (50%), Positives = 38/65 (58%)

Query: 142 CDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRR 201
           C  C GTGAK     ++C  C G G V+K QRTP G+     TC KCGG GKII D C+ 
Sbjct: 1   CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKV 60

Query: 202 CGGNG 206
           C G G
Sbjct: 61  CKGKG 65

The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 72.9 bits (180), Expect = 2e-16
 Identities = 26/39 (66%), Positives = 30/39 (76%), Gaps = 1/39 (2%)

Query: 17 SLLYHPDINKSPGA-EEKFKEISSAYEVLSDDEKRSVYD 54
          +L YHPD N    A EEKFKEI+ AYEVLSD EKR++YD
Sbjct: 25 ALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRAIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 2/35 (5%)

Query: 17 SLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEK 49
          +L YHPD N      AEEKFKEI+ AYEVLSD EK
Sbjct: 26 ALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 13/76 (17%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYD---------RFGEAGITGEYDGLSN 70
           YHPD++K P AE +FKE++ A+EVLSD+++R+ YD         +F         DG S 
Sbjct: 32  YHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQ--FQHGDGQSF 89

Query: 71  TSQGVDPFELYSAFFG 86
            ++  D  +++S+ FG
Sbjct: 90  NAEDFD--DIFSSIFG 103

Length = 306

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 22/31 (70%), Positives = 24/31 (77%), Gaps = 1/31 (3%)

Query: 17 SLLYHPDINKS-PGAEEKFKEISSAYEVLSD 46
          +L YHPD N   P AEEKFKEI+ AYEVLSD
Sbjct: 25 ALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 62.1 bits (150), Expect = 3e-10
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD 66
          YHPD NK+P A   F EI+ A +VLS+ +KR+ YD++G  G+  E D
Sbjct: 30 YHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVDREDD 76

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 59.5 bits (143), Expect = 5e-10
 Identities = 45/251 (17%), Positives = 69/251 (27%), Gaps = 56/251 (22%)

Query: 17  SLLYHPDINKSPG--AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQG 74
           +L YHPD N      AEEKFKEI+ AYE+LSD E+R+ YD+ G                 
Sbjct: 31  ALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIGA---------------- 74

Query: 75  VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGI 134
                  + F G S          G +                       E   G +   
Sbjct: 75  ------DNYFPGKSYRESAAFPIEGSLQLT-----------------GLYEEWRGKRNKT 111

Query: 135 EVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI 194
           E     +       G        S  A         + R      +      +     K 
Sbjct: 112 E--RKASLADLLSRGLSGLAAALSLFA-DEAALRSGSLRRRDLAANLADNFEEALAGVKK 168

Query: 195 IIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDE 254
            +               +++K  I  G   G  ++++G       R   G   +      
Sbjct: 169 AV----------ARLLGKALKSTIKAGALEGKALRLKGLL--KSARGALGKARLKELSKR 216

Query: 255 KQGIHRDGLNL 265
                 +G + 
Sbjct: 217 HPPFALEGDDK 227

Length = 237

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 3/146 (2%)

Query: 207 EVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLF 266
           E +  +++ V IP GV NG  ++++G+G         GDL++ +H+         G +L 
Sbjct: 153 EQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLE 212

Query: 267 SKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLF 326
             + +   EA LG  + V T++    L IP G Q G  ++++  G   + +    GD   
Sbjct: 213 IVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKG---LVSKKQTGDLYA 269

Query: 327 IVNVLIPKDISDPERALVEEIAFLKS 352
           ++ +++P    +   AL +++A  +S
Sbjct: 270 VLKIVMPPKPDEKTAALWQQLADAQS 295

Length = 306

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 15/81 (18%)

Query: 140 ETCDSCGGTGAKSSNCI--QSCKACWGRG--------GVLKTQRTPF-GLISQVSTCSKC 188
           + C  CGG G      +  + C  C G G        GV    R       S    C KC
Sbjct: 3   KKCPECGGKGKI---VVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKC 59

Query: 189 GGDGKI-IIDHCRRCGGNGEV 208
            G G + + D C  CGG G+V
Sbjct: 60  RGKGTVTVYDTCPECGGTGKV 80

Length = 715

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 212 RSMKVVIPPGVSNGATMQIRGEGNFDRRRSLA-GDLFVALHVD 253
           R +K+ IP G   G  ++I+G+G    +     GDL V L+V 
Sbjct: 27  RKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRGDLIVTLNVK 69

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 181 QVSTCSKCGGDGKIIIDH--CRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFD 237
            +  C +CGG GKI++    C  C G G            P GV+N +   +    +F+
Sbjct: 1   MIKKCPECGGKGKIVVGEEECPVCHGTGFSDD------FDPKGVANLSRETVDLFASFE 53

Length = 715

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score = 37.8 bits (89), Expect = 0.004
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 264 NLFSKISVDYTEAILGTSMEVE------TVEGMKDL--RIPSGVQPGDTVKLQQMGVPDI 315
           +L   + +   EA  G   E++       V   K L  +IP+GV  G  ++L+  G    
Sbjct: 2   DLRYDLELTLEEAYFGKEKEIKIPRKVTRVREKKTLTVKIPAGVDDGQRLRLRGEGDAGP 61

Query: 316 NNPSVRGDHLFIVNV 330
           N     GD   ++ V
Sbjct: 62  NG-GPPGDLYVVIRV 75

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	461
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14276	380	chaperone protein DnaJ; Provisional	100.0
PRK14278	378	chaperone protein DnaJ; Provisional	100.0
PRK14280	376	chaperone protein DnaJ; Provisional	100.0
PRK14277	386	chaperone protein DnaJ; Provisional	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14286	372	chaperone protein DnaJ; Provisional	100.0
PRK14284	391	chaperone protein DnaJ; Provisional	100.0
PRK14297	380	chaperone protein DnaJ; Provisional	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14281	397	chaperone protein DnaJ; Provisional	100.0
PRK14279	392	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PRK14285	365	chaperone protein DnaJ; Provisional	100.0
PRK14301	373	chaperone protein DnaJ; Provisional	100.0
PRK14295	389	chaperone protein DnaJ; Provisional	100.0
PRK14294	366	chaperone protein DnaJ; Provisional	100.0
PRK10767	371	chaperone protein DnaJ; Provisional	100.0
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	100.0
PRK14289	386	chaperone protein DnaJ; Provisional	100.0
PRK14300	372	chaperone protein DnaJ; Provisional	100.0
PRK14291	382	chaperone protein DnaJ; Provisional	100.0
PRK14283	378	chaperone protein DnaJ; Provisional	100.0
PRK14292	371	chaperone protein DnaJ; Provisional	100.0
PRK14293	374	chaperone protein DnaJ; Provisional	100.0
PRK14290	365	chaperone protein DnaJ; Provisional	100.0
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	100.0
PRK14299	291	chaperone protein DnaJ; Provisional	100.0
PRK10266	306	curved DNA-binding protein CbpA; Provisional	100.0
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	100.0
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	100.0
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.97
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.88
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	99.85
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.67
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.66
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.66
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.64
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.61
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.58
PHA03102	153	Small T antigen; Reviewed	99.55
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.52
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.52
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.5
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.49
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.49
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.49
PRK14282	369	chaperone protein DnaJ; Provisional	99.42
PRK14290	365	chaperone protein DnaJ; Provisional	99.41
PRK14298	377	chaperone protein DnaJ; Provisional	99.38
PRK14294	366	chaperone protein DnaJ; Provisional	99.37
PRK10767	371	chaperone protein DnaJ; Provisional	99.34
PRK14285	365	chaperone protein DnaJ; Provisional	99.34
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.32
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.32
PRK14300	372	chaperone protein DnaJ; Provisional	99.3
PRK14301	373	chaperone protein DnaJ; Provisional	99.3
PRK14284	391	chaperone protein DnaJ; Provisional	99.29
PRK14287	371	chaperone protein DnaJ; Provisional	99.29
PRK14278	378	chaperone protein DnaJ; Provisional	99.29
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.28
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.27
PRK14276	380	chaperone protein DnaJ; Provisional	99.26
PRK14288	369	chaperone protein DnaJ; Provisional	99.25
PRK14281	397	chaperone protein DnaJ; Provisional	99.25
PRK14286	372	chaperone protein DnaJ; Provisional	99.24
PRK14293	374	chaperone protein DnaJ; Provisional	99.24
PRK14280	376	chaperone protein DnaJ; Provisional	99.24
PRK14279	392	chaperone protein DnaJ; Provisional	99.24
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.22
PRK14297	380	chaperone protein DnaJ; Provisional	99.21
PRK14296	372	chaperone protein DnaJ; Provisional	99.2
PRK14289	386	chaperone protein DnaJ; Provisional	99.2
PRK14277	386	chaperone protein DnaJ; Provisional	99.2
PRK14292	371	chaperone protein DnaJ; Provisional	99.18
PRK14295	389	chaperone protein DnaJ; Provisional	99.18
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.17
PRK14283	378	chaperone protein DnaJ; Provisional	99.17
PRK05014	171	hscB co-chaperone HscB; Provisional	99.15
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.14
PRK00294	173	hscB co-chaperone HscB; Provisional	99.13
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.13
PRK01356	166	hscB co-chaperone HscB; Provisional	99.12
PRK14291	382	chaperone protein DnaJ; Provisional	99.12
PRK03578	176	hscB co-chaperone HscB; Provisional	99.08
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	98.93
PHA02624	647	large T antigen; Provisional	98.89
PTZ00100	116	DnaJ chaperone protein; Provisional	98.84
PRK14299	291	chaperone protein DnaJ; Provisional	98.83
PLN03165	111	chaperone protein dnaJ-related; Provisional	98.8
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	98.76
PRK10266	306	curved DNA-binding protein CbpA; Provisional	98.61
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.47
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.47
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.37
PRK01773	173	hscB co-chaperone HscB; Provisional	98.36
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.21
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	98.15
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.53
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.45
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	97.39
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	97.35
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.84
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.56
KOG2813	406	consensus Predicted molecular chaperone, contains	95.97
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.68
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.59
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	94.8
KOG2813	406	consensus Predicted molecular chaperone, contains	94.7
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	94.32
KOG0724	335	consensus Zuotin and related molecular chaperones	93.87
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	87.31
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	82.63
TIGR00340	163	zpr1_rel ZPR1-related zinc finger protein. A model	80.98

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-97  Score=749.39  Aligned_cols=334  Identities=40%  Similarity=0.671  Sum_probs=307.1

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCC-CCCCCCCCccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL-SNTSQGVDPFELY   81 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~-~~~~~~~d~~d~F   81 (461)
                      ||+++||+|||+||+|||||+|| +++|++|||||+|||||||||+||++||+||++++++++.++ ++++.+.|+.|||
T Consensus        16 As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg~g~~~fgg~~~DIF   95 (371)
T COG0484          16 ASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGFGFGGFGGDFGDIF   95 (371)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCCCCcCCCCCCHHHHH
Confidence            79999999999999999999999 899999999999999999999999999999999997433222 1222222688999


Q ss_pred             ccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCC
Q 012541           82 SAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKA  161 (461)
Q Consensus        82 ~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~  161 (461)
                      ++|||+.  +++         ..+++++.+|.|+.+.|+|||+|||+|++++|.+.+...|++|+|+|++.++.+.+|++
T Consensus        96 ~~~FgGg--~~~---------~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~t  164 (371)
T COG0484          96 EDFFGGG--GGG---------RRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPT  164 (371)
T ss_pred             HHhhcCC--Ccc---------cCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCC
Confidence            9999631  111         11234478999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCC
Q 012541          162 CWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRS  241 (461)
Q Consensus       162 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~  241 (461)
                      |+|+|++...+++  |.|+++++|+.|+|+|++|+++|..|+|.|++...++++|+||+|+.+|++|++.|+|+++.+++
T Consensus       165 C~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Gg  242 (371)
T COG0484         165 CNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGG  242 (371)
T ss_pred             CCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCC
Confidence            9999999988888  88999999999999999999999999999999999999999999999999999999999999899


Q ss_pred             CCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCC
Q 012541          242 LAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVR  321 (461)
Q Consensus       242 ~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~r  321 (461)
                      ++|||||+|.|++|+.|+|+|+|||++++|++.+|+||++|+||||||.++|+||+|||+|++++|+|+|||..++ ..+
T Consensus       243 p~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl~gkG~p~~~~-~~~  321 (371)
T COG0484         243 PAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRS-GGR  321 (371)
T ss_pred             CCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEEcCCCccccCC-CCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998765 467


Q ss_pred             ccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          322 GDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       322 GDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      |||||+++|++|++|+.+|++||++|++..
T Consensus       322 GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~  351 (371)
T COG0484         322 GDLYVRVKVETPKNLSDEQKELLEEFAKSL  351 (371)
T ss_pred             CCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999976

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.6e-84  Score=666.72  Aligned_cols=335  Identities=29%  Similarity=0.551  Sum_probs=295.3

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccccccccccc-CCCCCC---------
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD-GLSNTS---------   72 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~-~~~~~~---------   72 (461)
                      -+++++||+|||+||+|||||+|++++|+++|++|++||||||||+||++||+||++++.++.+ ++++++         
T Consensus        15 ~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~~~~~~~~~~~~~   94 (372)
T PRK14296         15 TASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSNFGDFEDLFSNMG   94 (372)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcCCCcccccccccc
Confidence            4789999999999999999999998899999999999999999999999999999987753211 001000         


Q ss_pred             -CCC-CcccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCc
Q 012541           73 -QGV-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGA  150 (461)
Q Consensus        73 -~~~-d~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~  150 (461)
                       .++ ++.|+|++|||+.       +   +    ...++.++.|+++.|.|||+|+|+|++++|.+.+.+.|++|+|+|.
T Consensus        95 ~~g~~~f~d~f~~~fggg-------~---~----~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~  160 (372)
T PRK14296         95 SSGFSSFTNIFSDFFGSN-------K---S----DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGA  160 (372)
T ss_pred             ccccccchhhhhhhcCCC-------c---c----CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCcc
Confidence             011 2235666666421       0   0    1122457899999999999999999999999999999999999999


Q ss_pred             ccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEE
Q 012541          151 KSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI  230 (461)
Q Consensus       151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l  230 (461)
                      ..+..+.+|+.|+|+|.++..++.++.+++++++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+++|++|+|
T Consensus       161 ~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~  240 (372)
T PRK14296        161 ESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKL  240 (372)
T ss_pred             CCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEE
Confidence            99999999999999999988887776666677899999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCccEEEEEEEEeccccccc-ccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEcc
Q 012541          231 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRD-GLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQ  309 (461)
Q Consensus       231 ~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~-G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g  309 (461)
                      +|+|+++.+++.+|||||+|++++|+.|+|+ |+|||++++|||.|||||+++.|+||||++.|+||++++||++++|+|
T Consensus       241 ~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g~~~ri~G  320 (372)
T PRK14296        241 SQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNELIIINN  320 (372)
T ss_pred             eccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCCcEEEEcC
Confidence            9999998777889999999999999999995 899999999999999999999999999998999999999999999999


Q ss_pred             CCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          310 MGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       310 ~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      +|||...+++.+|||||+|+|+||+.||++|+++|++|++..
T Consensus       321 kGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~~  362 (372)
T PRK14296        321 KGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQT  362 (372)
T ss_pred             CCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999966555678999999999999999999999999999863

>PRK14287 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.1e-82  Score=650.57  Aligned_cols=334  Identities=33%  Similarity=0.676  Sum_probs=300.5

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCC-CCccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQG-VDPFELY   81 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~-~d~~d~F   81 (461)
                      -++.++||+|||+||++||||+|++++|+++|++|++||||||||+||++||+||++++.+++++++  +.+ .++.|+|
T Consensus        15 ~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~--~~~f~~~~d~f   92 (371)
T PRK14287         15 NASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGG--AGDFGGFSDIF   92 (371)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCC--CccccchHHHH
Confidence            3688999999999999999999998889999999999999999999999999999988764321111  111 1345889


Q ss_pred             ccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCC
Q 012541           82 SAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKA  161 (461)
Q Consensus        82 ~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~  161 (461)
                      ++|||+. +  +    ..     ....+.++.|+++.|.|||+|+|+|++++|.+.+.+.|+.|+|+|......+.+|+.
T Consensus        93 ~~~fgg~-~--~----~~-----~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~  160 (371)
T PRK14287         93 DMFFGGG-G--G----RR-----NPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSH  160 (371)
T ss_pred             Hhhhccc-c--C----CC-----CCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCC
Confidence            9998641 0  0    00     011235789999999999999999999999999999999999999998888999999


Q ss_pred             cCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCC
Q 012541          162 CWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRS  241 (461)
Q Consensus       162 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~  241 (461)
                      |+|+|+++..+++++|++++.++|+.|+|+|+++...|..|+|.+++.+.++++|.||+|+.+|++|+|+|+|+++..++
T Consensus       161 C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~  240 (371)
T PRK14287        161 CGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGG  240 (371)
T ss_pred             CCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCC
Confidence            99999999999999999999999999999999999999999999999989999999999999999999999999987677


Q ss_pred             CCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCC
Q 012541          242 LAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVR  321 (461)
Q Consensus       242 ~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~r  321 (461)
                      .+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|+||++.|+||+++++|++++|+|+|||..++ ..+
T Consensus       241 ~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~-~~~  319 (371)
T PRK14287        241 PPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKGVPNVHG-RGQ  319 (371)
T ss_pred             CCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCCCccCCCC-CCC
Confidence            8999999999999999999999999999999999999999999999999899999999999999999999997654 368


Q ss_pred             ccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          322 GDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       322 GDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      |||||+|+|.+|+.|+.+|+++|++|+++.
T Consensus       320 GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~  349 (371)
T PRK14287        320 GDQHVQVRVVTPKNLTEKEKELMREFAGMS  349 (371)
T ss_pred             CCEEEEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence            999999999999999999999999999653

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5e-82  Score=650.84  Aligned_cols=335  Identities=36%  Similarity=0.649  Sum_probs=300.9

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCC-CCCCCC-CCcccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL-SNTSQG-VDPFEL   80 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~-~~~~~~-~d~~d~   80 (461)
                      -++.++|++|||+||++||||+|++++|+++|++|++||||||||+||++||+||+++++++++++ +.++.+ .++.|+
T Consensus        16 ~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~~~~~~~d~   95 (377)
T PRK14298         16 DASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGADFGGFGDI   95 (377)
T ss_pred             CCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccccccCCcCcchhh
Confidence            368899999999999999999999888999999999999999999999999999998876432211 001111 234578


Q ss_pred             cccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCC
Q 012541           81 YSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCK  160 (461)
Q Consensus        81 F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~  160 (461)
                      |++|||+. +     + .      ....+.++.|+++.|.|||+|+|+|+++++.+.+.+.|++|+|+|...+..+.+|+
T Consensus        96 f~~~Fgg~-~-----~-~------~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~  162 (377)
T PRK14298         96 FEMFFGGG-G-----R-R------GRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCP  162 (377)
T ss_pred             hHhhhcCC-C-----c-c------CCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCC
Confidence            88888641 0     0 0      01224578999999999999999999999999999999999999999999999999


Q ss_pred             CcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCC
Q 012541          161 ACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRR  240 (461)
Q Consensus       161 ~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g  240 (461)
                      .|+|+|+++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||||+++|++|+|+|+|+++..+
T Consensus       163 ~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~  242 (377)
T PRK14298        163 TCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPG  242 (377)
T ss_pred             CCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCC
Confidence            99999999988889999998889999999999999999999999999999999999999999999999999999998777


Q ss_pred             CCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCC
Q 012541          241 SLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSV  320 (461)
Q Consensus       241 ~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~  320 (461)
                      +.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|+++.|+||||++.|+||+++++|++++|+|+|||..+. ..
T Consensus       243 ~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~g~G~p~~~~-~~  321 (377)
T PRK14298        243 APSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKGMPRLHG-HG  321 (377)
T ss_pred             CCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEECCCCCCCCCC-CC
Confidence            88999999999999999999999999999999999999999999999999899999999999999999999997653 46


Q ss_pred             CccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          321 RGDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       321 rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      +|||||+|+|.+|+.|+.+++++|++|+++.
T Consensus       322 ~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~~  352 (377)
T PRK14298        322 KGDQLVKVIVKTPTKLTQEQKELLREFDELS  352 (377)
T ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            8999999999999999999999999999754

>PRK14276 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.2e-81  Score=649.25  Aligned_cols=335  Identities=34%  Similarity=0.662  Sum_probs=300.6

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccC--CCCCC----CC-C
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG--LSNTS----QG-V   75 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~--~~~~~----~~-~   75 (461)
                      -++.++||+|||+||++||||+|++++|+++|++|++||||||||+||++||+||++++++++++  ++.++    .+ .
T Consensus        15 ~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~~~~~~~~~~~~~   94 (380)
T PRK14276         15 DASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAGGFGGFDGSGGFG   94 (380)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCCCCCCcccccccc
Confidence            37899999999999999999999988999999999999999999999999999999988643211  01010    01 2


Q ss_pred             CcccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccc
Q 012541           76 DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNC  155 (461)
Q Consensus        76 d~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~  155 (461)
                      ++.|+|++|||+.    +  +   . .  ....+.++.|+.+.|.|||||+|+|+++++.+.+.+.|++|+|+|+..+..
T Consensus        95 ~~~d~f~~~fgg~----~--~---~-~--~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~  162 (380)
T PRK14276         95 GFEDIFSSFFGGG----G--A---R-R--NPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTS  162 (380)
T ss_pred             chhhHHHHHhCcc----c--c---c-c--CcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCC
Confidence            4557888888641    0  0   0 0  012245789999999999999999999999999999999999999999888


Q ss_pred             cccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEccccc
Q 012541          156 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGN  235 (461)
Q Consensus       156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~  235 (461)
                      +.+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+++|++|+|+|+|+
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~  242 (380)
T PRK14276        163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGE  242 (380)
T ss_pred             CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEecccc
Confidence            99999999999999989999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCC
Q 012541          236 FDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDI  315 (461)
Q Consensus       236 ~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~  315 (461)
                      +...+..+|||||+|+|++|+.|+|+|+||+++++|||.|||+|+++.|+|+||++.|+||+++++|++++|+|+|||..
T Consensus       243 ~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~  322 (380)
T PRK14276        243 AGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKKFRLRGKGAPKL  322 (380)
T ss_pred             CCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCEEEECCCCcCCC
Confidence            98766788999999999999999999999999999999999999999999999998999999999999999999999976


Q ss_pred             CCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541          316 NNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL  350 (461)
Q Consensus       316 ~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~  350 (461)
                      +. ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus       323 ~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~  356 (380)
T PRK14276        323 RG-GGNGDQHVTVNIVTPTKLNDAQKEALKAFAKA  356 (380)
T ss_pred             CC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            53 46899999999999999999999999999864

>PRK14278 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.8e-81  Score=645.90  Aligned_cols=337  Identities=32%  Similarity=0.541  Sum_probs=298.0

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYS   82 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~   82 (461)
                      -+++++|++|||+||+|||||+|++++|+++|++|++||||||||+||++||+||++...++..+++++++..++.|+|+
T Consensus        14 ~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~~~f~~~~d~f~   93 (378)
T PRK14278         14 NASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFGGGFGGLGDVFE   93 (378)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCCcCcCchhHHHH
Confidence            47899999999999999999999988899999999999999999999999999998743321111111101123457899


Q ss_pred             cccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCc
Q 012541           83 AFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKAC  162 (461)
Q Consensus        83 ~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C  162 (461)
                      +|||+.    ++ + .     ..+..+.++.|+++.|.|||+|+|+|+++++.+.+.+.|++|+|+|.+.+..+.+|+.|
T Consensus        94 ~ffgg~----g~-~-~-----~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C  162 (378)
T PRK14278         94 AFFGGG----AA-S-R-----GPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTC  162 (378)
T ss_pred             HHhCCC----CC-C-C-----CCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCc
Confidence            998642    10 0 0     01112457899999999999999999999999999999999999999999889999999


Q ss_pred             CCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCC
Q 012541          163 WGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSL  242 (461)
Q Consensus       163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~  242 (461)
                      +|+|+++..+++.+|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||||+++|++|+|+|+|++++.++.
T Consensus       163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~  242 (378)
T PRK14278        163 GGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGP  242 (378)
T ss_pred             cCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCC
Confidence            99999998888999999999999999999999999999999999999999999999999999999999999999877778


Q ss_pred             CccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeee-CCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCC
Q 012541          243 AGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETV-EGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVR  321 (461)
Q Consensus       243 ~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tl-dG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~r  321 (461)
                      +|||||+|++++|+.|+|+|+||+++++|+|.+||+|+++.|+|| +|.+.|+||+++++|++++|+|+|||..+. ..+
T Consensus       243 ~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~-~~~  321 (378)
T PRK14278        243 AGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLRS-GGR  321 (378)
T ss_pred             CCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCCC-CCC
Confidence            899999999999999999999999999999999999999999999 556799999999999999999999997653 468


Q ss_pred             ccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          322 GDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       322 GDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      |||||+|+|.||+.||++|+++|++|+...
T Consensus       322 GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~~  351 (378)
T PRK14278        322 GDLHAHVEVVVPTRLDHEDIELLRELKALR  351 (378)
T ss_pred             CCEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Confidence            999999999999999999999999999753

>PRK14280 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.2e-81  Score=645.30  Aligned_cols=336  Identities=38%  Similarity=0.694  Sum_probs=301.4

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCC---C-CCCCcc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNT---S-QGVDPF   78 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~---~-~~~d~~   78 (461)
                      -+++++||+|||+||++||||+|++++|+++|++|++||||||||+||++||+||++++++++++++.+   . +++++.
T Consensus        15 ~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~~~~~~~~~   94 (376)
T PRK14280         15 SASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFGGGDFGGGFGFE   94 (376)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCCCCCccccccch
Confidence            478999999999999999999999889999999999999999999999999999998876432211101   0 122556


Q ss_pred             cccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccccccc
Q 012541           79 ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQS  158 (461)
Q Consensus        79 d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~  158 (461)
                      |+|++|||+.  +.+        .  ....+.++.|+.+.|.|||||+|+|++++|.+.+.+.|+.|+|+|...+..+.+
T Consensus        95 d~f~~~fgg~--~~~--------~--~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~  162 (376)
T PRK14280         95 DIFSSFFGGG--GRR--------R--DPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKET  162 (376)
T ss_pred             hhHHHHhCCc--ccc--------C--cccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCcc
Confidence            8899998631  000        0  012245789999999999999999999999999999999999999999888999


Q ss_pred             CCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCC
Q 012541          159 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR  238 (461)
Q Consensus       159 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~  238 (461)
                      |+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+++|++|+|+|+|++..
T Consensus       163 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~  242 (376)
T PRK14280        163 CSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGV  242 (376)
T ss_pred             CCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCC
Confidence            99999999999888999999999899999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCC
Q 012541          239 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP  318 (461)
Q Consensus       239 ~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~  318 (461)
                      .++.+|||||+|+|++|+.|+|+|+||++++.|||.|||+|+++.|+||||++.|+||+++++|++++|+|+|||.... 
T Consensus       243 ~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~-  321 (376)
T PRK14280        243 NGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRLKGKGVPNVRG-  321 (376)
T ss_pred             CCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEEEcCCCCCCCCC-
Confidence            7778999999999999999999999999999999999999999999999998899999999999999999999997643 


Q ss_pred             CCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          319 SVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       319 ~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      ..+|||||+|+|.+|+.||++|+++|++|+++.
T Consensus       322 ~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~~  354 (376)
T PRK14280        322 YGQGDQYVVVRVVTPTKLTDRQKELLREFAELS  354 (376)
T ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            468999999999999999999999999998653

>PRK14277 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.2e-81  Score=643.93  Aligned_cols=339  Identities=36%  Similarity=0.687  Sum_probs=299.4

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccc-cCCC---CC--CCC-
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEY-DGLS---NT--SQG-   74 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~-~~~~---~~--~~~-   74 (461)
                      -++.++||+|||+||++||||+|+ +++|+++|++|++||||||||+||+.||+||+++++.+. ++++   ++  .++ 
T Consensus        16 ~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~g~~~~~~   95 (386)
T PRK14277         16 NATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGF   95 (386)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccCCcCCCCccccCc
Confidence            478899999999999999999998 578999999999999999999999999999998876321 1100   01  000 


Q ss_pred             ----CCcccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCc
Q 012541           75 ----VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGA  150 (461)
Q Consensus        75 ----~d~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~  150 (461)
                          .++.|+|++||++.   |++++   .   .....+.+++|+++.|.|||+|+|+|+++++.+.+.+.|++|+|+|.
T Consensus        96 ~~~~~~~~d~f~~~F~~~---fgg~~---~---~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~  166 (386)
T PRK14277         96 DFDFGGFGDIFEDIFGDF---FGTGR---R---RAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGA  166 (386)
T ss_pred             cccccchhHHHHHhhccc---ccCCC---c---CCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCc
Confidence                12336788888642   32111   0   01122457899999999999999999999999999999999999999


Q ss_pred             ccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEE
Q 012541          151 KSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI  230 (461)
Q Consensus       151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l  230 (461)
                      .....+.+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.+.++|.||+|+++|++|+|
T Consensus       167 ~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~  246 (386)
T PRK14277        167 KPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITL  246 (386)
T ss_pred             CCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEE
Confidence            99888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccC
Q 012541          231 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQM  310 (461)
Q Consensus       231 ~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~  310 (461)
                      +|+|++...++.+|||||+|+|++|+.|+|+|+||+++++|||.|||+|+++.|+||||++.|+||+++++|++++|+|+
T Consensus       247 ~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~ri~g~  326 (386)
T PRK14277        247 RGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGK  326 (386)
T ss_pred             ccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCCEEEECCC
Confidence            99999876667889999999999999999999999999999999999999999999999989999999999999999999


Q ss_pred             CCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          311 GVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       311 G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      |||..+. ..+|||||+|+|.||+.|+++|+++|++|++..
T Consensus       327 G~p~~~~-~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~~  366 (386)
T PRK14277        327 GIPHLRG-RGRGDQIVKVYIEVPKKLTEKQKELLREFEKLS  366 (386)
T ss_pred             CCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhc
Confidence            9997654 368999999999999999999999999999653

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.5e-81  Score=642.44  Aligned_cols=330  Identities=32%  Similarity=0.591  Sum_probs=285.7

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELY   81 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F   81 (461)
                      -+++++||+|||+||+|||||+|+ +++|+++|++|++||||||||+||++||+||++++.++.+ ++.  ...++|+.|
T Consensus        14 ~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~-~~~--~~~~~f~~~   90 (369)
T PRK14288         14 HSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGA-SQS--DFSDFFEDL   90 (369)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCC-Ccc--ccccchhhH
Confidence            479999999999999999999998 5789999999999999999999999999999988763211 001  111334333


Q ss_pred             ccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCC
Q 012541           82 SAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKA  161 (461)
Q Consensus        82 ~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~  161 (461)
                      ++||+..   |++++ .+    ..+.++.+++|+++.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.... .+.+|+.
T Consensus        91 ~~~F~~~---fg~g~-~~----~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~  161 (369)
T PRK14288         91 GSFFEDA---FGFGA-RG----SKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDK-ALETCKQ  161 (369)
T ss_pred             HHHHHhh---cCCCC-cc----cCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCC-CCcCCCC
Confidence            3444321   21101 00    01123457899999999999999999999999999999999999999876 6789999


Q ss_pred             cCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCC
Q 012541          162 CWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRS  241 (461)
Q Consensus       162 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~  241 (461)
                      |+|+|.+...+    |++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+++|++|+|+|+|++.. ++
T Consensus       162 C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~-~~  236 (369)
T PRK14288        162 CNGQGQVFMRQ----GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYE-KG  236 (369)
T ss_pred             CCCCcEEEEEe----ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCC-CC
Confidence            99999876543    77788889999999999999999999999999999999999999999999999999999864 57


Q ss_pred             CCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCCCCCCCC
Q 012541          242 LAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSV  320 (461)
Q Consensus       242 ~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~  320 (461)
                      .+|||||+|+|++|+.|+|+|+|||++++|||.|||||+++.|+||||+ +.|+||++++||++++|+|+|||..+ ...
T Consensus       237 ~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~~~-~~~  315 (369)
T PRK14288        237 KRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKHPE-SSY  315 (369)
T ss_pred             CCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCCCCC-CCC
Confidence            8999999999999999999999999999999999999999999999996 79999999999999999999999765 346


Q ss_pred             CccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541          321 RGDHLFIVNVLIPKDISDPERALVEEIAFL  350 (461)
Q Consensus       321 rGDL~V~f~V~~P~~ls~~q~~lle~l~~~  350 (461)
                      +|||||+|+|++|+.|+++|+++|++|++.
T Consensus       316 ~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~  345 (369)
T PRK14288        316 RGSLIVELQVIYPKSLNKEQQELLEKLHAS  345 (369)
T ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            899999999999999999999999999975

>PRK14286 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6.2e-81  Score=642.06  Aligned_cols=336  Identities=35%  Similarity=0.669  Sum_probs=295.2

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCC-CC-----C
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS-QG-----V   75 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~-~~-----~   75 (461)
                      -++.++||+|||+||+|||||+|+ +++|+++|++|++||||||||+||++||+||+++++++.++.+.++ .+     .
T Consensus        15 ~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~~~~~~~~   94 (372)
T PRK14286         15 SANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFGQGAYTDFSDIFG   94 (372)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCCCCCccccccccc
Confidence            478999999999999999999998 5789999999999999999999999999999988764321111110 11     2


Q ss_pred             CcccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccc
Q 012541           76 DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNC  155 (461)
Q Consensus        76 d~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~  155 (461)
                      ++.|+|++|||+.+++..     .+   .....+.+++|+++.|.|||||+|+|++++|.+.+.+.|++|+|+|...+..
T Consensus        95 ~~~d~f~~ffgg~~~~~~-----~~---~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~  166 (372)
T PRK14286         95 DFGDIFGDFFGGGRGGGS-----GG---GRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSS  166 (372)
T ss_pred             chhhHHHHhhCCCccCCC-----cc---cccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCC
Confidence            445889999964211100     00   0112346789999999999999999999999999999999999999998888


Q ss_pred             cccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEccccc
Q 012541          156 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGN  235 (461)
Q Consensus       156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~  235 (461)
                      +.+|+.|+|+|.++..+    |++++.++|+.|+|+|+++..+|..|+|.|++.+.+.++|.||+|+++|++|+|+|+|+
T Consensus       167 ~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~  242 (372)
T PRK14286        167 PTTCPDCGGSGQIRRTQ----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGE  242 (372)
T ss_pred             CccCCCCcCeEEEEEEe----ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccc
Confidence            89999999999987653    78888899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCC
Q 012541          236 FDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPD  314 (461)
Q Consensus       236 ~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~  314 (461)
                      +...+..+|||||+|+|++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+ +.|+||+++++|++++|+|+|||.
T Consensus       243 ~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~  322 (372)
T PRK14286        243 AGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPY  322 (372)
T ss_pred             cCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEECCCCCCC
Confidence            9876777899999999999999999999999999999999999999999999997 799999999999999999999997


Q ss_pred             CCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          315 INNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       315 ~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      .+. ..+|||||+|+|.||+.|+++|+++|++|+++.
T Consensus       323 ~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~  358 (372)
T PRK14286        323 LGA-YGKGDQHVIVKIEIPKKITRRQRELIEEFARES  358 (372)
T ss_pred             CCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            654 468999999999999999999999999999865

>PRK14284 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.5e-80  Score=639.10  Aligned_cols=336  Identities=34%  Similarity=0.634  Sum_probs=290.6

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccC-CCCCCCC------
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-LSNTSQG------   74 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~-~~~~~~~------   74 (461)
                      -+++++||+|||+||++||||+|+ +++|+++|++|++||||||||+||++||+||++++.++.++ ++++..+      
T Consensus        12 ~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~~g~~~~~~~~~   91 (391)
T PRK14284         12 TASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGGAGMGNMEDALR   91 (391)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCCCCcCcccchhh
Confidence            378999999999999999999998 47899999999999999999999999999999876432110 0101000      


Q ss_pred             ---------C-CcccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccC
Q 012541           75 ---------V-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDS  144 (461)
Q Consensus        75 ---------~-d~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~  144 (461)
                               + ++.|+|++||++.++.|++        ......+.++.|+++.|.|||||+|+|+++++.+.+.+.|++
T Consensus        92 ~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~--------~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~  163 (391)
T PRK14284         92 TFMGAFGGEFGGGGSFFEGLFGGLGEAFGM--------RGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDA  163 (391)
T ss_pred             hccccccccccccccchhhhccCccccccc--------cccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCC
Confidence                     0 1125566666432111110        001122457899999999999999999999999999999999


Q ss_pred             CCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCC
Q 012541          145 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSN  224 (461)
Q Consensus       145 C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~  224 (461)
                      |+|+|+..+..+.+|+.|+|+|.++..+    |++++.++|+.|+|+|+++.+.|..|+|.|++.+.++++|.||||+.+
T Consensus       164 C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~  239 (391)
T PRK14284        164 CSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDS  239 (391)
T ss_pred             CcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCCCC
Confidence            9999999999999999999999987543    778888999999999999999999999999999999999999999999


Q ss_pred             CCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeC--CeEEEEeCCCCCCC
Q 012541          225 GATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVE--GMKDLRIPSGVQPG  302 (461)
Q Consensus       225 G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tld--G~~~l~Ip~g~q~G  302 (461)
                      |++|+|+|+|+++..++.+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+|||  +.++|+||+++++|
T Consensus       240 G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g  319 (391)
T PRK14284        240 GMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSG  319 (391)
T ss_pred             CCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCC
Confidence            9999999999998888899999999999999999999999999999999999999999999999  56799999999999


Q ss_pred             CEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          303 DTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       303 ~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      ++++|+|+|||..++ ..+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus       320 ~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~  367 (391)
T PRK14284        320 TILKVRGQGFPNVHG-KGRGDLLVRISVETPQNLSEEQKELLRQFAATE  367 (391)
T ss_pred             eEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999999999997653 468999999999999999999999999998753

>PRK14297 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.1e-80  Score=635.59  Aligned_cols=337  Identities=35%  Similarity=0.664  Sum_probs=300.0

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccC--CCCCCCC----CC
Q 012541            4 RMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG--LSNTSQG----VD   76 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~--~~~~~~~----~d   76 (461)
                      ++.++|++|||+||++||||+|+ +++|+++|++|++||||||||+||++||+||+++++++.+.  +++++..    .+
T Consensus        16 a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~~~~~~~~~~~~~~   95 (380)
T PRK14297         16 ASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSGGFGGFDFSDMGG   95 (380)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCCCCCCCcCcccccc
Confidence            68899999999999999999998 47899999999999999999999999999999887632111  1111101    13


Q ss_pred             cccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccccc
Q 012541           77 PFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCI  156 (461)
Q Consensus        77 ~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~  156 (461)
                      +.|+|++|||+.   |++.+      . ....+.+++|+++.|.|||||+|+|++++|.+.+.+.|++|+|+|...+..+
T Consensus        96 ~~d~f~~~fgg~---~g~~~------~-~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~  165 (380)
T PRK14297         96 FGDIFDSFFGGG---FGSSS------R-RRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSP  165 (380)
T ss_pred             hhHHHHHHhccC---ccccc------c-ccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcC
Confidence            458899999641   21100      0 1122457899999999999999999999999999999999999999988889


Q ss_pred             ccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccC
Q 012541          157 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNF  236 (461)
Q Consensus       157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~  236 (461)
                      .+|+.|+|+|+++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+++|++|+|+|+|++
T Consensus       166 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~  245 (380)
T PRK14297        166 KTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEH  245 (380)
T ss_pred             ccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccC
Confidence            99999999999998889999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCC
Q 012541          237 DRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDIN  316 (461)
Q Consensus       237 ~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~  316 (461)
                      +..+..+|||||+|+|.+|+.|+|+|+||+++++|+|.+||+|+++.|+||||++.|+||+++++|++++|+|+|||..+
T Consensus       246 ~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~~ri~g~G~p~~~  325 (380)
T PRK14297        246 GKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTVFRLKGKGVPRVN  325 (380)
T ss_pred             CCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCEEEEcCCCcCCCC
Confidence            77777899999999999999999999999999999999999999999999999989999999999999999999999764


Q ss_pred             CCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          317 NPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       317 ~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      . ..+|||||+|+|.||+.|+++|+++|++|+...
T Consensus       326 ~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~  359 (380)
T PRK14297        326 S-TGRGNQYVTVIVDIPKKLNSKQKEALTMFMEAS  359 (380)
T ss_pred             C-CCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            3 468999999999999999999999999999764

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=7.2e-80  Score=640.37  Aligned_cols=323  Identities=28%  Similarity=0.525  Sum_probs=287.4

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYS   82 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~   82 (461)
                      -+++++||+|||+||+|||||+|++   +++|++|++||||||||+||++||+||++++.++.       ++.|+.|+|+
T Consensus        39 ~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~-------~~~d~~d~f~  108 (421)
T PTZ00037         39 DCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE-------QPADASDLFD  108 (421)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC-------CCcchhhhHH
Confidence            4789999999999999999999964   58999999999999999999999999998775321       1236778999


Q ss_pred             cccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCc
Q 012541           83 AFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKAC  162 (461)
Q Consensus        83 ~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C  162 (461)
                      .|||+.    +  .         +..+.++.|+.+.|.|||+|+|+|++++|.+.+.+.|+.|+|+|...+ ...+|+.|
T Consensus       109 ~~Fggg----~--~---------~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~C  172 (421)
T PTZ00037        109 LIFGGG----R--K---------PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKD-AFVDCKLC  172 (421)
T ss_pred             Hhhccc----c--c---------cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCC-CCccCCCC
Confidence            998641    0  0         012357899999999999999999999999999999999999998655 67899999


Q ss_pred             CCccEEEEeeecCCcceeeeecCCCCCCccEEEe--eeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCC
Q 012541          163 WGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--DHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRR  240 (461)
Q Consensus       163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g  240 (461)
                      +|+|.++...++.+..+++.++|+.|+|+|+++.  .+|..|+|.|++.+.++++|.||+|+.+|++|+|+|+|++.+ +
T Consensus       173 ~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~-~  251 (421)
T PTZ00037        173 NGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKP-N  251 (421)
T ss_pred             CCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCC-C
Confidence            9999987777665523345689999999999987  679999999999999999999999999999999999999864 5


Q ss_pred             CCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCC--CCCCCEEEEccCCCCCCCC
Q 012541          241 SLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG--VQPGDTVKLQQMGVPDINN  317 (461)
Q Consensus       241 ~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g--~q~G~~~~l~g~G~P~~~~  317 (461)
                      +.||||||+|++++|+.|+|+|+|||++++|+|.|||||+++.|+||||+ +.|+||+|  ++||++++|+|+|||..++
T Consensus       252 ~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~  331 (421)
T PTZ00037        252 EIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKS  331 (421)
T ss_pred             CCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCC
Confidence            78999999999999999999999999999999999999999999999997 68999998  9999999999999998765


Q ss_pred             CCCCccEEEEEEEEcC--CCCChhHHHHHHHHHhhcC
Q 012541          318 PSVRGDHLFIVNVLIP--KDISDPERALVEEIAFLKS  352 (461)
Q Consensus       318 ~~~rGDL~V~f~V~~P--~~ls~~q~~lle~l~~~~~  352 (461)
                      ++.+|||||+|+|.||  +.||++|+++|++|+...+
T Consensus       332 ~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~~~  368 (421)
T PTZ00037        332 PFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNP  368 (421)
T ss_pred             CCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccCCC
Confidence            5679999999999999  9999999999999997543

>PRK14281 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.4e-79  Score=633.26  Aligned_cols=345  Identities=33%  Similarity=0.619  Sum_probs=296.7

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccC-C--CCCCCCCCcc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-L--SNTSQGVDPF   78 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~-~--~~~~~~~d~~   78 (461)
                      -++.++||+|||+||++||||+|+ +++|+++|++|++||||||||+||++||+||+++++++... +  +.++.+.++.
T Consensus        14 ~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~~~~~~~~~~~~   93 (397)
T PRK14281         14 SADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGGPGYGGGGGDFN   93 (397)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCCCCCCcCCCCHH
Confidence            368899999999999999999998 47899999999999999999999999999999887632110 1  1111122333


Q ss_pred             cc---cccccCCCCCCCCCC------CCCCCc-ccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCC
Q 012541           79 EL---YSAFFGGSDGLFGGV------GEAGGI-NFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGT  148 (461)
Q Consensus        79 d~---F~~~Fg~~~~~f~~~------g~~~~~-~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~Gs  148 (461)
                      |+   |++|||+.+ ++++.      +.+++. ....+..+.++.|+++.|.|||||+|+|++++|.+.+.+.|++|+|+
T Consensus        94 d~f~~f~~~Fgg~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~  172 (397)
T PRK14281         94 DIFSAFNDMFGGGA-RRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGT  172 (397)
T ss_pred             HHHHHHHHHhCCCc-ccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCc
Confidence            44   457886521 11100      000110 00011123578999999999999999999999999999999999999


Q ss_pred             CcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEE
Q 012541          149 GAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATM  228 (461)
Q Consensus       149 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i  228 (461)
                      |...+ .+.+|+.|+|+|.++..+++.+|+++++++|+.|+|+|+++...|..|+|.|++...++++|.||+|+++|++|
T Consensus       173 G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i  251 (397)
T PRK14281        173 GSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYL  251 (397)
T ss_pred             ccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEecCCCCCCCCEE
Confidence            99886 68899999999999998899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEc
Q 012541          229 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQ  308 (461)
Q Consensus       229 ~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~  308 (461)
                      +|+|+|+++..++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||++.|+||+++++|++++|+
T Consensus       252 ~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G~~~ri~  331 (397)
T PRK14281        252 TLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPETMLRIP  331 (397)
T ss_pred             EEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCCcEEEEc
Confidence            99999999877778999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             cCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541          309 QMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL  350 (461)
Q Consensus       309 g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~  350 (461)
                      |+|||..+. ..+|||||+|+|.||+.||++|+++|++|++.
T Consensus       332 g~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~  372 (397)
T PRK14281        332 GKGIGHLRG-SGRGDQYVRVNVFVPKEVSHQDKELLKELKKS  372 (397)
T ss_pred             CCCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            999997653 46899999999999999999999999999974

>PRK14279 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.1e-79  Score=632.20  Aligned_cols=341  Identities=30%  Similarity=0.518  Sum_probs=286.6

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhccccccccccccccccccccccc------CCCCCC---
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD------GLSNTS---   72 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~------~~~~~~---   72 (461)
                      -++.++||+|||+||+|||||+|+ +++|+++|++|++||||||||+||++||+||+++..++..      +++.++   
T Consensus        20 ~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~~~~~~~~~g~~~   99 (392)
T PRK14279         20 DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRRFDGGGGFGGFGT   99 (392)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccccccCCCCCCCccc
Confidence            368899999999999999999998 5789999999999999999999999999999753321110      000000   


Q ss_pred             ----CCCCcccccccccCCCCCC----CCCCCCCC-CcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeecc
Q 012541           73 ----QGVDPFELYSAFFGGSDGL----FGGVGEAG-GINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD  143 (461)
Q Consensus        73 ----~~~d~~d~F~~~Fg~~~~~----f~~~g~~~-~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~  143 (461)
                          .+.|+.++|+.++++.++.    |+++  ++ +........+.+++|+++.|+|||+|+|+|+++++.+.+.+.|+
T Consensus       100 ~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~--fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~  177 (392)
T PRK14279        100 GGDGAEFNLNDLFDAAGRGGGGGIGDLFGGL--FNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCT  177 (392)
T ss_pred             cccccCcChhhhhcccccccccchhhhhhhh--hcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCC
Confidence                1123333333211110000    1100  00 00000112345789999999999999999999999999999999


Q ss_pred             CCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCC
Q 012541          144 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS  223 (461)
Q Consensus       144 ~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~  223 (461)
                      +|+|+|...+..+.+|+.|+|+|+++..+    |++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|++
T Consensus       178 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~  253 (392)
T PRK14279        178 TCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRIPPGVE  253 (392)
T ss_pred             CCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeEEEeCCCCC
Confidence            99999999998999999999999987643    66778899999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCC
Q 012541          224 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGD  303 (461)
Q Consensus       224 ~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~  303 (461)
                      +|++|+|+|+|++..+++.+|||||+|+|++|+.|+|+|+||+++++|||.+|++|+++.|+||||++.|+||+++++|+
T Consensus       254 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~  333 (392)
T PRK14279        254 DGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGR  333 (392)
T ss_pred             CCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCC
Confidence            99999999999998777788999999999999999999999999999999999999999999999998999999999999


Q ss_pred             EEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          304 TVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       304 ~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      +++|+|+|||..  .+.+|||||+|+|.||+.|+++|+++|++|+.+.
T Consensus       334 ~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~~  379 (392)
T PRK14279        334 ILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEAE  379 (392)
T ss_pred             EEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999999999963  3468999999999999999999999999999863

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.7e-79  Score=626.45  Aligned_cols=338  Identities=35%  Similarity=0.633  Sum_probs=297.2

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhcccccccccccccccccccccccC--CCCCC-C----
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG--LSNTS-Q----   73 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~--~~~~~-~----   73 (461)
                      -+++++||+|||+||++||||+|++  ++|+++|++|++||||||||+||++||+||++++...+.+  ++++. .    
T Consensus        15 ~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~~~~g~~~~~~~~   94 (369)
T PRK14282         15 NATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQETESGGGFFEDIFK   94 (369)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccCCCCCcccccccc
Confidence            4789999999999999999999983  6799999999999999999999999999999876532111  01110 0    


Q ss_pred             CC-Ccc--cccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCc
Q 012541           74 GV-DPF--ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGA  150 (461)
Q Consensus        74 ~~-d~~--d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~  150 (461)
                      .+ +++  |+|++|||+.    ++ +   +   ..+..+.+++|+++.|.|||+|+|+|+++++.+.+.+.|++|+|+|+
T Consensus        95 ~~~~~~~~d~f~~~fgg~----~~-~---~---~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~  163 (369)
T PRK14282         95 DFENIFNRDIFDIFFGER----RT-Q---E---EQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGV  163 (369)
T ss_pred             cccccccchhhhHhhccc----CC-c---c---cccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCC
Confidence            01 111  5666666531    00 0   0   01123457899999999999999999999999999999999999999


Q ss_pred             ccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEE
Q 012541          151 KSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI  230 (461)
Q Consensus       151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l  230 (461)
                      ..+..+.+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+.+|++|+|
T Consensus       164 ~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~  243 (369)
T PRK14282        164 EPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRI  243 (369)
T ss_pred             CCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEE
Confidence            99888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEcc
Q 012541          231 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQ  309 (461)
Q Consensus       231 ~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g  309 (461)
                      +|+|+++..++.+|||||+|++++|+.|+|+|+||++++.|||.||++|+++.|+|+||+ ++|+||+|+++|++++|+|
T Consensus       244 ~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~G  323 (369)
T PRK14282        244 TGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPETVFRLKG  323 (369)
T ss_pred             ecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEEEECC
Confidence            999999877788999999999999999999999999999999999999999999999996 6999999999999999999


Q ss_pred             CCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhcC
Q 012541          310 MGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKS  352 (461)
Q Consensus       310 ~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~~  352 (461)
                      +|||..+. +.+|||||+|+|.+|+.|+.+++++|++|+++..
T Consensus       324 kG~p~~~~-~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~~~  365 (369)
T PRK14282        324 KGLPNMRY-GRRGDLIVNVHVEIPKRLSREERKLLKELAKKRG  365 (369)
T ss_pred             CCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence            99997543 4689999999999999999999999999998654

>PRK14285 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6e-79  Score=625.87  Aligned_cols=334  Identities=27%  Similarity=0.551  Sum_probs=294.8

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCC--CCC-----C
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN--TSQ-----G   74 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~--~~~-----~   74 (461)
                      -+++++||+|||+||++||||+|+ +++|+++|++|++||||||||+||+.||+||++++.++.+.++.  +..     .
T Consensus        14 ~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~~~~g~~~~~~~~   93 (365)
T PRK14285         14 GASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGFSGGFSGFSDIF   93 (365)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccccCCCcccccccc
Confidence            478999999999999999999998 47899999999999999999999999999999887643211010  101     1


Q ss_pred             CCcccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccc
Q 012541           75 VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSN  154 (461)
Q Consensus        75 ~d~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~  154 (461)
                      .++.|+|++|||+.   .+  +   +    ....+.++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+.
T Consensus        94 ~~~~d~f~~~fgg~---~~--~---~----~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~  161 (365)
T PRK14285         94 EDFGDIFDSFFTGN---RG--Q---D----KNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGT  161 (365)
T ss_pred             ccHHHHHHHhhcCC---cC--C---C----CCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCC
Confidence            13447788888631   00  0   0    01124578999999999999999999999999999999999999999988


Q ss_pred             ccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccc
Q 012541          155 CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEG  234 (461)
Q Consensus       155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G  234 (461)
                      .+..|+.|+|+|+++.    .+|+++++++|+.|+|+|+++.++|..|+|.|++.+.+.++|.||+|+++|++|+|+|+|
T Consensus       162 ~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G  237 (365)
T PRK14285        162 SPSICNMCNGSGRVMQ----GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKG  237 (365)
T ss_pred             CCccCCCccCceeEEe----cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeecc
Confidence            8999999999998764    458888889999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCC
Q 012541          235 NFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVP  313 (461)
Q Consensus       235 ~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P  313 (461)
                      +++.+++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ ++|+||+++++|++++|+|+|||
T Consensus       238 ~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p  317 (365)
T PRK14285        238 SVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMP  317 (365)
T ss_pred             ccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCcc
Confidence            99877778999999999999999999999999999999999999999999999995 78999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhcCC
Q 012541          314 DINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSP  353 (461)
Q Consensus       314 ~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~~~  353 (461)
                      ..+. ..+|||||+|+|++|+.|+.+|+++|++|+++.+.
T Consensus       318 ~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~~  356 (365)
T PRK14285        318 ILHT-EKFGNLILIIKIKTPKNLNSNAIKLLENLSKELKD  356 (365)
T ss_pred             CCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            7654 35799999999999999999999999999988764

>PRK14301 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.3e-78  Score=622.07  Aligned_cols=332  Identities=36%  Similarity=0.667  Sum_probs=290.6

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcc---
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPF---   78 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~---   78 (461)
                      -++.++||+|||+||++||||+|+ +++|+++|++|++||||||||+||++||+||+++++++.++++.. ...+++   
T Consensus        15 ~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g~~-~~~~~~~~f   93 (373)
T PRK14301         15 DASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGGFS-SAEDIFSHF   93 (373)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCCcc-cccccccch
Confidence            368899999999999999999998 478999999999999999999999999999998876421111111 111222   


Q ss_pred             -cccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccc
Q 012541           79 -ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQ  157 (461)
Q Consensus        79 -d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~  157 (461)
                       |+|++|||+.     + +  ++ .  ...++.++.|+++.|.|||||+|+|+++++.+.+.+.|+.|+|+|......+.
T Consensus        94 ~d~f~~~fg~g-----~-~--~~-~--~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~  162 (373)
T PRK14301         94 SDIFGDLFGFS-----G-G--GS-R--RGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPE  162 (373)
T ss_pred             HHHHHHHhhcc-----C-c--cc-c--cCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCc
Confidence             4555555311     0 0  00 0  11234678999999999999999999999999999999999999999888889


Q ss_pred             cCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCC
Q 012541          158 SCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFD  237 (461)
Q Consensus       158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~  237 (461)
                      +|+.|+|+|.+...+    |++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+++|++|+|+|+|+++
T Consensus       163 ~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~  238 (373)
T PRK14301        163 TCRHCGGSGQVRQSQ----GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPG  238 (373)
T ss_pred             ccCCccCeeEEEEEe----eeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCC
Confidence            999999999987542    7788889999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCC
Q 012541          238 RRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINN  317 (461)
Q Consensus       238 ~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~  317 (461)
                      ..++.+|||||+|+|++|+.|+|+|+||+++++|+|.+||+|+++.|+||||++.|+||+++++|++++|+|+|||..+.
T Consensus       239 ~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~  318 (373)
T PRK14301        239 VHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRGKGLPYLGS  318 (373)
T ss_pred             CCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEEcCCCCCCCCC
Confidence            77778999999999999999999999999999999999999999999999999899999999999999999999997653


Q ss_pred             CCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          318 PSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       318 ~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                       ..+|||||+|+|.+|+.|+++|+++|++|+.+.
T Consensus       319 -~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~~  351 (373)
T PRK14301        319 -SQKGDLLVEVSVVTPTKLTKRQEELLREFEALE  351 (373)
T ss_pred             -CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence             468999999999999999999999999999763

>PRK14295 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.1e-78  Score=621.92  Aligned_cols=339  Identities=34%  Similarity=0.561  Sum_probs=289.3

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccc----cccccccccccCCCCCCCCCCc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDR----FGEAGITGEYDGLSNTSQGVDP   77 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~----~G~~g~~~~~~~~~~~~~~~d~   77 (461)
                      -++.++||+|||+||++||||+|+ +++|+++|++|++||||||||+||++||+    ||++++.++.+++++++..+|+
T Consensus        20 ~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~~~~~~~~~~~~~   99 (389)
T PRK14295         20 DATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGPGGGGGGGFNFDL   99 (389)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCCCCCCCCCCCccc
Confidence            368999999999999999999998 46799999999999999999999999999    9998876321111011112344


Q ss_pred             ccccccccCCCC-C--------CCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCC
Q 012541           78 FELYSAFFGGSD-G--------LFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGT  148 (461)
Q Consensus        78 ~d~F~~~Fg~~~-~--------~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~Gs  148 (461)
                      .++|+.++++.+ +        .|++  .+++.  ..+..+.+++|+++.|.|||||+|+|++++|.+.+.+.|++|+|+
T Consensus       100 ~~~f~~~~~~~~~~~~~~~f~d~f~~--~fg~~--~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~  175 (389)
T PRK14295        100 GDLFGGGAQGGGGAGGGGGLGDVFGG--LFNRG--GRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGT  175 (389)
T ss_pred             ccccccccccccccccccchhhhhcc--cccCC--CCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCccc
Confidence            455543321100 0        0110  00100  011234578999999999999999999999999999999999999


Q ss_pred             CcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEE
Q 012541          149 GAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATM  228 (461)
Q Consensus       149 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i  228 (461)
                      |...+..+.+|+.|+|+|.++..+    |+|+++++|+.|+|+|+++...|..|.|.|++.+.+.++|.||+|+++|++|
T Consensus       176 G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i  251 (389)
T PRK14295        176 GAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRI  251 (389)
T ss_pred             ccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEE
Confidence            999998899999999999987653    6778888999999999999999999999999999999999999999999999


Q ss_pred             EEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCC-eEEEEeCCCCCCCCEEEE
Q 012541          229 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG-MKDLRIPSGVQPGDTVKL  307 (461)
Q Consensus       229 ~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG-~~~l~Ip~g~q~G~~~~l  307 (461)
                      +|+|+|++...++.+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+|||| .+.|+||+++++|++++|
T Consensus       252 ~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~iri  331 (389)
T PRK14295        252 RLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLRV  331 (389)
T ss_pred             EEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEEE
Confidence            9999999987778899999999999999999999999999999999999999999999999 579999999999999999


Q ss_pred             ccCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          308 QQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       308 ~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      +|+|||..  .+.+|||||+|+|.||+.|+++|+++|++|++..
T Consensus       332 ~G~G~p~~--~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~~  373 (389)
T PRK14295        332 RGKGAVRK--DGTRGDLLVTVEVAVPKDLSGKAREALEAFREAT  373 (389)
T ss_pred             CCCCcCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            99999963  3468999999999999999999999999999754

>PRK14294 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.3e-77  Score=614.96  Aligned_cols=333  Identities=35%  Similarity=0.653  Sum_probs=292.6

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCC---CCCcc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQ---GVDPF   78 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~---~~d~~   78 (461)
                      -++.++|++|||+||++||||+|+ +++|+++|++|++||||||||+||+.||+||+++++++.. ++.++.   ..++.
T Consensus        15 ~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~-~~~~~~~~~~~~~~   93 (366)
T PRK14294         15 DASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGF-SGFSGFDDIFSSFG   93 (366)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCC-CCcCccccchhhhh
Confidence            368899999999999999999998 5789999999999999999999999999999998864211 111111   01234


Q ss_pred             cccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccccccc
Q 012541           79 ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQS  158 (461)
Q Consensus        79 d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~  158 (461)
                      |+|++|||..  +++     ++   .....+.+++|+++.|.|||||+|+|+++++.+.+.+.|+.|+|+|......+.+
T Consensus        94 d~f~~~fg~g--~~~-----~~---~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~  163 (366)
T PRK14294         94 DIFEDFFGFG--GGR-----RG---RSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTT  163 (366)
T ss_pred             hhHHHhhccC--CCc-----CC---cccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCccc
Confidence            7788888510  000     00   0012245789999999999999999999999999999999999999998888999


Q ss_pred             CCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCC
Q 012541          159 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR  238 (461)
Q Consensus       159 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~  238 (461)
                      |+.|+|+|.++...    |++++.++|+.|+|+|+++...|..|+|.|++.+.+.++|.||+|+++|++|+|+|+|+++.
T Consensus       164 C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~  239 (366)
T PRK14294        164 CPQCGGSGQVTQSQ----GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGV  239 (366)
T ss_pred             CCCcCCeEEEEEEe----eeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCC
Confidence            99999999987532    78888899999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCC
Q 012541          239 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP  318 (461)
Q Consensus       239 ~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~  318 (461)
                      .++.+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||++.|+||+++++|++++|+|+|||..+. 
T Consensus       240 ~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G~p~~~~-  318 (366)
T PRK14294        240 RGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKGKGIPSLRG-  318 (366)
T ss_pred             CCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEECCCCCCCCCC-
Confidence            7788999999999999999999999999999999999999999999999998899999999999999999999997653 


Q ss_pred             CCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          319 SVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       319 ~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      ..+|||||+|+|.+|+.|+.+|+++|++|+.+.
T Consensus       319 ~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~  351 (366)
T PRK14294        319 GGRGDQIIEVEVKVPTRLTKKQEELLTEFARLE  351 (366)
T ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            368999999999999999999999999999763

>PRK10767 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6.3e-77  Score=613.10  Aligned_cols=330  Identities=36%  Similarity=0.666  Sum_probs=288.8

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCC-CCC-C-cc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS-QGV-D-PF   78 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~-~~~-d-~~   78 (461)
                      -++.++||+|||+||++||||+|+ +++|+++|++|++|||||+||++|+.||+||++++.++.++++.++ .++ | +.
T Consensus        15 ~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~~~~~~~~~~f~   94 (371)
T PRK10767         15 NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGGFGGGGGFGDIFG   94 (371)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCCCCCccccccchh
Confidence            478999999999999999999998 5789999999999999999999999999999988764321111111 011 2 12


Q ss_pred             cccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccccccc
Q 012541           79 ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQS  158 (461)
Q Consensus        79 d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~  158 (461)
                      |+|+.|||+.   +   +   +    .+..+.++.|+++.|.|||||+|+|++++|.+.+.+.|+.|+|+|...+.....
T Consensus        95 ~~f~~~fgg~---~---~---~----~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~  161 (371)
T PRK10767         95 DIFGDIFGGG---R---G---G----GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKT  161 (371)
T ss_pred             hhhhhhccCC---c---c---c----cCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCcc
Confidence            3444444320   0   0   0    112246789999999999999999999999999999999999999999888899


Q ss_pred             CCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCC
Q 012541          159 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR  238 (461)
Q Consensus       159 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~  238 (461)
                      |+.|+|+|.++..+    |++++.++|+.|+|+|+++...|..|+|.|++.+.+.++|.||+|+.+|++|+|+|+|+++.
T Consensus       162 C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~  237 (371)
T PRK10767        162 CPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGE  237 (371)
T ss_pred             CCCCCCeeEEEEee----ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCC
Confidence            99999999876543    77787889999999999999999999999999999999999999999999999999999977


Q ss_pred             CCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCC
Q 012541          239 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP  318 (461)
Q Consensus       239 ~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~  318 (461)
                      +++.+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||.+.|+||+++++|++++|+|+|||..+. 
T Consensus       238 ~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~-  316 (371)
T PRK10767        238 RGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGKGVKSVRS-  316 (371)
T ss_pred             CCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEECCCCcCCCCC-
Confidence            7778999999999999999999999999999999999999999999999998899999999999999999999997654 


Q ss_pred             CCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541          319 SVRGDHLFIVNVLIPKDISDPERALVEEIAFL  350 (461)
Q Consensus       319 ~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~  350 (461)
                      ..+|||||+|+|.+|+.|+.+|+++|++|++.
T Consensus       317 ~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~  348 (371)
T PRK10767        317 GARGDLYCQVVVETPVNLTKRQKELLEEFEES  348 (371)
T ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            46899999999999999999999999999974

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=100.00  E-value=6.3e-77  Score=609.88  Aligned_cols=337  Identities=40%  Similarity=0.708  Sum_probs=299.9

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccC--CCCCCC---C-CC
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG--LSNTSQ---G-VD   76 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~--~~~~~~---~-~d   76 (461)
                      -++.++||+|||+||++||||+|++++|+++|++|++||||||||.||+.||+||+++++++.++  ++..+.   + .+
T Consensus        11 ~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~~~~~~~~~~~   90 (354)
T TIGR02349        11 DASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGFNGFDIGFFGD   90 (354)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCcCCccccCcCc
Confidence            36889999999999999999999988899999999999999999999999999999887642211  111100   1 13


Q ss_pred             cccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccccc
Q 012541           77 PFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCI  156 (461)
Q Consensus        77 ~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~  156 (461)
                      +.|+|++|||+.   +++ +      ......+.+++|+++.|.|||||+|+|+++++.+.+.+.|+.|+|+|.......
T Consensus        91 ~~~~f~~~fg~~---~g~-~------~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~  160 (354)
T TIGR02349        91 FGDIFGDFFGGG---GGS-G------RRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDP  160 (354)
T ss_pred             hhhhHHHHhccC---ccc-C------ccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCC
Confidence            457888888642   110 0      001123467899999999999999999999999999999999999999988889


Q ss_pred             ccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccC
Q 012541          157 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNF  236 (461)
Q Consensus       157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~  236 (461)
                      .+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|.|.|++.+.+.++|.||+|+++|++|+|+|+|++
T Consensus       161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~  240 (354)
T TIGR02349       161 KTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNA  240 (354)
T ss_pred             ccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCC
Q 012541          237 DRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDIN  316 (461)
Q Consensus       237 ~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~  316 (461)
                      ...++.+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||.++|.||+++++|++++|+|+|||..+
T Consensus       241 ~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~  320 (354)
T TIGR02349       241 GENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRLKGKGVPRLR  320 (354)
T ss_pred             CCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEEECCCCcCCCC
Confidence            76777899999999999999999999999999999999999999999999999889999999999999999999999765


Q ss_pred             CCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541          317 NPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL  350 (461)
Q Consensus       317 ~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~  350 (461)
                      . ..+|||||+|+|.+|+.|+.+|+++|++|++.
T Consensus       321 ~-~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~  353 (354)
T TIGR02349       321 G-NGRGDLLVTVKVETPKNLSKEQKELLEELAEA  353 (354)
T ss_pred             C-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4 36899999999999999999999999999864

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.6e-76  Score=612.88  Aligned_cols=345  Identities=35%  Similarity=0.641  Sum_probs=298.2

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELY   81 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F   81 (461)
                      -++.++|++|||+||++||||+|+ +++|+++|++|++|||||+||+||++||+||+++++++.+.++.++.++++.++|
T Consensus        16 ~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~~~~~~~~~~~~f   95 (386)
T PRK14289         16 TATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGGFSGEGMSMEDIF   95 (386)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCCCCCCCcChhhhh
Confidence            378899999999999999999998 5789999999999999999999999999999988764211111111123444554


Q ss_pred             cc---ccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccccccc
Q 012541           82 SA---FFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQS  158 (461)
Q Consensus        82 ~~---~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~  158 (461)
                      +.   +|+++.+++++.+.+++  ......+.++.|+++.|.|||||+|+|+++++.+.+.+.|+.|+|+|.........
T Consensus        96 ~~f~~~fg~~~gg~~~~~~~~~--~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~  173 (386)
T PRK14289         96 SMFGDIFGGHGGGFGGFGGFGG--GGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSET  173 (386)
T ss_pred             HHhhhhhcccccCccccccccc--ccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCc
Confidence            33   36432111110000000  00112245789999999999999999999999999999999999999999888999


Q ss_pred             CCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCC
Q 012541          159 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR  238 (461)
Q Consensus       159 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~  238 (461)
                      |+.|+|+|.++..+++++|++++..+|+.|+|+|+++...|..|+|.|++.+.+.++|.||+|+++|++|+|+|+|++..
T Consensus       174 C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~  253 (386)
T PRK14289        174 CPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKGNAGK  253 (386)
T ss_pred             CCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEEeccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCC
Q 012541          239 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP  318 (461)
Q Consensus       239 ~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~  318 (461)
                      .++.+|||||+|++.+|+.|+|+++||++++.|+|.+|++|+++.|+|+||++.|+||+++++|++++|+|+|||..++ 
T Consensus       254 ~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~-  332 (386)
T PRK14289        254 HGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVLRLRNKGLPSVNG-  332 (386)
T ss_pred             CCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCcEEEECCCCcCCCCC-
Confidence            6778999999999999999999999999999999999999999999999999899999999999999999999997554 


Q ss_pred             CCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541          319 SVRGDHLFIVNVLIPKDISDPERALVEEIAFL  350 (461)
Q Consensus       319 ~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~  350 (461)
                      ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus       333 ~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~  364 (386)
T PRK14289        333 YGTGDLLVNVSVYIPETLSKEEKQTLEKMENS  364 (386)
T ss_pred             CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence            46899999999999999999999999999985

>PRK14300 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.2e-76  Score=610.65  Aligned_cols=335  Identities=33%  Similarity=0.625  Sum_probs=292.0

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccccccccccc-CCCC--CCCCCCccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD-GLSN--TSQGVDPFE   79 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~-~~~~--~~~~~d~~d   79 (461)
                      -+++++|++|||+||++||||+|+++.|+++|++|++|||||+||.||+.||+||++++.++.. ++++  ++.+.++.+
T Consensus        14 ~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g~~~~~~~~~~~   93 (372)
T PRK14300         14 TASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGGNHGGFHPDIND   93 (372)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCCCCCccccchhh
Confidence            4789999999999999999999988889999999999999999999999999999988764211 0111  111113446


Q ss_pred             ccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccC
Q 012541           80 LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSC  159 (461)
Q Consensus        80 ~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C  159 (461)
                      +|++||+++   |++.+   .  ......+.++.|+++.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+..+.+|
T Consensus        94 ~f~~~f~~~---~gg~~---~--~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C  165 (372)
T PRK14300         94 IFGDFFSDF---MGGSR---R--SRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTC  165 (372)
T ss_pred             hHHHHHHhh---cCCCC---C--CCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccC
Confidence            677777542   22111   0  001112357899999999999999999999999999999999999999998889999


Q ss_pred             CCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCC
Q 012541          160 KACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRR  239 (461)
Q Consensus       160 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~  239 (461)
                      +.|+|+|.++..    +|++++..+|+.|+|.|+++...|..|+|.|++.+.+.++|.||+|+++|++|+|+|+|+++.+
T Consensus       166 ~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~  241 (372)
T PRK14300        166 DACSGVGATRMQ----QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIR  241 (372)
T ss_pred             CCccCeEEEEEe----eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCC
Confidence            999999988653    3788888899999999999999999999999999999999999999999999999999999777


Q ss_pred             CCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCC-eEEEEeCCCCCCCCEEEEccCCCCCCCCC
Q 012541          240 RSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG-MKDLRIPSGVQPGDTVKLQQMGVPDINNP  318 (461)
Q Consensus       240 g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG-~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~  318 (461)
                      ++.+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+|||| .++|+||+|+++|++++|+|+|||..++ 
T Consensus       242 ~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~~-  320 (372)
T PRK14300        242 GGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMRS-  320 (372)
T ss_pred             CCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCCCCC-
Confidence            78899999999999999999999999999999999999999999999998 5799999999999999999999997543 


Q ss_pred             CCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541          319 SVRGDHLFIVNVLIPKDISDPERALVEEIAFL  350 (461)
Q Consensus       319 ~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~  350 (461)
                      ..+|||||+|+|.||+.||++|+++|++|+..
T Consensus       321 ~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~~  352 (372)
T PRK14300        321 TIRGDMLTHIHVEVPKNLSKRQRELLEEFKKE  352 (372)
T ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            46899999999999999999999999999864

>PRK14291 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.1e-76  Score=612.85  Aligned_cols=345  Identities=32%  Similarity=0.579  Sum_probs=294.9

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCC----CCC-CCCCCc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL----SNT-SQGVDP   77 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~----~~~-~~~~d~   77 (461)
                      -++.++||+|||+||++||||+|++++|+++|++|++||||||||+||++||+||++++.++.+..    +.+ ..+.++
T Consensus        14 ~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~~~~~~~~~~~~   93 (382)
T PRK14291         14 NATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQGQEGFSDFGGGNI   93 (382)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccccccccccccCCCH
Confidence            478999999999999999999999889999999999999999999999999999998875422110    111 112355


Q ss_pred             ccccccccCCCC--CCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccc
Q 012541           78 FELYSAFFGGSD--GLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNC  155 (461)
Q Consensus        78 ~d~F~~~Fg~~~--~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~  155 (461)
                      .|+|++||+.++  +.|++.+..++ .......+.+++|+.+.|.|||+|+|+|+++++.+.+.+.|..|+|+|...+..
T Consensus        94 ~d~f~~~f~~fg~~~~fg~~~~~~~-~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~  172 (382)
T PRK14291         94 EDILEDVFDIFGFGDIFGRRRATRE-RRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSG  172 (382)
T ss_pred             HHHHHHHHHhccccccccccccccc-cccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCC
Confidence            677888754221  11221100000 000112245789999999999999999999999999999999999999999988


Q ss_pred             cccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEccccc
Q 012541          156 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGN  235 (461)
Q Consensus       156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~  235 (461)
                      +.+|+.|+|+|.++..    .|++++.++|+.|+|+|. +...|..|+|.|++.+.++++|.||||+.+|++|+|+|+|+
T Consensus       173 ~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~  247 (382)
T PRK14291        173 EKVCPTCGGSGEIYQR----GGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRVPGKGH  247 (382)
T ss_pred             CccCCCCCCceEEEEe----cceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCCCCEEEEecCcC
Confidence            9999999999988764    266777899999999995 78889999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCC
Q 012541          236 FDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPD  314 (461)
Q Consensus       236 ~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~  314 (461)
                      .+.+++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+||+ ++|+||+|+++|++++|+|+|||.
T Consensus       248 ~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~i~G~G~p~  327 (382)
T PRK14291        248 AGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPR  327 (382)
T ss_pred             CCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEEEECCCCCCC
Confidence            9877889999999999999999999999999999999999999999999999996 689999999999999999999997


Q ss_pred             CCCCCCCccEEEEEEEEcCC--CCC------hhHHHHHHHHHhhcCCC
Q 012541          315 INNPSVRGDHLFIVNVLIPK--DIS------DPERALVEEIAFLKSPG  354 (461)
Q Consensus       315 ~~~~~~rGDL~V~f~V~~P~--~ls------~~q~~lle~l~~~~~~~  354 (461)
                      .+. ..+|||||+|+|.||+  .||      ++|++||++|+++....
T Consensus       328 ~~~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~~~~  374 (382)
T PRK14291        328 LKG-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLLPEP  374 (382)
T ss_pred             CCC-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhcCCc
Confidence            653 4689999999999998  599      99999999999877543

>PRK14283 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.5e-76  Score=611.15  Aligned_cols=341  Identities=33%  Similarity=0.624  Sum_probs=293.5

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYS   82 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~   82 (461)
                      -+++++||+|||+||+|||||+|++++|+++|++|++||||||||+||++||+||++++.+... ++. ..+.++.++|.
T Consensus        16 ~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~-~~~-~~~~~~~~~~~   93 (378)
T PRK14283         16 NADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQ-EDI-FNNINFEDIFQ   93 (378)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccc-ccc-ccccCcccccc
Confidence            4789999999999999999999998899999999999999999999999999999987753110 000 00112223333


Q ss_pred             cccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCc
Q 012541           83 AFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKAC  162 (461)
Q Consensus        83 ~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C  162 (461)
                      .|+++.+..|..++ +++.   ....+.++.|++++|.|||+|+|+|+++++.+.+.+.|++|+|+|...+.....|+.|
T Consensus        94 ~~~~~~~~~f~~~~-fgg~---~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C  169 (378)
T PRK14283         94 GFGFGIGNIFDMFG-FGGG---SRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTC  169 (378)
T ss_pred             ccccchhhhccccc-cCCC---CCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCc
Confidence            32211100111000 0000   0112357899999999999999999999999999999999999999988889999999


Q ss_pred             CCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCC
Q 012541          163 WGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSL  242 (461)
Q Consensus       163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~  242 (461)
                      +|+|.++..+++.+|++++..+|+.|+|.|+.+...|..|+|.|++.+.+.++|.||+|+++|++|+|+|+|++...++.
T Consensus       170 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~  249 (378)
T PRK14283        170 GGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGE  249 (378)
T ss_pred             CCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCCCCCC
Confidence            99999999889999999999999999999999999999999999999999999999999999999999999998776678


Q ss_pred             CccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCc
Q 012541          243 AGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRG  322 (461)
Q Consensus       243 ~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rG  322 (461)
                      +|||||+|+|.+|+.|+|+|+||++++.|+|.+|++|+++.|+||||.+.|+||+++++|++++|+|+|||.... ..+|
T Consensus       250 ~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~-~~~G  328 (378)
T PRK14283        250 PGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHGMPSLRW-SGKG  328 (378)
T ss_pred             CccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECCCCCCCCCC-CCCC
Confidence            999999999999999999999999999999999999999999999998899999999999999999999997553 4689


Q ss_pred             cEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541          323 DHLFIVNVLIPKDISDPERALVEEIAFL  350 (461)
Q Consensus       323 DL~V~f~V~~P~~ls~~q~~lle~l~~~  350 (461)
                      ||||+|+|.||+.|+++|+++|++|+..
T Consensus       329 dL~v~~~v~~P~~l~~~q~~ll~~~~~~  356 (378)
T PRK14283        329 NLYVKVKVVVPKKLSPKQKELLREFASI  356 (378)
T ss_pred             CEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999999999999864

>PRK14292 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5e-76  Score=606.41  Aligned_cols=335  Identities=31%  Similarity=0.585  Sum_probs=295.8

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYS   82 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~   82 (461)
                      -+++++|++|||+||++||||+|++++|+++|++|++||||||||++|+.||+||+++..+..++++.++.++|+.|+|+
T Consensus        13 ~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~~~~~d~~d~f~   92 (371)
T PRK14292         13 TASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFGGMGFDPMDIFE   92 (371)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccCccCCChHHHHH
Confidence            47899999999999999999999988899999999999999999999999999999864321111111222357779999


Q ss_pred             cccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccc-ccccCCC
Q 012541           83 AFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSN-CIQSCKA  161 (461)
Q Consensus        83 ~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~-~~~~C~~  161 (461)
                      .|||+.  ++++ + .      ....+.++.|+.+.+.|||+|+|+|+++++.+.+.+.|++|+|+|..... ...+|+.
T Consensus        93 ~~fg~~--~~~~-~-~------~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~  162 (371)
T PRK14292         93 QLFGGA--GFGG-G-R------GRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPT  162 (371)
T ss_pred             HhhCCC--CcCC-C-C------CcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCC
Confidence            999752  1110 0 0      01124578999999999999999999999999999999999999998765 4789999


Q ss_pred             cCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCC
Q 012541          162 CWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRS  241 (461)
Q Consensus       162 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~  241 (461)
                      |+|+|.+...+++.+|++++.++|+.|+|.|..+...|..|.|.|++...+.++|.||+|+.+|++|+|+|+|+++..+ 
T Consensus       163 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~-  241 (371)
T PRK14292        163 CRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGG-  241 (371)
T ss_pred             CCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCC-
Confidence            9999999888888889999889999999999999999999999999999999999999999999999999999986543 


Q ss_pred             CCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCC
Q 012541          242 LAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVR  321 (461)
Q Consensus       242 ~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~r  321 (461)
                      . |||||+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+||||+..|+||+|+++|++++|+|+|||..++ ..+
T Consensus       242 ~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G~p~~~~-~~~  319 (371)
T PRK14292        242 N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQGMPRLQG-AGT  319 (371)
T ss_pred             C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCCCCCCCC-CCC
Confidence            3 99999999999999999999999999999999999999999999998789999999999999999999997654 368


Q ss_pred             ccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541          322 GDHLFIVNVLIPKDISDPERALVEEIAFL  350 (461)
Q Consensus       322 GDL~V~f~V~~P~~ls~~q~~lle~l~~~  350 (461)
                      |||||+|+|.+|+.|+++|+++|++|++.
T Consensus       320 GDL~V~~~v~~P~~l~~~q~~ll~~~~~~  348 (371)
T PRK14292        320 GDLIVEYEIAVPKQLSPEAREALEAYARA  348 (371)
T ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            99999999999999999999999999864

>PRK14293 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1e-75  Score=604.23  Aligned_cols=342  Identities=43%  Similarity=0.782  Sum_probs=301.0

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYS   82 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~   82 (461)
                      -+++++|++|||+||++||||+|++++|+++|++|++||+|||||+||++||+||+++++++.+.++.++ ..++.|+|+
T Consensus        14 ~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~~~-~~~~~d~f~   92 (374)
T PRK14293         14 DADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDMGD-MGGFADIFE   92 (374)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCccc-ccchHHHHH
Confidence            3689999999999999999999998889999999999999999999999999999987763211011110 112347889


Q ss_pred             cccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCc
Q 012541           83 AFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKAC  162 (461)
Q Consensus        83 ~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C  162 (461)
                      +||+++++ ++  + .+. .. ....+.++.|+++.|.|||||+|+|+++++.+.+.+.|..|+|+|........+|+.|
T Consensus        93 ~~fg~~~~-~~--~-~~~-~~-~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C  166 (374)
T PRK14293         93 TFFSGFGG-AG--G-QGG-RR-RRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTC  166 (374)
T ss_pred             HHhcccCC-CC--C-CCc-cc-cccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCC
Confidence            99864211 11  0 000 00 1122457899999999999999999999999999999999999999988888999999


Q ss_pred             CCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCC
Q 012541          163 WGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSL  242 (461)
Q Consensus       163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~  242 (461)
                      +|+|.++..+++++|++++.++|+.|+|.|+++...|..|.|.|++.+.+.++|.||+|+++|++|+|+|+|++...+..
T Consensus       167 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~  246 (374)
T PRK14293        167 GGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGP  246 (374)
T ss_pred             CCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCCCCC
Confidence            99999999889999999999999999999999999999999999999999999999999999999999999998766677


Q ss_pred             CccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCc
Q 012541          243 AGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRG  322 (461)
Q Consensus       243 ~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rG  322 (461)
                      +|||||+|++++|+.|+|+|+||+++++|||.+|++|+++.|+||||+++|+||+++++|++++|+|+|||..+..+.+|
T Consensus       247 ~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~G  326 (374)
T PRK14293        247 PGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLGNPVARG  326 (374)
T ss_pred             CcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcC
Confidence            89999999999999999999999999999999999999999999999888999999999999999999999766545689


Q ss_pred             cEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          323 DHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       323 DL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      ||||+|+|+||+.|+++|+++|++|+++.
T Consensus       327 DL~v~~~v~~P~~l~~~~~~l~~~l~~~~  355 (374)
T PRK14293        327 DHLITVKVKIPTRISDEERELLEKLAKIK  355 (374)
T ss_pred             CEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            99999999999999999999999999764

>PRK14290 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6e-75  Score=596.81  Aligned_cols=340  Identities=31%  Similarity=0.580  Sum_probs=290.1

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCC-h-hhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCC--CCCCcc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKS-P-GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS--QGVDPF   78 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~-~-~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~--~~~d~~   78 (461)
                      -++..+|++|||+||++||||+|++ + +|+++|++|++||||||||+||++||+||+++++++.++.++++  ...|+.
T Consensus        14 ~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~~~~~~~~~~~~   93 (365)
T PRK14290         14 NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFNWDNFTHFSDIN   93 (365)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCccccccccccchh
Confidence            4789999999999999999999984 3 79999999999999999999999999999988753211000000  013567


Q ss_pred             cccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCccccccccc
Q 012541           79 ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQS  158 (461)
Q Consensus        79 d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~  158 (461)
                      |+|+.|||+.   |++.. +++... ....+.+++|+++.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.... ...+
T Consensus        94 d~f~~~fg~~---~~~~~-~~~~~~-~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~-~~~~  167 (365)
T PRK14290         94 DIFNQIFGGN---FGSDF-FSGFGN-QQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNG-KLIT  167 (365)
T ss_pred             HHHHHHhcCc---ccccc-cccccc-ccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCC-CCcc
Confidence            8999999742   11000 001000 0111234789999999999999999999999999999999999999876 6789


Q ss_pred             CCCcCCccEEEEeeecCCccee--eeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccC
Q 012541          159 CKACWGRGGVLKTQRTPFGLIS--QVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNF  236 (461)
Q Consensus       159 C~~C~G~G~~~~~~~~~~g~~~--~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~  236 (461)
                      |+.|+|+|++...+.  +|++.  +..+|+.|+|.|+++...|..|+|.|++.+.+.++|.||+|+.+|++|+|+|+|+.
T Consensus       168 C~~C~G~G~~~~~~~--~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~  245 (365)
T PRK14290        168 CPTCHGTGQQRIVRG--QGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQS  245 (365)
T ss_pred             CCCCCCcCEEEEEec--cCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCC
Confidence            999999998876653  45553  35799999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCC
Q 012541          237 DRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDIN  316 (461)
Q Consensus       237 ~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~  316 (461)
                        .++.+|||||+|++++|+.|+|+|+||+++++|||.+|++|+++.|+|++|.++|+||+++++|++++|+|+|||...
T Consensus       246 --~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri~g~G~p~~~  323 (365)
T PRK14290        246 --YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKIKGAGMPHLN  323 (365)
T ss_pred             --CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEECCCCCCCCC
Confidence              578899999999999999999999999999999999999999999999999999999999999999999999999765


Q ss_pred             CCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhcCC
Q 012541          317 NPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSP  353 (461)
Q Consensus       317 ~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~~~  353 (461)
                      . ..+|||||+|+|.+|+.|+++++++|++|+.+...
T Consensus       324 ~-~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~~  359 (365)
T PRK14290        324 G-HGSGDLLVRINVEVPKRLTSKQKELIREFFDIKEN  359 (365)
T ss_pred             C-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence            4 36899999999999999999999999999976643

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.2e-71  Score=549.03  Aligned_cols=317  Identities=34%  Similarity=0.620  Sum_probs=284.1

Q ss_pred             CCCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCccccc
Q 012541            2 FVRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELY   81 (461)
Q Consensus         2 ~~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F   81 (461)
                      |-|+..+||+|||+||+|||||+||+  |.||||||++||||||||+||++||+||+++++++++++++       +. |
T Consensus        14 ~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~-------~~-f   83 (337)
T KOG0712|consen   14 PDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGF-------GG-F   83 (337)
T ss_pred             CCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCC-------cc-H
Confidence            56899999999999999999999975  89999999999999999999999999999999765432211       11 8


Q ss_pred             ccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCC
Q 012541           82 SAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKA  161 (461)
Q Consensus        82 ~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~  161 (461)
                      ++||+     |++.+   +      ..+.|++|+.+.++|||||+|.|.++++.+++..+|+.|+|+|.+++... .|+.
T Consensus        84 ~~~F~-----~g~~~---~------~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~-~C~~  148 (337)
T KOG0712|consen   84 SQFFG-----FGGNG---G------RGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAP-KCTT  148 (337)
T ss_pred             HHhcc-----CCCcC---c------cccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCC-CCCC
Confidence            88886     22111   0      11234999999999999999999999999999999999999999987654 8999


Q ss_pred             cCCccEEEEeeecCCcceeee-ecCCCCCCccEEEe--eeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCC
Q 012541          162 CWGRGGVLKTQRTPFGLISQV-STCSKCGGDGKIII--DHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR  238 (461)
Q Consensus       162 C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~~i~--~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~  238 (461)
                      |.|+|..+.+.++.+|+.|+. ..|..|+|+|..|.  +.|..|.|.+++...+.++|.|++|+.+++.|.+.|++++..
T Consensus       149 C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~  228 (337)
T KOG0712|consen  149 CRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAP  228 (337)
T ss_pred             CCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecC
Confidence            999999999999999999876 68999999999854  569999999999999999999999999999999999999864


Q ss_pred             CCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCC--CCCCCEEEEccCCCCCC
Q 012541          239 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG--VQPGDTVKLQQMGVPDI  315 (461)
Q Consensus       239 ~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g--~q~G~~~~l~g~G~P~~  315 (461)
                       +..|||+++.|..++|+.|.|.++||++..+|++.||++|+.+.+.||||+ +.+.++||  ++||++++|+|+|||+.
T Consensus       229 -g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~  307 (337)
T KOG0712|consen  229 -GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIF  307 (337)
T ss_pred             -CCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccc
Confidence             566999999999999999999999999999999999999999999999997 57888887  99999999999999999


Q ss_pred             CCCCCCccEEEEEEEEcCCCCChhHHHHHHHH
Q 012541          316 NNPSVRGDHLFIVNVLIPKDISDPERALVEEI  347 (461)
Q Consensus       316 ~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l  347 (461)
                      +++  +|||||+|.|+||+ +++++...|+.+
T Consensus       308 ~~~--~g~lyi~~~v~fp~-~~~~~~~~l~~~  336 (337)
T KOG0712|consen  308 RNP--KGDLYIKFEVKFPK-LSPSQLKMLEDL  336 (337)
T ss_pred             cCC--CCcEEEEEEEEcCC-CChHHHHHHHhh
Confidence            886  99999999999999 999998888876

>PRK14299 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.9e-59  Score=468.29  Aligned_cols=264  Identities=33%  Similarity=0.557  Sum_probs=219.8

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccC-----CC-CCCC---
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-----LS-NTSQ---   73 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~-----~~-~~~~---   73 (461)
                      -+++++||+|||+||++||||+|++++|+++|++|++||||||||+||+.||+||++++.++..+     ++ ++..   
T Consensus        15 ~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~~~~~~~~~~~~~   94 (291)
T PRK14299         15 NASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPPGPPGGGDFSGFN   94 (291)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCCCCCCCCCccccC
Confidence            37899999999999999999999988999999999999999999999999999999865432110     01 1111   


Q ss_pred             CCCcccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccc
Q 012541           74 GVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSS  153 (461)
Q Consensus        74 ~~d~~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~  153 (461)
                      ..++.|+|++|||+.+ ++++   ++.........+.++.|+++.+.|||+|+|.|+++++.+.                
T Consensus        95 ~~~~~d~f~~~fgg~~-~~~~---~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~----------------  154 (291)
T PRK14299         95 VGDFSDFFQQLFGGRG-GFGG---FGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA----------------  154 (291)
T ss_pred             cCCHHHHHHHHhCCCC-CCCC---cccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC----------------
Confidence            1245588999997421 1111   0100000012245789999999999999999999887542                


Q ss_pred             cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEccc
Q 012541          154 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGE  233 (461)
Q Consensus       154 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~  233 (461)
                                                                               .+.++|+||+|+++|++|+++|+
T Consensus       155 ---------------------------------------------------------g~~~~V~Ip~G~~~G~~ir~~g~  177 (291)
T PRK14299        155 ---------------------------------------------------------GERLSVRIPPGVREGQVIRLAGK  177 (291)
T ss_pred             ---------------------------------------------------------CEEEEEecCCCcCCCcEEEECCC
Confidence                                                                     14689999999999999999999


Q ss_pred             ccCCCCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCC
Q 012541          234 GNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVP  313 (461)
Q Consensus       234 G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P  313 (461)
                      |++.      |||||+|++++|+.|+|+|+||+++++|||.+|++|+++.|+||||.++|+||+++++|++++|+|+|||
T Consensus       178 G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~g~~~rl~g~G~p  251 (291)
T PRK14299        178 GRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAGRKLRLKGKGWP  251 (291)
T ss_pred             CCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCcCCCCEEEECCCCCC
Confidence            9862      9999999999999999999999999999999999999999999999989999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          314 DINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       314 ~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                      ..  ++.+|||||+|+|.+|+.|+++|+++|++|++..
T Consensus       252 ~~--~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~~~  287 (291)
T PRK14299        252 RG--PAGRGDQYAEVRITIPTRPTPEEERLYKQLAELY  287 (291)
T ss_pred             CC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            63  3568999999999999999999999999998764

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=100.00  E-value=1.7e-57  Score=457.42  Aligned_cols=275  Identities=24%  Similarity=0.392  Sum_probs=227.1

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccc----cccccccCCCC-CCCCCCc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA----GITGEYDGLSN-TSQGVDP   77 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~----g~~~~~~~~~~-~~~~~d~   77 (461)
                      -++.++||+|||+||+|||||+|++++|+++|++|++|||||+||+||+.||+||+.    ++.+....+++ .....|+
T Consensus        15 ~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~~~~~~~~~~~~~   94 (306)
T PRK10266         15 TDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQHGDGQSFNAEDF   94 (306)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccccCCCCCCCCCCH
Confidence            478999999999999999999999889999999999999999999999999999864    22211110011 1112355


Q ss_pred             ccccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccc
Q 012541           78 FELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQ  157 (461)
Q Consensus        78 ~d~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~  157 (461)
                      .++|+.|||+.    ++..        ....+.++.|+.+.+.|||+|+++|+.+++.+.+.+    |            
T Consensus        95 ~~~f~~~~g~~----~~~~--------~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~------------  146 (306)
T PRK10266         95 DDIFSSIFGQH----ARQS--------RQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----Y------------  146 (306)
T ss_pred             HHHHHHHhCCC----CCCC--------CCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----c------------
Confidence            68888888641    1000        011235789999999999999999999999887531    2            


Q ss_pred             cCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCC
Q 012541          158 SCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFD  237 (461)
Q Consensus       158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~  237 (461)
                           .|.|.+..                                      ...+.++|.||+|+++|++|+|+|+|++.
T Consensus       147 -----~g~G~~~~--------------------------------------~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~  183 (306)
T PRK10266        147 -----NAFGMIEQ--------------------------------------EIPKTLNVKIPAGVGNGQRIRLKGQGTPG  183 (306)
T ss_pred             -----cCCCeEEE--------------------------------------eeeEEEEEEECCCCcCCcEEEEecCCcCC
Confidence                 12221110                                      11357999999999999999999999997


Q ss_pred             CCCCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCC
Q 012541          238 RRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINN  317 (461)
Q Consensus       238 ~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~  317 (461)
                      .++..+|||||+|++.+|+.|+|+|+||+++++|||.+|++|+++.|+|++|.+.|+||+++++|++++|+|+|||..  
T Consensus       184 ~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~ri~g~G~p~~--  261 (306)
T PRK10266        184 ENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSK--  261 (306)
T ss_pred             CCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEEECCCCCCCC--
Confidence            777789999999999999999999999999999999999999999999999998999999999999999999999964  


Q ss_pred             CCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 012541          318 PSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  351 (461)
Q Consensus       318 ~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~~  351 (461)
                       +.+|||||+|+|.+|+.|+++|+++|++|+.+.
T Consensus       262 -~~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~~  294 (306)
T PRK10266        262 -KQTGDLYAVLKIVMPPKPDEKTAALWQQLADAQ  294 (306)
T ss_pred             -CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence             258999999999999999999999999999863

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.3e-43  Score=346.85  Aligned_cols=234  Identities=38%  Similarity=0.703  Sum_probs=208.7

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSA   83 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~~   83 (461)
                      ++++|||+||++||++||||.|++++|+++|++|++|||||||++||++||++|..+. +        ..+.||+++|..
T Consensus        55 At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~-~--------~~~g~~~~~~~~  125 (288)
T KOG0715|consen   55 ATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH-G--------EFGGNPFDVFLE  125 (288)
T ss_pred             CCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc-c--------cccCCccchHHH
Confidence            6889999999999999999999999999999999999999999999999999998761 1        112388999999


Q ss_pred             ccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcC
Q 012541           84 FFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACW  163 (461)
Q Consensus        84 ~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~  163 (461)
                      +|++.                 ..+...+.++++++.++|+|+..|+.+.+.+.....|.+|.|.|...+.....|..|.
T Consensus       126 ~~~~~-----------------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~  188 (288)
T KOG0715|consen  126 FFGGK-----------------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCS  188 (288)
T ss_pred             hhccc-----------------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhh
Confidence            88640                 0123455678899999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCC
Q 012541          164 GRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLA  243 (461)
Q Consensus       164 G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~  243 (461)
                      |+|.+......+|...    +|..|+|.|.++...|..|.|.|.+...+.+.|.+|+|+.++.+|++.+.|..       
T Consensus       189 ~~~~~~~~~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~-------  257 (288)
T KOG0715|consen  189 GRGLVSNPKEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND-------  257 (288)
T ss_pred             CcccccccccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-------
Confidence            9998776555555443    99999999999999999999999888999999999999999999999998764       


Q ss_pred             ccEEEEEEEEecccccccccceEEeeecCHHH
Q 012541          244 GDLFVALHVDEKQGIHRDGLNLFSKISVDYTE  275 (461)
Q Consensus       244 GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~e  275 (461)
                       ||+|.+.|.+++.|+|+|.|++++..|++++
T Consensus       258 -~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~  288 (288)
T KOG0715|consen  258 -DLFVRLIVAKSPSFRREGKDILYDAIISFTQ  288 (288)
T ss_pred             -eEEEEEEeccCcccccccCcccccccccccC
Confidence             9999999999999999999999999998764

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-42  Score=340.68  Aligned_cols=298  Identities=27%  Similarity=0.377  Sum_probs=228.5

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYS   82 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~   82 (461)
                      |+-++||+|||+||+|||||+|| +|.|.++|++|+.||||||||+||+.||+||++++......+.++..   -.++|+
T Consensus        28 Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~~~g~~---~~~~f~  104 (336)
T KOG0713|consen   28 ASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDGEGGGG---GNDIFS  104 (336)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccccccCCc---ccchHH
Confidence            67899999999999999999999 59999999999999999999999999999999999753211111111   157788


Q ss_pred             cccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCc
Q 012541           83 AFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKAC  162 (461)
Q Consensus        83 ~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C  162 (461)
                      .||+..+..+++.       .. .....+|.++...++.++++.|.|...+..-.+.+.|.. .|+-      ...|.  
T Consensus       105 ~~f~dfg~~~~g~-------~~-~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~g~~------~~~~~--  167 (336)
T KOG0713|consen  105 AFFGDFGVTVGGN-------PL-EEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-PGTR------KCNCR--  167 (336)
T ss_pred             HhhcccccccCCC-------cc-cCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-Cccc------ccCCh--
Confidence            8887543222221       11 122678899999999999999999887766655555432 2111      11111  


Q ss_pred             CCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCC
Q 012541          163 WGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSL  242 (461)
Q Consensus       163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~  242 (461)
                          ..+.+++...|.+++.+            ...|..|.+.+.......+++.+..|+..|....+..+|.+.. -+.
T Consensus       168 ----~~~~~~~~~~g~~~~~q------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~~  230 (336)
T KOG0713|consen  168 ----LEMFTQQEGPGRFQMLQ------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHI-DGV  230 (336)
T ss_pred             ----hhheeeccCCChhhhhh------------hhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcce-ecc
Confidence                11122222333333221            1235555566677778999999999999999999999998764 468


Q ss_pred             CccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCCCCCCCCC
Q 012541          243 AGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVR  321 (461)
Q Consensus       243 ~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~r  321 (461)
                      +||+++.+...+|+.|.|+++||++++.|++.+++.|...++.++|+. +.++...++-|+..++..++|||..+.....
T Consensus       231 ~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~~~~~~~~~l~~~~~~  310 (336)
T KOG0713|consen  231 PGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTRKKGEGMPLLKNRNEK  310 (336)
T ss_pred             cCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhhhhhccchhhhccchh
Confidence            999999999999999999999999999999999999999999999996 3555566799999999999999988777788


Q ss_pred             ccEEEEEEEEcCCC-CCh
Q 012541          322 GDHLFIVNVLIPKD-ISD  338 (461)
Q Consensus       322 GDL~V~f~V~~P~~-ls~  338 (461)
                      |++|++|.+.+|.+ ++.
T Consensus       311 ~~~~~t~~~~~~~~~~~~  328 (336)
T KOG0713|consen  311 GNLYVTFDVEFPKSSLSD  328 (336)
T ss_pred             cceeEEecccCcccccch
Confidence            99999999999965 554

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.97  E-value=2.6e-31  Score=283.88  Aligned_cols=161  Identities=16%  Similarity=0.197  Sum_probs=140.1

Q ss_pred             CcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCc
Q 012541          112 GLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD  191 (461)
Q Consensus       112 g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~  191 (461)
                      .-||++.+.|+|+|+|+|++|++++.|.+.|    |.|                                          
T Consensus       656 ~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G------------------------------------------  689 (871)
T TIGR03835       656 NVNLVYEEEVPQILFFNNQIKEIKYTRHTVD----GNT------------------------------------------  689 (871)
T ss_pred             ccceEEecccCHHHHhCCCeEEEEEEEeecc----CCC------------------------------------------
Confidence            3477889999999999999999999886554    111                                          


Q ss_pred             cEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeeec
Q 012541          192 GKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISV  271 (461)
Q Consensus       192 G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I  271 (461)
                                   ...+...+.++|+||+|+++|++|+|+|+|+.+. ++ +|||||+|++++|+.|+|+|+|||+++.|
T Consensus       690 -------------~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegp-gg-~GDLyVvIkVKPHp~FrRdGdDL~~~v~I  754 (871)
T TIGR03835       690 -------------ESTTNEAITLEIQLPITSQLNISAIFKGFGHDFG-NG-CGDLKVVFKVIPSNFFQIKNDGLHVAALV  754 (871)
T ss_pred             -------------cceeeeeEEEEEecCCCCCCCCEEEeccccCCCC-CC-CCCEEEEEEEcCCCCeEEECCeEEEEEec
Confidence                         1113345799999999999999999999999863 33 49999999999999999999999999999


Q ss_pred             CHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEE-cCCC
Q 012541          272 DYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVL-IPKD  335 (461)
Q Consensus       272 sl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~-~P~~  335 (461)
                      +|.+||+|+++.|+||||++.|+||++++||++++|+|+|||...  +.||||||+|+|. ++++
T Consensus       755 SL~EALLGgtIeIpTLDGrVkLkIPpgTqpGqvLRIkGKGMP~~~--~~RGDLyV~f~V~~~~k~  817 (871)
T TIGR03835       755 DPLVAYNGGIIDVFGPNKLFNVRIPGGIKVNDQVIFKDLGLTKTK--YDKGSLIVHLYYSSVMKK  817 (871)
T ss_pred             CHHHHhcCCEEEeeCCCCCEEEeeCCCCCCCcEEEECCCCCCCCC--CCCCCEEEEEEEeecccc
Confidence            999999999999999999889999999999999999999999532  4689999999998 4543

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=4.7e-22  Score=196.22  Aligned_cols=251  Identities=27%  Similarity=0.393  Sum_probs=177.3

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCCh--hhHHHHHHHHHHHhhccccccccccccccccccccccc-CCC--CC---CCCC
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD-GLS--NT---SQGV   75 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~--~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~-~~~--~~---~~~~   75 (461)
                      ++..+|++||++||++||||+|+.+  .|+++|++|++|||||||+.||+.||+||++++.+... .+.  .+   ....
T Consensus        15 as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (306)
T KOG0714|consen   15 ASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFSSSFTSELFYFLFR   94 (306)
T ss_pred             ccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCCCCCCCCcceeccC
Confidence            6788999999999999999999976  77779999999999999999999999999977665211 111  11   1123


Q ss_pred             CcccccccccCCCCCCCCC------------C---CCCC---Ccccc----------cCCCCCCCcccccccccccceee
Q 012541           76 DPFELYSAFFGGSDGLFGG------------V---GEAG---GINFN----------FGNKGNFGLDIRYDLHLSFEESI  127 (461)
Q Consensus        76 d~~d~F~~~Fg~~~~~f~~------------~---g~~~---~~~~~----------~~~~~~~g~di~~~l~lslee~~  127 (461)
                      ++.+.|..|||........            .   +..+   ...+.          ......+...+...+.+++++.+
T Consensus        95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (306)
T KOG0714|consen   95 KPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPPVEHPLRVSLEDLY  174 (306)
T ss_pred             chhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCCccCCcceeHHHhc
Confidence            5566777788633211100            0   0000   00000          00011122224445555777777


Q ss_pred             cceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceE
Q 012541          128 FGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGE  207 (461)
Q Consensus       128 ~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~  207 (461)
                      .|+.+...+.+...=                                         .              ..    ...
T Consensus       175 ~~~~~~~~~~~~~~~-----------------------------------------~--------------~~----~~~  195 (306)
T KOG0714|consen  175 KGESKKMKISRQSFT-----------------------------------------S--------------NG----REG  195 (306)
T ss_pred             cccceeeeccccccc-----------------------------------------C--------------Cc----ccc
Confidence            777766665432110                                         0              00    001


Q ss_pred             EeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEe--eecCHHHHHcCCeeEEe
Q 012541          208 VQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK--ISVDYTEAILGTSMEVE  285 (461)
Q Consensus       208 v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~--~~Isl~eAllG~~i~V~  285 (461)
                      ......+.+.+.+++..|..+....+|+.... ..|-++++.+..++|+.|.|.++||...  ..|++.+|++|....++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~  274 (306)
T KOG0714|consen  196 SSRSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVP  274 (306)
T ss_pred             cCccceeEEeccCCcccccceeccccccccCC-cCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeee
Confidence            23357899999999999999999999987543 6788999999999999999999999999  99999999999999999


Q ss_pred             eeCCeE-EEEeC-CCCCCCCEEEEccCCCCC
Q 012541          286 TVEGMK-DLRIP-SGVQPGDTVKLQQMGVPD  314 (461)
Q Consensus       286 tldG~~-~l~Ip-~g~q~G~~~~l~g~G~P~  314 (461)
                      +++|.. .+.+. .-+.++...+++++|+|.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (306)
T KOG0714|consen  275 TLDGRSYSLSINKDLIEPGEEDVIPGEGLPC  305 (306)
T ss_pred             cccCccccCcccccccCCCceeeecCCCCCC
Confidence            999963 44444 568999999999999985

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=99.85  E-value=1.5e-21  Score=158.97  Aligned_cols=80  Identities=30%  Similarity=0.656  Sum_probs=70.5

Q ss_pred             ceEEeeecCHHHHHcCCeeEEeeeCC-eEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHH
Q 012541          264 NLFSKISVDYTEAILGTSMEVETVEG-MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERA  342 (461)
Q Consensus       264 DL~~~~~Isl~eAllG~~i~V~tldG-~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~  342 (461)
                      |||++++|+++||++|+++.|+|+|| .++|+||+++++|++++|+|+|||...+++.+|||||+|+|.+|++||++|++
T Consensus         1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~   80 (81)
T PF01556_consen    1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE   80 (81)
T ss_dssp             EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred             CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence            89999999999999999999999999 67999999999999999999999988876689999999999999999999987


Q ss_pred             H
Q 012541          343 L  343 (461)
Q Consensus       343 l  343 (461)
                      |
T Consensus        81 l   81 (81)
T PF01556_consen   81 L   81 (81)
T ss_dssp             H
T ss_pred             C
Confidence            6

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.67  E-value=2.9e-17  Score=180.25  Aligned_cols=61  Identities=30%  Similarity=0.453  Sum_probs=57.1

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG   63 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~   63 (461)
                      -+++.+||+|||+||++||||+|+++.|+++|++|++||+|||||++|+.||+||.+|+..
T Consensus       584 dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~  644 (1136)
T PTZ00341        584 NADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG  644 (1136)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence            4789999999999999999999997789999999999999999999999999999987653

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=5.6e-16  Score=146.08  Aligned_cols=56  Identities=46%  Similarity=0.640  Sum_probs=51.6

Q ss_pred             CCCChHHHHHHHHHHHHHhCCCCCCC-hh-hHHHHHHHHHHHhhcccccccccccccc
Q 012541            2 FVRMPRCRRSRPLTESLLYHPDINKS-PG-AEEKFKEISSAYEVLSDDEKRSVYDRFG   57 (461)
Q Consensus         2 ~~~~~~~Ir~Ayr~LA~kyHPD~N~~-~~-aeekFkeI~eAYEVLsD~~KR~~YD~~G   57 (461)
                      +-++.++|++|||+||++||||+|++ +. |+++|++|++||+||||+.+|+.||+++
T Consensus        16 ~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214          16 PNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            35789999999999999999999995 53 9999999999999999999999999984

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=4.6e-17  Score=156.68  Aligned_cols=59  Identities=44%  Similarity=0.702  Sum_probs=55.0

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCC-hhhHHHHHHHHHHHhhccccccccccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT   62 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~-~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~   62 (461)
                      +-.++|++|||+||++||||+|++ |++.+||+|||+||+|||||.||..||.||+.++.
T Consensus        43 at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~  102 (279)
T KOG0716|consen   43 ATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK  102 (279)
T ss_pred             cchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence            446789999999999999999996 99999999999999999999999999999998764

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=5.3e-17  Score=161.02  Aligned_cols=77  Identities=36%  Similarity=0.567  Sum_probs=66.4

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELY   81 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F   81 (461)
                      -+++++|++|||.+|++||||+|| ||.|.++|+++++||+||+|+++|+.||.+|..+....        ...++.++|
T Consensus        16 ~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~--------~~~d~~~~~   87 (296)
T KOG0691|consen   16 DATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ--------GREDQADGF   87 (296)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch--------hhhhHHHHH
Confidence            368899999999999999999999 69999999999999999999999999999998765432        123777888


Q ss_pred             ccccCC
Q 012541           82 SAFFGG   87 (461)
Q Consensus        82 ~~~Fg~   87 (461)
                      ...|++
T Consensus        88 r~~f~~   93 (296)
T KOG0691|consen   88 RKKFGS   93 (296)
T ss_pred             HHHhhh
Confidence            877753

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=2.3e-16  Score=160.85  Aligned_cols=61  Identities=34%  Similarity=0.468  Sum_probs=56.2

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhccccccccccccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE   64 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~   64 (461)
                      +++.+|+++||+||++||||+||+  ++|.++|+.|++||||||||+.|+-||.+-+.-|.+.
T Consensus        20 a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~   82 (508)
T KOG0717|consen   20 ADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK   82 (508)
T ss_pred             CCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence            688999999999999999999996  7899999999999999999999999999988666553

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=9e-16  Score=156.60  Aligned_cols=59  Identities=42%  Similarity=0.669  Sum_probs=55.2

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCC----hhhHHHHHHHHHHHhhccccccccccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKS----PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT   62 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~----~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~   62 (461)
                      ++-++|++|||++++-||||+.-|    +.||++|+.|.+||||||||.||++||.||+.|++
T Consensus        21 At~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen   21 ATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             cCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            577899999999999999999864    46999999999999999999999999999999998

>PHA03102 Small T antigen; Reviewed

Probab=99.55  E-value=3.3e-15  Score=135.06  Aligned_cols=71  Identities=27%  Similarity=0.254  Sum_probs=59.8

Q ss_pred             ChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCcccccccc
Q 012541            5 MPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAF   84 (461)
Q Consensus         5 ~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F~~~   84 (461)
                      +..+||+|||+||++||||+|++   +++|++|++||+||+|+.+|..||.+|........         ..|.++|..+
T Consensus        20 s~~eIKkAYr~la~~~HPDkgg~---~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~---------~~~~~~f~~~   87 (153)
T PHA03102         20 NLPLMRKAYLRKCLEFHPDKGGD---EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEE---------DVPSGYVGAT   87 (153)
T ss_pred             CHHHHHHHHHHHHHHHCcCCCch---hHHHHHHHHHHHHHhhHHHhccccccCCccccccc---------ccHHHHhhhh
Confidence            88999999999999999999854   57999999999999999999999999986543211         2377888888


Q ss_pred             cCC
Q 012541           85 FGG   87 (461)
Q Consensus        85 Fg~   87 (461)
                      ||+
T Consensus        88 fg~   90 (153)
T PHA03102         88 FGD   90 (153)
T ss_pred             cCC
Confidence            854

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=5.3e-15  Score=139.34  Aligned_cols=56  Identities=39%  Similarity=0.576  Sum_probs=52.1

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCC---hhhHHHHHHHHHHHhhcccccccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKS---PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA   59 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~---~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~   59 (461)
                      +++++||+||++||++||||+|++   .+|.+||+.++.||+||||.+||+.||+-|.-
T Consensus        26 a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i   84 (264)
T KOG0719|consen   26 ATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI   84 (264)
T ss_pred             CCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence            678999999999999999999973   57999999999999999999999999998864

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.52  E-value=1.7e-14  Score=112.90  Aligned_cols=65  Identities=48%  Similarity=0.999  Sum_probs=55.3

Q ss_pred             ccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEE-eeeccccCCce
Q 012541          142 CDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII-IDHCRRCGGNG  206 (461)
Q Consensus       142 C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i-~~~C~~C~G~g  206 (461)
                      |+.|+|+|++.+..+.+|+.|+|+|+++..++++++.+++.++|+.|+|+|++| .++|+.|+|+|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            899999999999999999999999999998899999999999999999999999 88999999975

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.50  E-value=1.2e-14  Score=156.93  Aligned_cols=60  Identities=35%  Similarity=0.525  Sum_probs=56.2

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT   62 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~   62 (461)
                      -++.++||+|||+||++||||+++++.|+++|++|++||+|||||.+|+.||+||.+++.
T Consensus        13 dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d   72 (871)
T TIGR03835        13 DADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD   72 (871)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence            367899999999999999999998888999999999999999999999999999988764

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=3.9e-14  Score=144.04  Aligned_cols=119  Identities=30%  Similarity=0.659  Sum_probs=93.1

Q ss_pred             eeeeccCCCCCCccccc-------ccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeee------------
Q 012541          138 CFETCDSCGGTGAKSSN-------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH------------  198 (461)
Q Consensus       138 r~~~C~~C~GsG~~~~~-------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~------------  198 (461)
                      ...+|++|+|+|.....       ...+|++|+|+|.++.            .+|++|+|.|.+....            
T Consensus       158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~------------~pC~~C~G~G~v~~~~~i~V~IPaGv~~  225 (371)
T COG0484         158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK------------DPCGKCKGKGRVKKKKSISVNIPAGVDD  225 (371)
T ss_pred             CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC------------CCCCCCCCCCeEeeeeEEEEECCCCCcc
Confidence            56789999999975332       4689999999999864            6899999999865541            


Q ss_pred             ------------------------------------------cc--------ccCCceEEee-cceEEEEeCCCCCCCCE
Q 012541          199 ------------------------------------------CR--------RCGGNGEVQS-KRSMKVVIPPGVSNGAT  227 (461)
Q Consensus       199 ------------------------------------------C~--------~C~G~g~v~~-~k~l~V~IP~Gv~~G~~  227 (461)
                                                                |.        ..++.-.+++ ...++|+||+|+++|++
T Consensus       226 g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~  305 (371)
T COG0484         226 GDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEV  305 (371)
T ss_pred             CCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcE
Confidence                                                      11        1144445554 44599999999999999


Q ss_pred             EEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEe
Q 012541          228 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK  268 (461)
Q Consensus       228 i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~  268 (461)
                      ++|+|+|.+..++...|||||+|+|..+..+......|+.+
T Consensus       306 ~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~  346 (371)
T COG0484         306 FRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEE  346 (371)
T ss_pred             EEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence            99999999987777789999999999998877666555444

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.49  E-value=1.7e-14  Score=111.71  Aligned_cols=52  Identities=42%  Similarity=0.526  Sum_probs=48.4

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCCh--hhHHHHHHHHHHHhhccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYD   54 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~--~aeekFkeI~eAYEVLsD~~KR~~YD   54 (461)
                      -++.++|++||++|+++||||+++..  .++++|++|++||++|+||.+|+.||
T Consensus        11 ~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen   11 DASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             TSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            36789999999999999999999864  49999999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.49  E-value=4.3e-14  Score=140.30  Aligned_cols=59  Identities=34%  Similarity=0.397  Sum_probs=52.7

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCC----hhhHHHHHHHHHHHhhcccccccccccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKS----PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG   63 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~----~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~   63 (461)
                      ++.++|.+|||+||.|||||--.+    +.||+||-+|..|-||||||+||++||+ |++.+..
T Consensus       406 AsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~  468 (504)
T KOG0624|consen  406 ASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDP  468 (504)
T ss_pred             ccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCCh
Confidence            688999999999999999996665    3599999999999999999999999998 7776654

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.42  E-value=2.2e-13  Score=140.95  Aligned_cols=67  Identities=27%  Similarity=0.476  Sum_probs=56.0

Q ss_pred             CCceEEee--cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEee
Q 012541          203 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI  269 (461)
Q Consensus       203 ~G~g~v~~--~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~  269 (461)
                      ++...+..  .+.++|.||+|+++|++|+|+|+|++...++.+|||||+|+|..|+.|++++.+|+.++
T Consensus       292 G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l  360 (369)
T PRK14282        292 GTTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL  360 (369)
T ss_pred             CCEEEEeCCCCcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            44444544  35799999999999999999999998654456899999999999999999999887664

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.41  E-value=3.2e-13  Score=139.49  Aligned_cols=119  Identities=26%  Similarity=0.614  Sum_probs=90.7

Q ss_pred             eeeccCCCCCCccccc---------ccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 012541          139 FETCDSCGGTGAKSSN---------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------  197 (461)
Q Consensus       139 ~~~C~~C~GsG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~------------  197 (461)
                      ...|+.|+|+|.....         ...+|+.|+|.|.+..            ..|+.|+|.|.+...            
T Consensus       165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~  232 (365)
T PRK14290        165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTVVVNEDISVKIPKGAT  232 (365)
T ss_pred             CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeEEEeeEEEEEECCCCC
Confidence            4578888888864321         2367888888887643            568888888875443            


Q ss_pred             ------------------------------------------------eccccCCceEEee-cceEEEEeCCCCCCCCEE
Q 012541          198 ------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGATM  228 (461)
Q Consensus       198 ------------------------------------------------~C~~C~G~g~v~~-~k~l~V~IP~Gv~~G~~i  228 (461)
                                                                      .=..|++...+.. ...++|.||+|+++|++|
T Consensus       233 ~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~i  312 (365)
T PRK14290        233 DNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVL  312 (365)
T ss_pred             CCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEE
Confidence                                                            0112245555554 457999999999999999


Q ss_pred             EEcccccCCCCCCCCccEEEEEEEEecccccccccceEEee
Q 012541          229 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI  269 (461)
Q Consensus       229 ~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~  269 (461)
                      +|+|+|++...+..+|||||+|+|..|+.|++++.+|+.++
T Consensus       313 ri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~  353 (365)
T PRK14290        313 KIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF  353 (365)
T ss_pred             EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            99999998665557899999999999999999999988764

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.38  E-value=4.4e-13  Score=138.95  Aligned_cols=67  Identities=19%  Similarity=0.332  Sum_probs=55.8

Q ss_pred             CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEee
Q 012541          203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI  269 (461)
Q Consensus       203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~  269 (461)
                      ++...+.. ...++|+||+|+++|++++|+|+|.+...+...|||||+|+|..|+.+++++.+|+.++
T Consensus       281 G~~~~i~tldG~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l  348 (377)
T PRK14298        281 GADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF  348 (377)
T ss_pred             CCeEEEecCCCCEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            55555544 34589999999999999999999998655556899999999999999999998887665

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.37  E-value=6.9e-13  Score=137.05  Aligned_cols=68  Identities=21%  Similarity=0.375  Sum_probs=56.4

Q ss_pred             CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeee
Q 012541          203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS  270 (461)
Q Consensus       203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~  270 (461)
                      ++...+.. ...++|.||+|+++|++|+|+|+|++...+..+|||||+|+|..|+.|.++..+|+..+.
T Consensus       280 G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~  348 (366)
T PRK14294        280 GAQIEVPTLEGERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA  348 (366)
T ss_pred             CCeEEEECCCCcEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence            55555554 345799999999999999999999986555578999999999999999999888776644

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.34  E-value=1.3e-12  Score=135.22  Aligned_cols=68  Identities=26%  Similarity=0.501  Sum_probs=56.3

Q ss_pred             CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeee
Q 012541          203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS  270 (461)
Q Consensus       203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~  270 (461)
                      ++...+.. ...++|.||+|+++|++++|+|+|.+...++..|||||+|+|..|+.|.+++.+|+.++.
T Consensus       278 G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~  346 (371)
T PRK10767        278 GGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEFE  346 (371)
T ss_pred             CCeEEEecCCCcEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence            44444533 346899999999999999999999986555678999999999999999999988877653

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.34  E-value=1.9e-12  Score=133.69  Aligned_cols=67  Identities=19%  Similarity=0.434  Sum_probs=54.8

Q ss_pred             CCceEEee--cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEee
Q 012541          203 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI  269 (461)
Q Consensus       203 ~G~g~v~~--~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~  269 (461)
                      ++.-.+..  .+.++|.||+|+++|++|+|+|+|++...+...|||||+|+|..|+.|.+++..|+..+
T Consensus       282 G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~l  350 (365)
T PRK14285        282 GKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLENL  350 (365)
T ss_pred             CCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            45555555  35799999999999999999999998655555799999999999999998887665543

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.32  E-value=1.9e-12  Score=98.73  Aligned_cols=46  Identities=50%  Similarity=0.574  Sum_probs=42.7

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCC--ChhhHHHHHHHHHHHhhcccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINK--SPGAEEKFKEISSAYEVLSDDEK   49 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~--~~~aeekFkeI~eAYEVLsD~~K   49 (461)
                      +++++|++||++|+++||||+++  .+.+++.|++|++||++|+||.+
T Consensus        13 ~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271       13 ASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            57899999999999999999998  57899999999999999999864

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=1.5e-12  Score=132.03  Aligned_cols=77  Identities=35%  Similarity=0.522  Sum_probs=62.6

Q ss_pred             CCCChHHHHHHHHHHHHHhCCCCCC-C-hhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCccc
Q 012541            2 FVRMPRCRRSRPLTESLLYHPDINK-S-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE   79 (461)
Q Consensus         2 ~~~~~~~Ir~Ayr~LA~kyHPD~N~-~-~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d   79 (461)
                      +.++.-+|++|||++|+.||||+|. + .+||.+|+||.+||.+||||.||..||. |.. +...    +++++++||++
T Consensus       383 ~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds-g~d-le~~----~~~~a~~dp~~  456 (486)
T KOG0550|consen  383 RNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS-GQD-LEEV----GSGGAGFDPFN  456 (486)
T ss_pred             hhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc-ccc-hhhh----cCCCcCcChhh
Confidence            3567789999999999999999997 3 7899999999999999999999999997 221 1111    12236789999


Q ss_pred             ccccc
Q 012541           80 LYSAF   84 (461)
Q Consensus        80 ~F~~~   84 (461)
                      +|..|
T Consensus       457 ~~~a~  461 (486)
T KOG0550|consen  457 IFRAF  461 (486)
T ss_pred             hhhhc
Confidence            98887

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.30  E-value=4.9e-12  Score=131.00  Aligned_cols=63  Identities=27%  Similarity=0.555  Sum_probs=50.2

Q ss_pred             CCceEEee--cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccce
Q 012541          203 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL  265 (461)
Q Consensus       203 ~G~g~v~~--~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL  265 (461)
                      ++...+..  .+.++|.||+|+++|++|+|+|+|++...+..+|||||+|+|..|..+.-+...|
T Consensus       281 G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~  345 (372)
T PRK14300        281 GGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQREL  345 (372)
T ss_pred             CCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence            45555555  3589999999999999999999999865556789999999999998765544433

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.30  E-value=3.8e-12  Score=131.83  Aligned_cols=66  Identities=26%  Similarity=0.403  Sum_probs=52.7

Q ss_pred             CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEe
Q 012541          203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK  268 (461)
Q Consensus       203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~  268 (461)
                      ++...+.. ...++|.||+|+++|++++|+|+|.+...++..|||||+|+|..|+.+..+..+|+..
T Consensus       280 G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~  346 (373)
T PRK14301        280 GDRIEVPTLDDPVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE  346 (373)
T ss_pred             CCeEEEecCCccEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            55555544 3459999999999999999999999876555689999999999998877666555444

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.29  E-value=4.6e-12  Score=132.01  Aligned_cols=66  Identities=24%  Similarity=0.497  Sum_probs=53.4

Q ss_pred             CCceEEee-c--ceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEe
Q 012541          203 GGNGEVQS-K--RSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK  268 (461)
Q Consensus       203 ~G~g~v~~-~--k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~  268 (461)
                      ++...+.. .  ..++|+||+|+++|++++|+|+|++...+..+|||||+|+|..++.++.+..+|+..
T Consensus       294 G~~~~v~tld~g~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~  362 (391)
T PRK14284        294 GMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQ  362 (391)
T ss_pred             CCeEEEeecCCCcEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence            55555544 2  679999999999999999999999865555789999999999998887777665544

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.29  E-value=5e-12  Score=130.84  Aligned_cols=67  Identities=24%  Similarity=0.419  Sum_probs=53.9

Q ss_pred             CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEee
Q 012541          203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI  269 (461)
Q Consensus       203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~  269 (461)
                      ++...+.. ...++|+||+|+++|++++|+|+|.+...++..|||||+|+|..|+.++++...|+..+
T Consensus       278 G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l  345 (371)
T PRK14287        278 GDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREF  345 (371)
T ss_pred             CCEEEEEcCCCCEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence            55555554 34589999999999999999999998655556899999999999998887776655443

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.29  E-value=6.4e-12  Score=130.40  Aligned_cols=61  Identities=25%  Similarity=0.456  Sum_probs=48.8

Q ss_pred             CCceEEee--cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEeccccccccc
Q 012541          203 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL  263 (461)
Q Consensus       203 ~G~g~v~~--~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~  263 (461)
                      ++...+..  .+.++|.||+|+++|++++|+|+|.+...++..|||||+|+|..+..+..+..
T Consensus       279 G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk  341 (378)
T PRK14278        279 GTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDI  341 (378)
T ss_pred             CCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHH
Confidence            55555554  46799999999999999999999998655566899999999998876544443

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.28  E-value=5.8e-12  Score=129.69  Aligned_cols=55  Identities=25%  Similarity=0.535  Sum_probs=47.9

Q ss_pred             ceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceE
Q 012541          212 RSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLF  266 (461)
Q Consensus       212 k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~  266 (461)
                      ..++|.||+|+++|++++|+|+|++...+..+|||||+|+|..++.++++..+++
T Consensus       293 G~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l  347 (354)
T TIGR02349       293 GDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL  347 (354)
T ss_pred             ceEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            4689999999999999999999998665557899999999999998887776554

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.27  E-value=5.6e-12  Score=94.32  Aligned_cols=44  Identities=50%  Similarity=0.613  Sum_probs=41.1

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCC-hhhHHHHHHHHHHHhhccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKS-PGAEEKFKEISSAYEVLSD   46 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~-~~aeekFkeI~eAYEVLsD   46 (461)
                      -.++++|++||++|+++||||++++ +.+++.|++|++||+||+|
T Consensus        11 ~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257          11 DASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            4688999999999999999999986 7899999999999999997

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.26  E-value=9.1e-12  Score=129.36  Aligned_cols=62  Identities=23%  Similarity=0.407  Sum_probs=48.8

Q ss_pred             CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccc
Q 012541          203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN  264 (461)
Q Consensus       203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~D  264 (461)
                      ++...+.. ...++|.||+|+++|++++|+|+|++...+..+|||||+|+|..+..+..+...
T Consensus       286 G~~~~v~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~  348 (380)
T PRK14276        286 GDTVEVPTVHGDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKE  348 (380)
T ss_pred             CCeEEEEcCCCcEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence            55555554 345899999999999999999999986555568999999999988765544433

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.25  E-value=1.3e-11  Score=127.62  Aligned_cols=116  Identities=29%  Similarity=0.547  Sum_probs=85.7

Q ss_pred             eeeeccCCCCCCcccc-----cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeee--------------
Q 012541          138 CFETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH--------------  198 (461)
Q Consensus       138 r~~~C~~C~GsG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~--------------  198 (461)
                      ....|+.|+|+|....     ....+|+.|.|+|.++.            ..|+.|+|.|.+....              
T Consensus       155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~  222 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TPCQACKGKTYILKDEEIDAIIPEGIDDQN  222 (369)
T ss_pred             CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------ccCccCCCcceEEEEEEEEEecCCCCCCCC
Confidence            3567999999996422     23468999999998753            5699999988764430              


Q ss_pred             -----------------------------------------------ccccCCceEEee--cceEEEEeCCCCCCCCEEE
Q 012541          199 -----------------------------------------------CRRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ  229 (461)
Q Consensus       199 -----------------------------------------------C~~C~G~g~v~~--~k~l~V~IP~Gv~~G~~i~  229 (461)
                                                                     =..|++.-.+..  .+.++|.||+|+++|++++
T Consensus       223 ~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~  302 (369)
T PRK14288        223 RMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFA  302 (369)
T ss_pred             EEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence                                                           112344444544  2468999999999999999


Q ss_pred             EcccccCCCCCCCCccEEEEEEEEecccccccccce
Q 012541          230 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL  265 (461)
Q Consensus       230 l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL  265 (461)
                      |+|+|.+...+...|||||+|+|..|+.+..+...+
T Consensus       303 i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~  338 (369)
T PRK14288        303 FRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQEL  338 (369)
T ss_pred             EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence            999999865444569999999999998776655443

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.25  E-value=1.1e-11  Score=129.38  Aligned_cols=113  Identities=29%  Similarity=0.497  Sum_probs=82.5

Q ss_pred             eeeccCCCCCCccccc---------ccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 012541          139 FETCDSCGGTGAKSSN---------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------  197 (461)
Q Consensus       139 ~~~C~~C~GsG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~------------  197 (461)
                      ...|+.|+|+|.....         ...+|+.|+|+|.++.            ..|+.|+|.|.+...            
T Consensus       179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~  246 (397)
T PRK14281        179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------------DRCPACYGEGIKQGEVTVKVTVPAGVQ  246 (397)
T ss_pred             CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------------CCCCCCCCCccEecceEEEEecCCCCC
Confidence            4679999999865321         2467999999998753            468888888875432            


Q ss_pred             --------------------------------------------------eccccCCceEEee-cceEEEEeCCCCCCCC
Q 012541          198 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA  226 (461)
Q Consensus       198 --------------------------------------------------~C~~C~G~g~v~~-~k~l~V~IP~Gv~~G~  226 (461)
                                                                        .-..|++...+.. ...++|+||+|+++|+
T Consensus       247 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G~  326 (397)
T PRK14281        247 DGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPET  326 (397)
T ss_pred             CCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCCc
Confidence                                                              0112255555554 4458999999999999


Q ss_pred             EEEEcccccCCCCCCCCccEEEEEEEEeccccccccc
Q 012541          227 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL  263 (461)
Q Consensus       227 ~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~  263 (461)
                      +++|+|+|.+...++..|||||+|+|..+..+..+..
T Consensus       327 ~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk  363 (397)
T PRK14281        327 MLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDK  363 (397)
T ss_pred             EEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHH
Confidence            9999999998655556899999999998876544443

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.24  E-value=1.3e-11  Score=127.88  Aligned_cols=64  Identities=25%  Similarity=0.378  Sum_probs=49.9

Q ss_pred             CCceEEee--cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceE
Q 012541          203 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLF  266 (461)
Q Consensus       203 ~G~g~v~~--~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~  266 (461)
                      ++...+..  .+.++|+||+|+++|++++|+|+|.+...+...|||||+|+|..+..+..+..+|+
T Consensus       286 G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l  351 (372)
T PRK14286        286 GAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELI  351 (372)
T ss_pred             CCEEEEeCCCCCEEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence            44444544  35699999999999999999999998655556799999999998877655554443

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.24  E-value=1.2e-11  Score=128.24  Aligned_cols=68  Identities=19%  Similarity=0.343  Sum_probs=55.2

Q ss_pred             cCCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCC-CCCccEEEEEEEEecccccccccceEEee
Q 012541          202 CGGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRR-SLAGDLFVALHVDEKQGIHRDGLNLFSKI  269 (461)
Q Consensus       202 C~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g-~~~GDL~V~i~v~~h~~f~R~G~DL~~~~  269 (461)
                      |+++-.+.. ...++|.||+|+++|++++|+|+|.+...+ +..|||||+|+|..|+.+++++.+|+..+
T Consensus       282 ~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l  351 (374)
T PRK14293        282 LGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL  351 (374)
T ss_pred             CCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            355555555 345899999999999999999999986443 35799999999999999999888877654

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.24  E-value=1.4e-11  Score=127.78  Aligned_cols=62  Identities=24%  Similarity=0.409  Sum_probs=48.3

Q ss_pred             CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccc
Q 012541          203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN  264 (461)
Q Consensus       203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~D  264 (461)
                      ++...+.. ...++|.||+|+++|++++|+|+|.+...+...|||||+|+|..+..+..+...
T Consensus       283 G~~~~i~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~  345 (376)
T PRK14280        283 GDEIEVPTLHGKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKE  345 (376)
T ss_pred             CCEEEEecCCceEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence            45555554 345899999999999999999999986555568999999999988765544433

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.24  E-value=1.5e-11  Score=128.06  Aligned_cols=112  Identities=26%  Similarity=0.561  Sum_probs=81.6

Q ss_pred             eeeccCCCCCCcccc-----cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeee---------------
Q 012541          139 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH---------------  198 (461)
Q Consensus       139 ~~~C~~C~GsG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~---------------  198 (461)
                      ...|+.|+|+|....     ....+|+.|+|+|.++.            ..|..|+|.|.+....               
T Consensus       190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~  257 (392)
T PRK14279        190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------DPCEECKGTGVTTRTRTINVRIPPGVEDGQR  257 (392)
T ss_pred             CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------CcCCCCCCCeEEEEeeeeEEEeCCCCCCCcE
Confidence            467999999987532     23578999999998754            5699999988764320               


Q ss_pred             -----------------------------------------------ccccCCceEEee-cceEEEEeCCCCCCCCEEEE
Q 012541          199 -----------------------------------------------CRRCGGNGEVQS-KRSMKVVIPPGVSNGATMQI  230 (461)
Q Consensus       199 -----------------------------------------------C~~C~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l  230 (461)
                                                                     =..|++...+.. ...++|+||+|+++|++|+|
T Consensus       258 i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~iri  337 (392)
T PRK14279        258 IRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILRV  337 (392)
T ss_pred             EEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEEE
Confidence                                                           111234444443 34589999999999999999


Q ss_pred             cccccCCCCCCCCccEEEEEEEEeccccccccc
Q 012541          231 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL  263 (461)
Q Consensus       231 ~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~  263 (461)
                      +|+|++. .++.+|||||+|+|..+..+..+..
T Consensus       338 ~g~G~p~-~~~~~GDL~I~~~v~~P~~Ls~~q~  369 (392)
T PRK14279        338 RGRGVPK-RSGGAGDLLVTVKVAVPPNLDGAAA  369 (392)
T ss_pred             CCCCCCC-CCCCCCCEEEEEEEECCCCCCHHHH
Confidence            9999985 3456899999999998876544433

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=9.6e-12  Score=116.58  Aligned_cols=60  Identities=27%  Similarity=0.428  Sum_probs=55.0

Q ss_pred             CCCChHHHHHHHHHHHHHhCCCCCCC-hhhHHHHHHHHHHHhhcccccccccccccccccc
Q 012541            2 FVRMPRCRRSRPLTESLLYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI   61 (461)
Q Consensus         2 ~~~~~~~Ir~Ayr~LA~kyHPD~N~~-~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~   61 (461)
                      +.++.+|||+|||.|.+|||||++|+ .+.|+.|..|+.||+.|+|++.|..|-.||+...
T Consensus       109 pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG  169 (230)
T KOG0721|consen  109 PGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG  169 (230)
T ss_pred             CCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence            46789999999999999999999997 6778889999999999999999999999998653

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.21  E-value=2.3e-11  Score=126.45  Aligned_cols=61  Identities=20%  Similarity=0.367  Sum_probs=48.1

Q ss_pred             CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEeccccccccc
Q 012541          203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL  263 (461)
Q Consensus       203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~  263 (461)
                      ++...+.. ...++|.||+|+++|++++|+|+|.+...++..|||||+|+|.-+..+..+..
T Consensus       288 G~~~~i~~ldg~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~  349 (380)
T PRK14297        288 GTEIKVPTVDGEVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQK  349 (380)
T ss_pred             CCcEEEEcCCCcEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHH
Confidence            44555554 34589999999999999999999998655566899999999998876544443

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.20  E-value=3.1e-11  Score=124.99  Aligned_cols=62  Identities=13%  Similarity=0.354  Sum_probs=47.3

Q ss_pred             CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCC-CCCCCccEEEEEEEEecccccccccc
Q 012541          203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDR-RRSLAGDLFVALHVDEKQGIHRDGLN  264 (461)
Q Consensus       203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~-~g~~~GDL~V~i~v~~h~~f~R~G~D  264 (461)
                      +++-.+.+ ...++|.||+|+++|++++|+|+|.+.. ..+..|||||+|+|.-+..+..+...
T Consensus       290 G~~~~i~tldG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~  353 (372)
T PRK14296        290 GNEIIIKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKE  353 (372)
T ss_pred             CCEEEeeCCCCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHH
Confidence            55555554 3458999999999999999999999733 23457999999999988765544433

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.20  E-value=2.6e-11  Score=126.31  Aligned_cols=59  Identities=27%  Similarity=0.401  Sum_probs=47.6

Q ss_pred             CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEeccccccc
Q 012541          203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRD  261 (461)
Q Consensus       203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~  261 (461)
                      ++...+.. ...++|.||+|+++|++++|+|+|.+...++.+|||||+|+|.-+.....+
T Consensus       294 G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~  353 (386)
T PRK14289        294 GGAVEVPTIDGKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKE  353 (386)
T ss_pred             CCeEEeecCCceEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHH
Confidence            55555555 456899999999999999999999986655678999999999987654433

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.20  E-value=3e-11  Score=125.79  Aligned_cols=62  Identities=24%  Similarity=0.437  Sum_probs=47.7

Q ss_pred             CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccc
Q 012541          203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN  264 (461)
Q Consensus       203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~D  264 (461)
                      ++...+.. ...++|.||+|+++|++++|+|+|.+...+...|||||+|+|..+..+.-+..+
T Consensus       295 G~~~~i~tldG~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~  357 (386)
T PRK14277        295 GGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKE  357 (386)
T ss_pred             CCEEEEEcCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHH
Confidence            44545544 345899999999999999999999986555567999999999988765444433

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.18  E-value=3.7e-11  Score=124.46  Aligned_cols=65  Identities=20%  Similarity=0.375  Sum_probs=51.2

Q ss_pred             CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEE
Q 012541          203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFS  267 (461)
Q Consensus       203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~  267 (461)
                      ++...+.. ....+|.||+|+++|++++|+|+|++...+..+|||||+|+|..|+.+..+...|+.
T Consensus       278 G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~  343 (371)
T PRK14292        278 GGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE  343 (371)
T ss_pred             CCeEEEECCCCCEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            44545553 334589999999999999999999987656678999999999999887766655443

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.18  E-value=4.4e-11  Score=124.52  Aligned_cols=114  Identities=27%  Similarity=0.568  Sum_probs=81.2

Q ss_pred             eeeccCCCCCCcccc-----cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEee----------------
Q 012541          139 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID----------------  197 (461)
Q Consensus       139 ~~~C~~C~GsG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~----------------  197 (461)
                      ...|+.|+|+|....     ....+|+.|+|+|.++.            ..|..|+|.|.+...                
T Consensus       183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~  250 (389)
T PRK14295        183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DPCLVCKGSGRAKSSRTMQVRIPAGVSDGQR  250 (389)
T ss_pred             CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cCCCCCCCCceEeeeeEEEEEeCCCCCCCCE
Confidence            357888888886422     23467888888887653            468888888765432                


Q ss_pred             ----------------------------------------------eccccCCceEEee--cceEEEEeCCCCCCCCEEE
Q 012541          198 ----------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ  229 (461)
Q Consensus       198 ----------------------------------------------~C~~C~G~g~v~~--~k~l~V~IP~Gv~~G~~i~  229 (461)
                                                                    .=..+++...+..  .+.++|.||+|+++|++|+
T Consensus       251 i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~ir  330 (389)
T PRK14295        251 IRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLR  330 (389)
T ss_pred             EEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEE
Confidence                                                          0111244545544  3479999999999999999


Q ss_pred             EcccccCCCCCCCCccEEEEEEEEecccccccccce
Q 012541          230 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL  265 (461)
Q Consensus       230 l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL  265 (461)
                      |+|+|.+. .++.+|||||+|+|.-+....-+...|
T Consensus       331 i~G~G~p~-~~~~~GDL~i~~~v~~P~~Ls~~qk~~  365 (389)
T PRK14295        331 VRGKGAVR-KDGTRGDLLVTVEVAVPKDLSGKAREA  365 (389)
T ss_pred             ECCCCcCC-CCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence            99999986 345689999999999887655444333

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.2e-11  Score=118.01  Aligned_cols=53  Identities=30%  Similarity=0.411  Sum_probs=49.8

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF   56 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~   56 (461)
                      ++..+|.+|||+||++||||+|+++++.+.|+.|++|||+|.|.+.|..||-+
T Consensus        45 a~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya   97 (329)
T KOG0722|consen   45 ANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA   97 (329)
T ss_pred             ccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence            35679999999999999999999999999999999999999999999999964

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.17  E-value=5.9e-11  Score=123.27  Aligned_cols=63  Identities=25%  Similarity=0.446  Sum_probs=48.3

Q ss_pred             CCceEEee-cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccce
Q 012541          203 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL  265 (461)
Q Consensus       203 ~G~g~v~~-~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL  265 (461)
                      ++...+.. ...++|.||+|+++|++++|+|+|.+...+...|||||+|+|..+.....+...|
T Consensus       286 G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~l  349 (378)
T PRK14283        286 GDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKEL  349 (378)
T ss_pred             CCeEEEEcCCceEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHH
Confidence            44444553 3478999999999999999999999865555689999999999886654444333

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.15  E-value=3.3e-11  Score=111.71  Aligned_cols=53  Identities=25%  Similarity=0.168  Sum_probs=46.6

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCC--h----hhHHHHHHHHHHHhhcccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKS--P----GAEEKFKEISSAYEVLSDDEKRSVYDR   55 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~--~----~aeekFkeI~eAYEVLsD~~KR~~YD~   55 (461)
                      -.++.+|+++|++|+++||||++.+  +    .|.++|++||+||+||+||.+|+.|+-
T Consensus        14 ~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll   72 (171)
T PRK05014         14 DIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL   72 (171)
T ss_pred             CCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence            3578999999999999999999753  2    267799999999999999999999984

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.14  E-value=8.7e-11  Score=123.20  Aligned_cols=58  Identities=26%  Similarity=0.293  Sum_probs=45.7

Q ss_pred             cCCceEEee--cceEEEEeCCC--CCCCCEEEEcccccCCCCC-CCCccEEEEEEEEec--cccc
Q 012541          202 CGGNGEVQS--KRSMKVVIPPG--VSNGATMQIRGEGNFDRRR-SLAGDLFVALHVDEK--QGIH  259 (461)
Q Consensus       202 C~G~g~v~~--~k~l~V~IP~G--v~~G~~i~l~G~G~~~~~g-~~~GDL~V~i~v~~h--~~f~  259 (461)
                      |++.-.+..  .+.++|+||+|  +++|++++|+|+|.+...+ +..|||||+|+|.-+  ..+.
T Consensus       289 lG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls  353 (421)
T PTZ00037        289 TGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFT  353 (421)
T ss_pred             cCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCC
Confidence            456655554  34699999999  9999999999999985443 357999999999987  5443

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.13  E-value=4.1e-11  Score=111.10  Aligned_cols=54  Identities=24%  Similarity=0.195  Sum_probs=47.2

Q ss_pred             CCCChHHHHHHHHHHHHHhCCCCCCC-h-----hhHHHHHHHHHHHhhcccccccccccc
Q 012541            2 FVRMPRCRRSRPLTESLLYHPDINKS-P-----GAEEKFKEISSAYEVLSDDEKRSVYDR   55 (461)
Q Consensus         2 ~~~~~~~Ir~Ayr~LA~kyHPD~N~~-~-----~aeekFkeI~eAYEVLsD~~KR~~YD~   55 (461)
                      |-..+.+|+++||+|+++||||++.. +     .+.++|+.||+||+||+||.+|+.|+-
T Consensus        16 f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294         16 FRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            34568999999999999999999863 2     266789999999999999999999995

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.13  E-value=4.9e-11  Score=109.08  Aligned_cols=53  Identities=25%  Similarity=0.202  Sum_probs=46.3

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCCh------hhHHHHHHHHHHHhhccccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDRF   56 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~------~aeekFkeI~eAYEVLsD~~KR~~YD~~   56 (461)
                      -.+++|+++|++|+++||||+.+..      .+.++|+.||+||+||+||.+|+.|+--
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~   61 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS   61 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            4578999999999999999985421      2778999999999999999999999863

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.12  E-value=4.6e-11  Score=110.19  Aligned_cols=53  Identities=25%  Similarity=0.240  Sum_probs=45.9

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCCh----hhHHHHHHHHHHHhhcccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSP----GAEEKFKEISSAYEVLSDDEKRSVYDR   55 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~----~aeekFkeI~eAYEVLsD~~KR~~YD~   55 (461)
                      -.++.+|++||++|+++||||+++++    .+.+.|..||+||+||+||.+|+.|+-
T Consensus        15 ~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL   71 (166)
T PRK01356         15 NIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML   71 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            35789999999999999999998742    234568899999999999999999976

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.12  E-value=2.4e-10  Score=118.80  Aligned_cols=54  Identities=35%  Similarity=0.536  Sum_probs=44.4

Q ss_pred             CCceEEee--cceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecc
Q 012541          203 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ  256 (461)
Q Consensus       203 ~G~g~v~~--~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~  256 (461)
                      ++...+..  .+.++|.||+|+++|++|+|+|+|++...+..+|||||+|+|..+.
T Consensus       291 G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~  346 (382)
T PRK14291        291 GTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK  346 (382)
T ss_pred             CCEEEEecCCCCEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence            44444544  3569999999999999999999999866555689999999999775

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.08  E-value=1e-10  Score=108.76  Aligned_cols=53  Identities=23%  Similarity=0.119  Sum_probs=45.4

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCC-hhh-----HHHHHHHHHHHhhcccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKS-PGA-----EEKFKEISSAYEVLSDDEKRSVYDR   55 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~-~~a-----eekFkeI~eAYEVLsD~~KR~~YD~   55 (461)
                      -..+.+|+++|++|+++||||+++. +++     .++++.||+||++|+||.+|+.|+-
T Consensus        19 ~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578         19 ALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            3578999999999999999999863 333     3456899999999999999999994

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=4.7e-10  Score=115.27  Aligned_cols=53  Identities=36%  Similarity=0.473  Sum_probs=50.2

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF   56 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~   56 (461)
                      .|-.+||++||+||+--|||||..+.|+|-||.++.|||||+|++||+.||.-
T Consensus       247 ~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e  299 (490)
T KOG0720|consen  247 CSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE  299 (490)
T ss_pred             CCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence            36689999999999999999999999999999999999999999999999973

>PHA02624 large T antigen; Provisional

Probab=98.89  E-value=1.1e-09  Score=117.67  Aligned_cols=47  Identities=30%  Similarity=0.351  Sum_probs=43.7

Q ss_pred             ChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccc
Q 012541            5 MPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYD   54 (461)
Q Consensus         5 ~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD   54 (461)
                      +..+||+|||+||++||||++.   ++++|++|++||++|+|+.+|..|+
T Consensus        26 s~~eIKkAYRkLAkkyHPDKgG---deekfk~Ln~AYevL~d~~k~~r~~   72 (647)
T PHA02624         26 NLPLMRKAYLRKCKEYHPDKGG---DEEKMKRLNSLYKKLQEGVKSARQS   72 (647)
T ss_pred             CHHHHHHHHHHHHHHHCcCCCC---cHHHHHHHHHHHHHHhcHHHhhhcc
Confidence            7899999999999999999974   5689999999999999999999993

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=98.84  E-value=3e-09  Score=91.77  Aligned_cols=40  Identities=20%  Similarity=0.161  Sum_probs=35.4

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLS   45 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLs   45 (461)
                      -++.++|++|||+||++||||++   ++.+.|++|++|||||.
T Consensus        76 ~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         76 TASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence            36789999999999999999986   34578999999999994

>PRK14299 chaperone protein DnaJ; Provisional

Probab=98.83  E-value=9.5e-09  Score=103.19  Aligned_cols=72  Identities=29%  Similarity=0.452  Sum_probs=64.0

Q ss_pred             ccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCC
Q 012541          258 IHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDI  336 (461)
Q Consensus       258 f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~l  336 (461)
                      +.|+|.||++++.|||.||++|+++.| +++|. ++|+||+|+++|++++++|+|++.       |||||+|+|+-+..+
T Consensus       125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~~f  196 (291)
T PRK14299        125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG-------GDLYLVVRLLPHPVF  196 (291)
T ss_pred             CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC-------CCEEEEEEEcCCCCe
Confidence            357899999999999999999999998 78884 689999999999999999999862       999999999876654


Q ss_pred             C
Q 012541          337 S  337 (461)
Q Consensus       337 s  337 (461)
                      .
T Consensus       197 ~  197 (291)
T PRK14299        197 R  197 (291)
T ss_pred             E
Confidence            3

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=98.80  E-value=8.6e-09  Score=88.33  Aligned_cols=61  Identities=36%  Similarity=0.760  Sum_probs=50.1

Q ss_pred             eeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEee
Q 012541          138 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQS  210 (461)
Q Consensus       138 r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~  210 (461)
                      ..+.|..|+|+|..      +|+.|+|+|.+...+   .+.+++..+|+.|+|+|+.   .|..|.|+|++..
T Consensus        40 ~~v~C~~C~GsG~~------~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~  100 (111)
T PLN03165         40 NTQPCFPCSGTGAQ------VCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR  100 (111)
T ss_pred             cCCCCCCCCCCCCc------CCCCCcCcCeEEEEe---CCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence            45689999999983      899999999987543   2345667899999999985   4999999998754

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=98.76  E-value=5.3e-09  Score=85.12  Aligned_cols=49  Identities=29%  Similarity=0.590  Sum_probs=38.2

Q ss_pred             ceEEEEeCCCCCCCCEEEEcccccCCCCCC-CCccEEEEEEEEecccccc
Q 012541          212 RSMKVVIPPGVSNGATMQIRGEGNFDRRRS-LAGDLFVALHVDEKQGIHR  260 (461)
Q Consensus       212 k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~-~~GDL~V~i~v~~h~~f~R  260 (461)
                      +.++|.||+|+++|++++|+|+|.+...+. ..|||||+++|.-+..+..
T Consensus        27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~   76 (81)
T PF01556_consen   27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSP   76 (81)
T ss_dssp             -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSH
T ss_pred             CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence            578999999999999999999999765554 7999999999997776553

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=98.61  E-value=1.2e-07  Score=96.03  Aligned_cols=74  Identities=22%  Similarity=0.464  Sum_probs=61.3

Q ss_pred             ccccceEEeeecCHHHHHcCCeeEE----eeeC--C--------eEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEE
Q 012541          260 RDGLNLFSKISVDYTEAILGTSMEV----ETVE--G--------MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHL  325 (461)
Q Consensus       260 R~G~DL~~~~~Isl~eAllG~~i~V----~tld--G--------~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~  325 (461)
                      +.|.||++++.|+|.||+.|+...|    ++++  |        .++|+||+|+++|++++++|+|+|...+ ..+||||
T Consensus       115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~  193 (306)
T PRK10266        115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENG-GPNGDLW  193 (306)
T ss_pred             CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCC-CCCccEE
Confidence            4688999999999999999996544    4444  3        3578899999999999999999996543 4689999


Q ss_pred             EEEEEEcCCC
Q 012541          326 FIVNVLIPKD  335 (461)
Q Consensus       326 V~f~V~~P~~  335 (461)
                      |+|+|. |..
T Consensus       194 v~i~v~-ph~  202 (306)
T PRK10266        194 LVIHIA-PHP  202 (306)
T ss_pred             EEEEEc-CCC
Confidence            999999 754

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.47  E-value=6.8e-08  Score=99.07  Aligned_cols=58  Identities=31%  Similarity=0.483  Sum_probs=52.3

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCC------hhhHHHHHHHHHHHhhcccccccccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKS------PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI   61 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~------~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~   61 (461)
                      .|-++||++||+|.+|||||+-+.      .+.||++++|+.||+.|+|+..|+.|=.||....
T Consensus       110 ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~  173 (610)
T COG5407         110 TSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS  173 (610)
T ss_pred             CcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence            577899999999999999998763      4689999999999999999999999999997643

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=1.1e-07  Score=105.10  Aligned_cols=39  Identities=36%  Similarity=0.534  Sum_probs=36.5

Q ss_pred             ChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcc
Q 012541            5 MPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLS   45 (461)
Q Consensus         5 ~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLs   45 (461)
                      -|.+||++|++||+|||||+||  +-.|+|..++.|||.|+
T Consensus      1298 ~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1298 KPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLS 1336 (2235)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHH
Confidence            4789999999999999999995  77899999999999999

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=7.2e-07  Score=90.18  Aligned_cols=56  Identities=30%  Similarity=0.481  Sum_probs=46.2

Q ss_pred             cccCCceEEee--cceEEEEeCCC--CCCCCEEEEcccccCCCCCCCCccEEEEEEEEecc
Q 012541          200 RRCGGNGEVQS--KRSMKVVIPPG--VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ  256 (461)
Q Consensus       200 ~~C~G~g~v~~--~k~l~V~IP~G--v~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~  256 (461)
                      ..|.+...+.+  .+.+++.++||  +.+|+++++.|+|++..... .|||||.+.|+.++
T Consensus       265 al~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~  324 (337)
T KOG0712|consen  265 ALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK  324 (337)
T ss_pred             ccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence            34555555543  57899999999  99999999999999976555 99999999999876

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.36  E-value=4e-07  Score=84.57  Aligned_cols=52  Identities=25%  Similarity=0.167  Sum_probs=43.5

Q ss_pred             CCCChHHHHHHHHHHHHHhCCCCCCCh------hhHHHHHHHHHHHhhcccccccccc
Q 012541            2 FVRMPRCRRSRPLTESLLYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVY   53 (461)
Q Consensus         2 ~~~~~~~Ir~Ayr~LA~kyHPD~N~~~------~aeekFkeI~eAYEVLsD~~KR~~Y   53 (461)
                      |--.+..+++.|++|.+++|||+....      -|.+.=..||+||.+|+||-+|+.|
T Consensus        14 F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~Y   71 (173)
T PRK01773         14 FQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEA   71 (173)
T ss_pred             CCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHH
Confidence            345688999999999999999987532      2445567999999999999999999

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=1.1e-06  Score=85.11  Aligned_cols=54  Identities=33%  Similarity=0.411  Sum_probs=47.7

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC---ChhhHHHHHHHHHHHhhccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK---SPGAEEKFKEISSAYEVLSDDEKRSVYDRF   56 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~---~~~aeekFkeI~eAYEVLsD~~KR~~YD~~   56 (461)
                      -+.|.+|.+|+++...+||||+..   +.+..+-|+-|+.|||||+|+.+|.+||.-
T Consensus        57 ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~  113 (379)
T COG5269          57 KAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN  113 (379)
T ss_pred             CCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence            356889999999999999999863   356678899999999999999999999974

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=98.15  E-value=1.8e-06  Score=80.77  Aligned_cols=50  Identities=26%  Similarity=0.602  Sum_probs=45.2

Q ss_pred             eeecCCCCCCccEEEe--eeccccCCceEEeecceEEEEeCCCCCCCCEEEEc
Q 012541          181 QVSTCSKCGGDGKIII--DHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR  231 (461)
Q Consensus       181 ~~~~C~~C~G~G~~i~--~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~  231 (461)
                      ...+|+.|+|+|+++.  .+|+.|+|+|++.....+.+++ .|+.+|++|++.
T Consensus        98 ~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~  149 (186)
T TIGR02642        98 NSCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK  149 (186)
T ss_pred             cCCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence            3578999999999997  5799999999999999999999 999999999875

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.53  E-value=6.3e-05  Score=80.00  Aligned_cols=70  Identities=33%  Similarity=0.783  Sum_probs=42.9

Q ss_pred             eeccCCCCCCcccccccccCCCcCCccEEEEee--------ecCCcceee-eecCCCCCCccEEEe-eeccccCCceEEe
Q 012541          140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQ--------RTPFGLISQ-VSTCSKCGGDGKIII-DHCRRCGGNGEVQ  209 (461)
Q Consensus       140 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~--------~~~~g~~~~-~~~C~~C~G~G~~i~-~~C~~C~G~g~v~  209 (461)
                      ..|+.|+|+|...- ....|+.|+|+|..-...        +..+-.+.. ..+|+.|+|+|.+.- ..|+.|+|+|.+.
T Consensus         3 ~~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~   81 (715)
T COG1107           3 KKCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL   81 (715)
T ss_pred             ccccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence            46888888876543 346788888888762111        001111222 347888888887654 4588888887664


Q ss_pred             e
Q 012541          210 S  210 (461)
Q Consensus       210 ~  210 (461)
                      .
T Consensus        82 ~   82 (715)
T COG1107          82 T   82 (715)
T ss_pred             e
Confidence            4

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.45  E-value=7.4e-05  Score=58.39  Aligned_cols=43  Identities=33%  Similarity=0.848  Sum_probs=31.0

Q ss_pred             eeeccCCCCCCcccc---------cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 012541          139 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG  192 (461)
Q Consensus       139 ~~~C~~C~GsG~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G  192 (461)
                      ...|+.|+|+|....         ....+|+.|+|+|.++ .          ..+|+.|+|.|
T Consensus        15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~----------~~~C~~C~G~g   66 (66)
T PF00684_consen   15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E----------KDPCKTCKGSG   66 (66)
T ss_dssp             -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T----------SSB-SSSTTSS
T ss_pred             CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C----------CCCCCCCCCcC
Confidence            458999999998743         2568899999999986 1          26899999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.00014  Score=67.89  Aligned_cols=49  Identities=29%  Similarity=0.386  Sum_probs=43.3

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSV   52 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~   52 (461)
                      -+-++|++.||+|.+--|||+|+|  +.|..-|--+..||..|-|+.-|+.
T Consensus        65 v~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr  115 (250)
T KOG1150|consen   65 VTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR  115 (250)
T ss_pred             CCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            356899999999999999999995  6789999999999999999985543

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00022  Score=67.96  Aligned_cols=44  Identities=20%  Similarity=0.252  Sum_probs=39.0

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHh-hcccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYE-VLSDD   47 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYE-VLsD~   47 (461)
                      ++..++|.||++||++||||-..+....++|..|-+||. ||+..
T Consensus        59 ~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   59 ADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             CchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence            466789999999999999998887778899999999998 99753

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.84  E-value=0.0012  Score=70.67  Aligned_cols=48  Identities=38%  Similarity=0.794  Sum_probs=36.2

Q ss_pred             eeeeccCCCCCCccccc------------------ccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEe
Q 012541          138 CFETCDSCGGTGAKSSN------------------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII  196 (461)
Q Consensus       138 r~~~C~~C~GsG~~~~~------------------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~  196 (461)
                      ....|+.|+|+|....-                  .-..|+.|+|.|.+..           ..+|+.|+|+|++.+
T Consensus        17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v-----------~~~c~~c~G~gkv~~   82 (715)
T COG1107          17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV-----------YDTCPECGGTGKVLT   82 (715)
T ss_pred             eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE-----------EeecccCCCceeEEe
Confidence            35679999999975321                  2347999999998754           268999999998765

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.56  E-value=0.0018  Score=55.82  Aligned_cols=41  Identities=32%  Similarity=0.748  Sum_probs=32.6

Q ss_pred             eccCCCCCCcccc------cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEe
Q 012541          141 TCDSCGGTGAKSS------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII  196 (461)
Q Consensus       141 ~C~~C~GsG~~~~------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~  196 (461)
                      .|+.|+|+|....      .....|+.|+|+|.+               .|..|+|.|.+.+
T Consensus        54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---------------~C~~C~G~G~~~~  100 (111)
T PLN03165         54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---------------TCTTCQGSGIQPR  100 (111)
T ss_pred             CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---------------eCCCCCCCEEEee
Confidence            8999999997532      125689999999963               3999999998765

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.0063  Score=60.74  Aligned_cols=30  Identities=33%  Similarity=0.854  Sum_probs=16.3

Q ss_pred             cCCCCCCccEEEeeeccccCCceEEeecceEEE
Q 012541          184 TCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKV  216 (461)
Q Consensus       184 ~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V  216 (461)
                      .|++|.|.|.   .+|.+|.|.|.+..-..+.|
T Consensus       247 ~C~tC~grG~---k~C~TC~gtgsll~~t~~vV  276 (406)
T KOG2813|consen  247 ECHTCKGRGK---KPCTTCSGTGSLLNYTRIVV  276 (406)
T ss_pred             cCCcccCCCC---cccccccCccceeeeEEEEE
Confidence            3445555443   35777777776655444433

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.68  E-value=0.0085  Score=56.29  Aligned_cols=30  Identities=30%  Similarity=0.643  Sum_probs=13.1

Q ss_pred             eeeccCCCCCCcccccccccCCCcCCccEEE
Q 012541          139 FETCDSCGGTGAKSSNCIQSCKACWGRGGVL  169 (461)
Q Consensus       139 ~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~  169 (461)
                      ...|+.|+|+|...... ..|+.|+|+|++.
T Consensus        99 ~~~C~~C~G~G~~i~~~-~~C~~C~G~G~v~  128 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQ-RECDTCAGTGRFR  128 (186)
T ss_pred             CCcCCCCCCeeEEecCC-CCCCCCCCccEEe
Confidence            44455555555432211 3444444444443

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.0069  Score=56.40  Aligned_cols=49  Identities=24%  Similarity=0.245  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCh------hhHHHHHHHHHHHhhcccccccccccc
Q 012541            7 RCRRSRPLTESLLYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR   55 (461)
Q Consensus         7 ~~Ir~Ayr~LA~kyHPD~N~~~------~aeekFkeI~eAYEVLsD~~KR~~YD~   55 (461)
                      +.+...|+.++++||||+....      .+-+++.+++.||.+|-||-+|++|=.
T Consensus        18 ~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l   72 (174)
T COG1076          18 DALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL   72 (174)
T ss_pred             hHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            3567889999999999988632      134579999999999999999999854

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.80  E-value=0.044  Score=46.50  Aligned_cols=41  Identities=22%  Similarity=0.166  Sum_probs=34.3

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDD   47 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~   47 (461)
                      .-++.||+|+|+.=.--|||+..+|=-..   +|||||++|...
T Consensus        68 ~~k~KikeaHrriM~~NHPD~GGSPYlAs---KINEAKdlLe~~  108 (112)
T KOG0723|consen   68 LDKDKIKEAHRRIMLANHPDRGGSPYLAS---KINEAKDLLEGT  108 (112)
T ss_pred             ccHHHHHHHHHHHHHcCCCcCCCCHHHHH---HHHHHHHHHhcc
Confidence            45789999999999999999988775443   499999999754

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.70  E-value=0.016  Score=57.91  Aligned_cols=59  Identities=31%  Similarity=0.691  Sum_probs=42.6

Q ss_pred             eeeccCCCCCCcccc--cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEe
Q 012541          139 FETCDSCGGTGAKSS--NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQ  209 (461)
Q Consensus       139 ~~~C~~C~GsG~~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~  209 (461)
                      ..+|+.|+|+|...-  ..+..|+.|-|   +..      -...+-..|..|+|+|+   ..|.+|.|+|..+
T Consensus       198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G---~~~------~k~gt~~~C~~C~G~G~---~~C~tC~grG~k~  258 (406)
T KOG2813|consen  198 AMVCHGCSGSGSNSYGIGTPMHCMSCTG---VPP------PKIGTHDLCYMCHGRGI---KECHTCKGRGKKP  258 (406)
T ss_pred             ceeccCcCCCCccccccCcceecccccC---CCC------CCCCccchhhhccCCCc---ccCCcccCCCCcc
Confidence            568999999996322  35678999988   111      01223467999999996   5799999999875

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=94.32  E-value=0.033  Score=50.39  Aligned_cols=49  Identities=29%  Similarity=0.319  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHHHHHhCCCCC--CC----hhhHHHHHHHHHHHhhccccccccccc
Q 012541            6 PRCRRSRPLTESLLYHPDIN--KS----PGAEEKFKEISSAYEVLSDDEKRSVYD   54 (461)
Q Consensus         6 ~~~Ir~Ayr~LA~kyHPD~N--~~----~~aeekFkeI~eAYEVLsD~~KR~~YD   54 (461)
                      |..+.--|.-..++.|||+-  +.    .-|.+.=.++|+||.+|.||-+|+.|=
T Consensus        24 p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi   78 (168)
T KOG3192|consen   24 PDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL   78 (168)
T ss_pred             cchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            44445577888899999973  21    347788999999999999999999994

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=93.87  E-value=0.052  Score=55.57  Aligned_cols=56  Identities=30%  Similarity=0.300  Sum_probs=47.3

Q ss_pred             CCCCChHHHHHHHHHHHHHhCCCCCC-----ChhhHHHHHHHHHHHhhccccccccccccc
Q 012541            1 MFVRMPRCRRSRPLTESLLYHPDINK-----SPGAEEKFKEISSAYEVLSDDEKRSVYDRF   56 (461)
Q Consensus         1 ~~~~~~~~Ir~Ayr~LA~kyHPD~N~-----~~~aeekFkeI~eAYEVLsD~~KR~~YD~~   56 (461)
                      |.+++...|+.+|++.+.++|||+-.     .-..++-|++|.+||+||++.++|..+|..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~   61 (335)
T KOG0724|consen    1 RGLASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW   61 (335)
T ss_pred             CCcccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence            67889999999999999999999763     225677899999999999998877776653

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=87.31  E-value=0.29  Score=49.35  Aligned_cols=58  Identities=34%  Similarity=0.744  Sum_probs=38.5

Q ss_pred             eecceeeeeEEeeeeeccCCCCCCcccc-----cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEe
Q 012541          126 SIFGGQRGIEVSCFETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII  196 (461)
Q Consensus       126 ~~~G~~k~i~~~r~~~C~~C~GsG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~  196 (461)
                      ..+|.. .........|..|.|+|....     -...+|..|.|.|.+..            ..|..|.|.|.+..
T Consensus       169 t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~------------~~c~~~~g~~~v~~  231 (288)
T KOG0715|consen  169 TCFGSG-AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR------------DNCQACSGAGQVRR  231 (288)
T ss_pred             cccCcC-cccccccccchhhhCcccccccccCCcceeecccccccceecc------------chHHHhhcchhhhh
Confidence            334433 444556778999999993222     12237999999998764            34999999995544

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=82.63  E-value=1.3  Score=43.99  Aligned_cols=45  Identities=29%  Similarity=0.621  Sum_probs=23.4

Q ss_pred             eeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEE
Q 012541          140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI  194 (461)
Q Consensus       140 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  194 (461)
                      -.|..|.|.+.      ..|..|+|+=.+...    +.......+|..|+=.|-+
T Consensus       230 ~~C~~CGg~rF------lpC~~C~GS~kv~~~----~~~~~~~~rC~~CNENGLv  274 (281)
T KOG2824|consen  230 GVCESCGGARF------LPCSNCHGSCKVHEE----EEDDGGVLRCLECNENGLV  274 (281)
T ss_pred             CcCCCcCCcce------EecCCCCCceeeeee----ccCCCcEEECcccCCCCce
Confidence            35666666554      346666666655432    1111223456666666654

>TIGR00340 zpr1_rel ZPR1-related zinc finger protein

Probab=80.98  E-value=8.4  Score=35.59  Aligned_cols=26  Identities=12%  Similarity=0.387  Sum_probs=18.9

Q ss_pred             CeeEEeeeCCeEEEEeCCCC-CCCCEEEEcc
Q 012541          280 TSMEVETVEGMKDLRIPSGV-QPGDTVKLQQ  309 (461)
Q Consensus       280 ~~i~V~tldG~~~l~Ip~g~-q~G~~~~l~g  309 (461)
                      +++.||-|    .+.||||+ +.|..-.|.|
T Consensus        72 a~i~IPEl----~lei~pg~~~~G~iTTVEG   98 (163)
T TIGR00340        72 ATIRIPEL----GIKIEPGPASQGYISNIEG   98 (163)
T ss_pred             cEEEccce----eEEecCCCcCCceEEehHh
Confidence            45667764    58899987 7888777744

A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	461
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		4e-13
1nlt_A	248	The Crystal Structure Of Hsp40 Ydj1 Length = 248		1e-10
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-09
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		1e-08
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		2e-08
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		1e-07
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		1e-07
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		2e-07
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-07
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		3e-07
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-07
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		4e-07
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		7e-07
2b26_A	173	The Crystal Structure Of The Protein Complex Of Yea		8e-07
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		8e-07
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		8e-07
2q2g_A	180	Crystal Structure Of Dimerization Domain Of Hsp40 F		1e-06
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		1e-06
1c3g_A	170	S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1		4e-06
1exk_A	79	Solution Structure Of The Cysteine-Rich Domain Of T		4e-06
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		6e-06
2ctt_A	104	Solution Structure Of Zinc Finger Domain From Human		7e-06
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		1e-05
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		8e-05
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		1e-04

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/48 (64%), Positives = 39/48 (81%)
Query: 16 ESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
          ++L YHPD NK PGAEEKFKEI+ AY+VLSD  KR ++DR+GE G+ G
Sbjct: 27 QALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74

>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 14/238 (5%)
Query: 114 DIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQR 173
           DI++++  S EE   G    + ++    C  C G G K    ++ C +C G+G    T++
Sbjct: 13  DIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKG-AVKKCTSCNGQGIKFVTRQ 71
Query: 174 TPFGLISQVSTCSKCGGDGKII--IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR 231
               +    + C  C G G II   D C+ C G      ++ ++V + PG+ +G  +  +
Sbjct: 72  MGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFK 131
Query: 232 GEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG-- 289
           GE +      + GD+   +     +   RDG +L  +  +D   AI G    +E V G  
Sbjct: 132 GEAD-QAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDW 190
Query: 290 MKDLRIPSGV-QPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEE 346
           +K   +P  V  PG    ++  G+P    P   G      N++I   I DPE     E
Sbjct: 191 LKVGIVPGEVIAPGMRKVIEGKGMP---IPKYGG----YGNLIIKFTIKDPENHFTSE 241

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 16 ESLLYHPDIN--KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQ 73
          ++L +HPD N      AE+KFKE++ AYEVLSD  KR +YDR+G  G+TG   G S    
Sbjct: 26 KALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGTGTGPSRAEA 85
Query: 74 G 74
          G
Sbjct: 86 G 86

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
          +HPD NK PGAE++F +IS AYE+LS++EKR+ YD +G    +G
Sbjct: 45 WHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGPSSG 88

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQG 74
          ++ YHPD NKSP AE KF+EI+ AYE LSD  +R  YD  G +  T    G S  S G
Sbjct: 32 AMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG-KGQSGPSSG 88

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 32/47 (68%)
Query: 17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
          +L +HPD N +PGA E FK I +AY VLS+ EKR  YD+FG    +G
Sbjct: 32 ALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPSSG 78

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 58
          +L YHPD  K+P   EKFK+IS AYEVLSD +KR +YD+ GE
Sbjct: 31 ALKYHPD--KNPNEGEKFKQISQAYEVLSDAKKRELYDKGGE 70

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 31/36 (86%)
Query: 20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDR 55
          YHPD++K P AE +FKE++ A+EVLSD+++R+ YD+
Sbjct: 33 YHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQ 68

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 17 SLLYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSVYDRFGEAG 60
          ++ YHPD N+    AE KFKEI  AYEVL+D +KR+ YD++G A 
Sbjct: 28 AMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 33/42 (78%), Gaps = 2/42 (4%)
Query: 17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 58
          +L +HPD  K+P   E+FK+IS AYEVLSD++KR +YD+ GE
Sbjct: 33 ALKFHPD--KNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE 72

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 17 SLLYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSVYDRFGEAG 60
          ++ YHPD N+    AE KFKEI  AYEVL+D +KR+ YD++G A 
Sbjct: 28 AMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 17 SLLYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSVYDRFGEAG 60
          ++ YHPD N+    AE KFKEI  AYEVL+D +KR+ YD++G A 
Sbjct: 28 AMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 31/41 (75%), Gaps = 2/41 (4%)
Query: 17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFG 57
          +L YHPD  K  G  EKFKEIS A+E+L+D +KR +YD++G
Sbjct: 33 ALKYHPD--KPTGDTEKFKEISEAFEILNDPQKREIYDQYG 71

>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 2/147 (1%)
Query: 201 RCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHR 260
           R G +G    K  + + + PG   G  +  + +G+++ +      L   +         R
Sbjct: 26  RKGPHG-ASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84
Query: 261 DGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           DG +L   + + + E++LG S  ++T++G    L     VQP  T      G+P   NPS
Sbjct: 85  DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPS 144
Query: 320 VRGDHLFIVNVLIPKDISDPERALVEE 346
            RG+ +    V  P  ++D ++  ++E
Sbjct: 145 QRGNLIVKYKVDYPISLNDAQKRAIDE 171

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 17 SLLYHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 61
          +L YHPD N  +P A +KFKEI++A+ +L+D  KR++YD++G  G+
Sbjct: 42 ALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL 87

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Query: 204 GNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL 263
           G  E ++ +++ V IP GV +G  ++++G+G         GDL++ +H+         G 
Sbjct: 173 GMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGH 232
Query: 264 NLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGD 323
           NL   + +   EA LG  + V T++    L +P G Q G  ++++  G   + + +  GD
Sbjct: 233 NLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKG---LVSKTHTGD 289
Query: 324 HLFIVNVLIPKDISDPERALVEEIA 348
              ++ +++P    +  R L +++A
Sbjct: 290 LFAVIKIVMPTKPDEKARELWQQLA 314

>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 214 MKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDY 273
           ++V I PG  +G  +   GEG+ +   +  GDL + +         RD  +L  K+++  
Sbjct: 44  VEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPL 103
Query: 274 TEAILGTSMEVETVEGMKDLRIPSG--VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVL 331
             A+ G +  V T++  ++L+IP    V P     +   G P  N P  +GD +   ++ 
Sbjct: 104 VRALTGFTCPVTTLDN-RNLQIPIKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDIC 162
Query: 332 IPKDISDPERALVEE 346
            PK ++  ++ L++E
Sbjct: 163 FPKSLTPEQKKLIKE 177

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 20 YHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
          YHPD NK  P A+EKF +++ AYEVLSD+ KR  YD +G    +G
Sbjct: 35 YHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPSSG 79

>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 201 RCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHR 260
           R G +G    K  + + + PG   G  +  + +G+++ +      L   +         R
Sbjct: 26  RKGPHG-ASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84
Query: 261 DGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           DG +L   + + + E++LG S  ++T++G    L     VQP  T      G+P   NPS
Sbjct: 85  DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPS 144
Query: 320 VRGDHLFIVNVLIPKDISDPERALVE 345
            RG+ +    V  P  ++D ++  ++
Sbjct: 145 QRGNLIVKYKVDYPISLNDAQKRAID 170

>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The Escherichia Coli Chaperone Protein Dnaj Length = 79

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 134 IEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGK 193
           I +   E CD C G+GAK     Q+C  C G G V   Q    G  +   TC  C G G 
Sbjct: 6   IRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGT 61
Query: 194 IIIDHCRRCGGNGEVQ 209
           +I D C +C G+G V+
Sbjct: 62  LIKDPCNKCHGHGRVE 77

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 17 SLLYHPDIN--KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
          +L +HPD N      AE +FK+++ AYEVLSD +KR +YDR+G    +G
Sbjct: 34 ALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPSSG 82

>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 Length = 104

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 119 LHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRT-PFG 177
           + L+F ++  G  +   V+  +TC+ C G G +    +Q C  C G G  ++T  T PF 
Sbjct: 8   MELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG--METINTGPFV 65
Query: 178 LISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKR 212
           +    STC +CGG G III  C  C G G+ + K+
Sbjct: 66  M---RSTCRRCGGRGSIIISPCVVCRGAGQAKQKK 97

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 17 SLLYHPDIN--KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFG 57
          +L +HPD N      AE+KFK +S AYEVLSD +KRS+YDR G
Sbjct: 34 ALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 17  SLLYHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT----GEYDGLS 69
           +L  HPD N  +P A   F +I+ AYEVL D++ R  YD++GE G+     G+Y+  S
Sbjct: 46  ALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWS 103

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 17 SLLYHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT----GEYDGLS 69
          +L  HPD N  +P A   F +I+ AYEVL D++ R  YD++GE G+     G+Y+  S
Sbjct: 27 ALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWS 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	461
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	1e-65
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	9e-55
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	4e-30
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	5e-27
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	4e-26
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	1e-25
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	3e-25
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	9e-25
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	3e-23
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	8e-23
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	3e-22
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-21
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-21
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	3e-21
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	5e-21
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	5e-21
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	9e-21
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	1e-20
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	3e-20
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	6e-20
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	1e-19
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	4e-19
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	2e-18
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	2e-18
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	2e-18
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	2e-17
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-16
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-15
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	1e-15
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	4e-15
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-11
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	3e-11
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	2e-10
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	4e-07
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	8e-07
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	9e-07

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  213 bits (544), Expect = 1e-65
 Identities = 62/334 (18%), Positives = 123/334 (36%), Gaps = 70/334 (20%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD++K   AE KFK+++ A+EVL D+++R+ YD+  +      +     T +     +
Sbjct: 56  YHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQTHEQSYSQQ 115

Query: 80  LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCF 139
            +   F     +FG                  G D+  ++ +  EE++    R I  +  
Sbjct: 116 DFDDIFS---SMFGQQAHQRR-----RQHAARGHDLEIEVAVFLEETLAEQTRTISYN-- 165

Query: 140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 199
                                  +G       +                           
Sbjct: 166 -----------------LPVYNVFGMIESETPKT-------------------------- 182

Query: 200 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 259
                         + V IP GV +G  ++++G+G         GDL++ +H+       
Sbjct: 183 --------------LNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFD 228

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
             G NL   + +   EA LG  + V T++    L +P G Q G  ++++  G+    + +
Sbjct: 229 IVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLV---SKT 285

Query: 320 VRGDHLFIVNVLIPKDISDPERALVEEIAFLKSP 353
             GD   ++ +++P    +  R L +++A  ++ 
Sbjct: 286 HTGDLFAVIKIVMPTKPDEKARELWQQLAAAEAS 319

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score =  182 bits (463), Expect = 9e-55
 Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 10/240 (4%)

Query: 112 GLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKT 171
           G DI++++  S EE   G    + ++    C  C G G K    ++ C +C G+G    T
Sbjct: 11  GKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKK-GAVKKCTSCNGQGIKFVT 69

Query: 172 QRTPFGLISQVSTCSKCGGDGKIII--DHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 229
           ++    +    + C  C G G II   D C+ C G      ++ ++V + PG+ +G  + 
Sbjct: 70  RQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIV 129

Query: 230 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG 289
            +GE +      + GD+   +     +   RDG +L  +  +D   AI G    +E V G
Sbjct: 130 FKGEAD-QAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSG 188

Query: 290 MK-DLRIPSG--VQPGDTVKLQQMGVPDINNPSVRGDHLFI-VNVLIPKDISDPERALVE 345
               + I  G  + PG    ++  G+P        G+ L I   +  P++    E  L +
Sbjct: 189 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGG-YGN-LIIKFTIKDPENHFTSEENLKK 246

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score =  111 bits (281), Expect = 4e-30
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 112 GLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKT 171
           G      + L+F ++  G  +   V+  +TC+ C G G +    +Q C  C G G     
Sbjct: 1   GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGME--- 57

Query: 172 QRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKV 216
                G     STC +CGG G III  C  C G G+ + K+    
Sbjct: 58  -TINTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGP 101

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180

 Score =  106 bits (266), Expect = 5e-27
 Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 5/163 (3%)

Query: 188 CGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLF 247
             G  K I    +R   +     +  ++V I PG  +G  +   GEG+ +   +  GDL 
Sbjct: 18  YLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77

Query: 248 VALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSG--VQPGDTV 305
           + +         RD  +L  K+++    A+ G +  V T++  ++L+IP    V P    
Sbjct: 78  LIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDN-RNLQIPIKEIVNPKTRK 136

Query: 306 KLQQMGVPDINNPSVRGDHLFI-VNVLIPKDISDPERALVEEI 347
            +   G+P  N P  +GD L +  ++  PK ++  ++ L++E 
Sbjct: 137 IVPNEGMPIKNQPGQKGD-LILEFDICFPKSLTPEQKKLIKEA 178

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score =   99 bits (250), Expect = 4e-26
 Identities = 30/44 (68%), Positives = 36/44 (81%)

Query: 20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
          YHPD NK PGAEEKFKEI+ AY+VLSD  KR ++DR+GE G+ G
Sbjct: 31 YHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 99.0 bits (247), Expect = 1e-25
 Identities = 24/44 (54%), Positives = 34/44 (77%)

Query: 20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
          +HPD NK PGAE++F +IS AYE+LS++EKR+ YD +G    +G
Sbjct: 45 WHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGPSSG 88

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 97.3 bits (243), Expect = 3e-25
 Identities = 24/44 (54%), Positives = 30/44 (68%)

Query: 20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
          +HPD N +PGA E FK I +AY VLS+ EKR  YD+FG    +G
Sbjct: 35 FHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPSSG 78

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170

 Score = 99.2 bits (248), Expect = 9e-25
 Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 202 CGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRD 261
             G      K  + + + PG   G  +  + +G+++ +      L   +         RD
Sbjct: 26  RKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRD 85

Query: 262 GLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPDINNPSV 320
           G +L   + + + E++LG S  ++T++G    L     VQP  T      G+P   NPS 
Sbjct: 86  GDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQ 145

Query: 321 RGDHLFI-VNVLIPKDISDPERALVE 345
           RG+ L +   V  P  ++D ++  ++
Sbjct: 146 RGN-LIVKYKVDYPISLNDAQKRAID 170

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181

 Score = 95.4 bits (238), Expect = 3e-23
 Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 185 CSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAG 244
            S C    KI         G       + + + +  G   G  +    EG+     ++  
Sbjct: 17  YSGCTKKMKIS-HKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGD-QTSNNIPA 74

Query: 245 DLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSG--VQPG 302
           D+   L         RDG ++     +   EA+ G ++ V T++G + + +     ++PG
Sbjct: 75  DIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG-RTIPVVFKDVIRPG 133

Query: 303 DTVKLQQMGVPDINNPSVRGDHLFI-VNVLIPKDISDPERALVEEI 347
              K+   G+P    P  RGD L I   V+ P+ I    R ++E++
Sbjct: 134 MRRKVPGEGLPLPKTPEKRGD-LIIEFEVIFPERIPQTSRTVLEQV 178

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 94.9 bits (236), Expect = 8e-23
 Identities = 38/149 (25%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 20  YHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPF 78
            HPD N  +P A   F +I+ AYEVL D++ R  YD++GE G+     G        + +
Sbjct: 30  LHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGG------QYESW 83

Query: 79  ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRY--------DLHLSFEESI--F 128
             Y   FG  D     +           N G       Y        DL  ++ E     
Sbjct: 84  SYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEV 143

Query: 129 GGQRGI-EVSCFETCDSCGGTGAKSSNCI 156
            G   I  V+C +    C   G  S   +
Sbjct: 144 DGLLRIGAVNCGDDRMLCRMKGVNSYPSL 172

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 89.7 bits (223), Expect = 3e-22
 Identities = 29/55 (52%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQG 74
          YHPD NKSP AE KF+EI+ AYE LSD  +R  YD  G +  T    G S  S G
Sbjct: 35 YHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGK-GQSGPSSG 88

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 87.8 bits (218), Expect = 2e-21
 Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 20 YHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQG 74
          +HPD N      AE+KFKE++ AYEVLSD  KR +YDR+G  G+TG   G S    G
Sbjct: 30 WHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGTGTGPSRAEAG 86

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 86.9 bits (216), Expect = 2e-21
 Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 20 YHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
          YHPD NK  P A+EKF +++ AYEVLSD+ KR  YD +G    +G
Sbjct: 35 YHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPSSG 79

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 86.5 bits (215), Expect = 3e-21
 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 2/46 (4%)

Query: 20 YHPDINK--SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
          +HPD N      AE +FK+++ AYEVLSD +KR +YDR+G    +G
Sbjct: 37 WHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPSSG 82

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 85.8 bits (213), Expect = 5e-21
 Identities = 23/39 (58%), Positives = 30/39 (76%), Gaps = 2/39 (5%)

Query: 20 YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 58
          +HPD N  P   E+FK+IS AYEVLSD++KR +YD+ GE
Sbjct: 36 FHPDKN--PDGAEQFKQISQAYEVLSDEKKRQIYDQGGE 72

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 87.1 bits (216), Expect = 5e-21
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 20  YHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPF 78
            HPD +  +P A E F+++  A E+L+++E R+ YD +  + ++  +      +  V   
Sbjct: 48  CHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMSMPFQQWEALNDSVKTS 107

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 86.3 bits (214), Expect = 9e-21
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 12/76 (15%)

Query: 20  YHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPF 78
           YHPD N  +P A +KFKEI++A+ +L+D  KR++YD++G  G+                 
Sbjct: 45  YHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYV---------AEQFGE 95

Query: 79  ELYSAFFGGSDGLFGG 94
           E  + +F        G
Sbjct: 96  ENVNTYFVSGP--SSG 109

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 85.1 bits (211), Expect = 1e-20
 Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 24/81 (29%)

Query: 20  YHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE 79
           YHPD  K  G  EKFKEIS A+E+L+D +KR +YD++G                      
Sbjct: 36  YHPD--KPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAARS---------------- 77

Query: 80  LYSAFFGGSDGLFGGVGEAGG 100
                 GG     GG G AGG
Sbjct: 78  ------GGPSFGPGGPGGAGG 92

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 84.3 bits (209), Expect = 3e-20
 Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 20 YHPDINK--SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
          +HPD N      AE+KFK +S AYEVLSD +KRS+YDR G      
Sbjct: 37 WHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA 82

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 84.0 bits (208), Expect = 6e-20
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 4/45 (8%)

Query: 20 YHPDINKSP----GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG 60
          +HPD  K+      AEE+F+ I++AYE L DDE ++ YD + +  
Sbjct: 44 HHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP 88

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 83.0 bits (206), Expect = 1e-19
 Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 20  YHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPF 78
           YHPD N+    AE KFKEI  AYEVL+D +KR+ YD++G A       G      G D  
Sbjct: 31  YHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFS 90

Query: 79  ELYSAFFGGSDGLFGG 94
           +++   FG    +FGG
Sbjct: 91  DIFGDVFG---DIFGG 103

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 81.3 bits (201), Expect = 4e-19
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 20 YHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 67
          YHPD N  S  A E+F  IS AY VL     R  YDR   +       G
Sbjct: 45 YHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDLRGPG 93

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 79.0 bits (195), Expect = 2e-18
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 20 YHPDINK-------SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
          YHPD               +KF EI  A+++L ++E +  YD       +G
Sbjct: 44 YHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGPSSG 94

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Length = 79

 Score = 78.5 bits (194), Expect = 2e-18
 Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 129 GGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC 188
           G  + I +   E CD C G+GAK     Q+C  C G G V   Q    G  +   TC  C
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHC 56

Query: 189 GGDGKIIIDHCRRCGGNGEVQ 209
            G G +I D C +C G+G V+
Sbjct: 57  QGRGTLIKDPCNKCHGHGRVE 77

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 78.6 bits (194), Expect = 2e-18
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYD 54
          ++L HPD   +PG+E+ FK + +A   L  + K     
Sbjct: 52 AVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGPSS 89

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109

 Score = 76.8 bits (190), Expect = 2e-17
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
             G NL   + +   EA LG  + V T++    L +P G Q G  ++++  G+    + +
Sbjct: 9   IVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLV---SKT 65

Query: 320 VRGDHLFIVNVLIPKDISDPERALVEEIA 348
             GD   ++ +++P    +  R L +++A
Sbjct: 66  HTGDLFAVIKIVMPTKPDEKARELWQQLA 94

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 73.7 bits (181), Expect = 2e-16
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 17  SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVD 76
              +HPD     G EEK K++++ Y+ + D  K +    FG      E       + G D
Sbjct: 35  CKEFHPDKG---GDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATE-----IPTYGTD 86

Query: 77  PFELYSAFFGGSDGLFG 93
            +E +   F   + LF 
Sbjct: 87  EWEQWWNAFNEEN-LFC 102

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 13/90 (14%)

Query: 18  LLYHPDINKSPG-------AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 70
           L+YHPD   +           +KF EI  A+++L ++E +  YD           D L N
Sbjct: 36  LMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE------DDLRN 89

Query: 71  TSQGVDPFELYSAFFGGSDGLFGGVGEAGG 100
                    L    +   D  F      GG
Sbjct: 90  VGPVDAQVYLEEMSWNEGDHSFYLSCRCGG 119

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 71.3 bits (175), Expect = 1e-15
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 18 LLYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEY 65
          L +HPD N      A E FK + +    L   EK++  D+  +      +
Sbjct: 42 LKWHPDKNPENHDIANEVFKHLQNEINRL---EKQAFLDQNADRASRRTF 88

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 72.3 bits (177), Expect = 4e-15
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVD 76
             +HPD     G EEK K++++ Y+ + D  K +    FG      E    S       
Sbjct: 38 CKEFHPDKG---GDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEVFASSLNPGVDA 94

Query: 77 PF 78
           +
Sbjct: 95 IY 96

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 76.7 bits (188), Expect = 4e-15
 Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 20  YHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPF 78
            HPD N  +P A   F +I+ AYEVL D++ R  YD++GE G+     G   +       
Sbjct: 49  LHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYD 108

Query: 79  -----ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRG 133
                +               V        NF + G+      +DL  ++ E        
Sbjct: 109 FGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGS---SHSHDLAPTWREFAKEVDGL 165

Query: 134 I---EVSCFETCDSCGGTGAKS 152
           +    V+C +    C   G  S
Sbjct: 166 LRIGAVNCGDDRMLCRMKGVNS 187

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 17  SLLYHPDINKSPG----AEEKFKEISSAYEVLSDDEKRSVYDR 55
           +L +HPD  ++      AE+KF +I++A EVLSD E R  +D 
Sbjct: 407 ALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 61.1 bits (148), Expect = 3e-11
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 17  SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVD 76
              +HPD   +    E+   ++ AY  L D  +RS Y       I    +  SN     D
Sbjct: 43  QAQHHPD--MAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSD 100

Query: 77  PFELYSAF 84
           P  L    
Sbjct: 101 PQLLLKVL 108

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 259 HRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSG----VQPGDTVKLQQMGVPD 314
            RDG +L  +  +D   AI G    +E V G   L++       + PG    ++  G+P 
Sbjct: 3   KRDGDDLVYEAEIDLLTAIAGGEFALEHVSG-DWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 315 INNPSVRGDHLFI-VNVLIPKD--ISDPERALVEEI 347
                  G+ L I   +  P++   S+     +EEI
Sbjct: 62  PKYGG-YGN-LIIKFTIKFPENHFTSEENLKKLEEI 95

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 53.3 bits (127), Expect = 1e-08
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 17  SLLYHPDINKSPG----AEEKFKEISSAYEVLSDDEKRSVY 53
            L+ HPD          A+  F E++ A+    +  ++ +Y
Sbjct: 142 VLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 6e-08
 Identities = 61/434 (14%), Positives = 130/434 (29%), Gaps = 97/434 (22%)

Query: 2   FVRMPRCRRSRPLTESLLYHP---DINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 58
           FV    C+  + + +S+L       I  S  A      +   +  L   ++  +  +F E
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTLLSKQE-EMVQKFVE 84

Query: 59  AGITGEYDGLSNT--SQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIR 116
             +   Y  L +   ++   P  +   +    D L+         N +           R
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----------R 133

Query: 117 YDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRT-P 175
              +L   +++   +    V      D   G+G K+   +  C +        K Q    
Sbjct: 134 LQPYLKLRQALLELRPAKNV----LIDGVLGSG-KTWVALDVCLS-------YKVQCKMD 181

Query: 176 FGL--ISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGE 233
           F +  ++ +  C+      +++     +   N   +S  S          +    ++R  
Sbjct: 182 FKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN---IKLRIHSIQAELR-- 235

Query: 234 GNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISV-----DYTEAILGTSMEVETVE 288
               + +     L V L+V   +    +  NL  KI +       T+ +   +    +++
Sbjct: 236 -RLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 289 -------------------GMKDLRIPSGVQPGDTVKLQQMGVPDINNPS-------VRG 322
                                +   +P  V   +  +L  +     +  +       V  
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 323 DHL--FI---VNVLIPKDISDPERALVEEIA-FLKS---PGK-----WHSVSTNSTEAA- 367
           D L   I   +NVL P +     R + + ++ F  S   P       W  V  +      
Sbjct: 353 DKLTTIIESSLNVLEPAEY----RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 368 ---QRKSAKVRDWK 378
               + S   +  K
Sbjct: 409 NKLHKYSLVEKQPK 422

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 16 ESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFG 57
          +SLL HPD     G+    +E++S +     +      +  G
Sbjct: 37 QSLLLHPDKG---GSHALMQELNSLWGTFKTEVYNLRMNLGG 75

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 48.0 bits (114), Expect = 8e-07
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 6/45 (13%)

Query: 17 SLLYHPDINKSPGAEEK------FKEISSAYEVLSDDEKRSVYDR 55
             YHPD   S    E+         I+ A++ L     R+ Y  
Sbjct: 28 QRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	461
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	100.0
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	100.0
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	100.0
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	100.0
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	100.0
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.94
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.91
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.87
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.83
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.78
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.78
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.75
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.75
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.74
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.74
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.74
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.72
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.71
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.71
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.7
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.7
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.7
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.69
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.66
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.63
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.59
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.59
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.59
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.57
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.54
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.54
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.53
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.48
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.47
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.47
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.46
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.45
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.44
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.43
2guz_A	71	Mitochondrial import inner membrane translocase su	99.36
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.31
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	98.97
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	98.88
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	98.54
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	98.48
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	98.47
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	98.41
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	98.05
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.68
2guz_B	65	Mitochondrial import inner membrane translocase su	97.61
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.52
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.48
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.42
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.97
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	96.39
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	80.57

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=100.00  E-value=1e-65  Score=519.28  Aligned_cols=273  Identities=23%  Similarity=0.377  Sum_probs=161.0

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccccccC--C--CCCCCCCCccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG--L--SNTSQGVDPFE   79 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~--~--~~~~~~~d~~d   79 (461)
                      ++.++||+|||+||++||||+|++++|+++|++|++|||||+||++|+.||+|+..+..+++++  +  +.+..+.++.|
T Consensus        40 as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~~~~~~~f~~~~f~d  119 (329)
T 3lz8_A           40 DDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQTHEQSYSQQDFDD  119 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCcccccccccCCcCCCchhh
Confidence            6789999999999999999999988999999999999999999999999999965432211110  0  11111235678


Q ss_pred             ccccccCCCCCCCCCCCCCCCcccccCCCCCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccC
Q 012541           80 LYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSC  159 (461)
Q Consensus        80 ~F~~~Fg~~~~~f~~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C  159 (461)
                      +|++|||+.+  .+     +     .+..+.+|.|++++|.|||+|+|+|++++|.+.+.+.|    |            
T Consensus       120 iF~~~Fg~~g--~~-----~-----~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~----g------------  171 (329)
T 3lz8_A          120 IFSSMFGQQA--HQ-----R-----RRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN----V------------  171 (329)
T ss_dssp             -----------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC----S------------
T ss_pred             hhHhhhcCcC--CC-----C-----CCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec----C------------
Confidence            8888886421  10     0     01225679999999999999999999999999876422    1            


Q ss_pred             CCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCC
Q 012541          160 KACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRR  239 (461)
Q Consensus       160 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~  239 (461)
                           .|.                                      ..+++.++++|+||||+++|++|+|+|+|+++.+
T Consensus       172 -----~G~--------------------------------------v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~  208 (329)
T 3lz8_A          172 -----FGM--------------------------------------IESETPKTLNVKIPAGVVDGQRIRLKGQGTPGEN  208 (329)
T ss_dssp             -----CC---------------------------------------CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC--
T ss_pred             -----CeE--------------------------------------EEEecceEEEEeCCCCCCCCCEEEEcccccCCCC
Confidence                 111                                      1123356899999999999999999999999877


Q ss_pred             CCCCccEEEEEEEEecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCC
Q 012541          240 RSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS  319 (461)
Q Consensus       240 g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~  319 (461)
                      ++.+|||||+|+|++|+.|+|+|+||+++++|+|+||+||+++.|+||||++.|+||+|+|||++++|+|+|||..   +
T Consensus       209 gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~gt~~g~~~rl~G~GmP~~---~  285 (329)
T 3lz8_A          209 GGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK---T  285 (329)
T ss_dssp             -CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBCS---S
T ss_pred             CCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECCCCCCCCEEEEcCCCCCCC---C
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999975   3


Q ss_pred             CCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 012541          320 VRGDHLFIVNVLIPKDISDPERALVEEIAFL  350 (461)
Q Consensus       320 ~rGDL~V~f~V~~P~~ls~~q~~lle~l~~~  350 (461)
                      .+|||||+|+|+||++||++|+++|++|++.
T Consensus       286 ~rGDL~v~~~V~~P~~l~~~q~~~l~~~~~~  316 (329)
T 3lz8_A          286 HTGDLFAVIKIVMPTKPDEKARELWQQLAAA  316 (329)
T ss_dssp             CBCCEEEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            6999999999999999999999999999993

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=100.00  E-value=3.3e-60  Score=462.25  Aligned_cols=233  Identities=24%  Similarity=0.476  Sum_probs=209.0

Q ss_pred             CCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcce-eeeecCCC
Q 012541          109 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLI-SQVSTCSK  187 (461)
Q Consensus       109 ~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~~  187 (461)
                      +.+++|++++|+|||||||+|++++|.+.+.+.|++|+|+|++.+. ..+|+.|+|+|+++..+++.+ ++ ++.++|+.
T Consensus         8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~   85 (248)
T 1nlt_A            8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDV   85 (248)
T ss_dssp             CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSS-EEEEEECSCTT
T ss_pred             CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCc-eEEEEEEcCCC
Confidence            4679999999999999999999999999999999999999999888 599999999999988888776 44 44679999


Q ss_pred             CCCccEEE--eeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccce
Q 012541          188 CGGDGKII--IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL  265 (461)
Q Consensus       188 C~G~G~~i--~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL  265 (461)
                      |+|+|++|  .++|..|+|.|++.+.++++|+||||+++|++|+|+|+|+++ +++.+|||||+|++++|+.|+|+|+||
T Consensus        86 C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~-~~g~~GDl~v~i~v~~h~~F~R~G~DL  164 (248)
T 1nlt_A           86 CHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQA-PDVIPGDVVFIVSERPHKSFKRDGDDL  164 (248)
T ss_dssp             CSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCC-TTCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred             CCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCC-CCCCcceEEEEEEEecCccceeeCCEE
Confidence            99999999  889999999999999999999999999999999999999996 456899999999999999999999999


Q ss_pred             EEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCC--CCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCCC--CChhH
Q 012541          266 FSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG--VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKD--ISDPE  340 (461)
Q Consensus       266 ~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g--~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~--ls~~q  340 (461)
                      |++++|||+|||||++++|+||||+ +.|+||+|  +|||++++|+|+|||..+++ .+|||||+|+|+||++  ||++|
T Consensus       165 ~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q  243 (248)
T 1nlt_A          165 VYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEEN  243 (248)
T ss_dssp             EEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC--------
T ss_pred             EEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHH
Confidence            9999999999999999999999995 79999999  99999999999999987654 7899999999999999  99999


Q ss_pred             HHHHH
Q 012541          341 RALVE  345 (461)
Q Consensus       341 ~~lle  345 (461)
                      +++|+
T Consensus       244 ~~~l~  248 (248)
T 1nlt_A          244 LKKLE  248 (248)
T ss_dssp             -----
T ss_pred             HHhhC
Confidence            99885

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=100.00  E-value=3.6e-46  Score=347.03  Aligned_cols=178  Identities=21%  Similarity=0.364  Sum_probs=158.9

Q ss_pred             CcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCc
Q 012541          112 GLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD  191 (461)
Q Consensus       112 g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~  191 (461)
                      ++|++++|+|||||||+|+++++.+.+.                                                    
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~~----------------------------------------------------   29 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISHK----------------------------------------------------   29 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEEE----------------------------------------------------
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEecc----------------------------------------------------
Confidence            4689999999999999999999987532                                                    


Q ss_pred             cEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeeec
Q 012541          192 GKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISV  271 (461)
Q Consensus       192 G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I  271 (461)
                             |..|+|.|++.+.++++|+||||+++|++|+|+|+|+++. ++.+|||||+|++++|+.|+|+|+|||++++|
T Consensus        30 -------c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I  101 (181)
T 3agx_A           30 -------RLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARI  101 (181)
T ss_dssp             -------EECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred             -------cCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEc
Confidence                   3344445555667899999999999999999999999976 67899999999999999999999999999999


Q ss_pred             CHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHh
Q 012541          272 DYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAF  349 (461)
Q Consensus       272 sl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~~  349 (461)
                      ||+||+||+++.|+||||+ +.|+||+++|||++++|+|+|||..++++.+|||||+|+|+||++||++|+++|++|+.
T Consensus       102 sl~eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~~~~~  180 (181)
T 3agx_A          102 SLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP  180 (181)
T ss_dssp             EHHHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHHHHSC
T ss_pred             CHHHHhCCCEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhcc
Confidence            9999999999999999995 78999999999999999999999876556799999999999999999999999999873

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4.3e-45  Score=339.53  Aligned_cols=177  Identities=21%  Similarity=0.373  Sum_probs=163.7

Q ss_pred             CCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCC
Q 012541          111 FGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGG  190 (461)
Q Consensus       111 ~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G  190 (461)
                      +++|++++|.|||||||+|+++++.+.+.+.|+.                                              
T Consensus         2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----------------------------------------------   35 (180)
T 2q2g_A            2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----------------------------------------------   35 (180)
T ss_dssp             --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----------------------------------------------
T ss_pred             CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----------------------------------------------
Confidence            3679999999999999999999999999888741                                              


Q ss_pred             ccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeee
Q 012541          191 DGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS  270 (461)
Q Consensus       191 ~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~  270 (461)
                                     |++.+.++++|+||||+++|++|+|+|+|+++.+++.+|||||+|++++|+.|+|+|+|||++++
T Consensus        36 ---------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~  100 (180)
T 2q2g_A           36 ---------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVT  100 (180)
T ss_dssp             ---------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEE
T ss_pred             ---------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEE
Confidence                           23445689999999999999999999999997778899999999999999999999999999999


Q ss_pred             cCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHH
Q 012541          271 VDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA  348 (461)
Q Consensus       271 Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle~l~  348 (461)
                      |||+||+||+++.|+||||+ +.|+||+++|||++++|+|+|||..++++.+|||||+|+|+||++||++|+++|++|+
T Consensus       101 Isl~eAllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~~~  179 (180)
T 2q2g_A          101 IPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL  179 (180)
T ss_dssp             EEHHHHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHHHHC
T ss_pred             cCHHHHhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence            99999999999999999995 7899999999999999999999987666679999999999999999999999999986

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=100.00  E-value=7.8e-43  Score=321.49  Aligned_cols=169  Identities=21%  Similarity=0.429  Sum_probs=155.0

Q ss_pred             cccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 012541          113 LDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG  192 (461)
Q Consensus       113 ~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G  192 (461)
                      +|++++|.|||+|||+|+++++++.+.  |  +                                               
T Consensus         1 ~d~~~~l~islee~~~G~~k~i~~~~~--~--~-----------------------------------------------   29 (170)
T 1c3g_A            1 ETVQVNLPVSLEDLFVGKKKSFKIGRK--G--P-----------------------------------------------   29 (170)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEE--E--T-----------------------------------------------
T ss_pred             CCEEEEEEeEHHHhhCCcEEEEEEEEe--c--C-----------------------------------------------
Confidence            478999999999999999999999875  1  0                                               


Q ss_pred             EEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceEEeeecC
Q 012541          193 KIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVD  272 (461)
Q Consensus       193 ~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Is  272 (461)
                                  .|.+ +.++++|+||||+.+|++|+|+|+|+++.+++.+|||||+|++++|+.|+|+|+|||++++|+
T Consensus        30 ------------~G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Is   96 (170)
T 1c3g_A           30 ------------HGAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS   96 (170)
T ss_dssp             ------------TTEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCB
T ss_pred             ------------CCcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcC
Confidence                        0112 457899999999999999999999998888899999999999999999999999999999999


Q ss_pred             HHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHH
Q 012541          273 YTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVE  345 (461)
Q Consensus       273 l~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~q~~lle  345 (461)
                      |+||+||+++.|+||||+ +.|+||+++|||++++|+|+|||..++++.+|||||+|+|+||++||++|+++|+
T Consensus        97 l~eAllG~~~~v~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~  170 (170)
T 1c3g_A           97 FKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID  170 (170)
T ss_dssp             HHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHTC
T ss_pred             HHHHhCCCeEEeeCCCCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHhhC
Confidence            999999999999999996 7999999999999999999999987666679999999999999999999998874

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.94  E-value=8.2e-27  Score=199.19  Aligned_cols=96  Identities=22%  Similarity=0.363  Sum_probs=90.6

Q ss_pred             EecccccccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEc
Q 012541          253 DEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLI  332 (461)
Q Consensus       253 ~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~  332 (461)
                      ++|+.|+|+|+||+++++|+|.||++|+++.|+|+||.+.|+||+|++||++++|+|+|||. .  +.+|||||+|+|+|
T Consensus         2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~g~~~G~~~rl~G~G~p~-~--~~~GDL~v~~~V~~   78 (109)
T 3i38_A            2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVS-K--THTGDLFAVIKIVM   78 (109)
T ss_dssp             --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBC-S--SCBCCEEEEEEECC
T ss_pred             CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCCCcCcCeEEEECCccCCC-C--CCCcCEEEEEEEEC
Confidence            68999999999999999999999999999999999999999999999999999999999997 3  27999999999999


Q ss_pred             CCCCChhHHHHHHHHHhhc
Q 012541          333 PKDISDPERALVEEIAFLK  351 (461)
Q Consensus       333 P~~ls~~q~~lle~l~~~~  351 (461)
                      |++||++|+++|++|+++.
T Consensus        79 P~~Ls~~q~~~l~~l~~~~   97 (109)
T 3i38_A           79 PTKPDEKARELWQQLAAAE   97 (109)
T ss_dssp             CSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999974

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.2e-24  Score=189.30  Aligned_cols=95  Identities=24%  Similarity=0.360  Sum_probs=85.2

Q ss_pred             cccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCC--CCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcC
Q 012541          257 GIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG--VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIP  333 (461)
Q Consensus       257 ~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g--~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P  333 (461)
                      .|+|+|+||+++++|+|.+|+||+++.|+||||+ +.|+||+|  +|||++++|+|+|||..+++ .+|||||+|+|++|
T Consensus         1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P   79 (121)
T 1xao_A            1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP   79 (121)
T ss_dssp             CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred             CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence            4899999999999999999999999999999996 79999999  99999999999999987654 78999999999999


Q ss_pred             CC--CChhHHHHHHHHHhhcC
Q 012541          334 KD--ISDPERALVEEIAFLKS  352 (461)
Q Consensus       334 ~~--ls~~q~~lle~l~~~~~  352 (461)
                      +.  |+++|+++|++|+....
T Consensus        80 ~~~~ls~~q~~~l~~l~~~~~  100 (121)
T 1xao_A           80 ENHFTSEENLKKLEEILPPRI  100 (121)
T ss_dssp             CTTCSCHHHHHHHHHHSCCCC
T ss_pred             CCCCCCHHHHHHHHHHccccc
Confidence            99  99999999999997553

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=4.5e-23  Score=174.63  Aligned_cols=103  Identities=30%  Similarity=0.623  Sum_probs=95.2

Q ss_pred             CcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCc
Q 012541          112 GLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD  191 (461)
Q Consensus       112 g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~  191 (461)
                      |.|++++|.|||||||+|++++|.+.+.+.|+.|+|+|++++....+|+.|+|+|++...+    |+|++.++|+.|+|+
T Consensus         1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~   76 (104)
T 2ctt_A            1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGR   76 (104)
T ss_dssp             CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSS
T ss_pred             CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCc
Confidence            4678999999999999999999999999999999999999988889999999999987653    668888999999999


Q ss_pred             cEEEeeeccccCCceEEeecceEEEEe
Q 012541          192 GKIIIDHCRRCGGNGEVQSKRSMKVVI  218 (461)
Q Consensus       192 G~~i~~~C~~C~G~g~v~~~k~l~V~I  218 (461)
                      |+++.++|+.|+|.|++.+.+.|+|+|
T Consensus        77 G~~i~~~C~~C~G~G~v~~~k~l~V~~  103 (104)
T 2ctt_A           77 GSIIISPCVVCRGAGQAKQKKRSGPSS  103 (104)
T ss_dssp             SEECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred             ceECCCcCCCCCCeeEEEEEEEEEEEc
Confidence            999999999999999999988888865

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.83  E-value=1.1e-21  Score=165.70  Aligned_cols=85  Identities=36%  Similarity=0.545  Sum_probs=57.9

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccccccccCCCCCCCCCCccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELY   81 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~~~~~~~~~~~~d~~d~F   81 (461)
                      -++.++||+|||+||++||||+|+ +++++++|++|++||+||+||.+|+.||++|++++..+..++++.+.+.++.++|
T Consensus        14 ~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~~~~~~~~~~~~f   93 (103)
T 1bq0_A           14 TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIF   93 (103)
T ss_dssp             SCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC----------------
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCCCCCCCCCHHHHH
Confidence            368899999999999999999998 4789999999999999999999999999999998875422111111123566778


Q ss_pred             ccccCC
Q 012541           82 SAFFGG   87 (461)
Q Consensus        82 ~~~Fg~   87 (461)
                      +.+|+.
T Consensus        94 ~~~f~~   99 (103)
T 1bq0_A           94 GDVFGD   99 (103)
T ss_dssp             ------
T ss_pred             HHHHHh
Confidence            888854

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.78  E-value=8.7e-20  Score=145.89  Aligned_cols=61  Identities=51%  Similarity=0.827  Sum_probs=57.5

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG   63 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~   63 (461)
                      -++.++|++||++||++||||+|++++++++|++|++||+||+||.+|+.||++|.+++.+
T Consensus        14 ~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   74 (77)
T 1hdj_A           14 GASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             TCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence            3688999999999999999999998899999999999999999999999999999988764

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=9.7e-20  Score=149.44  Aligned_cols=62  Identities=42%  Similarity=0.633  Sum_probs=58.0

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE   64 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~   64 (461)
                      -++.++||+|||+||++||||+|++++++++|++|++||+||+||.+|+.||++|+.++.++
T Consensus        18 ~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   79 (88)
T 2ctr_A           18 SASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG   79 (88)
T ss_dssp             TCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCS
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccC
Confidence            36889999999999999999999998999999999999999999999999999999887654

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=4.7e-19  Score=141.94  Aligned_cols=59  Identities=41%  Similarity=0.593  Sum_probs=55.3

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI   61 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~   61 (461)
                      -++.++||+||++||++||||+|+.++++++|++|++||+||+||.+|+.||++|+.+.
T Consensus        18 ~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   76 (78)
T 2ctp_A           18 GASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPS   76 (78)
T ss_dssp             TCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCSC
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            36789999999999999999999988999999999999999999999999999998653

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=7.2e-19  Score=145.35  Aligned_cols=62  Identities=42%  Similarity=0.541  Sum_probs=56.6

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhccccccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE   64 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~   64 (461)
                      -++.++||+||++||++||||+|++  +.++++|++|++||+||+||.+|+.||++|.+++..+
T Consensus        20 ~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   83 (92)
T 2dmx_A           20 SASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAG   83 (92)
T ss_dssp             TCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCCC
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCC
Confidence            3678999999999999999999985  4789999999999999999999999999999887653

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=7.2e-19  Score=141.16  Aligned_cols=59  Identities=39%  Similarity=0.595  Sum_probs=54.6

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhcccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI   61 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~   61 (461)
                      -++.++||+||++||++||||+|+ +++++++|++|++||+||+||.+|+.||++|..+.
T Consensus        18 ~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   77 (79)
T 2dn9_A           18 NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS   77 (79)
T ss_dssp             TCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence            368899999999999999999998 47899999999999999999999999999997653

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=7.2e-19  Score=142.15  Aligned_cols=60  Identities=37%  Similarity=0.604  Sum_probs=54.9

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhccccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT   62 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~   62 (461)
                      -++.++||+||++||++||||+|++  +.++++|++|++||+||+||.+|+.||++|+.++.
T Consensus        20 ~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~   81 (82)
T 2ej7_A           20 QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPSS   81 (82)
T ss_dssp             TCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSCC
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccccC
Confidence            3688999999999999999999985  47899999999999999999999999999987654

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.74  E-value=7.4e-19  Score=144.18  Aligned_cols=58  Identities=40%  Similarity=0.638  Sum_probs=54.7

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG   60 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g   60 (461)
                      -++.++||+|||+||++||||+|+++.++++|++|++||+||+||.+|+.||++|+.+
T Consensus        28 ~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           28 TASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             TCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            3678999999999999999999998899999999999999999999999999999764

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.6e-18  Score=143.39  Aligned_cols=59  Identities=36%  Similarity=0.570  Sum_probs=53.7

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE   64 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~   64 (461)
                      ++.++|++||++||++||||+|++  ++++|++|++||+||+||.+|+.||++|++++..+
T Consensus        20 as~~eIk~ayr~l~~~~HPDk~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~   78 (92)
T 2o37_A           20 ANEQELKKGYRKAALKYHPDKPTG--DTEKFKEISEAFEILNDPQKREIYDQYGLEAARSG   78 (92)
T ss_dssp             CCHHHHHHHHHHHHHHHCTTSTTC--CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence            688999999999999999999963  46799999999999999999999999999887643

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=2.3e-18  Score=147.56  Aligned_cols=59  Identities=25%  Similarity=0.420  Sum_probs=55.5

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhccccccccccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT   62 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~   62 (461)
                      +++++||+|||+||++||||+|+ +++|+++|++|++||+||+||.+|+.||++|++++.
T Consensus        32 as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~   91 (112)
T 2ctq_A           32 SSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS   91 (112)
T ss_dssp             SCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence            67899999999999999999998 588999999999999999999999999999987764

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.71  E-value=2.9e-18  Score=143.73  Aligned_cols=61  Identities=44%  Similarity=0.698  Sum_probs=53.4

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhcccccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG   63 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~   63 (461)
                      -++.++||+||++||++||||+|++  +.|+++|++|++||+||+||.+|+.||++|.+++.+
T Consensus        13 ~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~   75 (99)
T 2lgw_A           13 SASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG   75 (99)
T ss_dssp             TSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            3688999999999999999999985  468999999999999999999999999999888764

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=5.2e-18  Score=142.17  Aligned_cols=54  Identities=37%  Similarity=0.505  Sum_probs=50.8

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRF   56 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~   56 (461)
                      -++.++||+|||+||++||||+|+ +++++++|++|++||+||+||.+|+.||++
T Consensus        28 ~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~   82 (99)
T 2yua_A           28 TATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRG   82 (99)
T ss_dssp             TCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            368899999999999999999997 578999999999999999999999999984

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.70  E-value=4.3e-18  Score=145.15  Aligned_cols=60  Identities=37%  Similarity=0.611  Sum_probs=55.8

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhccccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT   62 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~   62 (461)
                      -++.++||+||++||++||||+|+ +++|+++|++|++||+||+||.+|+.||++|..++.
T Consensus        28 ~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~   88 (109)
T 2ctw_A           28 NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY   88 (109)
T ss_dssp             TCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence            368899999999999999999998 478999999999999999999999999999987764

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.70  E-value=6.1e-18  Score=133.76  Aligned_cols=54  Identities=43%  Similarity=0.627  Sum_probs=48.9

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA   59 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~   59 (461)
                      ++.++|++||++||++||||+|++  ++++|++|++||+||+||.+|+.||++|++
T Consensus        20 a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   73 (73)
T 2och_A           20 ASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGEE   73 (73)
T ss_dssp             CCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence            678999999999999999999964  468999999999999999999999999863

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.69  E-value=5.7e-18  Score=159.19  Aligned_cols=61  Identities=38%  Similarity=0.606  Sum_probs=56.9

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhccccccccccccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE   64 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~   64 (461)
                      ++.++||+|||+||++||||+|+ +++|+++|++|++||+||+||.+|+.||+||++++...
T Consensus        14 a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~   75 (210)
T 3apq_A           14 ASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN   75 (210)
T ss_dssp             CCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTT
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccc
Confidence            68899999999999999999997 58899999999999999999999999999999887643

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.66  E-value=3.1e-17  Score=135.86  Aligned_cols=56  Identities=27%  Similarity=0.392  Sum_probs=51.1

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCC-------hhhHHHHHHHHHHHhhccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKS-------PGAEEKFKEISSAYEVLSDDEKRSVYDRFGE   58 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~-------~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~   58 (461)
                      -++.++||+||++||++||||+|+.       +.++++|++|++||+||+||.+|+.||++..
T Consensus        27 ~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           27 SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             TCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            3688999999999999999999873       5789999999999999999999999999754

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.63  E-value=5.7e-17  Score=138.11  Aligned_cols=55  Identities=33%  Similarity=0.380  Sum_probs=51.7

Q ss_pred             ChHHHHHHHHHHHHHhCCCCCCC----hhhHHHHHHHHHHHhhcccccccccccccccc
Q 012541            5 MPRCRRSRPLTESLLYHPDINKS----PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA   59 (461)
Q Consensus         5 ~~~~Ir~Ayr~LA~kyHPD~N~~----~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~   59 (461)
                      +.++||+|||+||++||||++++    +.|+++|++|++||+||+||.+|+.||+++..
T Consensus        29 s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           29 DKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             CHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            78999999999999999999985    67899999999999999999999999998854

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=6.2e-16  Score=127.27  Aligned_cols=50  Identities=24%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV   52 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~   52 (461)
                      -++.++||+|||+||++||||+|++++++++|++|++||+||+||.+|+.
T Consensus        38 ~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           38 GASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             TCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            36889999999999999999999998999999999999999999999974

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.59  E-value=1.6e-16  Score=136.42  Aligned_cols=52  Identities=27%  Similarity=0.381  Sum_probs=47.9

Q ss_pred             CCh--HHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccc
Q 012541            4 RMP--RCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE   58 (461)
Q Consensus         4 ~~~--~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~   58 (461)
                      +++  ++||+|||+||++||||+|++   +++|++|++||+||+||.+|+.||.||.
T Consensus        20 as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A           20 AWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             SCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             CCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            455  899999999999999999975   4799999999999999999999999885

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.59  E-value=4.9e-16  Score=124.80  Aligned_cols=55  Identities=20%  Similarity=0.205  Sum_probs=48.8

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI   61 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~   61 (461)
                      .++.++||+|||+||++||||+|.+   +++|++|++|||||+|+.+|.. |.||++++
T Consensus        24 ~a~~~eIk~aYr~la~~~HPDk~~~---~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~~   78 (79)
T 1faf_A           24 WGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLR-MNLGGTGF   78 (79)
T ss_dssp             TTCHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHT-TCCSSCCC
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHHhhHHHHHH-HhcCCccC
Confidence            3789999999999999999999853   5899999999999999999988 56887654

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.57  E-value=2.3e-16  Score=144.57  Aligned_cols=50  Identities=28%  Similarity=0.400  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccccc
Q 012541            6 PRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE   58 (461)
Q Consensus         6 ~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~   58 (461)
                      .++||+|||+||++||||+|++   +++|++|++|||||+||.+|+.||+||.
T Consensus        27 ~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           27 IPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             HHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            5999999999999999999975   3789999999999999999999999996

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.54  E-value=5.4e-15  Score=118.41  Aligned_cols=78  Identities=38%  Similarity=0.856  Sum_probs=70.0

Q ss_pred             ceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEE
Q 012541          129 GGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEV  208 (461)
Q Consensus       129 G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v  208 (461)
                      |++++|.+.+.+.|+.|+|+|........+|+.|+|+|.++..+    |+|++..+|+.|+|.|+++..+|..|+|.|++
T Consensus         1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~   76 (79)
T 1exk_A            1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV   76 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred             CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEE
Confidence            67788999999999999999998877788999999999987644    77887889999999999999999999999988


Q ss_pred             ee
Q 012541          209 QS  210 (461)
Q Consensus       209 ~~  210 (461)
                      .+
T Consensus        77 ~~   78 (79)
T 1exk_A           77 ER   78 (79)
T ss_dssp             EC
T ss_pred             ee
Confidence            54

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.54  E-value=2.5e-15  Score=135.71  Aligned_cols=56  Identities=25%  Similarity=0.363  Sum_probs=50.4

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCCh-------hhHHHHHHHHHHHhhccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSP-------GAEEKFKEISSAYEVLSDDEKRSVYDRFGE   58 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~-------~aeekFkeI~eAYEVLsD~~KR~~YD~~G~   58 (461)
                      -+++++||+|||+||++||||+++.+       .|+++|++|++||+||+||.+|+.||.++.
T Consensus        21 ~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A           21 SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             TCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            36789999999999999999999743       367999999999999999999999998764

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.53  E-value=4.3e-15  Score=121.71  Aligned_cols=52  Identities=21%  Similarity=0.137  Sum_probs=46.1

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYD   54 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~YD   54 (461)
                      -++.++||+|||+||++||||+|++  ++|+++|++|++|||||+|...|..+.
T Consensus        27 ~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~~   80 (88)
T 1iur_A           27 KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQNA   80 (88)
T ss_dssp             SSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSSS
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            3688999999999999999999986  468999999999999999998885443

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.48  E-value=7.9e-15  Score=120.79  Aligned_cols=44  Identities=18%  Similarity=0.218  Sum_probs=39.9

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCCh----hhHHHHHHHHHHHhhccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSP----GAEEKFKEISSAYEVLSD   46 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~----~aeekFkeI~eAYEVLsD   46 (461)
                      .+++++||+|||+||++||||+|++.    .|+++|++|++|||||.+
T Consensus        44 ~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           44 LVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             SSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999853    389999999999999976

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.47  E-value=5.5e-15  Score=125.19  Aligned_cols=45  Identities=20%  Similarity=0.205  Sum_probs=40.9

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCCh--------hhHHHHHHHHHHHhhccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSP--------GAEEKFKEISSAYEVLSDDE   48 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~--------~aeekFkeI~eAYEVLsD~~   48 (461)
                      +++.+||+|||+||++||||+|+++        .|+++|++|++|||||||+.
T Consensus        52 As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           52 IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            7899999999999999999998732        47899999999999999986

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.47  E-value=2.5e-15  Score=167.15  Aligned_cols=62  Identities=37%  Similarity=0.596  Sum_probs=30.7

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhccccccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE   64 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~~   64 (461)
                      -++.++||+|||+||++||||+|+ +++|+++|++|++||+||+||++|+.||+||++++..+
T Consensus        32 ~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~   94 (780)
T 3apo_A           32 TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN   94 (780)
T ss_dssp             TCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence            368999999999999999999997 57899999999999999999999999999999887654

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.46  E-value=5.3e-15  Score=136.92  Aligned_cols=52  Identities=23%  Similarity=0.223  Sum_probs=48.7

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF   56 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~   56 (461)
                      -+++++|++|||+||++||||+|++  |+++|++|++||+||+||.+|+.||..
T Consensus        29 ~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~   80 (181)
T 3uo3_A           29 TIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLK   80 (181)
T ss_dssp             CCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence            3688999999999999999999975  789999999999999999999999984

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.45  E-value=1.7e-14  Score=136.21  Aligned_cols=52  Identities=21%  Similarity=0.149  Sum_probs=47.1

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCCh------hhHHHHHHHHHHHhhcccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR   55 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~------~aeekFkeI~eAYEVLsD~~KR~~YD~   55 (461)
                      +++++||+|||+||++||||+|++.      .|+++|++|++||+||+||.+|+.||.
T Consensus        57 a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~  114 (207)
T 3bvo_A           57 VDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL  114 (207)
T ss_dssp             CCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            5789999999999999999999742      266799999999999999999999995

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.44  E-value=2.3e-14  Score=131.54  Aligned_cols=53  Identities=23%  Similarity=0.130  Sum_probs=48.2

Q ss_pred             ChHHHHHHHHHHHHHhCCCCCCCh------hhHHHHHHHHHHHhhcccccccccccccc
Q 012541            5 MPRCRRSRPLTESLLYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDRFG   57 (461)
Q Consensus         5 ~~~~Ir~Ayr~LA~kyHPD~N~~~------~aeekFkeI~eAYEVLsD~~KR~~YD~~G   57 (461)
                      ++.+|++|||+||++||||+|++.      .|.++|++|++||+||+||.+|+.||...
T Consensus        16 ~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A           16 DTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             CHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            799999999999999999999842      25679999999999999999999999864

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.36  E-value=2.4e-13  Score=106.79  Aligned_cols=45  Identities=16%  Similarity=0.062  Sum_probs=40.7

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRS   51 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~   51 (461)
                      ++.++|++|||+||++||||+|.   +.++|++|++|||||+|+..|+
T Consensus        27 a~~~eIk~ayr~l~~~~HPDk~g---~~~~f~~i~~Aye~L~~~~~rk   71 (71)
T 2guz_A           27 LTKKKLKEVHRKIMLANHPDKGG---SPFLATKINEAKDFLEKRGISK   71 (71)
T ss_dssp             CCHHHHHHHHHHHHHHHCGGGTC---CHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHhhhhhcC
Confidence            68899999999999999999974   3479999999999999998774

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.31  E-value=2e-12  Score=125.39  Aligned_cols=64  Identities=22%  Similarity=0.376  Sum_probs=45.2

Q ss_pred             cCCceEEee-c-ceEEEEeCCC--CCCCCEEEEcccccCCCCCCCCccEEEEEEEEeccc--ccccccce
Q 012541          202 CGGNGEVQS-K-RSMKVVIPPG--VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG--IHRDGLNL  265 (461)
Q Consensus       202 C~G~g~v~~-~-k~l~V~IP~G--v~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~--f~R~G~DL  265 (461)
                      |+++-.+.. . +.++|+||+|  +++|++++|+|+|.+...+...|||||+|+|..+..  +..+..+|
T Consensus       177 lG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~  246 (248)
T 1nlt_A          177 AGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKK  246 (248)
T ss_dssp             HCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC-----------
T ss_pred             cCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHh
Confidence            466666665 3 3699999999  999999999999998654435799999999998876  66554443

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=98.97  E-value=2e-10  Score=97.63  Aligned_cols=52  Identities=25%  Similarity=0.555  Sum_probs=43.8

Q ss_pred             eEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecccccccccceE
Q 012541          213 SMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLF  266 (461)
Q Consensus       213 ~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~  266 (461)
                      .++|+||+|+++|++++|+|+|++. .+ ..|||||+|+|..+.....+..+++
T Consensus        39 ~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~Ls~~q~~~l   90 (109)
T 3i38_A           39 SILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKPDEKARELW   90 (109)
T ss_dssp             CEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSCCHHHHHHH
T ss_pred             CEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCCCHHHHHHH
Confidence            4789999999999999999999986 33 7999999999998887665554443

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=98.88  E-value=7.9e-10  Score=95.64  Aligned_cols=55  Identities=22%  Similarity=0.332  Sum_probs=41.8

Q ss_pred             ceEEEEeCCC--CCCCCEEEEcccccCCCCCCCCccEEEEEEEEeccc--ccccccceE
Q 012541          212 RSMKVVIPPG--VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG--IHRDGLNLF  266 (461)
Q Consensus       212 k~l~V~IP~G--v~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~~--f~R~G~DL~  266 (461)
                      +.++|+||+|  +++|++++|+|+|++...+...|||||+++|..+..  +..+..+++
T Consensus        34 ~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~l   92 (121)
T 1xao_A           34 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKKL   92 (121)
T ss_dssp             CEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHHH
T ss_pred             CEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHH
Confidence            3589999999  999999999999998654446799999999998876  665554443

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=98.54  E-value=4e-08  Score=90.69  Aligned_cols=83  Identities=22%  Similarity=0.311  Sum_probs=66.4

Q ss_pred             CCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCC
Q 012541          110 NFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCG  189 (461)
Q Consensus       110 ~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  189 (461)
                      +.|.|+.+++.|||.||+.|+++++..-                                                    
T Consensus        90 R~G~DL~~~~~Isl~eAllG~~i~v~tl----------------------------------------------------  117 (181)
T 3agx_A           90 RDGSDVIYPARISLREALCGCTVNVPTL----------------------------------------------------  117 (181)
T ss_dssp             EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred             eeCCcEEEEEEcCHHHHhCCCEEEeECC----------------------------------------------------
Confidence            4688999999999999999987665321                                                    


Q ss_pred             CccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCC-CCCCccEEEEEEEEecccccccccc
Q 012541          190 GDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRR-RSLAGDLFVALHVDEKQGIHRDGLN  264 (461)
Q Consensus       190 G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~-g~~~GDL~V~i~v~~h~~f~R~G~D  264 (461)
                                     .     .+.++|.||+|+++|++++|+|+|.+... .+..|||||+++|..+..+..+..+
T Consensus       118 ---------------d-----G~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~  173 (181)
T 3agx_A          118 ---------------D-----GRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRT  173 (181)
T ss_dssp             ---------------T-----SCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHH
T ss_pred             ---------------C-----CCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHH
Confidence                           0     13578999999999999999999998653 3567999999999988766544433

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=98.48  E-value=1.5e-07  Score=94.70  Aligned_cols=74  Identities=20%  Similarity=0.341  Sum_probs=51.4

Q ss_pred             cccceEEeeecCHHHHHcCCeeEEeee------C--------CeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEE
Q 012541          261 DGLNLFSKISVDYTEAILGTSMEVETV------E--------GMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLF  326 (461)
Q Consensus       261 ~G~DL~~~~~Isl~eAllG~~i~V~tl------d--------G~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V  326 (461)
                      .|.||++++.|+|.||+.|.+..|..-      .        ..++|+||+|+++|++|+|+|+|.|...+ +..|||||
T Consensus       139 ~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~g-g~~GDL~v  217 (329)
T 3lz8_A          139 RGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENG-GPNGDLWL  217 (329)
T ss_dssp             CCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC----CCCCCEEE
T ss_pred             CCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCC-CCCCcEEE
Confidence            455666666666666666655444321      1        13689999999999999999999986542 46899999


Q ss_pred             EEEEEcCCC
Q 012541          327 IVNVLIPKD  335 (461)
Q Consensus       327 ~f~V~~P~~  335 (461)
                      +|+|.-...
T Consensus       218 ~I~v~~h~~  226 (329)
T 3lz8_A          218 VIHIAPHPL  226 (329)
T ss_dssp             EECCCCCSS
T ss_pred             EEEEecCCc
Confidence            988875543

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=98.47  E-value=3.8e-07  Score=83.28  Aligned_cols=71  Identities=13%  Similarity=0.257  Sum_probs=58.8

Q ss_pred             ceEEeeecCHHHHHcCCeeEEeee----CC-----eEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCC
Q 012541          264 NLFSKISVDYTEAILGTSMEVETV----EG-----MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPK  334 (461)
Q Consensus       264 DL~~~~~Isl~eAllG~~i~V~tl----dG-----~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~  334 (461)
                      |+.+++.|||.||+.|++..|.--    .|     .++|+||+|+..|++++++|+|-+... .+..|||||+++|.-..
T Consensus         2 d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~-gg~~GDl~v~i~v~~h~   80 (170)
T 1c3g_A            2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQ-TGRRKTLQFVIQEKSHP   80 (170)
T ss_dssp             EEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSS-SSCBCEEEEEEEECCCS
T ss_pred             CEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCCccCCCEEEEeccccCCCC-CCccccEEEEEEEccCC
Confidence            789999999999999999887643    12     358999999999999999999986433 24689999999997654


Q ss_pred             C
Q 012541          335 D  335 (461)
Q Consensus       335 ~  335 (461)
                      .
T Consensus        81 ~   81 (170)
T 1c3g_A           81 N   81 (170)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=98.41  E-value=5.8e-07  Score=82.80  Aligned_cols=74  Identities=15%  Similarity=0.226  Sum_probs=59.5

Q ss_pred             ccceEEeeecCHHHHHcCCeeEEeeeC------------CeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEE
Q 012541          262 GLNLFSKISVDYTEAILGTSMEVETVE------------GMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVN  329 (461)
Q Consensus       262 G~DL~~~~~Isl~eAllG~~i~V~tld------------G~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~  329 (461)
                      +.|+.+++.|||.||+.|++..|.--.            -.++|+||+|+..|++++++|+|-+... .+..|||||+++
T Consensus         3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~-gg~~GDl~v~i~   81 (180)
T 2q2g_A            3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESP-GTSPGDLVLIIQ   81 (180)
T ss_dssp             -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTTCCTTCEEEETTCSCCSST-TSCCCEEEEEEE
T ss_pred             CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCC-CCccccEEEEEE
Confidence            679999999999999999998776321            2358999999999999999999977222 246899999999


Q ss_pred             EEcCCCC
Q 012541          330 VLIPKDI  336 (461)
Q Consensus       330 V~~P~~l  336 (461)
                      |.-...+
T Consensus        82 ~~~h~~F   88 (180)
T 2q2g_A           82 TKTHPRF   88 (180)
T ss_dssp             ECCCSSC
T ss_pred             EEecccE
Confidence            9755443

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=98.05  E-value=9.4e-08  Score=103.69  Aligned_cols=78  Identities=18%  Similarity=0.320  Sum_probs=59.9

Q ss_pred             ccccccccceeecceeeeeEEeeeeeccCCCCCCccccc---ccccCCCcCCccEEEEee--------ecCCcce-eeee
Q 012541          116 RYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSN---CIQSCKACWGRGGVLKTQ--------RTPFGLI-SQVS  183 (461)
Q Consensus       116 ~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~---~~~~C~~C~G~G~~~~~~--------~~~~g~~-~~~~  183 (461)
                      .+.+.|+|+|+++|.++++++.+.+.|..|+|+|++.+.   .+.+|+.|+|+.......        ..-.|.| +...
T Consensus       168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~  247 (669)
T 3pmq_A          168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS  247 (669)
T ss_dssp             SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred             eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence            478899999999999999999999999999999999887   689999999994211100        0111333 3346


Q ss_pred             cCCCCCCccE
Q 012541          184 TCSKCGGDGK  193 (461)
Q Consensus       184 ~C~~C~G~G~  193 (461)
                      .|..||..+.
T Consensus       248 ~C~~CH~~~~  257 (669)
T 3pmq_A          248 NCQTCHADNP  257 (669)
T ss_dssp             CCTTTSCCCT
T ss_pred             cchhhcCCcc
Confidence            7999998774

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.68  E-value=1.2e-05  Score=58.96  Aligned_cols=30  Identities=30%  Similarity=0.798  Sum_probs=26.8

Q ss_pred             eecCCCCCCccEEEeeeccccCCceEEeec
Q 012541          182 VSTCSKCGGDGKIIIDHCRRCGGNGEVQSK  211 (461)
Q Consensus       182 ~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~  211 (461)
                      .++|+.|+|+|+++.++|+.|+|.|++.+.
T Consensus         9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            9 ETTCPNCNGSGREEPEPCPKCLGKGVILTA   38 (53)
T ss_dssp             EEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred             eccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence            578999999999999999999999988664

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=97.61  E-value=4.9e-05  Score=58.17  Aligned_cols=40  Identities=13%  Similarity=-0.242  Sum_probs=34.2

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSD   46 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD   46 (461)
                      +++++|++|||+|-.++|||+..++   -.+..|++|+|+|-.
T Consensus        19 a~~~~Ik~~yr~Lm~~nhPDkGGS~---yl~~ki~~Ake~l~~   58 (65)
T 2guz_B           19 LNMDKINNRFNYLFEVNDKEKGGSF---YLQSKVYRAAERLKW   58 (65)
T ss_dssp             CSHHHHHHHHHHHHHHTCGGGTCCH---HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHHHH
Confidence            5789999999999999999997443   567789999999854

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.52  E-value=5e-05  Score=59.96  Aligned_cols=47  Identities=30%  Similarity=0.800  Sum_probs=37.4

Q ss_pred             cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEe--------eeccccCCceEEe
Q 012541          154 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEVQ  209 (461)
Q Consensus       154 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~g~v~  209 (461)
                      .....|+.|+|+|...         .....+|+.|+|+|.++.        ..|+.|+|.|.+.
T Consensus         9 ~~~~~C~~C~G~G~~~---------~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~   63 (79)
T 1exk_A            9 PTLEECDVCHGSGAKP---------GTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             CCEEECGGGTTTSBCS---------SSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred             ccceECCCCcccccCC---------CccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence            3568999999999742         122468999999999875        4799999999874

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.48  E-value=4.6e-05  Score=63.64  Aligned_cols=47  Identities=32%  Similarity=0.820  Sum_probs=37.3

Q ss_pred             eeeccCCCCCCcccc-----cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEee
Q 012541          139 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID  197 (461)
Q Consensus       139 ~~~C~~C~GsG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~  197 (461)
                      ...|+.|+|+|....     ....+|+.|+|+|.++.            .+|+.|+|.|.+...
T Consensus        45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~~   96 (104)
T 2ctt_A           45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII------------SPCVVCRGAGQAKQK   96 (104)
T ss_dssp             CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS------------SCCSSSSSCSEECCC
T ss_pred             CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC------------CcCCCCCCeeEEEEE
Confidence            468999999996521     23578999999998753            579999999988653

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.42  E-value=1.6e-05  Score=58.44  Aligned_cols=38  Identities=32%  Similarity=0.637  Sum_probs=26.1

Q ss_pred             eeeccCCCCCCcccccccccCCCcCCccEEEEee-ecCCcce
Q 012541          139 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQ-RTPFGLI  179 (461)
Q Consensus       139 ~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~-~~~~g~~  179 (461)
                      ...|+.|+|+|....   .+|+.|+|.|.+...+ ++++|++
T Consensus         9 ~~~C~~C~GsG~~~~---~~C~~C~G~G~v~~~qG~~~~g~~   47 (53)
T 2bx9_A            9 EVACPKCERAGEIEG---TPCPACSGKGVILTAQGYTLLDFI   47 (53)
T ss_dssp             EEECTTTTTSSEETT---EECTTTTTSSEEECHHHHHHHHHH
T ss_pred             cccCCCCcceeccCC---CCCccCCCCccEEEEecccHHHHH
Confidence            357888888887753   5788888888876655 4454444

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.97  E-value=0.00033  Score=51.29  Aligned_cols=28  Identities=32%  Similarity=0.769  Sum_probs=18.4

Q ss_pred             ecCCCCCCccEEEeeeccccCCceEEee
Q 012541          183 STCSKCGGDGKIIIDHCRRCGGNGEVQS  210 (461)
Q Consensus       183 ~~C~~C~G~G~~i~~~C~~C~G~g~v~~  210 (461)
                      .+|+.|+|+|.++..+|+.|+|.|.+..
T Consensus        10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~~   37 (53)
T 2bx9_A           10 VACPKCERAGEIEGTPCPACSGKGVILT   37 (53)
T ss_dssp             EECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred             ccCCCCcceeccCCCCCccCCCCccEEE
Confidence            4666666666666666777777766543

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=96.39  E-value=0.0018  Score=47.38  Aligned_cols=27  Identities=37%  Similarity=1.048  Sum_probs=14.8

Q ss_pred             eeccCCCCCCcccccccccCCCcCCccEEE
Q 012541          140 ETCDSCGGTGAKSSNCIQSCKACWGRGGVL  169 (461)
Q Consensus       140 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~  169 (461)
                      .+|+.|+|+|....   ..|+.|+|+|.+.
T Consensus        10 ~~C~~C~GsG~~i~---~~C~~C~G~G~v~   36 (53)
T 3lcz_A           10 TTCPNCNGSGREEP---EPCPKCLGKGVIL   36 (53)
T ss_dssp             EECTTTTTSCEETT---EECTTTTTSSEEE
T ss_pred             ccCcCCcccccCCC---CcCCCCCCcEEEE
Confidence            45666666665432   4455555555543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=80.57  E-value=0.63  Score=45.88  Aligned_cols=25  Identities=16%  Similarity=0.062  Sum_probs=21.8

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCCh
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKSP   28 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~~   28 (461)
                      +..++|+++|+++|+++|||+++++
T Consensus       394 ~~~~~~~~~y~~~~l~~~pd~~~~~  418 (450)
T 2y4t_A          394 AKKQEIIKAYRKLALQWHPDNFQNE  418 (450)
T ss_dssp             CCTTHHHHHHHHHHHHSCGGGCCSH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCc
Confidence            3578999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	461
d1exka_	79	g.54.1.1 (A:) Cysteine-rich domain of the chaperon	7e-15
d1c3ga2	90	b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba	8e-15
d1nlta3	74	g.54.1.1 (A:139-212) Mitochondrial protein import	9e-14
d1m1qa_	90	a.138.1.3 (A:) Flavocytochrome c3 (respiratory fum	7e-13
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	1e-11
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	2e-10
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	2e-09
d1c3ga1	80	b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba	1e-08
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	1e-07
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	5e-07
d1nlta1	74	b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei	1e-06
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-06
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	1e-05
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	9e-05
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	4e-04

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Length = 79

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

 Score = 67.4 bits (164), Expect = 7e-15
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 129 GGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC 188
           G  + I +   E CD C G+GAK     Q+C  C G        +   G  +   TC  C
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGS----GQVQMRQGFFAVQQTCPHC 56

Query: 189 GGDGKIIIDHCRRCGGNGEVQ 209
            G G +I D C +C G+G V+
Sbjct: 57  QGRGTLIKDPCNKCHGHGRVE 77

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.7 bits (165), Expect = 8e-15
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKD-LRIPSGVQPGDTVKLQQMGVPDINNP 318
           RDG +L   + + + E++LG S  ++T++G    L     VQP  T      G+P   NP
Sbjct: 4   RDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNP 63

Query: 319 SVRGDHLFIVNVLIPKDISDPERALVE 345
           S RG+ +    V  P  ++D ++  ++
Sbjct: 64  SQRGNLIVKYKVDYPISLNDAQKRAID 90

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.9 bits (155), Expect = 9e-14
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 141 TCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--DH 198
            C  C G G K    ++ C +C G+G    T++    +    + C  C G G II   D 
Sbjct: 4   LCKECEGRGGKK-GAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDR 62

Query: 199 CRRCGGNGEVQ 209
           C+ C G     
Sbjct: 63  CKSCNGKKVEN 73

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Length = 90

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

 Score = 62.1 bits (150), Expect = 7e-13
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 3/75 (4%)

Query: 140 ETCDSCGGTGAKSSNCI---QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 196
             C+SC   G  S++       C++C G+   +     P       + C           
Sbjct: 12  GGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQK 71

Query: 197 DHCRRCGGNGEVQSK 211
             C  C  +G   + 
Sbjct: 72  PTCESCHDDGRTSAS 86

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (140), Expect = 1e-11
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGM---KDLRIPSGVQPGDTVKLQQMGVPDIN 316
           RDG +L  +  +D   AI G    +E V G      +     + PG    ++  G+P   
Sbjct: 4   RDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPK 63

Query: 317 NPSVRGDHLFIVNVLIPK 334
                G+ +    +  P+
Sbjct: 64  YGG-YGNLIIKFTIKDPE 80

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (131), Expect = 2e-10
 Identities = 31/48 (64%), Positives = 38/48 (79%)

Query: 17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE 64
          +L YHPD NK PGAEEKFKEI+ AY+VLSD  KR ++DR+GE G+ G 
Sbjct: 28 ALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKGS 75

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 51.6 bits (123), Expect = 2e-09
 Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 20 YHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 61
          YHPD N+    AE KFKEI  AYEVL+D +KR+ YD++G A  
Sbjct: 31 YHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF 73

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (119), Expect = 1e-08
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 188 CGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLF 247
             G  K      +   G  E   K  + + + PG   G  +  + +G+++ +      L 
Sbjct: 15  FVGKKKSFKIGRKGPHGASE---KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQ 71

Query: 248 VALHVDE 254
             +    
Sbjct: 72  FVIQEKS 78

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 17 SLLYHPDINKSPGA----EEKFKEISSAYEVLSDDEKRSVY 53
           L+ HPD           +  F E++ A+    +  ++ +Y
Sbjct: 58 VLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 98

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 45.0 bits (106), Expect = 5e-07
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 6/44 (13%)

Query: 17 SLLYHPDINKSPGAEEK------FKEISSAYEVLSDDEKRSVYD 54
             YHPD   S    E+         I+ A++ L     R+ Y 
Sbjct: 28 QRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYL 71

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 319
           + G ++  +IS    E   G + ++     + ++ +  G++ G  +  +       +   
Sbjct: 2   QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPDVI- 60

Query: 320 VRGDHLFIVNV 330
             GD +FIV+ 
Sbjct: 61  -PGDVVFIVSE 70

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 17 SLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFG 57
          SLL HPD     G+    +E++S +     +      +  G
Sbjct: 38 SLLLHPDKG---GSHALMQELNSLWGTFKTEVYNLRMNLGG 75

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 31 EEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 63
           +KF EI  A+++L ++E +  YD       +G
Sbjct: 62 MQKFIEIDQAWKILGNEETKKKYDLQRSGPSSG 94

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 39.8 bits (92), Expect = 9e-05
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 34 FKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSD 89
           K++++ Y+ + D  K +    FG       +D     + G D +E +   F   +
Sbjct: 49 MKKMNTLYKKMEDGVKYAHQPDFGG-----FWDATEIPTYGTDEWEQWWNAFNEEN 99

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 17 SLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG 60
           L +HPD N      A E FK + +    L   EK++  D+  +  
Sbjct: 41 YLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQAFLDQNADRA 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	461
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.91
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	99.82
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.8
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.68
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.65
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.65
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.63
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.61
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.56
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.52
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.49
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.48
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.48
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.36
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.85
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	98.8
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.68
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.59
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	97.47
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.17
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	80.21

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.7e-25  Score=182.69  Aligned_cols=89  Identities=28%  Similarity=0.505  Sum_probs=84.9

Q ss_pred             cccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcCCC
Q 012541          257 GIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKD  335 (461)
Q Consensus       257 ~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~  335 (461)
                      .|+|+|+||+++++|++.||++|+++.|+|+||+ +.|+||+++++|++++|+|+|||..++++.+|||||+|+|++|++
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~   80 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPIS   80 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSS
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCC
Confidence            4999999999999999999999999999999995 689999999999999999999999877778999999999999999


Q ss_pred             CChhHHHHHH
Q 012541          336 ISDPERALVE  345 (461)
Q Consensus       336 ls~~q~~lle  345 (461)
                      ||++|+++||
T Consensus        81 ls~~qk~~lE   90 (90)
T d1c3ga2          81 LNDAQKRAID   90 (90)
T ss_dssp             CCTTHHHHTC
T ss_pred             CCHHHHHhhC
Confidence            9999999885

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=7.4e-21  Score=151.50  Aligned_cols=77  Identities=25%  Similarity=0.393  Sum_probs=71.4

Q ss_pred             cccccccceEEeeecCHHHHHcCCeeEEeeeCCe-EEEEeCCC--CCCCCEEEEccCCCCCCCCCCCCccEEEEEEEEcC
Q 012541          257 GIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG--VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIP  333 (461)
Q Consensus       257 ~f~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g--~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P  333 (461)
                      .|+|+|+||+++++|++.||++|++++|+|+||. +.++||++  +++|++++|+|+|||..+. +.+|||||+|+|++|
T Consensus         1 tF~R~G~dL~~~~~I~~~eal~G~~~~i~~~dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~-~~~GDL~v~~~V~~P   79 (80)
T d1nlta2           1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY-GGYGNLIIKFTIKDP   79 (80)
T ss_dssp             SCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSS-CSBCCEEEEEEEECC
T ss_pred             CcEEeCCEEEEEEEeCHHHHhCCCEEEEEecCcceEEEEeCCCCCcCCCCEEEecCCCCCCCCc-CCcCcEEEEEEEEcC
Confidence            4899999999999999999999999999999996 57788876  9999999999999999865 579999999999999


Q ss_pred             C
Q 012541          334 K  334 (461)
Q Consensus       334 ~  334 (461)
                      +
T Consensus        80 k   80 (80)
T d1nlta2          80 E   80 (80)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.6e-20  Score=147.69  Aligned_cols=60  Identities=43%  Similarity=0.656  Sum_probs=55.7

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCC-ChhhHHHHHHHHHHHhhccccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT   62 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~-~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~   62 (461)
                      -+++++|++||++||++||||+|+ +++++++|++|++||+|||||++|+.||+||+.++.
T Consensus        14 ~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~e   74 (75)
T d1xbla_          14 TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (75)
T ss_dssp             SCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSCC
T ss_pred             CcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccccC
Confidence            478999999999999999999998 478899999999999999999999999999988764

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.6e-20  Score=145.27  Aligned_cols=61  Identities=51%  Similarity=0.827  Sum_probs=58.0

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG   63 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~~~   63 (461)
                      -+++++|++||++|+++||||+++++++.++|++|++||+||+||++|+.||+||++++++
T Consensus        14 ~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~g   74 (77)
T d1hdja_          14 GASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             TCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcC
Confidence            4689999999999999999999999999999999999999999999999999999998864

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.68  E-value=3.4e-18  Score=144.89  Aligned_cols=54  Identities=24%  Similarity=0.270  Sum_probs=49.1

Q ss_pred             ChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccccccc
Q 012541            5 MPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI   61 (461)
Q Consensus         5 ~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g~   61 (461)
                      +.++||+|||+||++||||+|+++   ++|++|++||+|||||+||+.||.+|....
T Consensus        23 ~~~~IKkAYrkla~k~HPDk~~~~---e~F~~I~~AY~vLsd~~kR~~YD~~~~~~~   76 (114)
T d1gh6a_          23 NIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKMEDGVKYAHQPDFGGFWD   76 (114)
T ss_dssp             CHHHHHHHHHHTTTTCCTTTCCTT---TTTHHHHHHHHHHHHHHHSCCSSCCSCCCC
T ss_pred             CHHHHHHHHHHHHHHhcccchhhH---HHHHHHHHHHHHhCCHHHHHHHhccCCCCc
Confidence            578999999999999999999754   689999999999999999999999987543

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.6e-17  Score=135.91  Aligned_cols=56  Identities=27%  Similarity=0.392  Sum_probs=50.6

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCC-------hhhHHHHHHHHHHHhhccccccccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKS-------PGAEEKFKEISSAYEVLSDDEKRSVYDRFGE   58 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~-------~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~   58 (461)
                      -+++++||+||++||++||||+|+.       +.++++|++|++||+||+||++|+.||+...
T Consensus        27 ~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          27 SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             TCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            4689999999999999999999873       4588999999999999999999999998643

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=7.7e-17  Score=127.90  Aligned_cols=80  Identities=14%  Similarity=0.347  Sum_probs=67.9

Q ss_pred             cccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 012541          113 LDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG  192 (461)
Q Consensus       113 ~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G  192 (461)
                      +||+++|.|||||+|+|+++++++.+.    .|+|                 .+                          
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~----~~~g-----------------~~--------------------------   33 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRK----GPHG-----------------AS--------------------------   33 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEE----ETTT-----------------EE--------------------------
T ss_pred             CCEEEEeEEEHHHHhCCCceEeeccee----cccC-----------------CC--------------------------
Confidence            368899999999999999999988643    1211                 11                          


Q ss_pred             EEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecc
Q 012541          193 KIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ  256 (461)
Q Consensus       193 ~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~  256 (461)
                                       +.++++|.||||+++|++|+|+|+|+....++.+|||+|+|++++||
T Consensus        34 -----------------~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~~~~HP   80 (80)
T d1c3ga1          34 -----------------EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHP   80 (80)
T ss_dssp             -----------------EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCS
T ss_pred             -----------------ceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEEeCCCC
Confidence                             24679999999999999999999999987778899999999999997

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1.1e-16  Score=126.67  Aligned_cols=78  Identities=37%  Similarity=0.830  Sum_probs=70.7

Q ss_pred             ceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEE
Q 012541          129 GGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEV  208 (461)
Q Consensus       129 G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v  208 (461)
                      |++++|.|.+.+.|+.|+|+|++.+..+.+|+.|+|+|++..    ..|++++.++|+.|+|+|++|.++|..|+|+|++
T Consensus         1 G~~k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~----~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v   76 (79)
T d1exka_           1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQM----RQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV   76 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEE----EETTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred             CceEEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEE----ecccceeeEECcccCcceeECCCCCCCCCCceEe
Confidence            678999999999999999999999989999999999998743    3467778889999999999999999999999988


Q ss_pred             ee
Q 012541          209 QS  210 (461)
Q Consensus       209 ~~  210 (461)
                      ++
T Consensus        77 ~k   78 (79)
T d1exka_          77 ER   78 (79)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=3.9e-16  Score=121.93  Aligned_cols=74  Identities=20%  Similarity=0.422  Sum_probs=66.1

Q ss_pred             CCCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCC
Q 012541          109 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC  188 (461)
Q Consensus       109 ~~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C  188 (461)
                      ++++.|++++|.|||+|||+|+++++.+.                                                   
T Consensus         1 Prkg~di~~~l~isleea~~G~~~~~~~~---------------------------------------------------   29 (74)
T d1nlta1           1 PQRGKDIKHEISASLEELYKGRTAKLALN---------------------------------------------------   29 (74)
T ss_dssp             CCBCCCEEEEEEECTTHHHHCEEEEEEEE---------------------------------------------------
T ss_pred             CCCCCCEEEEEEecHHHHHhhcccceeec---------------------------------------------------
Confidence            35789999999999999999999987653                                                   


Q ss_pred             CCccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEEecc
Q 012541          189 GGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ  256 (461)
Q Consensus       189 ~G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h~  256 (461)
                                            .+.++|+||+|+++|++|+|+|+|++.+ ++.+|||+|+|++++|+
T Consensus        30 ----------------------~~~~~i~Ip~G~~~G~~ir~~g~G~~~~-~~~~GDl~v~i~~~pHk   74 (74)
T d1nlta1          30 ----------------------RKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHK   74 (74)
T ss_dssp             ----------------------EEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCS
T ss_pred             ----------------------CccEEEEecccccCCeEEEecCCcCCCC-CCCCCCEEEEEEecCCC
Confidence                                  2468999999999999999999999975 67899999999999995

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=3.7e-16  Score=128.56  Aligned_cols=51  Identities=20%  Similarity=0.333  Sum_probs=47.0

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCCh----hhHHHHHHHHHHHhhcccccccccc
Q 012541            3 VRMPRCRRSRPLTESLLYHPDINKSP----GAEEKFKEISSAYEVLSDDEKRSVY   53 (461)
Q Consensus         3 ~~~~~~Ir~Ayr~LA~kyHPD~N~~~----~aeekFkeI~eAYEVLsD~~KR~~Y   53 (461)
                      +.++.+||+||++||++||||+|+++    .|++.|++|++||+||+||++|+.|
T Consensus        44 ~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          44 LVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            57899999999999999999998753    3788999999999999999999998

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.2e-15  Score=119.61  Aligned_cols=54  Identities=24%  Similarity=0.259  Sum_probs=47.1

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHhhccccccccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG   60 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~--~~aeekFkeI~eAYEVLsD~~KR~~YD~~G~~g   60 (461)
                      ++.++||+|||+||++||||+|++  +.|+++|++|++||++|+   +|+.||++....
T Consensus        28 as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~~~~   83 (88)
T d1iura_          28 LPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAFLDQNADRA   83 (88)
T ss_dssp             SCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHH---HHTTCSSSSSCS
T ss_pred             CCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH---HHHHhhccchHh
Confidence            688999999999999999999985  468999999999999997   467788766543

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.49  E-value=2.9e-15  Score=118.12  Aligned_cols=50  Identities=20%  Similarity=0.169  Sum_probs=45.8

Q ss_pred             ChHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHhhcccccccccccccc
Q 012541            5 MPRCRRSRPLTESLLYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFG   57 (461)
Q Consensus         5 ~~~~Ir~Ayr~LA~kyHPD~N~~~~aeekFkeI~eAYEVLsD~~KR~~YD~~G   57 (461)
                      ++++|++||++||++||||++.+   +++|++|++||++|+|+.+|..||.-+
T Consensus        26 ~~~~IkkaYr~l~~~~HPDk~g~---~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_          26 DFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             CHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             CHHHHHHHHHHHHHHhCcccCCC---HHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            78899999999999999999854   579999999999999999999999743

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=5.5e-15  Score=115.86  Aligned_cols=52  Identities=23%  Similarity=0.160  Sum_probs=46.1

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCC------hhhHHHHHHHHHHHhhcccccccccccc
Q 012541            4 RMPRCRRSRPLTESLLYHPDINKS------PGAEEKFKEISSAYEVLSDDEKRSVYDR   55 (461)
Q Consensus         4 ~~~~~Ir~Ayr~LA~kyHPD~N~~------~~aeekFkeI~eAYEVLsD~~KR~~YD~   55 (461)
                      .++++|++||++||++||||++..      ..|++.|+.|++||+||+||.+|+.|+.
T Consensus        15 ~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1          15 LDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             CCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            357899999999999999999753      2377889999999999999999999974

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=1.7e-14  Score=112.46  Aligned_cols=72  Identities=28%  Similarity=0.609  Sum_probs=63.5

Q ss_pred             eeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEe--eeccccCCceEEee
Q 012541          138 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--DHCRRCGGNGEVQS  210 (461)
Q Consensus       138 r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--~~C~~C~G~g~v~~  210 (461)
                      |.++|+.|+|+|++.+. ..+|+.|+|+|+++...++.++++++..+|+.|+|+|+++.  ++|..|+|+|++++
T Consensus         1 r~v~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~E   74 (74)
T d1nlta3           1 KQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENE   74 (74)
T ss_dssp             EEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred             CccCCcCCcccccCCCC-CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeCC
Confidence            56899999999998765 67899999999999988888877777889999999999875  46999999998764

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=8.3e-13  Score=102.69  Aligned_cols=70  Identities=17%  Similarity=0.323  Sum_probs=64.2

Q ss_pred             ccccceEEeeecCHHHHHcCCeeEEeeeCCeEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEE
Q 012541          260 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVL  331 (461)
Q Consensus       260 R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~  331 (461)
                      |+|.|++++++|||.||++|+++.|.+..+.+.|+||+|+++|++++++|+|.+..+  +.+|||+|++++.
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~~~~~~i~Ip~G~~~G~~ir~~g~G~~~~~--~~~GDl~v~i~~~   71 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPD--VIPGDVVFIVSER   71 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTT--CBCCCEEEEEEEC
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeecCccEEEEecccccCCeEEEecCCcCCCCC--CCCCCEEEEEEec
Confidence            689999999999999999999999998888889999999999999999999998753  4689999999874

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=5e-10  Score=89.87  Aligned_cols=81  Identities=27%  Similarity=0.338  Sum_probs=66.6

Q ss_pred             CCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCC
Q 012541          110 NFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCG  189 (461)
Q Consensus       110 ~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  189 (461)
                      ++|.|+.+.+.|||.||+.|+++++..-                                                    
T Consensus         4 R~G~DL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------   31 (90)
T d1c3ga2           4 RDGDDLIYTLPLSFKESLLGFSKTIQTI----------------------------------------------------   31 (90)
T ss_dssp             EETTEEEEEECCBHHHHHHCEEEEEECS----------------------------------------------------
T ss_pred             EeCCeEEEEEEeCHHHHhcCCeEEEecc----------------------------------------------------
Confidence            4678999999999999999999776431                                                    


Q ss_pred             CccEEEeeeccccCCceEEeecceEEEEeCCCCCCCCEEEEcccccCCC-CCCCCccEEEEEEEEecccccccc
Q 012541          190 GDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR-RRSLAGDLFVALHVDEKQGIHRDG  262 (461)
Q Consensus       190 G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~Gv~~G~~i~l~G~G~~~~-~g~~~GDL~V~i~v~~h~~f~R~G  262 (461)
                                          ..+.++|+||+|+++|++++++|+|.+.. ..+..|||||+++|.-+..+..+.
T Consensus        32 --------------------dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~ls~~q   85 (90)
T d1c3ga2          32 --------------------DGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQ   85 (90)
T ss_dssp             --------------------SSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTH
T ss_pred             --------------------cccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCCCCHHH
Confidence                                12578999999999999999999999754 335689999999999777665544

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=1.5e-09  Score=85.11  Aligned_cols=74  Identities=26%  Similarity=0.394  Sum_probs=61.8

Q ss_pred             CCCcccccccccccceeecceeeeeEEeeeeeccCCCCCCcccccccccCCCcCCccEEEEeeecCCcceeeeecCCCCC
Q 012541          110 NFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCG  189 (461)
Q Consensus       110 ~~g~di~~~l~lslee~~~G~~k~i~~~r~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  189 (461)
                      +.|.|+.++++|||.||+.|+++++...                                                    
T Consensus         4 R~G~dL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------   31 (80)
T d1nlta2           4 RDGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------------------   31 (80)
T ss_dssp             EETTEEEEEEEEEHHHHHHCBCCEEECS----------------------------------------------------
T ss_pred             EeCCEEEEEEEeCHHHHhCCCEEEEEec----------------------------------------------------
Confidence            4578999999999999999998776432                                                    


Q ss_pred             CccEEEeeeccccCCceEEeecceEEEEeCCC--CCCCCEEEEcccccCCCCCCCCccEEEEEEEEec
Q 012541          190 GDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPG--VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEK  255 (461)
Q Consensus       190 G~G~~i~~~C~~C~G~g~v~~~k~l~V~IP~G--v~~G~~i~l~G~G~~~~~g~~~GDL~V~i~v~~h  255 (461)
                                          ..+.++|.||++  +++|++++++|+|.+...++..|||||+++|+-+
T Consensus        32 --------------------dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~V~~P   79 (80)
T d1nlta2          32 --------------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDP   79 (80)
T ss_dssp             --------------------SSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECC
T ss_pred             --------------------CcceEEEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcEEEEEEEEcC
Confidence                                124677778877  9999999999999988777789999999999754

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=3e-08  Score=77.40  Aligned_cols=68  Identities=13%  Similarity=0.269  Sum_probs=56.3

Q ss_pred             cceEEeeecCHHHHHcCCeeEEe----eeCCe-----EEEEeCCCCCCCCEEEEccCCCCCCCCCCCCccEEEEEEEE
Q 012541          263 LNLFSKISVDYTEAILGTSMEVE----TVEGM-----KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVL  331 (461)
Q Consensus       263 ~DL~~~~~Isl~eAllG~~i~V~----tldG~-----~~l~Ip~g~q~G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~  331 (461)
                      .||..++.|||.||..|++..|.    ..+|.     +.|.||||+++|++++++|+|...... +.+|||+|.+++.
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~~~g~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~~~i~~~   77 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEK   77 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSS-SCBCEEEEEEEEC
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceecccCCCceEEEEEEECCCCCCCcEEEECCccccCcCC-CCCCCEEEEEEeC
Confidence            47899999999999999987664    33542     478899999999999999999876543 4689999999875

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1e-05  Score=62.50  Aligned_cols=46  Identities=37%  Similarity=0.873  Sum_probs=36.6

Q ss_pred             eeeccCCCCCCcccc-----cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEe
Q 012541          139 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII  196 (461)
Q Consensus       139 ~~~C~~C~GsG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~  196 (461)
                      ...|+.|+|+|....     ....+|+.|+|+|.++.            .+|+.|+|+|.+.+
T Consensus        28 ~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~k   78 (79)
T d1exka_          28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK------------DPCNKCHGHGRVER   78 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS------------SBCGGGTTSSEEEC
T ss_pred             ceeCCCccceeEEEEecccceeeEECcccCcceeECC------------CCCCCCCCceEeec
Confidence            457999999996532     24568999999999753            57999999998864

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=97.47  E-value=1.3e-06  Score=69.08  Aligned_cols=69  Identities=19%  Similarity=0.439  Sum_probs=54.0

Q ss_pred             eccCCCCCCccccc---ccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEEEeeeccccCCceEEe
Q 012541          141 TCDSCGGTGAKSSN---CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQ  209 (461)
Q Consensus       141 ~C~~C~GsG~~~~~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~  209 (461)
                      .|.+|+|.|.....   ....|..|+|.|......+..++.+..-..|..|+|.|..+...|..|++.|++.
T Consensus        13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~~   84 (90)
T d1m1qa_          13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTS   84 (90)
T ss_dssp             CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCCH
T ss_pred             CCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCccc
Confidence            59999999865433   3467999999998655555555555556889999999999999999999998754

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=5.4e-05  Score=57.54  Aligned_cols=45  Identities=29%  Similarity=0.759  Sum_probs=34.4

Q ss_pred             eeccCCCCCCcccc---------cccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEE
Q 012541          140 ETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI  194 (461)
Q Consensus       140 ~~C~~C~GsG~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  194 (461)
                      ..|+.|+|+|....         ....+|+.|+|+|.++.          ...+|..|+|.|.+
T Consensus        19 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~----------~~~~C~~C~G~g~v   72 (74)
T d1nlta3          19 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID----------PKDRCKSCNGKKVE   72 (74)
T ss_dssp             CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC----------TTSBCSSSTTSCEE
T ss_pred             CCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeC----------CCCCCCCCCCeeEe
Confidence            46999999997532         23568999999998643          12579999999965

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=80.21  E-value=0.11  Score=39.46  Aligned_cols=43  Identities=26%  Similarity=0.530  Sum_probs=29.5

Q ss_pred             eeccCCCCCCccccc---------ccccCCCcCCccEEEEeeecCCcceeeeecCCCCCCccEE
Q 012541          140 ETCDSCGGTGAKSSN---------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI  194 (461)
Q Consensus       140 ~~C~~C~GsG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  194 (461)
                      ..|..|+|++.....         .-..|..|+|.|..+            ...|..|++.|+.
T Consensus        32 ~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~------------~~~C~~CH~~gr~   83 (90)
T d1m1qa_          32 AQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQ------------KPTCESCHDDGRT   83 (90)
T ss_dssp             HHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTC------------CCCSTTTCSSCCC
T ss_pred             CcCcccCCCceeEeeccccccCccccccCccccCCCCcC------------CCccccccCCCcc
Confidence            469999999875321         235677777766432            2579999999864