Citrus Sinensis ID: 012547
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 461 | 2.2.26 [Sep-21-2011] | |||||||
| Q8S0G4 | 456 | Probable glycerol-3-phosp | yes | no | 0.971 | 0.982 | 0.830 | 0.0 | |
| Q8S2G5 | 467 | Probable glycerol-3-phosp | no | no | 0.954 | 0.942 | 0.831 | 0.0 | |
| O22216 | 462 | Glycerol-3-phosphate dehy | yes | no | 0.973 | 0.971 | 0.832 | 0.0 | |
| Q65X70 | 465 | Probable glycerol-3-phosp | no | no | 0.934 | 0.926 | 0.822 | 0.0 | |
| B3EI28 | 333 | Glycerol-3-phosphate dehy | yes | no | 0.546 | 0.756 | 0.259 | 2e-13 | |
| Q8KG76 | 333 | Glycerol-3-phosphate dehy | yes | no | 0.546 | 0.756 | 0.258 | 1e-12 | |
| Q3V7H1 | 357 | Glycerol-3-phosphate dehy | yes | no | 0.514 | 0.663 | 0.318 | 4e-12 | |
| Q0SE35 | 335 | Glycerol-3-phosphate dehy | yes | no | 0.603 | 0.829 | 0.252 | 5e-12 | |
| P61738 | 331 | Glycerol-3-phosphate dehy | yes | no | 0.646 | 0.900 | 0.225 | 7e-12 | |
| B2V3Z2 | 330 | Glycerol-3-phosphate dehy | yes | no | 0.557 | 0.778 | 0.253 | 1e-11 |
| >sp|Q8S0G4|GPDH1_ORYSJ Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic OS=Oryza sativa subsp. japonica GN=Os01g0939600 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/453 (83%), Positives = 412/453 (90%), Gaps = 5/453 (1%)
Query: 11 SLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR 70
S+ NG ++ NG+ EERLDELRRL+GK++GD L+IVG+GAGAWGSVF A+LQD+YG R
Sbjct: 4 SVHVNGSVNGGNGT-EERLDELRRLLGKSDGDLLKIVGIGAGAWGSVFAALLQDAYGRFR 62
Query: 71 DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADE 130
+KV IRIWRR GRSVDR TAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTL+ADE
Sbjct: 63 EKVQIRIWRRAGRSVDRTTAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADE 122
Query: 131 ILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV 190
IL+DGFCLNMIDTPLCPLKVVTNLQEAVWDADIV+NGLPSTET+EVFEEIS+YWKERI+V
Sbjct: 123 ILRDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERISV 182
Query: 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI 250
PVIISLAKG+EA L+ +PRIITPTQMI+ ATGVP ENILYLGGPNIASEIYNKEYANARI
Sbjct: 183 PVIISLAKGIEASLDPIPRIITPTQMISSATGVPTENILYLGGPNIASEIYNKEYANARI 242
Query: 251 CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIG----AALTNESATSKSV 306
CG+ KWRKPLAKFLR+PHF VWDN DLVTHEVMGGLKNVYAIG AALTNESATSKSV
Sbjct: 243 CGSNKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 302
Query: 307 YFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSI 366
YFAHCTSEM+FITHLL E+PEKLAGPLLADTYVTLLKGRNAWYGQ LAKG L+ D+GDSI
Sbjct: 303 YFAHCTSEMIFITHLLTEQPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELSPDMGDSI 362
Query: 367 KGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQA 426
KGKGMIQGISAV AF+ELLSQ SLSV HPEENK VA ELCPILK LY+ILI RE +
Sbjct: 363 KGKGMIQGISAVGAFFELLSQPSLSVQHPEENKQVAPAELCPILKRLYRILIKRELSTRD 422
Query: 427 ILEALRDETMNDPRDRIEIAQTHVFYRPSLLGQ 459
IL+ALRDETMNDPR+RIE+AQ+H FYRPSLLG+
Sbjct: 423 ILQALRDETMNDPRERIEMAQSHAFYRPSLLGK 455
|
May be involved in cell redox homeostasis. Oryza sativa subsp. japonica (taxid: 39947) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8 |
| >sp|Q8S2G5|GPDH2_ORYSJ Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 2, cytosolic OS=Oryza sativa subsp. japonica GN=Os01g0801600 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/445 (83%), Positives = 410/445 (92%), Gaps = 5/445 (1%)
Query: 20 HTNG-SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW 78
H NG ++EE+LDELRRL+GKA+GDPLRIVGVGAGAWGSVF A++QD+YG+LRDKV +RIW
Sbjct: 16 HGNGATVEEKLDELRRLLGKADGDPLRIVGVGAGAWGSVFCALMQDAYGHLRDKVQVRIW 75
Query: 79 RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCL 138
RRPGR+VDRATAEHLFEVIN+REDVLRRLIRRCAYLKYVE RLGDRTL+ADEIL+DGFCL
Sbjct: 76 RRPGRAVDRATAEHLFEVINAREDVLRRLIRRCAYLKYVEGRLGDRTLYADEILRDGFCL 135
Query: 139 NMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198
NMIDTPLCPLKVVTNLQEAVWDADIVINGLPST+T+EVF EI RYWKERIT P+I+SLAK
Sbjct: 136 NMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAK 195
Query: 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRK 258
G+EA L+ +PRIITPTQMI+ ATGVP+ENILYLGGPNIASEIYNKEYANARICGA+KWRK
Sbjct: 196 GIEASLDPLPRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRK 255
Query: 259 PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIG----AALTNESATSKSVYFAHCTSE 314
PLAKFLR+PHF VWDN DL+THEVMGGLKNVYAIG AALTNESATSKSVYFA CTSE
Sbjct: 256 PLAKFLRQPHFIVWDNSDLITHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFALCTSE 315
Query: 315 MVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQG 374
M++ITHLL EEPEKLAGPLLADTYVTLLKGRNAWYGQ+LAKG LTL++GDSIKGKG IQG
Sbjct: 316 MIYITHLLEEEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQG 375
Query: 375 ISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDE 434
+SAV AFYELLSQ SLSV+HPE N+ VA VE+CPILK LYKILI RE P +IL+A+RDE
Sbjct: 376 VSAVNAFYELLSQDSLSVMHPEANRSVAPVEMCPILKALYKILIKRELPPDSILQAIRDE 435
Query: 435 TMNDPRDRIEIAQTHVFYRPSLLGQ 459
TM DPR+RIE+AQ H YRPSLLGQ
Sbjct: 436 TMYDPRERIEMAQGHSLYRPSLLGQ 460
|
May be involved in cell redox homeostasis. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|O22216|GPDHC_ARATH Glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic OS=Arabidopsis thaliana GN=GPDHC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/453 (83%), Positives = 410/453 (90%), Gaps = 4/453 (0%)
Query: 11 SLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR 70
SL SNG +HH +LEE+LDE RRL+GK+E DPLRIV VGAGAWGSVF A+LQ+SYG R
Sbjct: 9 SLQSNGSVHHIGLNLEEKLDEFRRLLGKSEKDPLRIVSVGAGAWGSVFAALLQESYGGFR 68
Query: 71 DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADE 130
DK IRIWRR GR+VDR TAEHLFEVINSRED+LRRLIRRCAYLKYVEARLGDRTL+ADE
Sbjct: 69 DKFQIRIWRRAGRAVDRETAEHLFEVINSREDILRRLIRRCAYLKYVEARLGDRTLYADE 128
Query: 131 ILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV 190
ILKDGFCLNM+DTPLCPLKVVTNLQEAVWDADIV+NGLPSTET+EVFEEIS+YWKERITV
Sbjct: 129 ILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERITV 188
Query: 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI 250
P+IISL+KG+E LE VP IITPT+MI++ATGVPI+N+LYLGGPNIA+EIYNKEYANARI
Sbjct: 189 PIIISLSKGIETALEPVPHIITPTKMIHQATGVPIDNVLYLGGPNIAAEIYNKEYANARI 248
Query: 251 CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIG----AALTNESATSKSV 306
CGA KWRKPLAKFLR+PHF VWDN DLVTHEVMGGLKNVYAIG AALTNESATSKSV
Sbjct: 249 CGAAKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 308
Query: 307 YFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSI 366
YFAHCTSEM+FITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQ LAKG + D+GDSI
Sbjct: 309 YFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGEINRDMGDSI 368
Query: 367 KGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQA 426
GKGMIQG+SAV AFY+LLSQSSLS+L EE KPVA VE CPILK LYKILI RE QA
Sbjct: 369 SGKGMIQGVSAVGAFYQLLSQSSLSILPSEEKKPVAPVESCPILKTLYKILITREQSTQA 428
Query: 427 ILEALRDETMNDPRDRIEIAQTHVFYRPSLLGQ 459
IL+ALRDET+NDPRDRIEIAQ+H FYRPSLLGQ
Sbjct: 429 ILQALRDETLNDPRDRIEIAQSHAFYRPSLLGQ 461
|
Involved in cell redox homeostasis. Required for maintaining a steady state cellular NADH/NAD(+) ratio through a mitochondrial glycerol-3-phosphate redox shuttle. May function with the mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase SDP6 to shuttle reducing equivalents into the mitochondria for respiration. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q65X70|GPDH3_ORYSJ Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 3, cytosolic OS=Oryza sativa subsp. japonica GN=Os05g0495700 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/435 (82%), Positives = 393/435 (90%), Gaps = 4/435 (0%)
Query: 28 RLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87
+LDELRR MGKA+GD LRIVGVG GAWGS F A+LQD+YG RDK +R+WRRPGR+VDR
Sbjct: 22 KLDELRRRMGKADGDLLRIVGVGGGAWGSAFCALLQDAYGRHRDKAQVRVWRRPGRAVDR 81
Query: 88 ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCP 147
ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTL+ADEIL+DGFCLNM+DTPLCP
Sbjct: 82 ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMVDTPLCP 141
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
LKVVTNLQEAVWDADIVINGLPSTET+EVF EI RYWKERI PVIISLAKG+EA ++ V
Sbjct: 142 LKVVTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVIISLAKGIEASIDPV 201
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRP 267
PRIITPTQMI+ ATGVP+ENILYLGGPNIASEIYNKEYANARICGA+KWRKPLAKFLR+P
Sbjct: 202 PRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQP 261
Query: 268 HFTVWDNGDLVTHEVMGGLKNVYAIG----AALTNESATSKSVYFAHCTSEMVFITHLLA 323
HF VWDN DL+THEVMGGLKN+YAIG AALTNESATSKSVYF+ CTSEM++ITHLLA
Sbjct: 262 HFIVWDNSDLITHEVMGGLKNIYAIGAGMVAALTNESATSKSVYFSLCTSEMIYITHLLA 321
Query: 324 EEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYE 383
E+PEKLAGPLLADTYVTLLKGRNAWYGQ+LAKG LTL++GDSIKGKG IQG+SAV AFYE
Sbjct: 322 EDPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVHAFYE 381
Query: 384 LLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDETMNDPRDRI 443
LLSQSSLSV HPE K VA VELCPILK LYKILI RE +IL+A+RDE+M DPR+RI
Sbjct: 382 LLSQSSLSVTHPEVKKLVAPVELCPILKTLYKILIKRELATDSILQAIRDESMYDPRERI 441
Query: 444 EIAQTHVFYRPSLLG 458
E++Q YRPSLLG
Sbjct: 442 EMSQRQCLYRPSLLG 456
|
May be involved in cell redox homeostasis. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|B3EI28|GPDA_CHLL2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 136/305 (44%), Gaps = 53/305 (17%)
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE---- 203
L+V T+L EAV AD+V+ +PS +E E+I + VI+++AKG+E +
Sbjct: 58 LRVFTSLHEAVSPADMVVTAVPSQALRETVEQIRDLPMQG---RVIVNVAKGIELKTGKR 114
Query: 204 -----LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRK 258
LEA+P GV I + L GP+ A E+ +KE + +
Sbjct: 115 MSEVLLEALP-------------GVRISGVAALYGPSHAEEV-SKEQPTTVVASSPSVET 160
Query: 259 P--LAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTS 313
+ + F V+ N D++ E+ G +KN+ AI A +++ +K+ +
Sbjct: 161 ANRVQEVFHTSMFRVYTNTDIIGVEIAGSVKNIIAIAAGISDGIGYGDNAKAAIITRGLA 220
Query: 314 EMVFITHLLAEEPEKLAG-PLLADTYVTLLK--GRNAWYGQELAKGRLTLDLGDSIKGKG 370
EM + L +P ++G + D VT L RN + G+E+ +GR L D +
Sbjct: 221 EMSRLAVSLGGDPVTVSGLAGIGDLVVTCLSRHSRNRYVGEEIGRGR---SLDDVVAHMN 277
Query: 371 MI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE 429
M+ +G+ KA Y+L + + PI + +Y++L + QAIL+
Sbjct: 278 MVAEGVFTSKAVYDLSRTKGVEM---------------PITQAVYEMLFEGKPVQQAILD 322
Query: 430 ALRDE 434
+ E
Sbjct: 323 LMTRE 327
|
Chlorobium limicola (strain DSM 245 / NBRC 103803) (taxid: 290315) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|Q8KG76|GPDA_CHLTE Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 138/313 (44%), Gaps = 61/313 (19%)
Query: 148 LKVVTNLQEAVWDADIVINGLPS---TETKEVFEEISRYWKERITVPVIISLAKGVEAE- 203
L+VV NL +AV A++++ +PS ET F + K +I+++AKG+E
Sbjct: 58 LRVVENLHDAVETAEMIVTAVPSHALRETAAAFAHLPLDGK------IIVNVAKGIEQHT 111
Query: 204 --------LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AE 254
LEA+PRI E I L GP+ A E+ ++ C +E
Sbjct: 112 GKRMSEVLLEALPRIAP-------------EQIAVLYGPSHAEEVARQQPTTVVACSVSE 158
Query: 255 KWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHC 311
+ + + F V+ N DL+ E+ G +KNV AI A +++ +K+
Sbjct: 159 ATARRVQEAFHTSSFRVYVNTDLIGVEIAGSVKNVIAIAAGISDGLGFGDNAKAAIITRG 218
Query: 312 TSEMVFITHLLAEEPEKLAG-PLLADTYVTLLK--GRNAWYGQELAKGRLTLDLGDSIKG 368
+E+ ++ L +P L+G + D VT L RN + G+++ KGR L + I
Sbjct: 219 LAEISRLSSKLGADPLTLSGLSGIGDLVVTCLSQHSRNRYVGEQIGKGR---KLDEVIGE 275
Query: 369 KGMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAI 427
M+ +G+ KA +L + + + PI + +Y++L + QAI
Sbjct: 276 MSMVAEGVLTSKAVVKLAERLGVEM---------------PISQAVYEMLYENKPAPQAI 320
Query: 428 LEALRDETMNDPR 440
LE + DP+
Sbjct: 321 LELME----RDPK 329
|
Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|Q3V7H1|GPDA_ACIAD Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Acinetobacter sp. (strain ADP1) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 117/261 (44%), Gaps = 24/261 (9%)
Query: 128 ADEILKDGFCLNMI-DTPLCP-LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185
ADEI + F + D L P LK V++L+ AV D DI+ +PS +EV ++IS Y
Sbjct: 56 ADEINQTHFNQRYLPDFNLEPELKAVSDLELAVRDRDIIFVAIPSHSFREVVKQISPY-- 113
Query: 186 ERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY 245
IT I+SL KG+EA + I ++ GV L GPN+A EI
Sbjct: 114 --ITAQAIVSLTKGIEANTFSFMSDIIREELPEVPYGV-------LSGPNLAKEIVAGMP 164
Query: 246 ANARICG-AEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIG---AALTNESA 301
+ I +E R + L F V+ + D+ E+ G LKN+YAI AA N
Sbjct: 165 SGTVIASDSELVRYAVQHALHSALFRVFGSDDVHGVELGGALKNIYAIAMGMAAAYNIGE 224
Query: 302 TSKSVYFAHCTSEMVFITHLLAEEPEKLAG-PLLADTYVTLLK--GRNAWYGQELAKGRL 358
+KS+ +EM L P G + D + T RN G L G+
Sbjct: 225 NTKSMIITRALAEMSRFAVKLGANPLTFLGLSGVGDLFATCNSPLSRNYQIGYALGSGK- 283
Query: 359 TLDLGDSIKGKGMI-QGISAV 378
TLD +IK G +GI+ +
Sbjct: 284 TLD--QAIKALGQTAEGINTI 302
|
Acinetobacter sp. (strain ADP1) (taxid: 62977) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|Q0SE35|GPDA1_RHOSR Glycerol-3-phosphate dehydrogenase [NAD(P)+] 1 OS=Rhodococcus sp. (strain RHA1) GN=gpsA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 146/353 (41%), Gaps = 75/353 (21%)
Query: 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102
P+R+V +GAG+WG+ + + L +W R + D EH NSR
Sbjct: 4 PVRVVVLGAGSWGTTVAGLAAHNTPTL-------LWARNSDTADEINNEHR----NSR-- 50
Query: 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDAD 162
LGDR L ++ +L EA +AD
Sbjct: 51 -----------------YLGDRPLPDS------------------MRSTADLVEAAHEAD 75
Query: 163 IVINGLPSTETKEVFEEIS---RYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINR 219
+++ G+PS + +I+ R W VPV +SLAKG+E + PT++I
Sbjct: 76 VLVVGVPSHAVRSTLAQIANEVRAW-----VPV-LSLAKGLEPGTR-----LRPTEVI-- 122
Query: 220 ATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR--KPLAKFLRRPHFTVWDNGDL 277
A +P + L GPNIA EI + A A + + R L F V+ N D+
Sbjct: 123 AECLPGHPVGLLAGPNIAREIVDG-LAAASVVATQDVRVATALQPLFASAVFRVYRNTDV 181
Query: 278 VTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAG-PL 333
+ E+ G LKN+ AI + + + ++++ A +EM + + P AG
Sbjct: 182 LGCELGGVLKNIVAIASGMADGLDVGDNTRAMVLARGLAEMTRLGEAMGANPRTFAGLTG 241
Query: 334 LADTYVTLL--KGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYEL 384
+ D T + RN G+ +A+G +T+D + G+ + +G+ EL
Sbjct: 242 VGDLIATCMSPSSRNRRVGEYIARG-MTVDEAVAKLGQ-VAEGVKTAPTVMEL 292
|
Rhodococcus sp. (strain RHA1) (taxid: 101510) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|P61738|GPDA_CORDI Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 84/372 (22%), Positives = 148/372 (39%), Gaps = 74/372 (19%)
Query: 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103
++I +GAG+WG+ + D+ + +W R RE+V
Sbjct: 1 MKIGVMGAGSWGTTLAKVFSDA------GCDVTLWAR-------------------REEV 35
Query: 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADI 163
R + T H + G L L T +A+ DAD+
Sbjct: 36 AREI----------------NTEHTNSTYLRGIALPHT------LTATTQPTQALCDADV 73
Query: 164 VINGLPSTETKEVFEEISRYWKERITV-PVIISLAKGVEAELEAVPRIITPTQMINRATG 222
V+ +PS + E W I +++SLAKG+E E + +++I TG
Sbjct: 74 VVLAVPSQTLRGNLAE----WCADIPQDALLLSLAKGIEKET-----FLRMSEVIAEVTG 124
Query: 223 VPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281
+ + L GPN+A EI ++ A I C EK + + L P+F + N D++ E
Sbjct: 125 AQPDKVAVLSGPNLAREIAEEQPAATVIACTNEKNAQRIQHALAAPYFRPYTNTDVIGCE 184
Query: 282 VMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHL---LAEEPEKLAG-PLLADT 337
+ G KNV A+ + + ++ T + I+ L + +P L+G L D
Sbjct: 185 IGGACKNVIALACGMASGRGLGENTLATLMTRGLAEISRLGVAMGADPRTLSGLAGLGDL 244
Query: 338 YVTLLK--GRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYEL---------LS 386
T RN +G L +G+ TLD + + +G+ + ++ L ++
Sbjct: 245 VATCSSPLSRNRTFGARLGEGK-TLDEARAATNGQVAEGVISSQSIARLADSLGVDMPIT 303
Query: 387 QSSLSVLHPEEN 398
++ V H ++N
Sbjct: 304 RAVFGVCHRDQN 315
|
Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) (taxid: 257309) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|B2V3Z2|GPDA_CLOBA Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 128/296 (43%), Gaps = 39/296 (13%)
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
+K NL++A DA+ ++ +PS + + +++ K+ +IIS+AKG+E +
Sbjct: 59 IKAFDNLEKATEDAEYIVLAIPSHTIRSICKQLKNKIKQE---TIIISIAKGIEEHTDKR 115
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR--KPLAKFLR 265
++ ++ N PI + L GP+ A E+ K + +E
Sbjct: 116 LSLVIKEELNN-----PI---VVLSGPSHAEEVVLK-LPTTLVVSSENMNAASEAQNLFM 166
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLL 322
F V+ N DLV EV G +KN+ A+ A + + +K+ E+ I L
Sbjct: 167 TSFFRVYTNEDLVGVEVGGAVKNIIALAAGILDGLGYGDNTKAALMTRGMKEISRIGSAL 226
Query: 323 AEEPEKLAGPL-LADTYVTLLK--GRNAWYGQELAKGRLTLDLGDSIKGKGM-IQGISAV 378
+ E G + D VT RN G + G +D+ +I+ GM ++G+ A
Sbjct: 227 GGKEETFYGLTGMGDLIVTCTSNHSRNRKAGLLIGSG---MDVNKAIEKIGMVVEGVKAC 283
Query: 379 KAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDE 434
KAFYEL + +S+ PI +LYK+L ++ P I E + E
Sbjct: 284 KAFYELKEKIGVSM---------------PITDILYKVLFEKKDPKSGIEELMLRE 324
|
Clostridium botulinum (strain Alaska E43 / Type E3) (taxid: 508767) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 461 | ||||||
| TAIR|locus:2062734 | 462 | GPDHC1 [Arabidopsis thaliana ( | 0.973 | 0.971 | 0.812 | 4.2e-198 | |
| TAIR|locus:2077387 | 466 | AT3G07690 [Arabidopsis thalian | 0.924 | 0.914 | 0.8 | 6e-190 | |
| TIGR_CMR|DET_1397 | 359 | DET_1397 "glycerol-3-phosphate | 0.507 | 0.651 | 0.271 | 9.7e-11 | |
| TIGR_CMR|BA_1526 | 340 | BA_1526 "glycerol-3-phosphate | 0.490 | 0.664 | 0.248 | 1.4e-10 | |
| UNIPROTKB|P95113 | 334 | gpsA "Glycerol-3-phosphate deh | 0.537 | 0.742 | 0.242 | 2.6e-10 | |
| UNIPROTKB|I3LLU0 | 351 | GPD1L "Uncharacterized protein | 0.492 | 0.646 | 0.264 | 8.3e-10 | |
| MGI|MGI:1289257 | 351 | Gpd1l "glycerol-3-phosphate de | 0.494 | 0.649 | 0.261 | 9.2e-10 | |
| UNIPROTKB|F1P0W8 | 380 | GPD1L "Uncharacterized protein | 0.492 | 0.597 | 0.264 | 1.2e-09 | |
| RGD|1560123 | 351 | Gpd1l "glycerol-3-phosphate de | 0.492 | 0.646 | 0.264 | 1.6e-09 | |
| UNIPROTKB|Q8N335 | 351 | GPD1L "Glycerol-3-phosphate de | 0.492 | 0.646 | 0.260 | 2e-09 |
| TAIR|locus:2062734 GPDHC1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1918 (680.2 bits), Expect = 4.2e-198, P = 4.2e-198
Identities = 368/453 (81%), Positives = 400/453 (88%)
Query: 11 SLSSNGLIHHTNGSXXXXXXXXXXXMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR 70
SL SNG +HH + +GK+E DPLRIV VGAGAWGSVF A+LQ+SYG R
Sbjct: 9 SLQSNGSVHHIGLNLEEKLDEFRRLLGKSEKDPLRIVSVGAGAWGSVFAALLQESYGGFR 68
Query: 71 DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADE 130
DK IRIWRR GR+VDR TAEHLFEVINSRED+LRRLIRRCAYLKYVEARLGDRTL+ADE
Sbjct: 69 DKFQIRIWRRAGRAVDRETAEHLFEVINSREDILRRLIRRCAYLKYVEARLGDRTLYADE 128
Query: 131 ILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV 190
ILKDGFCLNM+DTPLCPLKVVTNLQEAVWDADIV+NGLPSTET+EVFEEIS+YWKERITV
Sbjct: 129 ILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERITV 188
Query: 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI 250
P+IISL+KG+E LE VP IITPT+MI++ATGVPI+N+LYLGGPNIA+EIYNKEYANARI
Sbjct: 189 PIIISLSKGIETALEPVPHIITPTKMIHQATGVPIDNVLYLGGPNIAAEIYNKEYANARI 248
Query: 251 CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGA----ALTNESATSKSV 306
CGA KWRKPLAKFLR+PHF VWDN DLVTHEVMGGLKNVYAIGA ALTNESATSKSV
Sbjct: 249 CGAAKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 308
Query: 307 YFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSI 366
YFAHCTSEM+FITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQ LAKG + D+GDSI
Sbjct: 309 YFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGEINRDMGDSI 368
Query: 367 KGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQA 426
GKGMIQG+SAV AFY+LLSQSSLS+L EE KPVA VE CPILK LYKILI RE QA
Sbjct: 369 SGKGMIQGVSAVGAFYQLLSQSSLSILPSEEKKPVAPVESCPILKTLYKILITREQSTQA 428
Query: 427 ILEALRDETMNDPRDRIEIAQTHVFYRPSLLGQ 459
IL+ALRDET+NDPRDRIEIAQ+H FYRPSLLGQ
Sbjct: 429 ILQALRDETLNDPRDRIEIAQSHAFYRPSLLGQ 461
|
|
| TAIR|locus:2077387 AT3G07690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1841 (653.1 bits), Expect = 6.0e-190, P = 6.0e-190
Identities = 352/440 (80%), Positives = 391/440 (88%)
Query: 36 MGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFE 95
MGKA+ DPLRIVGVGAGAWGSVF AMLQ++YG R KV +RIWRR GR++D+ATAEHLFE
Sbjct: 27 MGKADDDPLRIVGVGAGAWGSVFIAMLQENYGKFRGKVSVRIWRRGGRAIDKATAEHLFE 86
Query: 96 VINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQ 155
VINSRE++LRRLIRRCAYLKYVEARLGDR L+ADEILKDGFCLNMI+TPLCPLKVVTNLQ
Sbjct: 87 VINSREELLRRLIRRCAYLKYVEARLGDRVLYADEILKDGFCLNMIETPLCPLKVVTNLQ 146
Query: 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQ 215
EAVWDADIVINGLPSTET +VF EIS+YWKER+ PVIISLAKGVEAE E PRI+TPTQ
Sbjct: 147 EAVWDADIVINGLPSTETFQVFNEISKYWKERVNAPVIISLAKGVEAEFEPHPRIVTPTQ 206
Query: 216 MINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275
MI+RATG+P+ENILYLGGPNIASE+YNKEYANARICG+EKWRKPL KFLR+ HF VWDN
Sbjct: 207 MIHRATGIPLENILYLGGPNIASEVYNKEYANARICGSEKWRKPLGKFLRQSHFIVWDNS 266
Query: 276 DLVTHEVMGGLKNVYAIGAA--------------LTNESATSKSVYFAHCTSEMVFITHL 321
DL+THEVMGGLKNVYAIGA LT ESATSKSVYFAHCTSEM+FITHL
Sbjct: 267 DLITHEVMGGLKNVYAIGAVFVLAFLYSTGMVATLTKESATSKSVYFAHCTSEMIFITHL 326
Query: 322 LAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAF 381
LA+EPEKLAGPLLADTYVTLLKGRNAWYGQ+LAKG L+L++GDSIKGKGMIQG+SAVKAF
Sbjct: 327 LAKEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELSLEMGDSIKGKGMIQGVSAVKAF 386
Query: 382 YELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDETMNDPRD 441
+ELL+QSSLS+ HPEE KPV ELCPILKMLY+ILI RE +AILEALRDETMNDPR+
Sbjct: 387 FELLNQSSLSLQHPEEGKPVTPAELCPILKMLYRILITREFSCEAILEALRDETMNDPRE 446
Query: 442 RIEIAQTHVFYRPSLLGQLP 461
IEIA +H+F++P LLGQ P
Sbjct: 447 LIEIAHSHLFFQPWLLGQKP 466
|
|
| TIGR_CMR|DET_1397 DET_1397 "glycerol-3-phosphate dehydrogenase, NAD-dependent" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 9.7e-11, P = 9.7e-11
Identities = 69/254 (27%), Positives = 113/254 (44%)
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
L V +L+EA+ AD+V+ +PS + + + + ++ S +KG+E +
Sbjct: 60 LNVTASLEEALSGADMVLMAVPSQRMRPNIRLAAPLLTKNM---LVCSASKGLE--IGTA 114
Query: 208 PRIITPTQMINRATGVPI-ENILYLGGPNIASEIYNKEYANARICGA--EKWRKPLAKFL 264
R+ +Q+I +NI L GPN+A EI K + A EK K AK +
Sbjct: 115 KRM---SQVIADEISPDFSQNICVLSGPNLAMEIL-KGLPAVTVLAADTEKTAKKAAKLV 170
Query: 265 RRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESA---TSKSVYFAHCTSEMVFITHL 321
+F + N D++ E+ G LKN+ A+GA + + + +KS +E+ +
Sbjct: 171 TASNFCAYTNTDIIGVELGGSLKNIIALGAGIADGLSFGNNAKSALITRGLTEISALGAA 230
Query: 322 LAEEPEKLAGPL-LADTYVTLLKG--RNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAV 378
L P +G L D T RN + G EL KGR D+ S+ + +G+S
Sbjct: 231 LGANPLTFSGLAGLGDLIATCSSNLSRNHFVGVELTKGRSLNDIMYSMSN--VAEGVSTT 288
Query: 379 KAFYELLSQSSLSV 392
YEL L +
Sbjct: 289 AVAYELARSMDLEM 302
|
|
| TIGR_CMR|BA_1526 BA_1526 "glycerol-3-phosphate dehydrogenase (NAD(P)+)" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 63/254 (24%), Positives = 119/254 (46%)
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVI-ISLAKGVEAELEAVPRI 210
++L+EA+ D ++V+ +P+ +EV +++ +Y + P I +KG+E RI
Sbjct: 63 SSLEEALVDVNVVLIVVPTKAYREVLQDMKKY----VAGPTTWIHASKGIEPGTSK--RI 116
Query: 211 ITPTQMINRATGVP---IENILYLGGPNIASEIYNKEYANARICGAEKWR--KPLAKFLR 265
+++I +P I++++ L GP+ A E+ ++ A A++ + +
Sbjct: 117 ---SEVIEEE--IPEDLIKDVVVLSGPSHAEEVGLRQ-ATTVTSAAKRMEAAEEVQDLFM 170
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHL---L 322
+F V+ N D+V E+ G LKN+ A+ A +T+ + A T + I L +
Sbjct: 171 NSYFRVYTNPDIVGVELGGALKNIIALAAGITDGLGLGDNAKAALMTRGLTEIARLGRKM 230
Query: 323 AEEPEKLAGPL-LADTYVTL--LKGRNAWYGQELAKGRLTLDLGDSIKGKGMI-QGISAV 378
P AG + D VT + RN G L KG L + ++ GM+ +G+
Sbjct: 231 GGNPLTFAGLTGMGDLIVTCTSVHSRNWRAGNMLGKGH---SLEEVLESMGMVVEGVRTT 287
Query: 379 KAFYELLSQSSLSV 392
KA +EL + + +
Sbjct: 288 KAAHELAEKMEVEM 301
|
|
| UNIPROTKB|P95113 gpsA "Glycerol-3-phosphate dehydrogenase [NAD(P)+]" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 160 (61.4 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 65/268 (24%), Positives = 119/268 (44%)
Query: 128 ADEILKDGFCLNMIDTPLCP--LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185
AD+I + + + L P + + +EA+ A V+ G+P+ + E +
Sbjct: 41 ADQINTTRYNPDYLPGALLPPSIHATADAEEALGGASTVLLGVPAQTMRANLERWAPLLP 100
Query: 186 ERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY 245
E T ++SLAKG+E L + R+ +Q+I TG + + GPN+ASEI +
Sbjct: 101 EGAT---LVSLAKGIE--LGTLMRM---SQVIISVTGAEPPQVAVISGPNLASEIAECQP 152
Query: 246 ANARICGAEKWRK-PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSK 304
A + ++ R L + L +F + N D+V E+ G KN+ A+ + +
Sbjct: 153 AATVVACSDSGRAVALQRALNSGYFRPYTNADVVGTEIGGACKNIIALACGMAVGIGLGE 212
Query: 305 SVYFAHCT---SEMVFITHLLAEEPEKLAGPL-LADTYVTLL--KGRNAWYGQELAKGRL 358
+ A T +E++ + L LAG + D T + RN +G+ L +G
Sbjct: 213 NTAAAIITRGLAEIIRLGTALGANGATLAGLAGVGDLVATCTSPRSRNRSFGERLGRGET 272
Query: 359 TLDLGDSIKGKGMIQGISAVKAFYELLS 386
G K +++G+++ ++ L S
Sbjct: 273 LQSAG---KACHVVEGVTSCESVLALAS 297
|
|
| UNIPROTKB|I3LLU0 GPD1L "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 154 (59.3 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 67/253 (26%), Positives = 112/253 (44%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
V NL EAV DAD+++ +P + +EI+ R K+ + I+L KG++ E +
Sbjct: 78 VANLGEAVKDADLLVFVIPHQFIHRICDEITGRVPKDALG----ITLIKGIDEGPEGLKL 133
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
I + +I G+ I ++ G NIA+E+ ++ I G++ L + L+ P
Sbjct: 134 I---SDIIREKMGIDISVLM---GANIANEVAAGKFCETTI-GSKVMENGLLFKELLQTP 186
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLL 322
+F TV D+ D V E+ G LKN+ A+GA + +K+ EM+ +
Sbjct: 187 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARIF 244
Query: 323 AEEPEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISA 377
+ A L +AD T GRN + A+ G+ +L + +QG
Sbjct: 245 CKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQGPQT 304
Query: 378 VKAFYELLSQSSL 390
Y +L Q L
Sbjct: 305 AAEVYRILKQKGL 317
|
|
| MGI|MGI:1289257 Gpd1l "glycerol-3-phosphate dehydrogenase 1-like" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 66/252 (26%), Positives = 114/252 (45%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
V NL EAV DAD+++ +P ++ +EI+ E+ + I+L KG++ + + I
Sbjct: 78 VPNLSEAVQDADLLVFVIPHQFIHKICDEITGRVPEKA---LGITLIKGIDEGPDGLKLI 134
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRPH 268
+ +I G+ I ++ G NIASE+ +++ I G++ + L + L+ P+
Sbjct: 135 ---SDIIREKMGIDISVLM---GANIASEVAAEKFCETTI-GSKVMQNGLLFKELLQTPN 187
Query: 269 F--TVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLA 323
F TV D+ D V E+ G LKN+ A+GA + +K+ EM+ +
Sbjct: 188 FRITVVDDADTV--ELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFAKIFC 245
Query: 324 EEPEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISAV 378
+ A L +AD T GRN + A+ G+ +L + +QG
Sbjct: 246 KGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKELLNGQKLQGPQTS 305
Query: 379 KAFYELLSQSSL 390
Y +L Q L
Sbjct: 306 AEVYRILRQKGL 317
|
|
| UNIPROTKB|F1P0W8 GPD1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 67/253 (26%), Positives = 113/253 (44%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
V NL EAV DAD+++ +P +V +EI+ R K+ + I+L KG++ E +
Sbjct: 107 VPNLNEAVQDADLLVFVVPHQFIHKVCDEITGRVPKKALG----ITLIKGIDEGPEGLKL 162
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
I + +I G+ I ++ G NIA+E+ +++ I G++ L + L+ P
Sbjct: 163 I---SDIIREKMGIDISVLM---GANIANEVAAEKFCETTI-GSKILENGLLFKELLQTP 215
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLL 322
+F TV D+ D V E+ G LKN+ A+GA + +K+ EM+ +
Sbjct: 216 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARIF 273
Query: 323 AEEPEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISA 377
+ A L +AD T GRN + K G+ +L + +QG
Sbjct: 274 CKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFVKTGKSIEELEQEMLNGQKLQGPQT 333
Query: 378 VKAFYELLSQSSL 390
Y +L Q +
Sbjct: 334 SAEVYRILKQKGM 346
|
|
| RGD|1560123 Gpd1l "glycerol-3-phosphate dehydrogenase 1-like" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 67/253 (26%), Positives = 115/253 (45%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
V NL EAV DAD+++ +P ++ +EI+ R K+ + I+L KG++ + +
Sbjct: 78 VPNLGEAVQDADLLVFVIPHQFIHKICDEITGRVPKKAVG----ITLIKGIDEGPDGLKL 133
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
I + +I G+ I ++ G NIASE+ +++ I G++ + L + L+ P
Sbjct: 134 I---SDIIREKMGIDISVLM---GANIASEVAAEKFCETTI-GSKVLQNGLLFKELLQTP 186
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAALTNESA---TSKSVYFAHCTSEMVFITHLL 322
+F TV D+ D V E+ G LKN+ A+GA + +K+ EM+ +
Sbjct: 187 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLCCGDNTKAAVIRLGLMEMIAFAKIF 244
Query: 323 AEEPEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISA 377
+ A L +AD T GRN + A+ G+ +L + +QG
Sbjct: 245 CKGQVSTATFLESCGVADLITTCYGGRNRKVAEAFARTGKTIEELEKELLNGQKLQGPQT 304
Query: 378 VKAFYELLSQSSL 390
Y +L Q L
Sbjct: 305 SAEVYRILKQKGL 317
|
|
| UNIPROTKB|Q8N335 GPD1L "Glycerol-3-phosphate dehydrogenase 1-like protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 66/253 (26%), Positives = 114/253 (45%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
++NL EAV DAD+++ +P + +EI+ R K+ + I+L KG++ E +
Sbjct: 78 MSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALG----ITLIKGIDEGPEGLKL 133
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
I + +I G+ I ++ G NIA+E+ +++ I G++ L + L+ P
Sbjct: 134 I---SDIIREKMGIDISVLM---GANIANEVAAEKFCETTI-GSKVMENGLLFKELLQTP 186
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLL 322
+F TV D+ D V E+ G LKN+ A+GA + +K+ EM+ +
Sbjct: 187 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARIF 244
Query: 323 AEEPEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISA 377
+ A L +AD T GRN + A+ G+ +L + +QG
Sbjct: 245 CKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQGPQT 304
Query: 378 VKAFYELLSQSSL 390
Y +L Q L
Sbjct: 305 SAEVYRILKQKGL 317
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O22216 | GPDHC_ARATH | 1, ., 1, ., 1, ., 8 | 0.8322 | 0.9739 | 0.9718 | yes | no |
| Q65X70 | GPDH3_ORYSJ | 1, ., 1, ., 1, ., 8 | 0.8229 | 0.9349 | 0.9268 | no | no |
| Q8S0G4 | GPDH1_ORYSJ | 1, ., 1, ., 1, ., 8 | 0.8300 | 0.9718 | 0.9824 | yes | no |
| Q8S2G5 | GPDH2_ORYSJ | 1, ., 1, ., 1, ., 8 | 0.8314 | 0.9544 | 0.9421 | no | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 461 | |||
| pfam07479 | 145 | pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol- | 2e-30 | |
| COG0240 | 329 | COG0240, GpsA, Glycerol-3-phosphate dehydrogenase | 9e-24 | |
| PRK00094 | 325 | PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosp | 5e-17 | |
| PRK12439 | 341 | PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-p | 1e-13 | |
| PTZ00345 | 365 | PTZ00345, PTZ00345, glycerol-3-phosphate dehydroge | 2e-13 | |
| TIGR03376 | 342 | TIGR03376, glycerol3P_DH, glycerol-3-phosphate deh | 1e-12 | |
| pfam01210 | 157 | pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol- | 1e-08 | |
| PRK14619 | 308 | PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-p | 5e-07 | |
| PRK14618 | 328 | PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-p | 5e-06 | |
| PRK14620 | 326 | PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-p | 6e-04 |
| >gnl|CDD|116100 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-30
Identities = 47/164 (28%), Positives = 62/164 (37%), Gaps = 31/164 (18%)
Query: 276 DLVTHEVMGGLKNVYAIGA----ALTNESATSKSVYFAHCTSEMVFITHLLAEEPE---K 328
D+V E+ G LKNV AI A L +K+ EM+ L PE
Sbjct: 2 DVVGVEIGGALKNVIAIAAGILDGLGFG-DNTKAALITRGLMEMIKFGAALGGGPETFFG 60
Query: 329 LAGPLLADTYVTLL--KGRNAWYGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELL 385
LAG L D T GRN G+ L KG+ L + K G +G+ K YEL
Sbjct: 61 LAG--LGDLITTCTSELGRNRRVGEALGKGK---SLEEIEKELGQVAEGVKTAKEVYELA 115
Query: 386 SQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE 429
+ L P+ +Y+IL P +AI
Sbjct: 116 KRKGLD---------------FPLFTAVYRILYEGLKPEEAIEY 144
|
NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the C-terminal substrate-binding domain. Length = 145 |
| >gnl|CDD|223318 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 9e-24
Identities = 94/407 (23%), Positives = 162/407 (39%), Gaps = 101/407 (24%)
Query: 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSRE 101
++I +GAG+WG+ +L + G+ +V R+W R E + E+ +RE
Sbjct: 1 MMKIAVIGAGSWGTALAKVLARN-GH---EV--RLWGRDE---------EIVAEINETRE 45
Query: 102 DVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA 161
+ YL + L LK T+L EA+ A
Sbjct: 46 NP--------KYLPGIL-------------LPPN------------LKATTDLAEALDGA 72
Query: 162 DIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRAT 221
DI++ +PS +EV ++ + +I+S KG+E E +++I
Sbjct: 73 DIIVIAVPSQALREVLRQLKPLLLKD---AIIVSATKGLEPE-----TGRLLSEIIEEEL 124
Query: 222 GVPIENILYLGGPNIASEIYNKEYANARICGA------EKWRKPLAKFLRRPHFTVWDNG 275
P I L GP+ A E+ A ++ + + P+F V+ +
Sbjct: 125 --PDNPIAVLSGPSFAKEV-----AQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTST 177
Query: 276 DLVTHEVMGGLKNVYAIGAALTN---ESATSKSVYFAHCTSEMV-FITHLLAEEPEK--- 328
D++ E+ G LKNV AI A + + +K+ +EM L A +PE
Sbjct: 178 DVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGA-KPETFMG 236
Query: 329 LAGPLLADTYVTL--LKGRNAWYGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELL 385
L+G L D +T RN +G L +G L L ++++ G ++G+ KA YEL
Sbjct: 237 LSG--LGDLILTCTSPLSRNRRFGLLLGQG---LSLDEALEEIGQVVEGVRTAKAVYELA 291
Query: 386 SQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALR 432
+ + + PI + +Y++L P +AI E +
Sbjct: 292 KKLGIEM---------------PITEAVYRVLYEGLDPKEAIEELMG 323
|
Length = 329 |
| >gnl|CDD|234629 PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 5e-17
Identities = 93/423 (21%), Positives = 150/423 (35%), Gaps = 150/423 (35%)
Query: 49 VGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108
+GAG+WG+ +L + G+ V +W R E E+ RE+
Sbjct: 7 LGAGSWGTALAIVLARN-GH---DV--TLWAR--------DPEQAAEINADRENP----- 47
Query: 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL 168
YL L D L+ T+L EA+ DAD+++ +
Sbjct: 48 ---RYLP-------------GIKLPDN------------LRATTDLAEALADADLILVAV 79
Query: 169 PSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228
PS +EV +++ I+ KG+E ++++ I
Sbjct: 80 PSQALREVLKQLKPLLPPD---APIVWATKGIEPGTGK-----LLSEVLEEELPDL-API 130
Query: 229 LYLGGPNIASEI------------YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276
L GP+ A E+ ++E A + + P+F V+ N D
Sbjct: 131 AVLSGPSFAKEVARGLPTAVVIASTDEELAER-----------VQELFHSPYFRVYTNTD 179
Query: 277 LVTHEVMGGLKNVYAIG--------------AALTNESATSKSVYFAHCTSEMVFITHLL 322
++ E+ G LKNV AI AAL IT L
Sbjct: 180 VIGVELGGALKNVIAIAAGIADGLGLGDNARAAL---------------------ITRGL 218
Query: 323 AE----------EPEKLAGPLLA---DTYVTL--LKGRNAWYGQELAKGRLTLDLGDSIK 367
AE PE G LA D +T RN +G L +G+ +L+ +++
Sbjct: 219 AEITRLGVALGANPETFLG--LAGLGDLVLTCTSPLSRNRRFGLALGQGK-SLE--EALA 273
Query: 368 GKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQA 426
GM +G+ KA YEL + L VE+ PI + +Y +L + P +A
Sbjct: 274 EIGMVAEGVRTAKAVYELAKK-----LG---------VEM-PITEAVYAVLYEGKDPREA 318
Query: 427 ILE 429
+ +
Sbjct: 319 VED 321
|
Length = 325 |
| >gnl|CDD|171500 PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-13
Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 20/225 (8%)
Query: 142 DTPLCP-LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200
D L L+ T+ EA AD+V+ G+PS + V E+++ R VPV+ SL KG+
Sbjct: 58 DVVLSDTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKEL--RPWVPVV-SLVKGL 114
Query: 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR--K 258
E + +Q+I +P L GPNIA E+ YA A +
Sbjct: 115 EQGTN-----MRMSQIIEEV--LPGHPAGILAGPNIAREVAEG-YAAAAVLAMPDQHLAT 166
Query: 259 PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEM 315
L+ R F V+ D+V E+ G LKNV+AI + ++++ A EM
Sbjct: 167 RLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREM 226
Query: 316 VFITHLLAEEPEKLAGPL-LADTYVTLL--KGRNAWYGQELAKGR 357
+ + PE AG + D VT + RN G++L G+
Sbjct: 227 TKLGVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLGAGK 271
|
Length = 341 |
| >gnl|CDD|240373 PTZ00345, PTZ00345, glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 98/418 (23%), Positives = 169/418 (40%), Gaps = 92/418 (22%)
Query: 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV---LIRIWRRPGRSVDRATAEHLFEVINS 99
PL++ +G+G WGS + ++ R+ + +R+W + E L ++IN+
Sbjct: 11 PLKVSVIGSGNWGSAISKVV--GENTQRNYIFHNEVRMWVLE----EIVEGEKLSDIINT 64
Query: 100 R-EDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV 158
+ E+V YL ++ D I+ V++L+EAV
Sbjct: 65 KHENV--------KYLPGIKL--------PDNIV-----------------AVSDLKEAV 91
Query: 159 WDADIVINGLPSTETKEVFEEISRYWKERITVP---VIISLAKGVEAELEAVPRIITPTQ 215
DAD++I +P + V +I KE + ISL KG+ E P + +
Sbjct: 92 EDADLLIFVIPHQFLESVLSQI----KENNNLKKHARAISLTKGIIVE-NGKPVLCSDV- 145
Query: 216 MINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEK-----WRKPLAKFLRRPHFT 270
I G+P L G N+A+++ +E++ A I +K W+ + RP+F
Sbjct: 146 -IEEELGIP---CCALSGANVANDVAREEFSEATIGCEDKDDALIWQ----RLFDRPYFK 197
Query: 271 VWDNGDLVTHEVMGGLKNVYAIGAAL---TNESATSKSVYFAHCTSEM-----VFITHLL 322
+ D++ EV G LKN+ A+ A +KS EM +F +++
Sbjct: 198 INCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVM 257
Query: 323 AEEPEKLAGPLLADTYVTLLKGRNAWYGQELAK--GRLTLDLGDSIKGKGM-IQGISAVK 379
E + G LAD T L GRN E AK G+ + + ++ G +QG +K
Sbjct: 258 DETFFESCG--LADLITTCLGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLK 315
Query: 380 AFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDETMN 437
YE+L H + P+ + YKI P ++++ L +
Sbjct: 316 EVYEVLES------HDLKK-------EFPLFTVTYKIAFEGADP-SSLIDVLSTNELR 359
|
Length = 365 |
| >gnl|CDD|234190 TIGR03376, glycerol3P_DH, glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 67/294 (22%), Positives = 116/294 (39%), Gaps = 40/294 (13%)
Query: 146 CPLKVVTN--LQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203
P +V L EA ADI++ +P + + +++ + K IS KG+E
Sbjct: 66 LPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNA---RAISCIKGLEVS 122
Query: 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-----CGAEKWRK 258
+ V + +I G+P L G N+A+E+ ++++ + + +
Sbjct: 123 KDGV---KLLSDIIEEELGIPCG---VLSGANLANEVAKEKFSETTVGYRDPADFDVDAR 176
Query: 259 PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESAT---SKSVYFAHCTSEM 315
L RP+F V D+ E+ G LKNV AI A + +K+ EM
Sbjct: 177 VLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEM 236
Query: 316 VFITHLLAEEPE-----KLAGPLLADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGK 369
+ + E + G +AD T L GRN G+ AK G+ +L +
Sbjct: 237 IKFARMFFPTGEVTFTFESCG--VADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNG 294
Query: 370 GMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESP 423
+QG++ K +ELL + + P+ + +Y+IL P
Sbjct: 295 QSLQGVATAKEVHELLKNKNK-------------DDEFPLFEAVYQILYEGLPP 335
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. Length = 342 |
| >gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 146 CPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE 205
L+ T+L+EA+ ADI++ +PS +EV +++ +++SL KG+E
Sbjct: 55 DNLRATTDLEEAIKGADIIVLAVPSQALREVLKQLKGLLSPG---AILVSLTKGIEPGTL 111
Query: 206 AVPRIITPTQMINRATGVPIENILYLGGPNIASEI 240
+ I ++ PI I L GP+ A E+
Sbjct: 112 KLLSEIIEEEL-------PINPIAVLSGPSHAEEV 139
|
NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain. Length = 157 |
| >gnl|CDD|237771 PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 5e-07
Identities = 69/296 (23%), Positives = 124/296 (41%), Gaps = 52/296 (17%)
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVP---VIISLAKGVEAELEAVP 208
+L + DAD++++ + + V E++ + + +P +I++ KG++ E
Sbjct: 39 LSLAAVLADADVIVSAVSMKGVRPVAEQV-----QALNLPPETIIVTATKGLDPE----- 88
Query: 209 RIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR-KPLAKFLRRP 267
TP+Q+ A P ++ L GPN++ EI A + + + + +
Sbjct: 89 TTRTPSQIWQAA--FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSE 146
Query: 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAAL-------TNESATSKSVYFAHCTSEMVFITH 320
F V+ N D + E+ G LKNV AI A + TN +K+ EM+ +
Sbjct: 147 RFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTN----AKAALVTRALPEMIRVGT 202
Query: 321 LLAEEPEKL-----AGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGI 375
L + E G LLA L RN G LA+G+ + ++G +G+
Sbjct: 203 HLGAQTETFYGLSGLGDLLATCTSPL--SRNYQVGYGLAQGKSLEQILAELEGTA--EGV 258
Query: 376 SAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEAL 431
+ +L Q +++V PI + +Y++L +P QA LE L
Sbjct: 259 NTANVLVQLAQQQNIAV---------------PITEQVYRLLQGEITPQQA-LEEL 298
|
Length = 308 |
| >gnl|CDD|237770 PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 59/242 (24%), Positives = 94/242 (38%), Gaps = 27/242 (11%)
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
L + +EA+ AD + +PS +E + R +S AKG+ +
Sbjct: 62 LYPTADPEEALAGADFAVVAVPSKALRETLAGLPR-------ALGYVSCAKGLAPDGG-- 112
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEK-WRKPLAKFLRR 266
R+ +++ T + L GPN A EI A + E + +
Sbjct: 113 -RLSELARVLEFLTQARV---AVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSG 168
Query: 267 PHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMV-FITHLL 322
P F V+ + D V E+ G LKNV A+ A + + +K+ EMV F L
Sbjct: 169 PSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALG 228
Query: 323 AEEPEKLA----GPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAV 378
AEE G L+A RN G+ + +G +D G +++G+ V
Sbjct: 229 AEEATFYGLSGLGDLIATATS--PHSRNRAAGEAIVRG---VDREHLEAGGKVVEGLYTV 283
Query: 379 KA 380
KA
Sbjct: 284 KA 285
|
Length = 328 |
| >gnl|CDD|173083 PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 59/259 (22%), Positives = 106/259 (40%), Gaps = 33/259 (12%)
Query: 144 PLCPLK----VVTNLQEAVWD-ADIVINGLPSTETKEVFEEI-SRYWKERITVPVIISLA 197
P C L V + + E + D A +I +P+ + + + +++ + K+ P++I +
Sbjct: 50 PTCHLPDNISVKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKKN--TPILIC-S 106
Query: 198 KGVEAELEAVPRIIT---PTQMINRATGVPIENILYLGGPNIASEIYNK-EYANARICGA 253
KG+E + P++++N +P I L GP+ A EI K +
Sbjct: 107 KGIE--------KSSLKFPSEIVNEI--LPNNPIAILSGPSFAKEIAEKLPCSIVLAGQN 156
Query: 254 EKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTS 313
E L L + + + D++ ++ LKN+ AI + + + A T
Sbjct: 157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITK 216
Query: 314 EMVFITHLLAEEPEK-----LAGP-LLADTYVTL--LKGRNAWYGQELAKGRLTLDLGDS 365
M I L + + L GP L D +T L RN +G ++ G +
Sbjct: 217 GMNEIKTLYSAKNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILS- 275
Query: 366 IKGKGMIQGISAVKAFYEL 384
+GK +I+G S VK L
Sbjct: 276 -EGKSVIEGFSTVKPLISL 293
|
Length = 326 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 461 | |||
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 100.0 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 100.0 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 100.0 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 100.0 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 100.0 | |
| PF07479 | 149 | NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate | 100.0 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.94 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.92 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.9 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.9 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.9 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.87 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.87 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.84 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.79 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.79 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.76 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.73 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.7 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.7 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.69 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.65 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.65 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.64 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.64 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.61 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.59 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.57 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.55 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.54 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.52 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.52 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.52 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.51 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.51 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.5 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.49 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.48 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.47 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.45 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.44 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.43 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.43 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.4 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.38 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.38 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.36 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.36 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.35 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.35 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.35 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.34 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.34 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.34 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.33 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.33 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.32 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.31 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.24 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 99.24 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.23 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.2 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.19 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.18 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.17 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.15 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.14 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.13 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.13 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.09 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.09 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.08 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.06 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.02 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.01 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.99 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 98.97 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.95 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 98.94 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.91 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.9 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.88 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.83 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.82 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 98.79 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 98.72 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 98.71 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 98.7 | |
| PLN02712 | 667 | arogenate dehydrogenase | 98.66 | |
| PLN02712 | 667 | arogenate dehydrogenase | 98.63 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 98.6 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.53 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.5 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 98.49 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.43 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.42 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.38 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.32 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.32 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.26 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.26 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 98.23 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.21 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.21 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.2 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 98.19 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.98 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.97 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.91 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.9 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.87 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.86 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.82 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 97.82 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 97.81 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.79 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.75 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.74 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 97.72 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 97.72 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 97.71 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.7 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.7 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 97.69 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.68 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 97.67 | |
| PF08546 | 125 | ApbA_C: Ketopantoate reductase PanE/ApbA C termina | 97.65 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 97.63 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.61 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.6 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.59 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.57 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 97.57 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.55 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 97.55 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 97.55 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.54 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.52 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.5 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.45 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.44 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.44 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.41 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.4 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 97.4 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 97.38 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.37 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.32 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.31 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.31 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.31 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.29 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.26 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.24 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.23 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.22 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.21 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.2 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.19 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.17 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.16 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.16 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 97.16 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.16 | |
| PLN00106 | 323 | malate dehydrogenase | 97.16 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.14 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.13 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 97.1 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.09 | |
| PLN02928 | 347 | oxidoreductase family protein | 97.09 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.09 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.05 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.04 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.04 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.04 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.01 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.0 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.0 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.99 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.98 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.97 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.94 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.92 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.91 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.91 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 96.88 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.86 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.86 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 96.83 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 96.8 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 96.8 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 96.77 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 96.75 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.74 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 96.73 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.72 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 96.71 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 96.69 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 96.67 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.67 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.66 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.64 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.63 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.63 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 96.63 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.62 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 96.62 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.62 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.59 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 96.56 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.55 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.54 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.53 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.52 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.51 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 96.51 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.49 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.48 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.46 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 96.45 | |
| PLN02494 | 477 | adenosylhomocysteinase | 96.43 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.39 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.37 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.3 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 96.29 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.28 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.26 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.24 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 96.22 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 96.19 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.17 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 96.16 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.15 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 96.07 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.07 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.04 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.0 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 95.99 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 95.96 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 95.95 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 95.91 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.88 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.87 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 95.84 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 95.79 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.78 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 95.77 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.7 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 95.62 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.53 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.5 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 95.48 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.47 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 95.41 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.36 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.33 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 95.24 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.24 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 95.23 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.2 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.2 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.16 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 95.14 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.03 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.0 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 94.96 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.93 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 94.92 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 94.91 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 94.9 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 94.89 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 94.84 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 94.72 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 94.71 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 94.68 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 94.58 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 94.57 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.56 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 94.51 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 94.5 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 94.39 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.38 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.33 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 94.32 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 94.3 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 94.16 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 94.07 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 94.07 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 94.04 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 94.01 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.97 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 93.86 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 93.7 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 93.68 | |
| PRK08223 | 287 | hypothetical protein; Validated | 93.67 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 93.65 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 93.64 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 93.64 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 93.57 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 93.54 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 93.54 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 93.52 | |
| PRK07411 | 390 | hypothetical protein; Validated | 93.49 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 93.48 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 93.47 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 93.31 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 93.28 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 93.27 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 93.23 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 93.17 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 93.1 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 93.0 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.95 | |
| PRK05868 | 372 | hypothetical protein; Validated | 92.94 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 92.93 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 92.86 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 92.81 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 92.77 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 92.7 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 92.7 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 92.61 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 92.57 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 92.55 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 92.53 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 92.51 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 92.43 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 92.31 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 92.28 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 92.24 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 92.18 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 92.14 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 91.99 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 91.95 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 91.85 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.67 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.62 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 91.59 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 91.57 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 91.38 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 91.26 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.22 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 91.19 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 91.18 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 91.05 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 90.98 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 90.97 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 90.84 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 90.82 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 90.82 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 90.77 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 90.76 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 90.71 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 90.62 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 90.61 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 90.54 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 90.54 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 90.5 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 90.42 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 90.39 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 90.37 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 90.35 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 90.35 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 90.34 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 90.14 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 90.13 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 90.11 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 90.03 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 90.0 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 89.99 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 89.97 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 89.75 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 89.75 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 89.73 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 89.67 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 89.64 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 89.56 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 89.55 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 89.54 | |
| PF08484 | 160 | Methyltransf_14: C-methyltransferase C-terminal do | 89.52 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 89.48 | |
| PLN02985 | 514 | squalene monooxygenase | 89.42 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 89.38 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 89.32 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 89.29 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 89.29 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 89.24 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 89.16 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 89.15 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 89.12 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 88.97 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 88.89 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 88.89 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 88.81 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 88.79 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 88.73 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 88.72 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 88.62 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 88.61 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 88.54 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 88.52 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 88.48 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.47 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 88.39 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 88.36 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 88.31 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 88.29 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.16 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 88.07 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 88.07 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 88.02 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 87.94 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 87.87 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 87.68 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 87.65 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 87.63 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 87.51 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 87.45 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 87.37 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 87.36 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 87.31 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 87.29 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 87.27 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 87.2 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 87.15 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 87.01 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 87.0 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 86.99 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 86.93 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 86.91 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 86.8 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 86.8 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 86.78 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 86.67 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 86.65 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 86.59 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 86.49 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 86.46 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 86.45 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 86.45 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 86.4 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 86.35 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 86.29 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 86.11 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 86.1 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 86.01 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 85.97 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 85.94 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 85.91 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 85.9 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 85.87 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 85.79 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 85.78 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 85.75 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 85.71 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 85.68 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 85.66 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 85.66 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 85.58 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 85.55 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 85.55 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 85.47 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 85.44 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 85.4 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 85.39 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 85.37 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 85.32 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 85.28 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.25 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 85.23 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.15 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 85.12 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 85.09 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 85.06 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 84.96 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 84.96 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 84.94 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 84.89 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 84.85 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 84.85 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 84.84 | |
| PLN02487 | 569 | zeta-carotene desaturase | 84.82 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 84.77 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 84.74 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 84.67 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 84.61 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 84.51 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 84.31 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 84.27 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.19 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 83.97 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 83.94 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 83.9 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 83.83 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 83.82 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.75 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 83.74 |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-70 Score=544.14 Aligned_cols=322 Identities=26% Similarity=0.414 Sum_probs=294.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+++ | |+|++|.|+++.+++++ ..+ +|++|+|++.
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n-g-----~~V~lw~r~~~~~~~i~---------~~~-------~N~~yLp~i~---- 54 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN-G-----HEVRLWGRDEEIVAEIN---------ETR-------ENPKYLPGIL---- 54 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc-C-----CeeEEEecCHHHHHHHH---------hcC-------cCccccCCcc----
Confidence 47999999999999999999999 8 99999999998877643 222 5889998762
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
+| .++.+++|+++++++||+|+++||+++++++++++.+++.+ ++++|+++||+++
T Consensus 55 ---lp------------------~~l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~---~~~iv~~sKGie~ 110 (329)
T COG0240 55 ---LP------------------PNLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLK---DAIIVSATKGLEP 110 (329)
T ss_pred ---CC------------------cccccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccC---CCeEEEEeccccC
Confidence 32 26889999999999999999999999999999999988876 7899999999999
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHHH
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (461)
+ +..++|+++++.++. .++++++|||||.|++++.|+.+++ +.+.+.++.++++|++++|++|.++|++|+|
T Consensus 111 ~-----t~~l~seii~e~l~~--~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~Gve 183 (329)
T COG0240 111 E-----TGRLLSEIIEEELPD--NPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVE 183 (329)
T ss_pred C-----CcchHHHHHHHHcCC--CeEEEEECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhH
Confidence 8 689999999999974 3589999999999999999998876 5678889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc--ccchhHHHHHHhc
Q 012547 282 VMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELAK 355 (461)
Q Consensus 282 ~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~~ 355 (461)
++|++||||||++|+++| ++|+++++++++++||.+|+.++|++++||+++ |+|||++||+ +||||+||..|++
T Consensus 184 igGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsGlGDLilTCts~~SRN~r~G~~lg~ 263 (329)
T COG0240 184 IGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLSGLGDLILTCTSPLSRNRRFGLLLGQ 263 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhcccccccceeEecCCCccccHHHHHHHhC
Confidence 999999999999999997 799999999999999999999999999999998 9999999996 6999999999999
Q ss_pred CCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhccc
Q 012547 356 GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDET 435 (461)
Q Consensus 356 g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l~~~~ 435 (461)
|++.++++..+ ++++||+.|++.++++++++|+ + +||+++||+||+++++|.+++..+|.|+.
T Consensus 264 g~~~~e~l~~~--g~vvEGv~t~k~v~~la~~~~i--------------~-mPI~~~Vy~vl~~~~~~~~~~~~L~~r~~ 326 (329)
T COG0240 264 GLSLDEALEEI--GQVVEGVRTAKAVYELAKKLGI--------------E-MPITEAVYRVLYEGLDPKEAIEELMGRDL 326 (329)
T ss_pred CCCHHHHHHhc--CCeeecHHHHHHHHHHHHHcCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHhcccc
Confidence 99887665433 5689999999999999999995 7 89999999999999999999999999999
Q ss_pred CCC
Q 012547 436 MND 438 (461)
Q Consensus 436 ~~~ 438 (461)
|.|
T Consensus 327 k~E 329 (329)
T COG0240 327 KPE 329 (329)
T ss_pred CCC
Confidence 876
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=526.63 Aligned_cols=346 Identities=26% Similarity=0.388 Sum_probs=297.0
Q ss_pred HHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCC--CCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhc
Q 012547 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRR 110 (461)
Q Consensus 33 ~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~--~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n 110 (461)
|.++-+..-++|||+|||+|+||+|+|..|+++ |... -+|+|.+|.|+++. +.+++.+.|++.+ +|
T Consensus 1 ~~~~~~~~~~~~ki~ViGaG~wGtAlA~~l~~n-~~~~~~~~~~V~lw~~~~~~----~~~~~~~~in~~~-------~N 68 (365)
T PTZ00345 1 RSLFQKLRCGPLKVSVIGSGNWGSAISKVVGEN-TQRNYIFHNEVRMWVLEEIV----EGEKLSDIINTKH-------EN 68 (365)
T ss_pred CcchhhcccCCCeEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEecccc----cchHHHHHHHhcC-------CC
Confidence 446667777889999999999999999999998 5100 01699999999862 1112333455544 58
Q ss_pred ccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHH--HhhccC
Q 012547 111 CAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR--YWKERI 188 (461)
Q Consensus 111 ~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~--~l~~~~ 188 (461)
++|+|+++ || .++.+++|+++++++||+||++||+++++++++++.+ ++.+
T Consensus 69 ~~ylp~~~-------Lp------------------~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~-- 121 (365)
T PTZ00345 69 VKYLPGIK-------LP------------------DNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKK-- 121 (365)
T ss_pred cccCCCCc-------CC------------------CceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCC--
Confidence 89998763 32 2688999999999999999999999999999999998 7765
Q ss_pred CCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCC
Q 012547 189 TVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRP 267 (461)
Q Consensus 189 ~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~ 267 (461)
++++||++||++.++. +..++|+++++.++. ++++++|||||.|++++.|+.+++ +.+.+.++.++++|+++
T Consensus 122 -~~~iIS~aKGIe~~t~---~~~~~sevi~e~l~~---~~~~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~~~ 194 (365)
T PTZ00345 122 -HARAISLTKGIIVENG---KPVLCSDVIEEELGI---PCCALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRP 194 (365)
T ss_pred -CCEEEEEeCCcccCCC---CcccHHHHHHHHhCC---CeEEEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCC
Confidence 5689999999998731 237899999999863 578999999999999999998876 56788899999999999
Q ss_pred CceEEecCChHHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCC--CchhhccC-hhhhhhhhc
Q 012547 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAE--EPEKLAGP-LLADTYVTL 341 (461)
Q Consensus 268 g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~--~~~t~~g~-glgDl~~T~ 341 (461)
+|++|.++|++|+|+||++||+|||++|+++| ++|+++++++++++||.+|++++|+ +++||+|+ |+|||++||
T Consensus 195 ~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~GDLi~Tc 274 (365)
T PTZ00345 195 YFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLITTC 274 (365)
T ss_pred cEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchHhHhhhcc
Confidence 99999999999999999999999999999997 6999999999999999999999975 89999997 999999999
Q ss_pred cccchhHHHHHHhcC---CChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 342 LKGRNAWYGQELAKG---RLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 342 ~~sRN~~~G~~l~~g---~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
+.||||+||++|++| ++.+++++.+.+++++||+.|++.+|++++++++. .+ +||+++||+||+
T Consensus 275 ~sSRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~------------~~-~Pi~~~vy~il~ 341 (365)
T PTZ00345 275 LGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLK------------KE-FPLFTVTYKIAF 341 (365)
T ss_pred cCCCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCC------------CC-CCHHHHHHHHHh
Confidence 889999999999986 47777776654567899999999999999999952 15 899999999999
Q ss_pred cCCCHHHHHHHHHhcccCC
Q 012547 419 MRESPIQAILEALRDETMN 437 (461)
Q Consensus 419 ~~~~~~~~~~~~l~~~~~~ 437 (461)
++.+|.+++..+|.++.+.
T Consensus 342 ~~~~~~~~~~~l~~r~~~~ 360 (365)
T PTZ00345 342 EGADPSSLIDVLSTNELRP 360 (365)
T ss_pred CCCCHHHHHHHHHcCCCcc
Confidence 9999999999999877764
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=501.49 Aligned_cols=326 Identities=24% Similarity=0.344 Sum_probs=282.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCC---eeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDK---VLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~---~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
||+|||+|+||+++|..|+++ |...+. |+|++|.|+++.- .+.+.+.+++.+ +|++|+|+++
T Consensus 1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~~~~~~----~~~~~~~in~~~-------~n~~ylpgi~--- 65 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVFEEEIE----GRNLTEIINTTH-------ENVKYLPGIK--- 65 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEeccccC----CHHHHHHHHhcC-------CCccccCCCc---
Confidence 699999999999999999998 521111 7999999954210 112334455544 5888888652
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+| .++++++|+++++++||+||++||+++++++++++.+++++ ++++|+++||++
T Consensus 66 ----Lp------------------~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~---~~~iVs~tKGie 120 (342)
T TIGR03376 66 ----LP------------------ANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKP---NARAISCIKGLE 120 (342)
T ss_pred ----CC------------------CCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCC---CCEEEEEeCCcc
Confidence 22 26889999999999999999999999999999999999876 689999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCC----hhHHHHHHHHhcCCCceEEecCC
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGA----EKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~----~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
.+. ++.+++|+++++.++ .++++++|||||.|++++.|+.+++ +.+ .+.++.++++|++++|++|.++|
T Consensus 121 ~~~---~~~~~~se~i~e~l~---~~~~~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~D 194 (342)
T TIGR03376 121 VSK---DGVKLLSDIIEEELG---IPCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDD 194 (342)
T ss_pred cCC---CcCccHHHHHHHHhC---CCeEEeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCC
Confidence 762 257899999999985 3578999999999999999998876 556 68899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCch--hhccC-hhhhhhhhccccchhHHH
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPE--KLAGP-LLADTYVTLLKGRNAWYG 350 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~--t~~g~-glgDl~~T~~~sRN~~~G 350 (461)
++|+|+||++||+|||++||++| ++|+++++++++++||.+|++++|++++ ||+|+ |+|||++||+.||||+||
T Consensus 195 v~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G 274 (342)
T TIGR03376 195 VAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVG 274 (342)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhhhhheeecCccHHHH
Confidence 99999999999999999999997 6999999999999999999999999887 99997 999999999889999999
Q ss_pred HHHhc-CCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHH
Q 012547 351 QELAK-GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE 429 (461)
Q Consensus 351 ~~l~~-g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~ 429 (461)
++|++ |++.+++.+.+..++++||+.|++.+++++++++++ +++||++++|+||+++++|.+++..
T Consensus 275 ~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i~-------------~~~Pi~~~vy~il~~~~~~~~~~~~ 341 (342)
T TIGR03376 275 RAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKD-------------DEFPLFEAVYQILYEGLPPKKLPEC 341 (342)
T ss_pred HHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCCC-------------cCCCHHHHHHHHHhCCCCHHHHHhh
Confidence 99999 999988876644567899999999999999999973 3389999999999999999988754
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=464.23 Aligned_cols=360 Identities=34% Similarity=0.448 Sum_probs=314.2
Q ss_pred hHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCC-CCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhh
Q 012547 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYL-RDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (461)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~-~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (461)
.++++++.++.++..+.++.||+|||+|+||+++|+.++.+.+.+ .-..+|.+|.+.++.-.. .++|.++||++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~--~~~L~eiIN~~h-- 78 (372)
T KOG2711|consen 3 DEIKLDESIRNLGKAERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE--AEKLTEIINSRH-- 78 (372)
T ss_pred cccccchhhhccCchhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh--hHHHHHHhcccc--
Confidence 467899999999999999999999999999999999999874211 002589999998864432 479999999987
Q ss_pred HHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH
Q 012547 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (461)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~ 183 (461)
+|++|+|+++ +| .++.+++|+.+++++||++|.++|++++..++++|..+
T Consensus 79 -----eN~KYlpg~~-------lP------------------~NvvAv~dl~ea~~dADilvf~vPhQf~~~ic~~l~g~ 128 (372)
T KOG2711|consen 79 -----ENVKYLPGIK-------LP------------------ENVVAVPDLVEAAKDADILVFVVPHQFIPRICEQLKGY 128 (372)
T ss_pred -----ccccccCCcc-------CC------------------CCeEecchHHHHhccCCEEEEeCChhhHHHHHHHHhcc
Confidence 5999999863 32 26889999999999999999999999999999999999
Q ss_pred hhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHH--HHHH
Q 012547 184 WKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR--KPLA 261 (461)
Q Consensus 184 l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~--~~l~ 261 (461)
+++ +...||++||++...+ .++..++|++|.+.+|.| +.+++|||+|.|+++.+++.++++..++.. ..+.
T Consensus 129 vk~---~~~aISL~KG~e~~~~-g~~i~liS~iI~~~lgI~---~~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~ 201 (372)
T KOG2711|consen 129 VKP---GATAISLIKGVEVGEE-GPGIRLISQIIHRALGIP---CSVLMGANIASEVANEKFCETTIGYKDKKEAGILLK 201 (372)
T ss_pred cCC---CCeEEEeecceeccCC-CCceeehHHHHHHHhCCC---ceeecCCchHHHHHhccccceeEeccchhhcchHHH
Confidence 998 7889999999997632 225789999999999965 569999999999999999998887653333 3599
Q ss_pred HHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHh-CC-CchhhccC-hhh
Q 012547 262 KFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLL-AE-EPEKLAGP-LLA 335 (461)
Q Consensus 262 ~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~-G~-~~~t~~g~-glg 335 (461)
++|++++|+++..+|+.++|+||+||||+|+|+|+++| ++|++++++++++.||+.|++.+ .. .++||.+. |++
T Consensus 202 ~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~Em~~F~~~f~p~~~~~t~~escGva 281 (372)
T KOG2711|consen 202 KLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLEMIKFATHFYPGSKPTTFFESCGVA 281 (372)
T ss_pred HHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHHHHHHHHHHhCCCCCcceeeccccHH
Confidence 99999999999999999999999999999999999997 68999999999999999999886 45 67788886 999
Q ss_pred hhhhhccccchhHHHHHHhcC-CChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHH
Q 012547 336 DTYVTLLKGRNAWYGQELAKG-RLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLY 414 (461)
Q Consensus 336 Dl~~T~~~sRN~~~G~~l~~g-~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly 414 (461)
||++||+.+|||+++++++++ ++.++.++++-+++.+||+.|++.||+++++.|+ ++++|++++||
T Consensus 282 DlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~~L~~~~l-------------~~kfPlftaVy 348 (372)
T KOG2711|consen 282 DLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQKLQGPATAKEVYELLQKKGL-------------VEKFPLFTAVY 348 (372)
T ss_pred HHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCCcccCcHHHHHHHHHHHHcCh-------------hhhCcHHHHHH
Confidence 999999999999999999987 7777777777777899999999999999999997 56699999999
Q ss_pred HHHhcCCCHHHHHHHHHhcccCCCc
Q 012547 415 KILIMRESPIQAILEALRDETMNDP 439 (461)
Q Consensus 415 ~il~~~~~~~~~~~~~l~~~~~~~~ 439 (461)
+|++++. |.+++.++|+.++..+|
T Consensus 349 kI~~~~~-~~~~lle~l~~~~~~~~ 372 (372)
T KOG2711|consen 349 KICYERL-PPQALLECLRNHPEDDP 372 (372)
T ss_pred HHHhcCC-CHHHHHHHHhcccccCC
Confidence 9999988 89999999998876543
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-58 Score=471.49 Aligned_cols=323 Identities=25% Similarity=0.388 Sum_probs=285.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccc-hhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK-YVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~-~~~~~ 120 (461)
.+|||+|||+|+||+++|..|+++ | +|.+|.|++++++.+++++ .|..|++ ..
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~-g------~v~l~~~~~~~~~~i~~~~----------------~~~~~l~~~~--- 59 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARR-G------PTLQWVRSAETADDINDNH----------------RNSRYLGNDV--- 59 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C------CEEEEeCCHHHHHHHHhcC----------------CCcccCCCCc---
Confidence 458999999999999999999998 5 5889999988777644322 2445554 21
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+++ .++.+++|++++++++|+||++||+++++++++++.+++++ ++++|+++||+
T Consensus 60 ----~l~------------------~~i~~t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~---~~~vIsl~kGi 114 (341)
T PRK12439 60 ----VLS------------------DTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRP---WVPVVSLVKGL 114 (341)
T ss_pred ----ccC------------------CCeEEECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEEEeCC
Confidence 121 25778899998899999999999999999999999999886 67899999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
+.. +.+++++++++.++. .++++++||+++.|++.|.++.+++ +.+++..+.++++|++++|+++.++|++|
T Consensus 115 ~~~-----t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~g 187 (341)
T PRK12439 115 EQG-----TNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVG 187 (341)
T ss_pred cCC-----CCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHH
Confidence 987 578999999998862 4678899999999999999887765 55677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc--ccchhHHHHHH
Q 012547 280 HEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQEL 353 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l 353 (461)
+||+|++||++||++|++++ ++|+++++++++++||.++++++|++++||+|+ |+|||++||+ .||||+||++|
T Consensus 188 ve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~l 267 (341)
T PRK12439 188 VEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQL 267 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccccccchhhhhhhhccCCCCccHHHHHHH
Confidence 99999999999999999986 689999999999999999999999999999997 9999999996 59999999999
Q ss_pred hcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhc
Q 012547 354 AKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 433 (461)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l~~ 433 (461)
++|++++++.+.+ ++++||+.|++.++++++++|+ + +||++++|+||+++++|.+++..+|.+
T Consensus 268 ~~g~~~~~~~~~~--~~~~EG~~~~~~~~~~~~~~~~--------------~-~Pi~~~~~~il~~~~~~~~~~~~l~~~ 330 (341)
T PRK12439 268 GAGKPIDEIIASM--NQVAEGVKAASVVMEFADEYGL--------------N-MPIAREVDAVINHGSTVEQAYRGLIAE 330 (341)
T ss_pred HCCCCHHHHHHhc--CCEEehHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHhcC
Confidence 9999998877544 4679999999999999999995 6 899999999999999999999999999
Q ss_pred ccCCCc
Q 012547 434 ETMNDP 439 (461)
Q Consensus 434 ~~~~~~ 439 (461)
+.+.|.
T Consensus 331 ~~~~e~ 336 (341)
T PRK12439 331 VPGHEV 336 (341)
T ss_pred CCCccc
Confidence 999883
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=402.20 Aligned_cols=314 Identities=21% Similarity=0.333 Sum_probs=269.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++.+ + +|..|+++.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~-g-----~~V~l~~r~~~~~~~i~~~---------~-------~~~~~~~~~------ 52 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK-K-----ISVNLWGRNHTTFESINTK---------R-------KNLKYLPTC------ 52 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecCHHHHHHHHHc---------C-------CCcccCCCC------
Confidence 6899999999999999999999 8 9999999998877654322 1 234445432
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHh-cCCCEEEEcCCchhHHHHHHHHHH-HhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av-~~aDiIIiaVps~~~~~vl~~i~~-~l~~~~~~~iIIs~tkGi~ 201 (461)
.++ .++.+++|+++++ .++|+||++||+++++++++++.+ ++.+ ++.+|+++||++
T Consensus 53 -~~~------------------~~i~~~~~~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~---~~~vv~~~nGi~ 110 (326)
T PRK14620 53 -HLP------------------DNISVKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKK---NTPILICSKGIE 110 (326)
T ss_pred -cCC------------------CCeEEeCCHHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCC---CCEEEEEEcCee
Confidence 111 1577888988876 589999999999999999999998 8776 678999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (461)
.. +..++++.+.+.++. .++.+++||+++.+++.+.++.+.+ +.+.+..+.++++|++.+|+++.++|++|+
T Consensus 111 ~~-----~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~ 183 (326)
T PRK14620 111 KS-----SLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDIIGV 183 (326)
T ss_pred CC-----CCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEecCCHHHHHHHHHHHCCCCeEEEecCcchhh
Confidence 76 457789999998863 5677899999999999887765554 455667899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCC--CchhhccC-hhhhhhhhcc--ccchhHHHHH
Q 012547 281 EVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAE--EPEKLAGP-LLADTYVTLL--KGRNAWYGQE 352 (461)
Q Consensus 281 e~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~--~~~t~~g~-glgDl~~T~~--~sRN~~~G~~ 352 (461)
+|+|++||++|+++|+.+| ++|.+++++++++.||..+++++|+ +++++.++ |+||+++||. .||||+||+.
T Consensus 184 ~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~ 263 (326)
T PRK14620 184 QIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFK 263 (326)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcchhhccchhhhhhheecCCCCCcHHHHHH
Confidence 9999999999999999986 4688889999999999999999998 78999997 9999999995 8999999999
Q ss_pred HhcCCChhhHhhhhcCCC-ccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 012547 353 LAKGRLTLDLGDSIKGKG-MIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEAL 431 (461)
Q Consensus 353 l~~g~~~~~~~~~~~~~~-~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l 431 (461)
|++|...+|+.+ +++ ++||+++++.++++++++|+ + +|++++||++++++.+|.++++.+|
T Consensus 264 l~~g~~~~d~~~---~~~~~vegi~~~~~v~~~a~~~~i--------------~-~P~~~~l~~~~~~~~~~~~~~~~~~ 325 (326)
T PRK14620 264 IGNGFNINQILS---EGKSVIEGFSTVKPLISLAKKLNI--------------E-LPICESIYNLLYENISLEKTISVIL 325 (326)
T ss_pred HHCCCCHHHHHH---hCCCEeecHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHh
Confidence 999988777653 333 49999999999999999995 6 8999999999999999999998887
Q ss_pred h
Q 012547 432 R 432 (461)
Q Consensus 432 ~ 432 (461)
.
T Consensus 326 ~ 326 (326)
T PRK14620 326 S 326 (326)
T ss_pred C
Confidence 3
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=360.89 Aligned_cols=297 Identities=25% Similarity=0.406 Sum_probs=263.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..|||+|||+|+||+++|..|+++ | ++|++|+|++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~-G-----~~V~~~~r~~~-------------------------------------- 38 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASAN-G-----HRVRVWSRRSG-------------------------------------- 38 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHC-C-----CEEEEEeCCCC--------------------------------------
Confidence 358999999999999999999999 8 99999998742
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH-hhccCCCCEEEEEeecC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGV 200 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~-l~~~~~~~iIIs~tkGi 200 (461)
.+++++++++|+||+++|+.+++++++++.++ +.+ ++++|+++||+
T Consensus 39 ------------------------------~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~---~~ivi~~s~gi 85 (308)
T PRK14619 39 ------------------------------LSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPP---ETIIVTATKGL 85 (308)
T ss_pred ------------------------------CCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCC---CcEEEEeCCcc
Confidence 12345567899999999999999999999875 555 68999999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
++. +...+++.+.+.+. ..++.+++||+++.++..+.++.+++ +++.+..+.++++|+..+++++.++|++|
T Consensus 86 ~~~-----~~~~~s~~~~~~~~--~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 86 DPE-----TTRTPSQIWQAAFP--NHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred cCC-----CCcCHHHHHHHHcC--CCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 987 46788898887765 24677889999999999887766654 66788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc--ccchhHHHHHH
Q 012547 280 HEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQEL 353 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l 353 (461)
++|++++||++||++|+.++ +.|.+++++.+++.|+..+++++|.++++++++ |+||+++||. .|||+++|+.+
T Consensus 159 ~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~~~~~~rn~~~g~~l 238 (308)
T PRK14619 159 TELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNYQVGYGL 238 (308)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccccchhhhheeecCCCCccHHHHHHH
Confidence 99999999999999998875 578999999999999999999999999999987 9999999995 59999999999
Q ss_pred hcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhc
Q 012547 354 AKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 433 (461)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l~~ 433 (461)
++|++.+++.+++ .+++||+.+++.++++++++|+ + +|+++++|++++++.+|.+.+..+|.+
T Consensus 239 ~~g~~~~~~~~~~--~~~~eG~~~~~~~~~~~~~~~~--------------~-~Pl~~~v~~i~~~~~~~~~~~~~l~~~ 301 (308)
T PRK14619 239 AQGKSLEQILAEL--EGTAEGVNTANVLVQLAQQQNI--------------A-VPITEQVYRLLQGEITPQQALEELMER 301 (308)
T ss_pred HCCCCHHHHHHhc--CCEeecHHHHHHHHHHHHHcCC--------------C-CCHHHHHHHHHcCCCCHHHHHHHHHcC
Confidence 9999988877654 3589999999999999999995 6 899999999999999999999999999
Q ss_pred ccCCCc
Q 012547 434 ETMNDP 439 (461)
Q Consensus 434 ~~~~~~ 439 (461)
..+.||
T Consensus 302 ~~~~~~ 307 (308)
T PRK14619 302 DLKPEF 307 (308)
T ss_pred CCcccc
Confidence 888775
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=358.61 Aligned_cols=319 Identities=24% Similarity=0.347 Sum_probs=264.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++|||+|||+|+||+++|..|+++ | ++|++|+|++++++.++..+ .|..++++.
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~-G-----~~V~~~~r~~~~~~~i~~~~----------------~~~~~~~g~---- 56 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASK-G-----VPVRLWARRPEFAAALAAER----------------ENREYLPGV---- 56 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHhC----------------cccccCCCC----
Confidence 468999999999999999999999 8 99999999987766543211 123343321
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.++ .++..+++++++++++|+||+|||+++++++++.+. + +.++|+++||+.
T Consensus 57 ---~~~------------------~~~~~~~~~~e~~~~aD~Vi~~v~~~~~~~v~~~l~----~---~~~vi~~~~Gi~ 108 (328)
T PRK14618 57 ---ALP------------------AELYPTADPEEALAGADFAVVAVPSKALRETLAGLP----R---ALGYVSCAKGLA 108 (328)
T ss_pred ---cCC------------------CCeEEeCCHHHHHcCCCEEEEECchHHHHHHHHhcC----c---CCEEEEEeeccc
Confidence 110 136677889888899999999999999888886543 3 578999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (461)
+... ....+++.+.+... ..+.++.||+++.+++.+.++.++. +++++..+.++++|+..+++++.++|++|+
T Consensus 109 ~~~~---~~~~l~~~l~~~~~---~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~ 182 (328)
T PRK14618 109 PDGG---RLSELARVLEFLTQ---ARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGV 182 (328)
T ss_pred cCCC---ccchHHHHHHHhcC---CCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccch
Confidence 6521 24456666654222 2457899999999999998776654 667888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc--ccchhHHHHHHh
Q 012547 281 EVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELA 354 (461)
Q Consensus 281 e~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~ 354 (461)
+|++++||++|+++|+..+ +.|.+++++.++++||..+++++|.++++++++ |+|||++||. .+||+++|+.++
T Consensus 183 ~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~ 262 (328)
T PRK14618 183 ELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIV 262 (328)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHh
Confidence 9999999999999998875 588899999999999999999999999999996 9999999984 899999999999
Q ss_pred cCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhcc
Q 012547 355 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDE 434 (461)
Q Consensus 355 ~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l~~~ 434 (461)
+|++.++.. .+..+.||+.+++.++++++++++ + +|+++++|++|+++.+|.++++.+|.++
T Consensus 263 ~g~~~~~~~---~~~~~~~g~kd~~~~~~la~~~~~--------------~-~Pl~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (328)
T PRK14618 263 RGVDREHLE---AGGKVVEGLYTVKALDAWAKAHGH--------------D-LPIVEAVARVARGGWDPLAGLRSLMGRE 324 (328)
T ss_pred CCCCHHHHH---HcCCEEecHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHhcCC
Confidence 997765432 234568999999999999999995 6 8999999999999999999999999988
Q ss_pred cCCC
Q 012547 435 TMND 438 (461)
Q Consensus 435 ~~~~ 438 (461)
.+.|
T Consensus 325 ~~~~ 328 (328)
T PRK14618 325 AKEE 328 (328)
T ss_pred CCCC
Confidence 8754
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=323.81 Aligned_cols=318 Identities=25% Similarity=0.403 Sum_probs=267.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
||||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++.++ .+..+.++.
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~----- 53 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN-G-----HDVTLWARDPEQAAEINADR----------------ENPRYLPGI----- 53 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHcC----------------cccccCCCC-----
Confidence 47999999999999999999999 8 99999999987776533221 011222211
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.++ .++.+++|++++++++|+||+|||+++++++++++.+++.+ ++++|+++||+++
T Consensus 54 --~~~------------------~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~---~~~vi~~~ngv~~ 110 (325)
T PRK00094 54 --KLP------------------DNLRATTDLAEALADADLILVAVPSQALREVLKQLKPLLPP---DAPIVWATKGIEP 110 (325)
T ss_pred --cCC------------------CCeEEeCCHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhcCC---CCEEEEEeecccC
Confidence 110 14567788888889999999999999999999999998876 7899999999998
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHHH
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (461)
+ +...+++.+++.++.. ...+++.||+++.++..+.++.+.. +.+.+..+.++++|+..+++++.++|+.|.+
T Consensus 111 ~-----~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~ 184 (325)
T PRK00094 111 G-----TGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVIGVE 184 (325)
T ss_pred C-----CCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhh
Confidence 6 4577888888877531 2467899999999988887766554 5567888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc--ccchhHHHHHHhc
Q 012547 282 VMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELAK 355 (461)
Q Consensus 282 ~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~~ 355 (461)
|++++||++++++|...+ +.|...+++..+++|+..+++++|.+++++.+. +.||++.+|. .+||+.+|..+++
T Consensus 185 ~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~ 264 (325)
T PRK00094 185 LGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQ 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHC
Confidence 999999999999988764 578788899999999999999999999999885 8999999995 5999999999999
Q ss_pred CCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhc
Q 012547 356 GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 433 (461)
Q Consensus 356 g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l~~ 433 (461)
|.+..++.+.. +.+.||...++.++++++++|+ + +|+++++|++++++++|.+.++.++.|
T Consensus 265 ~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~~~--------------~-~P~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (325)
T PRK00094 265 GKSLEEALAEI--GMVAEGVRTAKAVYELAKKLGV--------------E-MPITEAVYAVLYEGKDPREAVEDLMGR 325 (325)
T ss_pred CCCHHHHHHHc--CCEeecHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHcCCCCHHHHHHHHhcC
Confidence 98765554432 2579999999999999999995 7 899999999999999999999998864
|
|
| >PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=249.54 Aligned_cols=141 Identities=33% Similarity=0.524 Sum_probs=124.8
Q ss_pred CChHHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCch-hhccC-hhhhhhhhcc--ccchh
Q 012547 275 GDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPE-KLAGP-LLADTYVTLL--KGRNA 347 (461)
Q Consensus 275 ~Di~gve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~-t~~g~-glgDl~~T~~--~sRN~ 347 (461)
+|++|+|+||++||+|||++|++++ ++|+++++++++++||.+|++++|++++ ||+++ |+|||++||+ .||||
T Consensus 1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~ 80 (149)
T PF07479_consen 1 SDVVGVELCGALKNIYAIAAGIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNR 80 (149)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcH
Confidence 6999999999999999999999986 6999999999999999999999999999 99997 9999999996 59999
Q ss_pred HHHHHHhcC-CChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHH
Q 012547 348 WYGQELAKG-RLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQA 426 (461)
Q Consensus 348 ~~G~~l~~g-~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~ 426 (461)
+||+.+++| ++.+++.+.+.+++++||+.+++.++++++++++ + +|+++++|+||+++.+|.++
T Consensus 81 ~~G~~l~~g~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i--------------~-~Pl~~~vy~Il~~~~~~~~~ 145 (149)
T PF07479_consen 81 RFGKALGKGGKSIEEAEKEMLGGQTVEGVRTAKIVYELAEKYNI--------------E-FPLFTAVYKILYENESPEEA 145 (149)
T ss_dssp HHHHHHHHTTS-HHHHHHHHTTTS--HHHHHHHHHHHHHHHCT---------------G-SHHHHHHHHHHHS---HHHH
T ss_pred HHHHHHHccCCCHHHHHHhhhhcchHHHHHHHHHHHHHHHHhCC--------------C-ChHHHHHHHHHcCcCCHHHH
Confidence 999999999 8888888777667899999999999999999995 6 89999999999999999998
Q ss_pred HHHH
Q 012547 427 ILEA 430 (461)
Q Consensus 427 ~~~~ 430 (461)
+.++
T Consensus 146 i~~l 149 (149)
T PF07479_consen 146 IEEL 149 (149)
T ss_dssp HHHH
T ss_pred HHcC
Confidence 8764
|
1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B .... |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=210.59 Aligned_cols=154 Identities=32% Similarity=0.561 Sum_probs=123.5
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (461)
||+|||+|+||+++|..|+.+ | ++|++|+|+++.++.++.+ + +|+.|+++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g-----~~V~l~~~~~~~~~~i~~~---------~-------~n~~~~~~~------- 51 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-G-----HEVTLWGRDEEQIEEINET---------R-------QNPKYLPGI------- 51 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-T-----EEEEEETSCHHHHHHHHHH---------T-------SETTTSTTS-------
T ss_pred CEEEECcCHHHHHHHHHHHHc-C-----CEEEEEeccHHHHHHHHHh---------C-------CCCCCCCCc-------
Confidence 799999999999999999999 8 9999999999877764432 2 467787764
Q ss_pred ccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcccc
Q 012547 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAEL 204 (461)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~ 204 (461)
+++ .++.+++|+++++++||+||++||+++++++++++.+++++ ++++|+++||++..
T Consensus 52 ~l~------------------~~i~~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~---~~~ii~~~KG~~~~- 109 (157)
T PF01210_consen 52 KLP------------------ENIKATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKK---GQIIISATKGFEPG- 109 (157)
T ss_dssp BEE------------------TTEEEESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHT---T-EEEETS-SEETT-
T ss_pred ccC------------------cccccccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCC---CCEEEEecCCcccC-
Confidence 232 26889999999999999999999999999999999999987 78999999999766
Q ss_pred ccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChh
Q 012547 205 EAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEK 255 (461)
Q Consensus 205 ~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~ 255 (461)
+..++++++++.++.+ ++++++||+||.|++.+.++.+++ +.+.+
T Consensus 110 ----~~~~~~~~i~~~~~~~--~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 110 ----TLLLLSEVIEEILPIP--RIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp ----EEEEHHHHHHHHHSSC--GEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred ----CCccHHHHHHHHhhhc--ceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 6789999999999853 489999999999999999998876 44443
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-24 Score=211.62 Aligned_cols=282 Identities=18% Similarity=0.161 Sum_probs=190.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++.+++ .+.. ++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~g~-------------------~~~~-----~~ 50 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA-G-----HDVTLVARRGAHLDALNENGL-------------------RLED-----GE 50 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECChHHHHHHHHcCC-------------------cccC-----Cc
Confidence 7999999999999999999998 8 999999998776655332211 0000 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.. .++..+++++++ +++|+||+|||+++++++++++.+++.+ ++.||+++||+...
T Consensus 51 ~~--------------------~~~~~~~~~~~~-~~~d~vila~k~~~~~~~~~~l~~~l~~---~~~iv~~~nG~~~~ 106 (304)
T PRK06522 51 IT--------------------VPVLAADDPAEL-GPQDLVILAVKAYQLPAALPSLAPLLGP---DTPVLFLQNGVGHL 106 (304)
T ss_pred ee--------------------ecccCCCChhHc-CCCCEEEEecccccHHHHHHHHhhhcCC---CCEEEEecCCCCcH
Confidence 00 022344566654 8999999999999999999999998876 68899999999765
Q ss_pred cccccccCCHHHHHHhHhCCCC------CcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCCh
Q 012547 204 LEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~------~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
+.+.+.++... ...+.+.+|+.+.+.+.+...+.......+..+.+.++|+..++.++.++|+
T Consensus 107 -----------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di 175 (304)
T PRK06522 107 -----------EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAAAEALADLLNAAGLDVEWSPDI 175 (304)
T ss_pred -----------HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHH
Confidence 45666554211 0123477888887776654322222222344778999999999999999999
Q ss_pred HHHHHHHHHHHHHHH----HHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhccccchhHHH
Q 012547 278 VTHEVMGGLKNVYAI----GAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYG 350 (461)
Q Consensus 278 ~gve~~galKNv~Ai----~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~G 350 (461)
.+.+|.++++|+... .+|...+ .++....++...+.|+..++++.|.+...- .+.+.+... .
T Consensus 176 ~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~---~~~~~~~~~--------~ 244 (304)
T PRK06522 176 RTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVE---EVREYVRQV--------I 244 (304)
T ss_pred HHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChH---HHHHHHHHH--------h
Confidence 999999999997432 2333322 122334688899999999999999875321 011111111 0
Q ss_pred HHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 351 QELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 351 ~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
....... ++..+|..+++++ +|-++. .++++++++|+ + +|.++++|+++..
T Consensus 245 ~~~~~~~-sSm~~D~~~gr~tEid~i~G--~~v~~a~~~gv--------------~-~P~~~~l~~~~~~ 296 (304)
T PRK06522 245 QKTAANT-SSMLQDLEAGRPTEIDAIVG--YVLRRGRKHGI--------------P-TPLNDALYGLLKA 296 (304)
T ss_pred hccCCCC-chHHHHHHcCCCcccchhcc--HHHHHHHHcCC--------------C-CcHHHHHHHHHHH
Confidence 0111111 1223333344444 666666 79999999995 7 8999999999975
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-22 Score=199.42 Aligned_cols=282 Identities=19% Similarity=0.191 Sum_probs=183.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|+++ | ++|++|+| +++++.++++++ ...... ++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~-g-----~~V~~~~r-~~~~~~~~~~g~-------------------~~~~~~---~~ 51 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA-G-----RDVTFLVR-PKRAKALRERGL-------------------VIRSDH---GD 51 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-C-----CceEEEec-HHHHHHHHhCCe-------------------EEEeCC---Ce
Confidence 7999999999999999999999 8 99999999 666554332111 011000 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
..+ +...++|.+++..++|+||+|||+++++++++++.+++.+ +++||+++||++..
T Consensus 52 ~~~--------------------~~~~~~~~~~~~~~~d~vilavk~~~~~~~~~~l~~~~~~---~~~ii~~~nG~~~~ 108 (305)
T PRK12921 52 AVV--------------------PGPVITDPEELTGPFDLVILAVKAYQLDAAIPDLKPLVGE---DTVIIPLQNGIGQL 108 (305)
T ss_pred EEe--------------------cceeecCHHHccCCCCEEEEEecccCHHHHHHHHHhhcCC---CCEEEEeeCCCChH
Confidence 000 2234567777668999999999999999999999998876 68899999999765
Q ss_pred cccccccCCHHHHHHhHhCCCCCc------EEEEeCcchhHhhhccCceEEEEe-CChhHHHHHHHHhcCCCceEEecCC
Q 012547 204 LEAVPRIITPTQMINRATGVPIEN------ILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~------v~vlsGPn~a~ev~~g~~~~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
+.+.+.++....- .+.+.+|+.......+...+.... ...+..+.+.++|...++.+..++|
T Consensus 109 -----------~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 109 -----------EQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQRSERTRAVRDALAGARLEVVLSEN 177 (305)
T ss_pred -----------HHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCcCHHHHHHHHHHHhCCCCceecHH
Confidence 4566666531100 122234444333222211111111 1235667899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH-Hhhcc---C---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhh-cc-ccchh
Q 012547 277 LVTHEVMGGLKNVYAIG-AALTN---E---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVT-LL-KGRNA 347 (461)
Q Consensus 277 i~gve~~galKNv~Ai~-~Gi~~---g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T-~~-~sRN~ 347 (461)
+...+|.+.+.|+.-.. +.+.+ + .+.....++...+.|+..++++.|.+..... +-+.+.. +. ...|+
T Consensus 178 i~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~---~~~~~~~~~~~~~~~~ 254 (305)
T PRK12921 178 IRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRDDV---VEEIVKIFAGAPGDMK 254 (305)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCChhH---HHHHHHHHhccCCCCC
Confidence 99999999999964222 22221 1 1223346888999999999999999753210 1111110 00 11111
Q ss_pred HHHHHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 348 WYGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 348 ~~G~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
++..+|..+++++ +|-++. .++++++++|+ + +|.++++|.++..
T Consensus 255 -----------sSm~~D~~~gr~tEid~i~G--~vv~~a~~~gv--------------~-~P~~~~l~~~~~~ 299 (305)
T PRK12921 255 -----------TSMLRDMEKGRPLEIDHLQG--VLLRRARAHGI--------------P-TPILDTVYALLKA 299 (305)
T ss_pred -----------cHHHHHHHcCCcccHHHHHH--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 1223333344544 666666 79999999995 7 8999999999875
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-22 Score=200.41 Aligned_cols=283 Identities=17% Similarity=0.165 Sum_probs=188.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+|||+|||+|+||+.+|..|+++ | ++|++|.|+.. +.++.+++ .+....
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-g-----~~V~~~~r~~~--~~~~~~g~-------------------~~~~~~--- 53 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-G-----FDVHFLLRSDY--EAVRENGL-------------------QVDSVH--- 53 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCH--HHHHhCCe-------------------EEEeCC---
Confidence 348999999999999999999999 8 99999999862 32221110 111000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
++..+ .++.++++++ ....+|+||+|||+.++.++++.+.+++.+ ++.+++++||++
T Consensus 54 ~~~~~-------------------~~~~~~~~~~-~~~~~D~vilavK~~~~~~~~~~l~~~~~~---~~~iv~lqNG~~ 110 (313)
T PRK06249 54 GDFHL-------------------PPVQAYRSAE-DMPPCDWVLVGLKTTANALLAPLIPQVAAP---DAKVLLLQNGLG 110 (313)
T ss_pred CCeee-------------------cCceEEcchh-hcCCCCEEEEEecCCChHhHHHHHhhhcCC---CCEEEEecCCCC
Confidence 00000 1234455554 367899999999999999999999999887 688999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCC-c-----EEEEeCcchhHhhhccCceEEEEeC-C-----hhHHHHHHHHhcCCCc
Q 012547 202 AELEAVPRIITPTQMINRATGVPIE-N-----ILYLGGPNIASEIYNKEYANARICG-A-----EKWRKPLAKFLRRPHF 269 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~-~-----v~vlsGPn~a~ev~~g~~~~~~~~~-~-----~~~~~~l~~ll~~~g~ 269 (461)
.. +.+.+.++.... . .+...+|+.....+.+...+....+ + .+..+.+.++|+..++
T Consensus 111 ~~-----------e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~ 179 (313)
T PRK06249 111 VE-----------EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDGITARVEEGAALFRAAGI 179 (313)
T ss_pred cH-----------HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCC
Confidence 76 567777753210 0 1234577765554444433222222 2 3556788999999999
Q ss_pred eEEecCChHHHHHHHHHHHHH----HHHHhhccC----ccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhc
Q 012547 270 TVWDNGDLVTHEVMGGLKNVY----AIGAALTNE----SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTL 341 (461)
Q Consensus 270 ~v~~s~Di~gve~~galKNv~----Ai~~Gi~~g----~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~ 341 (461)
.+..++|+....|.+.+.|+. +..++...+ .+..+ .++...+.|+..++++.|.+.... -+-..+..+
T Consensus 180 ~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~-~l~~~~~~E~~~va~a~Gi~~~~~---~~~~~~~~~ 255 (313)
T PRK06249 180 DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSR-ALIRALMAEVIQGAAACGHTLPEG---YADHMLAVT 255 (313)
T ss_pred CceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHH-HHHHHHHHHHHHHHHhcCCCCChh---HHHHHHHHh
Confidence 999999999999999888762 333333222 12233 688899999999999999863221 011111111
Q ss_pred cccchhHHHHHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 342 LKGRNAWYGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 342 ~~sRN~~~G~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
....... ++..+|..++++| +|.+++ .++++++++|+ + +|+++++|.+++.
T Consensus 256 ---------~~~~~~~-sSM~qD~~~gr~tEid~i~G--~vv~~a~~~Gi--------------~-~P~~~~l~~~l~~ 307 (313)
T PRK06249 256 ---------ERMPDYR-PSMYHDFEEGRPLELEAIYA--NPLAAARAAGC--------------A-MPRVEMLYQALEF 307 (313)
T ss_pred ---------hcCCCCC-ChHHHHHHCCCcccHHHHhh--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 0111111 2223343455555 888877 99999999995 7 8999999999875
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-22 Score=201.96 Aligned_cols=294 Identities=18% Similarity=0.156 Sum_probs=190.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+++ | ++|++|+|++. .+.++.+++ ......+.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~-G-----~~V~~~~r~~~-~~~~~~~g~----------------~~~~~~~~----- 53 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA-G-----ADVTLIGRARI-GDELRAHGL----------------TLTDYRGR----- 53 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc-C-----CcEEEEecHHH-HHHHHhcCc----------------eeecCCCc-----
Confidence 58999999999999999999999 8 99999999752 233221110 00000000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
..... ...+.++++. +++.++|+||+|||+.++.++++++.+++.+ +++|++++||+..
T Consensus 54 ~~~~~-----------------~~~~~~~~~~-~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~---~~iii~~~nG~~~ 112 (341)
T PRK08229 54 DVRVP-----------------PSAIAFSTDP-AALATADLVLVTVKSAATADAAAALAGHARP---GAVVVSFQNGVRN 112 (341)
T ss_pred ceecc-----------------cceeEeccCh-hhccCCCEEEEEecCcchHHHHHHHHhhCCC---CCEEEEeCCCCCc
Confidence 00000 0134556676 4578999999999999999999999998876 6889999999876
Q ss_pred ccccccccCCHHHHHHhHhCCCCC-----cE-EEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCC
Q 012547 203 ELEAVPRIITPTQMINRATGVPIE-----NI-LYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~-----~v-~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
. +.+++.++.... .+ ++..||+.+.....+.. .+. ..+..+.++++|+..+++++.++|
T Consensus 113 ~-----------~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l---~~~-~~~~~~~~~~~l~~~g~~~~~~~d 177 (341)
T PRK08229 113 A-----------DVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGAL---AIE-ASPALRPFAAAFARAGLPLVTHED 177 (341)
T ss_pred H-----------HHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCce---Eec-CCchHHHHHHHHHhcCCCceecch
Confidence 4 456666543110 11 24668887765444432 222 234468899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC-------ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC---hhhhhh-hhccccc
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNE-------SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP---LLADTY-VTLLKGR 345 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g-------~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~---glgDl~-~T~~~sR 345 (461)
+.+.+|.++++|++...+.+.+. .+..+ .++..++.|...++++.|.++..+..+ ++..++ ..+...+
T Consensus 178 i~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~-~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (341)
T PRK08229 178 MRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYR-RCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFR 256 (341)
T ss_pred hHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHH-HHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHH
Confidence 99999999999975444444332 12233 577789999999999999987654331 111110 0000000
Q ss_pred hhHHHHHHhcCC--ChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 346 NAWYGQELAKGR--LTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 346 N~~~G~~l~~g~--~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
......+.... ..+..+|...+++| +|.++. .++++++++|+ + +|+++++|+++..
T Consensus 257 -~~~~~~~~~~~~~~~Sm~~D~~~~r~tEi~~i~G--~i~~~a~~~gv--------------~-~P~~~~~~~~~~~ 315 (341)
T PRK08229 257 -RLAGRMLAIDPLARSSMSDDLAAGRATEIDWING--EIVRLAGRLGA--------------P-APVNARLCALVHE 315 (341)
T ss_pred -HHHHHhhccCCccCchHHHHHHcCCcchHHHHhh--HHHHHHHHcCC--------------C-CcHHHHHHHHHHH
Confidence 00001111111 12223333345555 777777 99999999995 6 8999999998853
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-21 Score=192.94 Aligned_cols=278 Identities=21% Similarity=0.261 Sum_probs=192.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|+|+|+||+.+|..|++. | ++|+++.|++. ++++++++| .+.... +.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-g-----~~V~~~~R~~~-~~~l~~~GL-------------------~i~~~~---~~ 51 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-G-----HDVTLLVRSRR-LEALKKKGL-------------------RIEDEG---GN 51 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-----CeEEEEecHHH-HHHHHhCCe-------------------EEecCC---Cc
Confidence 7999999999999999999999 7 89999999985 666544332 111100 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
. ......+++. +....+|+||++||+.+++++++.+.+++++ ++.|++++||+++.
T Consensus 52 --~------------------~~~~~~~~~~-~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~---~t~vl~lqNG~g~~ 107 (307)
T COG1893 52 --F------------------TTPVVAATDA-EALGPADLVIVTVKAYQLEEALPSLAPLLGP---NTVVLFLQNGLGHE 107 (307)
T ss_pred --c------------------ccccccccCh-hhcCCCCEEEEEeccccHHHHHHHhhhcCCC---CcEEEEEeCCCcHH
Confidence 0 0012223333 4467999999999999999999999999998 78999999999987
Q ss_pred cccccccCCHHHHHHhHhCCC------CCcEEEEeCcchhHhhhccCceEEEEe-CChhHHHHHHHHhcCCCceEEecCC
Q 012547 204 LEAVPRIITPTQMINRATGVP------IENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~------~~~v~vlsGPn~a~ev~~g~~~~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
|.+.+.++.. ....+.+.||+.....+.|...+.... ..++..+.+.++|+..++.+.+++|
T Consensus 108 -----------e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 108 -----------EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred -----------HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 5566665532 111256677887777665655444443 3457789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH--Hhhcc---C--ccch-HHHHHHHHHHHHHHHHHHhCCCch-hhccChhhhhhhhcc-c-cc
Q 012547 277 LVTHEVMGGLKNVYAIG--AALTN---E--SATS-KSVYFAHCTSEMVFITHLLAEEPE-KLAGPLLADTYVTLL-K-GR 345 (461)
Q Consensus 277 i~gve~~galKNv~Ai~--~Gi~~---g--~~n~-~a~l~~~~~~Em~~l~~a~G~~~~-t~~g~glgDl~~T~~-~-sR 345 (461)
+....|.+++.|. ++. +.+.+ + ..+. -..++...+.|...++.+.|.... ... -.+...+. . ..
T Consensus 177 i~~~~w~Kl~~N~-~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~~~~~----~~v~~~~~~~~~~ 251 (307)
T COG1893 177 ILAAIWRKLVVNA-AINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELPEEVV----ERVLAVIRATDAE 251 (307)
T ss_pred HHHHHHHHHHhhh-ccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCCHHHH----HHHHHHHHhcccc
Confidence 9999999999888 333 23322 2 1331 225788899999999999995321 111 11111110 1 23
Q ss_pred hhH-HHHHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 346 NAW-YGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 346 N~~-~G~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
|++ +-+++. ++++| +|-+++ +++++++++|+ + +|.+++||++++.
T Consensus 252 ~~sSM~qDl~------------~gr~tEid~i~G--~vv~~a~~~gi--------------~-~P~~~~L~~lvk~ 298 (307)
T COG1893 252 NYSSMLQDLE------------KGRPTEIDAING--AVVRLAKKHGL--------------A-TPVNDTLYALLKA 298 (307)
T ss_pred cCchHHHHHH------------cCCcccHHHHhh--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 332 222333 33344 677766 99999999995 6 9999999999975
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=195.10 Aligned_cols=276 Identities=13% Similarity=0.047 Sum_probs=183.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhh-hHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAE-HLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~-~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.|||+|+|+|++|+.+|..|++. | ++|++++|+.+++++++++ ++ .+...
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-G-----~~V~lv~r~~~~~~~i~~~~Gl-------------------~i~~~---- 52 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-G-----LPVRLILRDRQRLAAYQQAGGL-------------------TLVEQ---- 52 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEechHHHHHHhhcCCe-------------------EEeeC----
Confidence 58999999999999999999999 8 9999999988777764432 11 11100
Q ss_pred cC-CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 122 GD-RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 122 ~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
++ ..+ ++...+ .+ ....+|+||+|||++++.++++++.+++.+ ++.||+++||+
T Consensus 53 g~~~~~--------------------~~~~~~-~~-~~~~~D~viv~vK~~~~~~al~~l~~~l~~---~t~vv~lQNGv 107 (305)
T PRK05708 53 GQASLY--------------------AIPAET-AD-AAEPIHRLLLACKAYDAEPAVASLAHRLAP---GAELLLLQNGL 107 (305)
T ss_pred Ccceee--------------------ccCCCC-cc-cccccCEEEEECCHHhHHHHHHHHHhhCCC---CCEEEEEeCCC
Confidence 00 000 111111 11 235789999999999999999999999987 78999999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcE--------EEEeCcchhHhhhccCceEEEEe-CChhHHHHHHHHhcCCCceE
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENI--------LYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTV 271 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v--------~vlsGPn~a~ev~~g~~~~~~~~-~~~~~~~~l~~ll~~~g~~v 271 (461)
... +.+++.++.. ++ +...+|+...+.+.+. +.++ .+.+..+.+.++|...++.+
T Consensus 108 ~~~-----------e~l~~~~~~~--~v~~g~~~~ga~~~~pg~v~~~~~g~---~~~G~~~~~~~~~l~~~l~~ag~~~ 171 (305)
T PRK05708 108 GSQ-----------DAVAARVPHA--RCIFASSTEGAFRDGDWRVVFAGHGF---TWLGDPRNPTAPAWLDDLREAGIPH 171 (305)
T ss_pred CCH-----------HHHHHhCCCC--cEEEEEeeeceecCCCCEEEEeceEE---EEEcCCCCcchHHHHHHHHhcCCCC
Confidence 886 5677777532 21 1223555544433332 1232 23345678899999999999
Q ss_pred EecCChHHHHHHHHHHHHH-HHHHhhc---cC--ccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhccccc
Q 012547 272 WDNGDLVTHEVMGGLKNVY-AIGAALT---NE--SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGR 345 (461)
Q Consensus 272 ~~s~Di~gve~~galKNv~-Ai~~Gi~---~g--~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~~sR 345 (461)
.+++|+.+..|.+.+.|+. ...+.+. .+ ..+ . .++...+.|+..++++.|...... ++...
T Consensus 172 ~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~-~-~~~~~l~~E~~~va~a~G~~~~~~------~~~~~----- 238 (305)
T PRK05708 172 EWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEH-A-QEVAALCAELSELLRRCGQPAAAA------NLHEE----- 238 (305)
T ss_pred ccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcC-H-HHHHHHHHHHHHHHHHcCCCccHH------HHHHH-----
Confidence 9999999999999998873 2223333 22 122 1 467788999999999999853211 11100
Q ss_pred hhHHHHHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 346 NAWYGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 346 N~~~G~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
..+........+ ++..+|..+++++ +|-+++ .++++++++|+ + +|.++++|.+++.
T Consensus 239 ~~~~~~~~~~~~-sSM~qD~~~gR~tEid~i~G--~vvr~a~~~Gv--------------~-~P~~~~l~~~v~~ 295 (305)
T PRK05708 239 VQRVIQATAANY-SSMYQDVRAGRRTEISYLLG--YACRAADRHGL--------------P-LPRLQHLQQRLVA 295 (305)
T ss_pred HHHHHHhccCCC-cHHHHHHHcCCceeehhhhh--HHHHHHHHcCC--------------C-CchHHHHHHHHHH
Confidence 001111111112 2233444455555 788777 99999999995 7 8999999998864
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=180.65 Aligned_cols=272 Identities=17% Similarity=0.188 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCCccchhhhh
Q 012547 53 AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEIL 132 (461)
Q Consensus 53 amG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~ 132 (461)
++|+.+|..|+++ | ++|++|+|+ ++++.++++++ .+.... ++...
T Consensus 1 aiG~~~a~~L~~~-G-----~~V~l~~r~-~~~~~i~~~Gl-------------------~i~~~~---~~~~~------ 45 (293)
T TIGR00745 1 AVGSLYGAYLARA-G-----HDVTLLARG-EQLEALNQEGL-------------------RIVSLG---GEFQF------ 45 (293)
T ss_pred CchHHHHHHHHhC-C-----CcEEEEecH-HHHHHHHHCCc-------------------EEEecC---CcEEE------
Confidence 5899999999999 8 999999997 55555433221 111100 00000
Q ss_pred hhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCC
Q 012547 133 KDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIIT 212 (461)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~ 212 (461)
.++.+++|+++ ..++|+||+|||+++++++++.+.+++.+ +++||+++||++..
T Consensus 46 -------------~~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~l~~l~~~l~~---~~~iv~~qNG~g~~--------- 99 (293)
T TIGR00745 46 -------------RPVSAATSPEE-LPPADLVIITVKAYQTEEAAALLLPLIGK---NTKVLFLQNGLGHE--------- 99 (293)
T ss_pred -------------cccccccChhh-cCCCCEEEEeccchhHHHHHHHhHhhcCC---CCEEEEccCCCCCH---------
Confidence 02345566665 67899999999999999999999999987 78999999999876
Q ss_pred HHHHHHhHhCCCCC------cEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHHHHHHHHH
Q 012547 213 PTQMINRATGVPIE------NILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGL 286 (461)
Q Consensus 213 ~se~i~~~lg~~~~------~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~gal 286 (461)
+.+.+.++.+.. ..+.+.||+...+.+.+...+....+..+..+.+.++|...++.+..++|+.+.+|.+.+
T Consensus 100 --~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~ 177 (293)
T TIGR00745 100 --ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAELLNEAGIPAELHGDILAAIWKKLL 177 (293)
T ss_pred --HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHh
Confidence 556666653210 123456777666555443222222122255688999999999999999999999999999
Q ss_pred HHH-HHHHHhhccC-----ccch-HHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhh-c-cccchh-HHHHHHhcC
Q 012547 287 KNV-YAIGAALTNE-----SATS-KSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVT-L-LKGRNA-WYGQELAKG 356 (461)
Q Consensus 287 KNv-~Ai~~Gi~~g-----~~n~-~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T-~-~~sRN~-~~G~~l~~g 356 (461)
.|+ +...+++.+. ..+. ...++...+.|+..++++.|.+..... +-+.+.. + ..+.|+ ++-+++.+
T Consensus 178 ~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~---~~~~~~~~~~~~~~~~sSm~~D~~~- 253 (293)
T TIGR00745 178 VNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDE---VEELVRAVIRMTAENTSSMLQDLLR- 253 (293)
T ss_pred heechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCCCCChHHHHHHc-
Confidence 997 4445555542 1222 236888999999999999998654311 1111111 1 122222 22233333
Q ss_pred CChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 357 RLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 357 ~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
++++ +|-++. .++++++++|+ + +|.++.+|++++.
T Consensus 254 -----------gr~tEid~i~G--~~v~~a~~~gv--------------~-~P~~~~l~~~~~~ 289 (293)
T TIGR00745 254 -----------GRRTEIDAING--AVVRLAEKLGI--------------D-APVNRTLYALLKA 289 (293)
T ss_pred -----------CCcchHHHhcc--HHHHHHHHcCC--------------C-CChHHHHHHHHHH
Confidence 3333 555555 89999999995 7 8999999999875
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.3e-18 Score=176.69 Aligned_cols=224 Identities=17% Similarity=0.169 Sum_probs=160.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||..+|..|+++ | |+|++|++++++++.++ .+ .++.+.+++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~-G-----~~V~~~d~~~~~v~~l~---------~g--------~~~~~e~~l~----- 52 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL-G-----HEVTGVDIDQEKVDKLN---------KG--------KSPIYEPGLD----- 52 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc-C-----CeEEEEECCHHHHHHhh---------cC--------CCCCCCCCHH-----
Confidence 6899999999999999999999 8 99999999998776533 22 1333444332
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch----------hHHHHHHHHHHHhhccCCCCEE
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~----------~~~~vl~~i~~~l~~~~~~~iI 193 (461)
+++.+.... .++.++++++++++++|+||+|||+. ++.++++.+.+.+++ ++++
T Consensus 53 ------~~~~~~~~~-------g~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~---g~lv 116 (411)
T TIGR03026 53 ------ELLAKALAA-------GRLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRK---GATV 116 (411)
T ss_pred ------HHHHHhhhc-------CCeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCC---CCEE
Confidence 122111100 13678889988899999999999965 488888999888876 6666
Q ss_pred EEEeecCccccccccccCCH-HHHHHhHhCCC-CCcEEEEeCcchhHhhhc----cCceEEEEeCChhHHHHHHHHhcCC
Q 012547 194 ISLAKGVEAELEAVPRIITP-TQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRP 267 (461)
Q Consensus 194 Is~tkGi~~~~~~~~~~~~~-se~i~~~lg~~-~~~v~vlsGPn~a~ev~~----g~~~~~~~~~~~~~~~~l~~ll~~~ 267 (461)
|.. .++.+.+ ...+ .+++++..|.. ...+.+.++|.++.+... ..+..++++.+++..+.++++|+..
T Consensus 117 i~~-STv~pgt-----~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~ 190 (411)
T TIGR03026 117 VLE-STVPPGT-----TEEVVKPILERASGLKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPI 190 (411)
T ss_pred EEe-CcCCCCc-----hHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 654 4777662 2233 23334423321 234568899999887553 2344556677888889999999877
Q ss_pred C-ceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 268 H-FTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 268 g-~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
+ ..++...|+...|+.+++.|.+. +.....++|+..+|+++|.|+.++.+
T Consensus 191 ~~~~~~~~~~~~~Ae~~Kl~~N~~~--------------a~~ia~~nE~~~la~~~GiD~~~v~~ 241 (411)
T TIGR03026 191 IEDGPVLVTSIETAEMIKLAENTFR--------------AVKIAFANELARICEALGIDVYEVIE 241 (411)
T ss_pred ccCCCEEcCCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5 46777889999999999999852 22224789999999999999988754
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=165.50 Aligned_cols=198 Identities=16% Similarity=0.080 Sum_probs=146.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.|||+|||+|+||.+|+..|.++ |++.+ .+|++|+|++++++.+. +. +
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~-g~~~~-~~I~v~~r~~~~~~~l~--------~~-------------~--------- 49 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINK-NIVSP-DQIICSDLNVSNLKNAS--------DK-------------Y--------- 49 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHC-CCCCC-ceEEEECCCHHHHHHHH--------Hh-------------c---------
Confidence 36899999999999999999988 74333 58999999876544210 00 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
++..+++.++++++||+||+|||++.++++++++.+++++ ++++||++.|+..
T Consensus 50 ------------------------g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~---~~lvISi~AGi~i 102 (272)
T PRK12491 50 ------------------------GITITTNNNEVANSADILILSIKPDLYSSVINQIKDQIKN---DVIVVTIAAGKSI 102 (272)
T ss_pred ------------------------CcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcC---CcEEEEeCCCCcH
Confidence 2344567777789999999999999999999999998876 6899999999987
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHHH
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (461)
+ .|++.++.. .+ +++.+||++..++.|...+..- ..++++.+.+.++|+..|...++.++.+
T Consensus 103 ~------------~l~~~l~~~-~~-vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~E~~~--- 165 (272)
T PRK12491 103 K------------STENEFDRK-LK-VIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVVNEKLM--- 165 (272)
T ss_pred H------------HHHHhcCCC-Cc-EEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEEEcHHHh---
Confidence 5 478877632 23 6899999999999986443221 2245678899999999998888877643
Q ss_pred HHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 282 VMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 282 ~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
|++...+|.. + +++...+..+..-+..+|.+.++.
T Consensus 166 ------d~~talsgsg---P----Af~~~~~eal~~a~v~~Gl~~~~A 200 (272)
T PRK12491 166 ------DVVTSISGSS---P----AYVYMFIEAMADAAVLGGMPRKQA 200 (272)
T ss_pred ------hhHHHhccCc---H----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 2222233322 2 555666677777788889987654
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.8e-17 Score=156.03 Aligned_cols=198 Identities=15% Similarity=0.139 Sum_probs=140.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC-chhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP-GRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.|||+|||+|.||++++..|+++ |.... .++.+++|+ ++..+.+ ..
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~-~~~~~-~~i~~~~~~~~~~~~~~--------------------------~~----- 50 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKT-SKEYI-EEIIVSNRSNVEKLDQL--------------------------QA----- 50 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-CCCCc-CeEEEECCCCHHHHHHH--------------------------HH-----
Confidence 47999999999999999999877 52110 136677764 3332210 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.+ ++..++|.+++++++|+||+|||++.++++++++.++++ +++|||+++|++
T Consensus 51 ---~~--------------------~~~~~~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~----~~~vis~~~gi~ 103 (245)
T PRK07634 51 ---RY--------------------NVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLS----NQLVVTVAAGIG 103 (245)
T ss_pred ---Hc--------------------CcEEeCChHHHHhcCCEEEEecCHHHHHHHHHHHHhhcc----CCEEEEECCCCC
Confidence 00 234557788888999999999999999999999998765 469999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (461)
.+ .|++.++.. ...+++|||++.+++.+.+..... ..+++..+.++++|+.-|-..++.++..
T Consensus 104 ~~------------~l~~~~~~~--~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~e~~~-- 167 (245)
T PRK07634 104 PS------------YLEERLPKG--TPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEEV-- 167 (245)
T ss_pred HH------------HHHHHcCCC--CeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEEECHHHc--
Confidence 75 477777532 235689999999999998766543 4567888999999999998887765432
Q ss_pred HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhc
Q 012547 281 EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 330 (461)
Q Consensus 281 e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~ 330 (461)
+.++..+|.. + +++...+..+...+...|.+.+...
T Consensus 168 -------~~~~a~~gs~---p----a~~~~~~~a~~~~~~~~Gl~~~~a~ 203 (245)
T PRK07634 168 -------HQLTAVTGSA---P----AFLYYFAESLIEATKSYGVDEETAK 203 (245)
T ss_pred -------chHHhhhcch---H----HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 2223322222 1 3444455566677888899876643
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-16 Score=152.99 Aligned_cols=197 Identities=20% Similarity=0.147 Sum_probs=148.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||.+|+..|.++ |.+.+ .+|.+.+|++++.+++. .
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~-g~~~~-~~I~v~~~~~e~~~~l~---------~----------------------- 46 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS-GALPP-EEIIVTNRSEEKRAALA---------A----------------------- 46 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc-CCCCc-ceEEEeCCCHHHHHHHH---------H-----------------------
Confidence 47999999999999999999998 74443 68999999987554210 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.+ ++..++|.++++.++|+||+|||++.+++++.++.+ +.+ +++|||+..|+..
T Consensus 47 --~~--------------------g~~~~~~~~~~~~~advv~LavKPq~~~~vl~~l~~-~~~---~~lvISiaAGv~~ 100 (266)
T COG0345 47 --EY--------------------GVVTTTDNQEAVEEADVVFLAVKPQDLEEVLSKLKP-LTK---DKLVISIAAGVSI 100 (266)
T ss_pred --Hc--------------------CCcccCcHHHHHhhCCEEEEEeChHhHHHHHHHhhc-ccC---CCEEEEEeCCCCH
Confidence 01 112367778889999999999999999999999998 554 6899999999987
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEE-EeCChhHHHHHHHHhcCCCceEEecCChHHHH
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANAR-ICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~-~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (461)
+ .+++.++ . .+ +++.+||++..++.|...... ...+++..+.+.++|+.-|..+++.++.+..
T Consensus 101 ~------------~l~~~l~-~-~~-vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~E~~~da- 164 (266)
T COG0345 101 E------------TLERLLG-G-LR-VVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVEESLMDA- 164 (266)
T ss_pred H------------HHHHHcC-C-Cc-eEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEechHHhhH-
Confidence 5 4888887 2 33 689999999999999654432 1235677889999999999999988876532
Q ss_pred HHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhc
Q 012547 282 VMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 330 (461)
Q Consensus 282 ~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~ 330 (461)
++..+|-. + +++...+..|..-+...|.+.++..
T Consensus 165 --------~TaisGSg---P----Ayv~~~iEal~~agv~~Gl~~~~A~ 198 (266)
T COG0345 165 --------VTALSGSG---P----AYVFLFIEALADAGVRLGLPREEAR 198 (266)
T ss_pred --------HHHHhcCC---H----HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 23333322 2 5666667777778888998776543
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=155.47 Aligned_cols=220 Identities=18% Similarity=0.138 Sum_probs=159.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|++|...|..||+. | |+|++++.++++++. +|.+. -|.|.|+++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~-G-----HeVv~vDid~~KV~~---------ln~g~--------~PI~EpgLe----- 52 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL-G-----HEVVCVDIDESKVEL---------LNKGI--------SPIYEPGLE----- 52 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHH---------HhCCC--------CCCcCccHH-----
Confidence 8999999999999999999999 8 999999999998876 44443 477888764
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------hhHHHHHHHHHHHhhccCCCCEE
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------~~~~~vl~~i~~~l~~~~~~~iI 193 (461)
|+|.++... .++.+|+|.+++++++|++|||||. .++++++++|.+++.. .+ +
T Consensus 53 ------~ll~~~~~~-------gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~---~~-v 115 (414)
T COG1004 53 ------ELLKENLAS-------GRLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDG---KA-V 115 (414)
T ss_pred ------HHHHhcccc-------CcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCC---Ce-E
Confidence 344443211 1489999999999999999999975 2789999999998875 33 3
Q ss_pred EEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhcc----CceEEEEeCChh-HHHHHHHHhcCC-
Q 012547 194 ISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARICGAEK-WRKPLAKFLRRP- 267 (461)
Q Consensus 194 Is~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g----~~~~~~~~~~~~-~~~~l~~ll~~~- 267 (461)
| +.|...+- ++...+.+.+.+.... ..+.+.+.|.|.+|...- .|..++++..++ ..+.+.+++...
T Consensus 116 v-V~KSTVPv----Gt~~~v~~~i~~~~~~--~~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~ 188 (414)
T COG1004 116 V-VIKSTVPV----GTTEEVRAKIREENSG--KDFEVASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFL 188 (414)
T ss_pred E-EEcCCCCC----CchHHHHHHHHhhccc--CCceEecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhh
Confidence 3 45554443 1444444444444322 257789999999997753 366777766544 477788887542
Q ss_pred -CceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHH--HHHHHHHHHHHhCCCchhhcc
Q 012547 268 -HFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAH--CTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 268 -g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~--~~~Em~~l~~a~G~~~~t~~g 331 (461)
.-...+-.|+...|+-+..-|. .|.++ -++||..+|+..|+|.+.+..
T Consensus 189 ~~~~p~l~t~~~~AE~IKyaaNa----------------fLAtKIsFiNEia~ice~~g~D~~~V~~ 239 (414)
T COG1004 189 RQDVPILFTDLREAELIKYAANA----------------FLATKISFINEIANICEKVGADVKQVAE 239 (414)
T ss_pred hcCCCEEEecchHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 1223456788889998877766 23222 479999999999999877643
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=152.26 Aligned_cols=198 Identities=14% Similarity=0.098 Sum_probs=140.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh-hhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
||||+|||+|+||++++..|.++ |.+.+ ++|.+|+|+.+. ++. . .. .+ +
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~-g~~~~-~~V~~~~r~~~~~~~~--------l-~~------------~~-~------ 50 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET-EVATP-EEIILYSSSKNEHFNQ--------L-YD------------KY-P------ 50 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCc-ccEEEEeCCcHHHHHH--------H-HH------------Hc-C------
Confidence 37899999999999999999988 63332 689999987532 111 0 00 00 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.+.++.|..++++++|+||+|||++.++++++++.+++.+ ++.|||+++|++
T Consensus 51 -------------------------~~~~~~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~---~~~ivS~~aGi~ 102 (277)
T PRK06928 51 -------------------------TVELADNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTP---DRHVVSIAAGVS 102 (277)
T ss_pred -------------------------CeEEeCCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCC
Confidence 2344567777889999999999999999999999998876 678999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (461)
.+ .|++.++. .+ +++.+||++..++.|...+..- ..+++..+.+.++|+..|...+++++.+.
T Consensus 103 ~~------------~l~~~~~~--~~-vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d- 166 (277)
T PRK06928 103 LD------------DLLEITPG--LQ-VSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIREENMD- 166 (277)
T ss_pred HH------------HHHHHcCC--CC-EEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEEEEchhhCc-
Confidence 75 37777752 23 6899999999999986433221 22466788999999999988888765432
Q ss_pred HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHh-CCCchhh
Q 012547 281 EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLL-AEEPEKL 329 (461)
Q Consensus 281 e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~-G~~~~t~ 329 (461)
++++++.-++ +++...+..+..-+.+. |.+.+..
T Consensus 167 -----------~~tal~gsgP----A~~~~~~~al~~a~~~~ggl~~~~a 201 (277)
T PRK06928 167 -----------IASNLTSSSP----GFIAAIFEEFAEAAVRNSSLSDEEA 201 (277)
T ss_pred -----------eeeeeecCHH----HHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 1222222112 45555666666667777 5666543
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=148.63 Aligned_cols=190 Identities=14% Similarity=0.139 Sum_probs=136.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||++++..|.++ |.+.+ .++++++|+++..
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~-~~~~~-~~i~~~~~~~~~~-------------------------------------- 43 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS-NIIGK-ENIYYHTPSKKNT-------------------------------------- 43 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC-CCCCc-ceEEEECCChhcC--------------------------------------
Confidence 7999999999999999999987 64332 4577777764310
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
......++.++++++|+||+|||+++++++++++.+++.+ ..|||+++|+..+
T Consensus 44 -----------------------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~----~~iIS~~aGi~~~ 96 (260)
T PTZ00431 44 -----------------------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLGS----KLLISICGGLNLK 96 (260)
T ss_pred -----------------------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhccC----CEEEEEeCCccHH
Confidence 1123456667778999999999999999999999998764 5789999999864
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHHHH
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEV 282 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~ 282 (461)
.+++.++. ....++.+||++..++.+...++.. ..+++..+.++++|+..|..+++.++.+.
T Consensus 97 ------------~l~~~~~~--~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d--- 159 (260)
T PTZ00431 97 ------------TLEEMVGV--EAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEIKEKDMD--- 159 (260)
T ss_pred ------------HHHHHcCC--CCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEEEChHHcc---
Confidence 47777653 2236789999999888875333221 22456788999999999999998876432
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhc
Q 012547 283 MGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 330 (461)
Q Consensus 283 ~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~ 330 (461)
++ ++++.-++ +++...+..+..-+.+.|.+.++..
T Consensus 160 ------~~---ta~~gsgP----A~~~~~~~al~~~~v~~Gl~~~~a~ 194 (260)
T PTZ00431 160 ------IA---TAISGCGP----AYVFLFIESLIDAGVKNGLNRDVSK 194 (260)
T ss_pred ------hh---hhhcCCHH----HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 22 22322112 4555566667777888898876543
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-15 Score=147.89 Aligned_cols=199 Identities=16% Similarity=0.191 Sum_probs=139.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
+||++||.|.||..||..|.++ | |+|++|+|++++.... ...
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a-G-----~~v~v~~r~~~ka~~~--------~~~------------------------ 42 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA-G-----HEVTVYNRTPEKAAEL--------LAA------------------------ 42 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC-C-----CEEEEEeCChhhhhHH--------HHH------------------------
Confidence 6899999999999999999999 8 9999999998763210 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH---HHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl---~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+.....++.++++.+|+||.++|. .++++++ ..+.+.+++ ++++|.++ .
T Consensus 43 ----------------------~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~---G~i~IDmS-T 96 (286)
T COG2084 43 ----------------------AGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKP---GAIVIDMS-T 96 (286)
T ss_pred ----------------------cCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCC---CCEEEECC-C
Confidence 0234556778889999999999985 6899988 456666676 68888766 5
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEE-EEeCChhHHHHHHHHhcCCCceEEecCChH
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANA-RICGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~-~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (461)
++++ ..+.+.+.+++ .|.......|..|+--+. .| +.+ +++++++..++++.+|+.-+-+++...+.-
T Consensus 97 isp~-----~a~~~a~~~~~-~G~~~lDAPVsGg~~~A~---~G--tLtimvGG~~~~f~r~~pvl~~~g~~i~~~G~~G 165 (286)
T COG2084 97 ISPE-----TARELAAALAA-KGLEFLDAPVSGGVPGAA---AG--TLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVG 165 (286)
T ss_pred CCHH-----HHHHHHHHHHh-cCCcEEecCccCCchhhh---hC--ceEEEeCCCHHHHHHHHHHHHHhcCceEEECCCC
Confidence 6665 23334444433 232111112333343332 33 333 467888999999999999998888887772
Q ss_pred HHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 279 THEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 279 gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
.-+..+++.|++ .+....++.|...++++.|.+++.+..
T Consensus 166 ~G~~~Kl~nn~l--------------~~~~~~a~aEAl~la~k~Gld~~~~~~ 204 (286)
T COG2084 166 AGQAAKLANNIL--------------LAGNIAALAEALALAEKAGLDPDVVLE 204 (286)
T ss_pred chHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 234455555552 234446889999999999999988865
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-14 Score=141.41 Aligned_cols=199 Identities=15% Similarity=0.153 Sum_probs=137.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch-hhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.|||+|||+|+||++|+..|.++ |.+.+ ++|.+|+|+.+ .++.+. . .
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-g~~~~-~~v~v~~r~~~~~~~~l~---------~---------------~------ 50 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-NVVKG-EQITVSNRSNETRLQELH---------Q---------------K------ 50 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCCHHHHHHHH---------H---------------h------
Confidence 37999999999999999999988 63333 78999998753 222100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.++..+.++.+++++||+||+|||++.+.++++++.+.+.+ +++||++++|+.
T Consensus 51 ------------------------~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~---~~liIs~~aGi~ 103 (279)
T PRK07679 51 ------------------------YGVKGTHNKKELLTDANILFLAMKPKDVAEALIPFKEYIHN---NQLIISLLAGVS 103 (279)
T ss_pred ------------------------cCceEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEECCCCC
Confidence 02345677888889999999999999999999999988776 689999999997
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeC--ChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
.+ .+++.++.. .+ ++..+||++..+..+.. .+..+. +++..+.++++|+.-|-.+++.++.+.
T Consensus 104 ~~------------~l~~~~~~~-~~-v~r~mPn~~~~~~~~~t-~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~~ 168 (279)
T PRK07679 104 TH------------SIRNLLQKD-VP-IIRAMPNTSAAILKSAT-AISPSKHATAEHIQTAKALFETIGLVSVVEEEDMH 168 (279)
T ss_pred HH------------HHHHHcCCC-Ce-EEEECCCHHHHHhcccE-EEeeCCCCCHHHHHHHHHHHHhCCcEEEeCHHHhh
Confidence 65 356655421 23 67899999988777643 222222 356778999999999987777765321
Q ss_pred HHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 280 HEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
..+|++..++. ++...+.-+...+...|.+++....
T Consensus 169 ------------~~~a~~Gsgpa----~~~~~~eal~e~~~~~Gl~~~~a~~ 204 (279)
T PRK07679 169 ------------AVTALSGSGPA----YIYYVVEAMEKAAKKIGLKEDVAKS 204 (279)
T ss_pred ------------hHHHhhcCHHH----HHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 12233322222 2222333334458889998876644
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-14 Score=141.68 Aligned_cols=161 Identities=12% Similarity=0.204 Sum_probs=120.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||++++..|.++ |.+.+ ++|.+|+|+++.++.+. . .+ +
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~-g~~~~-~~v~v~~r~~~~~~~~~---------~------------~~-~-------- 48 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES-GAVKP-SQLTITNRTPAKAYHIK---------E------------RY-P-------- 48 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCHHHHHHHH---------H------------Hc-C--------
Confidence 6899999999999999999988 73322 47999999976543210 0 00 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
++..+.+.++++.++|+||+|||+++++++++++.+++.+ +++||++++|+...
T Consensus 49 -----------------------g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~~l~~~l~~---~~~iis~~ag~~~~ 102 (273)
T PRK07680 49 -----------------------GIHVAKTIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTD---EHCLVSITSPISVE 102 (273)
T ss_pred -----------------------CeEEECCHHHHHHhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCCHH
Confidence 2445667778789999999999999999999999998876 67999999998543
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
.+++.++. . .++..||.+.....|.... ..+ .+++..+.+.++|+..|..+++.+|+..
T Consensus 103 ------------~L~~~~~~---~-~~r~~p~~~~~~~~G~t~~-~~g~~~~~~~~~~~~~ll~~~G~~~~i~e~~~~ 163 (273)
T PRK07680 103 ------------QLETLVPC---Q-VARIIPSITNRALSGASLF-TFGSRCSEEDQQKLERLFSNISTPLVIEEDITR 163 (273)
T ss_pred ------------HHHHHcCC---C-EEEECCChHHHHhhccEEE-eeCCCCCHHHHHHHHHHHHcCCCEEEEChHhcc
Confidence 46666652 2 4678899887666664322 233 2456678999999999988888887543
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-14 Score=138.70 Aligned_cols=197 Identities=14% Similarity=0.086 Sum_probs=133.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEE-ecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~-~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|||+|+||++|+..|.++ |+..+ .+|++| +|++++.+.+ ..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~-g~~~~-~~i~v~~~r~~~~~~~~--------------------------~~------ 46 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS-GVVPP-SRISTADDSNPARRDVF--------------------------QS------ 46 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCCc-ceEEEEeCCCHHHHHHH--------------------------HH------
Confidence 7999999999999999999998 73222 388888 8887644320 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.++..+++++++++++|+||+|+|+++++++++++.+.+.+ +++|||+++|+..
T Consensus 47 -----------------------~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~---~~~iIs~~~g~~~ 100 (266)
T PLN02688 47 -----------------------LGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSK---DKLLVSVAAGITL 100 (266)
T ss_pred -----------------------cCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHHHHhhcCC---CCEEEEecCCCcH
Confidence 02345667778888999999999999999999999888776 6889999999865
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHHH
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (461)
+ .+.+.++. .+ .+..+|+.+..++.+...++.. ..+++..+.++++|+.-|-..+..++...
T Consensus 101 ~------------~l~~~~~~--~~-vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~e~~~d-- 163 (266)
T PLN02688 101 A------------DLQEWAGG--RR-VVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDEKLLD-- 163 (266)
T ss_pred H------------HHHHHcCC--CC-EEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHcc--
Confidence 4 35566653 23 4568999998877765333222 23567789999999998874444443221
Q ss_pred HHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 282 VMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 282 ~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
.+++++..++- -.+.+..++.|. +.+.|.+++.+..
T Consensus 164 ----------~~~~~~g~g~a-~~~~~~~a~~ea---~~~~Gl~~~~a~~ 199 (266)
T PLN02688 164 ----------AVTGLSGSGPA-YIFLAIEALADG---GVAAGLPRDVALS 199 (266)
T ss_pred ----------hhHhhhcCHHH-HHHHHHHHHHHH---HHHcCCCHHHHHH
Confidence 11222211111 112334455554 8888999877643
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.6e-14 Score=137.29 Aligned_cols=194 Identities=18% Similarity=0.163 Sum_probs=133.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||++++..|.++ |. .+ ++|.+|+|+++..+.+.. .|
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~-g~-~~-~~v~v~~r~~~~~~~~~~---------------------~~--------- 48 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS-GV-PA-KDIIVSDPSPEKRAALAE---------------------EY--------- 48 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC-CC-Cc-ceEEEEcCCHHHHHHHHH---------------------hc---------
Confidence 58999999999999999999988 62 21 589999999765443110 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
++..+++.++++.++|+||+|||++.++++++++.+++ + +.|||+++|+..
T Consensus 49 ------------------------g~~~~~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~-~----~~vvs~~~gi~~ 99 (267)
T PRK11880 49 ------------------------GVRAATDNQEAAQEADVVVLAVKPQVMEEVLSELKGQL-D----KLVVSIAAGVTL 99 (267)
T ss_pred ------------------------CCeecCChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhc-C----CEEEEecCCCCH
Confidence 12345667777889999999999999999999999876 3 589999999864
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEec-CChHH
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN-GDLVT 279 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s-~Di~g 279 (461)
+ .+++.++.. .+ .+...|+++..+..+.. .+..+ .+++..+.++++|+..|..+++. ++..
T Consensus 100 ~------------~l~~~~~~~-~~-iv~~~P~~p~~~~~~~~-~i~~~~~~~~~~~~~v~~l~~~lG~~~~~~~e~~~- 163 (267)
T PRK11880 100 A------------RLERLLGAD-LP-VVRAMPNTPALVGAGMT-ALTANALVSAEDRELVENLLSAFGKVVWVDDEKQM- 163 (267)
T ss_pred H------------HHHHhcCCC-Cc-EEEecCCchHHHcCceE-EEecCCCCCHHHHHHHHHHHHhCCeEEEECChHhc-
Confidence 3 466666521 23 45689999987777633 22333 35677889999999999777665 3321
Q ss_pred HHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 280 HEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
+.++..+|. ++ +++...+..+...+...|.+++..
T Consensus 164 --------d~~~a~~~~---~p----a~~~~~~~~~~~~~~~~Gl~~~~a 198 (267)
T PRK11880 164 --------DAVTAVSGS---GP----AYVFLFIEALADAGVKLGLPREQA 198 (267)
T ss_pred --------chHHHHhcC---hH----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 221212221 12 333345566667778888877654
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=137.45 Aligned_cols=255 Identities=16% Similarity=0.172 Sum_probs=153.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|.||.++|..|++. | ++|.+|+|+++..+.+. .
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~-g-----~~v~~~d~~~~~~~~~~---------~----------------------- 43 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVYDRNPEAVAEVI---------A----------------------- 43 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHH---------H-----------------------
Confidence 47999999999999999999998 8 89999999986544210 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH---HHHHHHhhccCCCCEEEEEee
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl---~~i~~~l~~~~~~~iIIs~tk 198 (461)
.+...+++++++++++|+||+|+|. ..++.++ +.+.+.+.+ +++++.++.
T Consensus 44 -----------------------~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iiid~st 97 (296)
T PRK11559 44 -----------------------AGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVVIDMSS 97 (296)
T ss_pred -----------------------CCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCC---CcEEEECCC
Confidence 0233456778888999999999994 5667776 456676665 677776653
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhh--hccCceEEEEeCChhHHHHHHHHhcCCCceEEecCC
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev--~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
+.+.. ++.+.+.+.... +.++..|-+..+. ..+... ++++++++..+.++.+|..-+.++....+
T Consensus 98 -~~~~~---------~~~l~~~~~~~g--~~~~d~pv~g~~~~a~~g~l~-i~~gg~~~~~~~~~~~l~~~~~~~~~~g~ 164 (296)
T PRK11559 98 -IAPLA---------SREIAAALKAKG--IEMLDAPVSGGEPKAIDGTLS-VMVGGDKAIFDKYYDLMKAMAGSVVHTGD 164 (296)
T ss_pred -CCHHH---------HHHHHHHHHHcC--CcEEEcCCCCCHHHHhhCcEE-EEECCCHHHHHHHHHHHHHhcCCeEEeCC
Confidence 33321 122333332111 1123334222111 123222 34567778888899999877766665555
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC---hhhhhhhhccccchhHHHHHH
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP---LLADTYVTLLKGRNAWYGQEL 353 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~---glgDl~~T~~~sRN~~~G~~l 353 (461)
.-..+..+++-|.+- +.....++|+..+++..|.+++.+... +.+..... ..+ +..+
T Consensus 165 ~g~a~~~Kl~~n~~~--------------~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~--~~~----~~~~ 224 (296)
T PRK11559 165 IGAGNVTKLANQVIV--------------ALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVL--DAK----APMV 224 (296)
T ss_pred cCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHH--Hhh----chHh
Confidence 433455555555421 222357899999999999998876431 12110000 000 0011
Q ss_pred hcCCChhhHhhhhcCCCccch-HHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHH
Q 012547 354 AKGRLTLDLGDSIKGKGMIQG-ISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKIL 417 (461)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~vEG-~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il 417 (461)
.++. +...-+++- ......+.+++++.|+ + +|+.+.+++++
T Consensus 225 ~~~d--------~~~~f~~~~~~KDl~~~~~~a~~~g~--------------~-~p~~~~~~~~~ 266 (296)
T PRK11559 225 MDRN--------FKPGFRIDLHIKDLANALDTSHGVGA--------------P-LPLTAAVMEMM 266 (296)
T ss_pred hcCC--------CCCCcchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHH
Confidence 1110 000112322 2335678999999995 6 79999999877
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=138.23 Aligned_cols=199 Identities=13% Similarity=0.091 Sum_probs=128.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
+||+|||+|.||++||..|+++ | ++|++|+|++++++.+...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~-G-----~~V~v~d~~~~~~~~~~~~-------------------------------- 43 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQ-G-----HQLQVFDVNPQAVDALVDK-------------------------------- 43 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHHc--------------------------------
Confidence 5899999999999999999999 8 8999999998765431100
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHH---HHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE---EISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~---~i~~~l~~~~~~~iIIs~tkG 199 (461)
....+.++.++++++|+||+|+|+. .+++++. .+.+.+++ ++++|.++++
T Consensus 44 -----------------------g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~---g~lvid~sT~ 97 (296)
T PRK15461 44 -----------------------GATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSR---DALVIDMSTI 97 (296)
T ss_pred -----------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCC---CCEEEECCCC
Confidence 1233456778889999999999987 5888874 34455554 6777777755
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
-... ...+.+.+.+ .|.......+..||..+. .|..+ ++++++++..++++.+|+.-+-+++...++-.
T Consensus 98 ~p~~------~~~l~~~l~~-~g~~~ldapV~g~~~~a~---~g~l~-~~~gg~~~~~~~~~p~l~~~g~~~~~~g~~G~ 166 (296)
T PRK15461 98 HPLQ------TDKLIADMQA-KGFSMMDVPVGRTSDNAI---TGTLL-LLAGGTAEQVERATPILMAMGNELINAGGPGM 166 (296)
T ss_pred CHHH------HHHHHHHHHH-cCCcEEEccCCCCHHHHH---hCcEE-EEECCCHHHHHHHHHHHHHHcCCeEeeCCCCH
Confidence 4332 1112222222 121111112333333332 44332 34677888888999999887777777776532
Q ss_pred HHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 280 HEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
-...+++-|.+ ......++.|...++++.|.+++.+..
T Consensus 167 g~~~Kl~~N~~--------------~~~~~~~~~Ea~~l~~~~Gld~~~~~~ 204 (296)
T PRK15461 167 GIRVKLINNYM--------------SIALNALSAEAAVLCEALGLSFDVALK 204 (296)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 33444444442 223335679999999999999987653
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-13 Score=135.28 Aligned_cols=196 Identities=13% Similarity=0.123 Sum_probs=125.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (461)
||+|||+|.||.++|..|+++ | ++|++|+|+++.++.+. ..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-G-----~~V~~~dr~~~~~~~~~---------~~------------------------ 41 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-G-----YQLHVTTIGPEVADELL---------AA------------------------ 41 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHH---------HC------------------------
Confidence 599999999999999999999 8 99999999987654311 00
Q ss_pred ccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH---HHHHHHhhccCCCCEEEEEeecC
Q 012547 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl---~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+....+++.+++++||+||+|+|.. .+++++ +.+.+.+.+ ++++|.++. +
T Consensus 42 ----------------------g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iivd~st-~ 95 (291)
T TIGR01505 42 ----------------------GAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKP---GKTLVDMSS-I 95 (291)
T ss_pred ----------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCC---CCEEEECCC-C
Confidence 1122356778889999999999974 666665 335555555 677776553 3
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhh--ccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~--~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (461)
.+.. . +.+.+.+.... +.++..|-+..+.. .+.. .++++++++..+.++++|..-+.+++...+.-
T Consensus 96 ~~~~-----~----~~l~~~l~~~g--~~~~~~pv~g~~~~a~~g~l-~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g 163 (291)
T TIGR01505 96 SPIE-----S----KRFAKAVKEKG--IDYLDAPVSGGEIGAIEGTL-SIMVGGDQAVFDRVKPLFEALGKNIVLVGGNG 163 (291)
T ss_pred CHHH-----H----HHHHHHHHHcC--CCEEecCCCCCHHHHhcCCE-EEEecCCHHHHHHHHHHHHHhcCCeEEeCCCC
Confidence 3321 1 22333232111 12344554433322 2322 23457777888899999988887666555432
Q ss_pred HHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 279 THEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 279 gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
..+..+++-|. ..+....+++|+..++++.|.+++++..
T Consensus 164 ~a~~~Kl~~n~--------------~~~~~~~~~~Ea~~l~~~~Gid~~~~~~ 202 (291)
T TIGR01505 164 DGQTCKVANQI--------------IVALNIEAVSEALVFASKAGVDPVRVRQ 202 (291)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 23344444433 2233446799999999999999988764
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-13 Score=136.08 Aligned_cols=261 Identities=16% Similarity=0.100 Sum_probs=158.9
Q ss_pred EECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCCccc
Q 012547 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLH 127 (461)
Q Consensus 48 IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~ 127 (461)
|||.|.||.+||..|+++ | ++|++|+|+++.++.+..
T Consensus 1 ~IGlG~mG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~------------------------------------- 37 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-G-----HPVRVFDLFPDAVEEAVA------------------------------------- 37 (288)
T ss_pred CCcccHhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-------------------------------------
Confidence 689999999999999999 8 999999999876543110
Q ss_pred hhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH---HHHHHHhhccCCCCEEEEEeecCccc
Q 012547 128 ADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl---~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.+...++++.++++++|+||+|||+ .++++++ +.+.+.+.+ ++++|.++ ++.+.
T Consensus 38 ------------------~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~---g~~vid~s-t~~p~ 95 (288)
T TIGR01692 38 ------------------AGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAK---GSLLIDCS-TIDPD 95 (288)
T ss_pred ------------------cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCC---CCEEEECC-CCCHH
Confidence 0233456788889999999999997 6788888 678777766 67888777 77775
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHHHHHH
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVM 283 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~ 283 (461)
+...+++.+.+ .|.......+..||..+. .|... .+++++++..++++.+|+..+-+++...+.-.-+..
T Consensus 96 -----~~~~~~~~~~~-~g~~~vdaPv~Gg~~~a~---~g~l~-~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~ 165 (288)
T TIGR01692 96 -----SARKLAELAAA-HGAVFMDAPVSGGVGGAR---AGTLT-FMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAA 165 (288)
T ss_pred -----HHHHHHHHHHH-cCCcEEECCCCCCHHHHh---hCcEE-EEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHHHH
Confidence 23344454443 232111111233343332 33322 245777778888999998777666666554334445
Q ss_pred HHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhccccchhHHHHHHhcCCChh-hH
Q 012547 284 GGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTL-DL 362 (461)
Q Consensus 284 galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~G~~l~~g~~~~-~~ 362 (461)
+++-|.+ ......++.|...++++.|.+++.+.. ++.+. .+++..+-.......... .+
T Consensus 166 Kl~~n~~--------------~~~~~~~~~Ea~~la~~~Gld~~~~~~-----~~~~~-~~~s~~~~~~~~~~~~~~~~~ 225 (288)
T TIGR01692 166 KICNNML--------------LGISMIGTAEAMALGEKLGLDPKVLFE-----IANTS-SGRCWSSDTYNPVPGVMPQAP 225 (288)
T ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHhcC-CccCcHHHHhCCCcccccccc
Confidence 5555541 122234789999999999999988753 33222 111111110000000000 00
Q ss_pred -hhhhcCCC-ccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 363 -GDSIKGKG-MIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 363 -~~~~~~~~-~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
...+...- .--..+.++.+.+++++.|+ + +|+.+.+.+++.
T Consensus 226 ~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~--------------~-~p~~~~~~~~~~ 268 (288)
T TIGR01692 226 ASNGYQGGFGTALMLKDLGLAQDAAKSAGA--------------P-TPLGALARQLYS 268 (288)
T ss_pred ccCCCCCCcchHHHHhhHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 00011111 12334566688999999995 6 799888887763
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-12 Score=129.35 Aligned_cols=198 Identities=13% Similarity=0.093 Sum_probs=128.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||.|.||.++|..|+++ | ++|.+|+|++++++.+. .
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~~---------~------------------------ 41 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED-G-----HEVVGYDVNQEAVDVAG---------K------------------------ 41 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHH---------H------------------------
Confidence 6899999999999999999998 8 89999999987554311 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC---CCEEEEcCCch-hHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~---aDiIIiaVps~-~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+...+.++++++++ +|+||+|+|.. .++++++.+.+.+++ ++++|.++.+
T Consensus 42 ----------------------~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~---g~ivid~st~ 96 (299)
T PRK12490 42 ----------------------LGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDLYPLLSP---GDIVVDGGNS 96 (299)
T ss_pred ----------------------CCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHHhccCCC---CCEEEECCCC
Confidence 022345667776655 69999999987 999999998888776 6788877643
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCc---eEEecCC
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDNGD 276 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~---~v~~s~D 276 (461)
.+.. ...+.+.+.+ .+.......+..||.-+. .|. .++++++++..+.++.+|..-+- +++...+
T Consensus 97 -~~~~-----~~~~~~~~~~-~g~~~vdapV~G~~~~a~---~g~--~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~ 164 (299)
T PRK12490 97 -RYKD-----DLRRAEELAE-RGIHYVDCGTSGGVWGLR---NGY--CLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGP 164 (299)
T ss_pred -Cchh-----HHHHHHHHHH-cCCeEEeCCCCCCHHHHh---cCC--eEEecCCHHHHHHHHHHHHHhcCcCCcEEEECC
Confidence 3321 1222222222 121111112233333222 343 34678888888888888887664 4555666
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhC--CCchhhcc
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLA--EEPEKLAG 331 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G--~~~~t~~g 331 (461)
+-.-...+++-|. -......++.|...++++.| .+++.+..
T Consensus 165 ~g~a~~~Kl~~n~--------------~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~ 207 (299)
T PRK12490 165 VGSGHFLKMVHNG--------------IEYGMMQAYAEGLELLDKSDFDFDVEDVAR 207 (299)
T ss_pred cCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcccCCCHHHHHH
Confidence 4323334444444 22334468899999999998 78877654
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-12 Score=136.46 Aligned_cols=283 Identities=10% Similarity=0.031 Sum_probs=172.7
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
...+|||+|||.|+||..+|..|++. ++|+.|++++++++.++ .+. .+.+.+.+.
T Consensus 3 ~~~~mkI~vIGlGyvGlpmA~~la~~-------~~V~g~D~~~~~ve~l~---------~G~--------~~~~e~~~~- 57 (425)
T PRK15182 3 GIDEVKIAIIGLGYVGLPLAVEFGKS-------RQVVGFDVNKKRILELK---------NGV--------DVNLETTEE- 57 (425)
T ss_pred CCCCCeEEEECcCcchHHHHHHHhcC-------CEEEEEeCCHHHHHHHH---------CcC--------CCCCCCCHH-
Confidence 34559999999999999999998864 89999999999887643 221 122222221
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch----------hHHHHHHHHHHHhhccCC
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERIT 189 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~----------~~~~vl~~i~~~l~~~~~ 189 (461)
++... ..+.++++.+ ++++||++|+|||.. ++....+.|.+++++
T Consensus 58 ----------~l~~~-----------g~l~~t~~~~-~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~--- 112 (425)
T PRK15182 58 ----------ELREA-----------RYLKFTSEIE-KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNR--- 112 (425)
T ss_pred ----------HHHhh-----------CCeeEEeCHH-HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCC---
Confidence 12111 1456777775 589999999999853 566666788888876
Q ss_pred CCEEEEEeecCccccccccccCCHHHHHHhHhCCC-CCcEEEEeCcchhHhhhcc----CceEEEEeCChhHHHHHHHHh
Q 012547 190 VPVIISLAKGVEAELEAVPRIITPTQMINRATGVP-IENILYLGGPNIASEIYNK----EYANARICGAEKWRKPLAKFL 264 (461)
Q Consensus 190 ~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~-~~~v~vlsGPn~a~ev~~g----~~~~~~~~~~~~~~~~l~~ll 264 (461)
+++|| ....+.+.+ +.......+.+..|.. ...+.+..-|.+..+.... .+..++.+.+++..+.+..++
T Consensus 113 g~lVI-~~STv~pgt----t~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly 187 (425)
T PRK15182 113 GDIVV-YESTVYPGC----TEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSGSTAQIAELIDEVY 187 (425)
T ss_pred CCEEE-EecCCCCcc----hHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEECCCHHHHHHHHHHH
Confidence 56555 444666652 1112223333322321 1234566778877665432 233344555666667777777
Q ss_pred cCCC-ceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhccc
Q 012547 265 RRPH-FTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLK 343 (461)
Q Consensus 265 ~~~g-~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~~ 343 (461)
..-. ...+...|+...|+.+.+-|.+- +.--..++|+..+|+++|.|...+... .-+...
T Consensus 188 ~~~~~~~~~~~~~~~~AE~~Kl~~N~~~--------------av~Ia~~NE~a~lae~~GiD~~~v~~a-----~~~~~~ 248 (425)
T PRK15182 188 QQIISAGTYKAESIKVAEAAKVIENTQR--------------DLNIALVNELAIIFNRLNIDTEAVLRA-----AGSKWN 248 (425)
T ss_pred HHHhhcCcEEecCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhCcCHHHHHHH-----hcCCCC
Confidence 6532 22456777888899988887731 222347899999999999998876542 111111
Q ss_pred cchhHHHHHHhcCCCh-hhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCC
Q 012547 344 GRNAWYGQELAKGRLT-LDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRES 422 (461)
Q Consensus 344 sRN~~~G~~l~~g~~~-~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~ 422 (461)
-.++..|. +| |..+ .| ..++...++++|. + .++++++.++ ++ ..
T Consensus 249 ~~~~~pG~-vG-G~ClpkD----------------~~~L~~~a~~~g~--------------~-~~l~~~a~~i-N~-~~ 293 (425)
T PRK15182 249 FLPFRPGL-VG-GHCIGVD----------------PYYLTHKSQGIGY--------------Y-PEIILAGRRL-ND-NM 293 (425)
T ss_pred cccCCCCc-cc-ccccccc----------------HHHHHHHHHhcCC--------------C-cHHHHHHHHH-HH-HH
Confidence 11223333 22 3322 11 1257778888884 4 6888888877 33 33
Q ss_pred HHHHHHHHH
Q 012547 423 PIQAILEAL 431 (461)
Q Consensus 423 ~~~~~~~~l 431 (461)
|...+.++.
T Consensus 294 ~~~v~~~~~ 302 (425)
T PRK15182 294 GNYVSEQLI 302 (425)
T ss_pred HHHHHHHHH
Confidence 455554443
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-13 Score=128.68 Aligned_cols=176 Identities=19% Similarity=0.202 Sum_probs=119.1
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+||| +|+||+++|..|+++ | ++|.+|+|++++++.++.+.+ .++...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~-G-----~~V~v~~r~~~~~~~l~~~~~------------------~~~~~~----- 51 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA-G-----NKIIIGSRDLEKAEEAAAKAL------------------EELGHG----- 51 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC-C-----CEEEEEEcCHHHHHHHHHHHH------------------hhcccc-----
Confidence 7999997 899999999999999 8 999999999877654322110 011100
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
|+. ..+.. ++..++++++|+||+|||+++++++++++.+.+. +++||+++||++.
T Consensus 52 ------------g~~--------~~~~~-~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~----~~vvI~~~ngi~~ 106 (219)
T TIGR01915 52 ------------GSD--------IKVTG-ADNAEAAKRADVVILAVPWDHVLKTLESLRDELS----GKLVISPVVPLAS 106 (219)
T ss_pred ------------CCC--------ceEEE-eChHHHHhcCCEEEEECCHHHHHHHHHHHHHhcc----CCEEEEeccCcee
Confidence 000 01222 3556778999999999999999999999987765 4789999999986
Q ss_pred ccc-cc----cccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCc----eEEEEeCC-hhHHHHHHHHhcCC-CceE
Q 012547 203 ELE-AV----PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY----ANARICGA-EKWRKPLAKFLRRP-HFTV 271 (461)
Q Consensus 203 ~~~-~~----~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~----~~~~~~~~-~~~~~~l~~ll~~~-g~~v 271 (461)
... .. ......++.+++.++. ..+ ++...|+++.++..+.. ....++++ ++..+.+.++.... ||..
T Consensus 107 ~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~-VVka~~~~~a~~~~~~~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~ 184 (219)
T TIGR01915 107 DGGKGARYLPPEEGSAAEQAAALLPE-TSR-VVAAFHNLSAVLLQDVDDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRA 184 (219)
T ss_pred cCCCCceecCCCCCcHHHHHHHhCCC-CCe-EeeccccCCHHHhcCCCCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCc
Confidence 210 00 1123446888888862 123 56778888776554421 11234554 56677888999887 9987
Q ss_pred EecC
Q 012547 272 WDNG 275 (461)
Q Consensus 272 ~~s~ 275 (461)
+...
T Consensus 185 vd~G 188 (219)
T TIGR01915 185 LDAG 188 (219)
T ss_pred ccCC
Confidence 5443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=135.85 Aligned_cols=212 Identities=14% Similarity=0.109 Sum_probs=139.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.||..+|..++ . | |+|++|++++++++.+++ +. .+.+.+++.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~-G-----~~VigvD~d~~kv~~l~~---------g~--------~~~~e~~l~----- 51 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q-N-----HEVVALDILPSRVAMLND---------RI--------SPIVDKEIQ----- 51 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h-C-----CcEEEEECCHHHHHHHHc---------CC--------CCCCCcCHH-----
Confidence 69999999999999998888 5 6 999999999998876432 21 122333321
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-----------hHHHHHHHHHHHhhccCCCCE
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVPV 192 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-----------~~~~vl~~i~~~l~~~~~~~i 192 (461)
+++.++ ...+..+++.++++.+||+||+|||.. +++++++.+.+ +++ +++
T Consensus 52 ------~~l~~~---------~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~---g~l 112 (388)
T PRK15057 52 ------QFLQSD---------KIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INP---YAV 112 (388)
T ss_pred ------HHHHhC---------CCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCC---CCE
Confidence 111110 014566777888889999999999954 77888888877 555 565
Q ss_pred EEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhc----cCceEEEEeCChhHHHHHHHHhcCCC
Q 012547 193 IISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRPH 268 (461)
Q Consensus 193 IIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~----g~~~~~~~~~~~~~~~~l~~ll~~~g 268 (461)
|| ....+.+.+ . +.+.+.+. ...+.++|.++.+... ..+..++++++++..+.+.++|....
T Consensus 113 VV-~~STv~pgt-----t----~~l~~~~~----~~~v~~~PE~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~ 178 (388)
T PRK15057 113 MV-IKSTVPVGF-----T----AAMHKKYR----TENIIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGA 178 (388)
T ss_pred EE-EeeecCCch-----H----HHHHHHhh----cCcEEECcccccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhh
Confidence 54 444566552 1 33333332 1134578999876543 12445566766677777777774321
Q ss_pred c--eEE-ecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 269 F--TVW-DNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 269 ~--~v~-~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
+ .+. +..|+...|+.+.+-|.+ + +.--..++|+..+|+++|.|...+..
T Consensus 179 ~~~~~~~~~~~~~~AE~~Kl~~N~~-------------~-a~~Ia~~NE~a~lae~~GiD~~eV~~ 230 (388)
T PRK15057 179 IKQNIPTLFTDSTEAEAIKLFANTY-------------L-AMRVAYFNELDSYAESLGLNTRQIIE 230 (388)
T ss_pred hcCCCceeeCCHHHHHHHHHHHHHH-------------H-HHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 1 222 467888899999888872 2 22234679999999999998776543
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=137.25 Aligned_cols=218 Identities=14% Similarity=-0.000 Sum_probs=142.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|.||..+|..|++. | ++|+.|++++++++.++ .+. .+.+.+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~-G-----~~V~~~D~~~~~v~~l~---------~g~--------~~~~e~~l~---- 55 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR-Q-----KQVIGVDINQHAVDTIN---------RGE--------IHIVEPDLD---- 55 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHH---------CCC--------CCcCCCCHH----
Confidence 47999999999999999999999 8 99999999998877533 221 122223221
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------hhHHHHHHHHHHHhhccCCCCE
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPV 192 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------~~~~~vl~~i~~~l~~~~~~~i 192 (461)
+++.+.... ..+.++++. ++||+||+|||. .++.++++.+.+++++ +++
T Consensus 56 -------~~l~~~~~~-------g~l~~~~~~----~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~---g~i 114 (415)
T PRK11064 56 -------MVVKTAVEG-------GYLRATTTP----EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKK---GDL 114 (415)
T ss_pred -------HHHHHHhhc-------Cceeeeccc----ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCC---CCE
Confidence 111110000 134555543 479999999997 5888999999999887 666
Q ss_pred EEEEeecCccccccccccCCHHHHHHhHhCC--------CCCcEEEEeCcchhHhhhc----cCceEEEEeC-ChhHHHH
Q 012547 193 IISLAKGVEAELEAVPRIITPTQMINRATGV--------PIENILYLGGPNIASEIYN----KEYANARICG-AEKWRKP 259 (461)
Q Consensus 193 IIs~tkGi~~~~~~~~~~~~~se~i~~~lg~--------~~~~v~vlsGPn~a~ev~~----g~~~~~~~~~-~~~~~~~ 259 (461)
|| ....+.+. +...+...+.+.... ....+.+...|.+..+... +.+..+ +++ +++..+.
T Consensus 115 VI-~~STv~pg-----tt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~v-vgG~~~~~~~~ 187 (415)
T PRK11064 115 VI-LESTSPVG-----ATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRV-IGGMTPVCSAR 187 (415)
T ss_pred EE-EeCCCCCC-----HHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEE-EEeCCHHHHHH
Confidence 55 44466655 233333334332110 0123556788877654322 223343 454 7777888
Q ss_pred HHHHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 260 LAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 260 l~~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
++++|+.-+-.+....++...|+.+.+-|.+ + +.-...++|+..+|+.+|.|+..+
T Consensus 188 ~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~-------------~-a~~ia~~nE~~~lae~~GiD~~~v 243 (415)
T PRK11064 188 ASELYKIFLEGECVVTNSRTAEMCKLTENSF-------------R-DVNIAFANELSLICADQGINVWEL 243 (415)
T ss_pred HHHHHHHhcCCCeeeCCHHHHHHHHHHHHHH-------------H-HHHHHHHHHHHHHHHHhCCCHHHH
Confidence 8888886654555667888889998888772 1 222347899999999999987655
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-11 Score=124.35 Aligned_cols=201 Identities=12% Similarity=0.075 Sum_probs=123.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.||++||..|+++ | ++|.+|+|++++++.+.+. + ..
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~-g-----~~V~~~dr~~~~~~~l~~~--------g-------------~~-------- 45 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR-G-----HDCVGYDHDQDAVKAMKED--------R-------------TT-------- 45 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHc--------C-------------Cc--------
Confidence 6899999999999999999999 8 9999999998766542110 0 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
......++.+.+..+|+||++||+..++++++++.+++.+ ++++|.++++....
T Consensus 46 -----------------------~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~~~l~~---g~ivid~st~~~~~ 99 (298)
T TIGR00872 46 -----------------------GVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELAPTLEK---GDIVIDGGNSYYKD 99 (298)
T ss_pred -----------------------ccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHHhhCCC---CCEEEECCCCCccc
Confidence 0000112333456789999999999999999999999877 68899988776544
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCc---eEEecCChHHH
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDNGDLVTH 280 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~---~v~~s~Di~gv 280 (461)
+ ....+.+.+ .|.......+..||.-+. .| + .++++++++..+.++.+|+..+- .+++..+.-.-
T Consensus 100 t------~~~~~~~~~-~g~~~vda~vsGg~~~a~---~G-~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~ 167 (298)
T TIGR00872 100 S------LRRYKLLKE-KGIHLLDCGTSGGVWGRE---RG-Y-CFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSG 167 (298)
T ss_pred H------HHHHHHHHh-cCCeEEecCCCCCHHHHh---cC-C-eeeeCCCHHHHHHHHHHHHHhcCcCCCEEEECCccHh
Confidence 2 111111221 121111112222333222 33 3 34577888888888888775442 23444443222
Q ss_pred HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhC--CCchhhcc
Q 012547 281 EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLA--EEPEKLAG 331 (461)
Q Consensus 281 e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G--~~~~t~~g 331 (461)
...+.+.|.+. ..+..++.|...++++.| .+++++..
T Consensus 168 ~~~K~~~n~l~--------------~~~~~~~aE~~~l~~~~g~~ld~~~~~~ 206 (298)
T TIGR00872 168 HFVKMVHNGIE--------------YGMMAAIAEGFEILRNSQFDFDIPEVAR 206 (298)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCcCHHHHHH
Confidence 34555555422 223357788888988874 57766643
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=130.91 Aligned_cols=255 Identities=12% Similarity=0.084 Sum_probs=150.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||.|.||.+||..|.++ | ++|++|+|++. .+. +..
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~-G-----~~v~v~~~~~~-~~~--------------------------~~~------- 40 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA-G-----HQLHVTTIGPV-ADE--------------------------LLS------- 40 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC-C-----CeEEEEeCCHh-HHH--------------------------HHH-------
Confidence 6899999999999999999999 8 89999998763 221 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHHH---HHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~~---i~~~l~~~~~~~iIIs~tkG 199 (461)
.+.....++.++++.+|+||+|||.. ++++++.. +.+.+.+ ++++|.++ +
T Consensus 41 ----------------------~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~---g~ivvd~s-T 94 (292)
T PRK15059 41 ----------------------LGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLK---GKTIVDMS-S 94 (292)
T ss_pred ----------------------cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCC---CCEEEECC-C
Confidence 02233456778889999999999975 67777632 4444444 57777665 4
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
+.+.. ...+.+.+.+ .|.......+..||.-++ .|..+ ++++++++..++++.+|+.-+-+++...+.-.
T Consensus 95 ~~p~~-----~~~~~~~~~~-~G~~~vdaPVsGg~~~a~---~g~l~-~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~G~ 164 (292)
T PRK15059 95 ISPIE-----TKRFARQVNE-LGGDYLDAPVSGGEIGAR---EGTLS-IMVGGDEAVFERVKPLFELLGKNITLVGGNGD 164 (292)
T ss_pred CCHHH-----HHHHHHHHHH-cCCCEEEecCCCCHHHHh---cCcEE-EEEcCCHHHHHHHHHHHHHHcCCcEEeCCccH
Confidence 55441 2222233322 232111111222222221 33322 24577888889999999887766666555422
Q ss_pred HHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhccccchhHH---HHHHhcC
Q 012547 280 HEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWY---GQELAKG 356 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~---G~~l~~g 356 (461)
-...+++-|.+. .....++.|...++++.|.+++++.+ .+... ..+++.+ +..+.++
T Consensus 165 g~~~Kl~~N~l~--------------~~~~~a~~Ea~~la~~~Gld~~~~~~-----~l~~~-~~~s~~~~~~~~~~~~~ 224 (292)
T PRK15059 165 GQTCKVANQIIV--------------ALNIEAVSEALLFASKAGADPVRVRQ-----ALMGG-FASSRILEVHGERMIKR 224 (292)
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCHHHHHH-----HHHcC-cccCHHHHhhchhhhcC
Confidence 334444445531 22235789999999999999988753 22111 1111111 1111111
Q ss_pred CChhhHhhhhcCCCcc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHH
Q 012547 357 RLTLDLGDSIKGKGMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKIL 417 (461)
Q Consensus 357 ~~~~~~~~~~~~~~~v-EG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il 417 (461)
. +...-++ -..+..+.+.+++++.|+ + +|+.+.+.+++
T Consensus 225 ~--------~~~~f~l~~~~KDl~l~~~~a~~~g~--------------~-~p~~~~~~~~~ 263 (292)
T PRK15059 225 T--------FNPGFKIALHQKDLNLALQSAKALAL--------------N-LPNTATCQELF 263 (292)
T ss_pred C--------CCCCCchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHH
Confidence 0 0000012 224556678899999995 6 79988887766
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-11 Score=124.54 Aligned_cols=198 Identities=14% Similarity=0.123 Sum_probs=129.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.||+++|..|+++ | ++|.+|+|++++++.+..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~~~--------------------------------- 41 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG-G-----HEVVGYDRNPEAVEALAE--------------------------------- 41 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHH---------------------------------
Confidence 6899999999999999999999 8 999999999876543110
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC---CCEEEEcCCch-hHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~---aDiIIiaVps~-~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+....++++++++. +|+||+++|.. .++++++.+.+.+++ ++++|.++++
T Consensus 42 ----------------------~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~---g~ivid~st~ 96 (301)
T PRK09599 42 ----------------------EGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDELAPLLSP---GDIVIDGGNS 96 (301)
T ss_pred ----------------------CCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHHHhhCCC---CCEEEeCCCC
Confidence 023344566666554 69999999987 899999999888876 6788888765
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCc----eEEecC
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHF----TVWDNG 275 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~----~v~~s~ 275 (461)
-... ...+.+.+++ .|.......+..||.-+. .| . .++++++++..+.++.+|..-+- +++...
T Consensus 97 ~~~~------~~~~~~~~~~-~g~~~~dapvsG~~~~a~---~g-~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~G 164 (301)
T PRK09599 97 YYKD------DIRRAELLAE-KGIHFVDVGTSGGVWGLE---RG-Y-CLMIGGDKEAVERLEPIFKALAPRAEDGYLHAG 164 (301)
T ss_pred ChhH------HHHHHHHHHH-cCCEEEeCCCCcCHHHHh---cC-C-eEEecCCHHHHHHHHHHHHHHcccccCCeEeEC
Confidence 4432 1122222222 131111112223333322 34 3 34578888888888888876665 455556
Q ss_pred ChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHH--hCCCchhhcc
Q 012547 276 DLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHL--LAEEPEKLAG 331 (461)
Q Consensus 276 Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a--~G~~~~t~~g 331 (461)
++=.-...+.+.|.+. .....++.|...++++ .|.+++++..
T Consensus 165 ~~G~g~~~Kl~~n~l~--------------~~~~~~~aEa~~l~~~~~~gld~~~~~~ 208 (301)
T PRK09599 165 PVGAGHFVKMVHNGIE--------------YGMMQAYAEGFELLEASRFDLDLAAVAE 208 (301)
T ss_pred CCcHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 5422344455555421 2233578899999999 8998887654
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-12 Score=135.50 Aligned_cols=222 Identities=15% Similarity=0.093 Sum_probs=145.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|++|..+|..||+. |. +++|+.++.++++++.++... .+.+.+++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~-g~---g~~V~gvD~~~~~v~~l~~g~-----------------~~~~e~gl----- 54 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK-CP---DIEVVVVDISVPRIDAWNSDQ-----------------LPIYEPGL----- 54 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CC---CCeEEEEECCHHHHHHHHcCC-----------------CccCCCCH-----
Confidence 48999999999999999999987 51 267999999999888754322 11222222
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC--ch-------------hHHHHHHHHHHHhhcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--ST-------------ETKEVFEEISRYWKER 187 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp--s~-------------~~~~vl~~i~~~l~~~ 187 (461)
+|++.++. ..++.+++|.++++++||++|+||| .. ++++++++|.+++++
T Consensus 55 ------~ell~~~~--------~~~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~- 119 (473)
T PLN02353 55 ------DEVVKQCR--------GKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS- 119 (473)
T ss_pred ------HHHHHHhh--------cCCEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC-
Confidence 12332211 0247899999889999999999995 32 789999999999986
Q ss_pred CCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhcc----CceEEEEeC-Ch----hHHH
Q 012547 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARICG-AE----KWRK 258 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g----~~~~~~~~~-~~----~~~~ 258 (461)
+++|| ....+.+. +...+...+.+... ...+.+.+.|.+..+...- .+..+++++ ++ +..+
T Consensus 120 --~~lVv-~~STvp~G-----tt~~~~~~l~~~~~--g~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~ 189 (473)
T PLN02353 120 --DKIVV-EKSTVPVK-----TAEAIEKILTHNSK--GINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQ 189 (473)
T ss_pred --CcEEE-EeCCCCCC-----hHHHHHHHHHhhCC--CCCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHH
Confidence 55443 44344444 23333333433211 2356788999998765532 244445544 22 2467
Q ss_pred HHHHHhcCCC-ceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 259 PLAKFLRRPH-FTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 259 ~l~~ll~~~g-~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
.++++++.-. -..+...++...|+.+.+-|.+ ++.-+ ..++||..+|+++|+|...+
T Consensus 190 ~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~-------------ra~~I-af~NEla~lce~~giD~~eV 247 (473)
T PLN02353 190 ALKDVYAHWVPEERIITTNLWSAELSKLAANAF-------------LAQRI-SSVNAMSALCEATGADVSQV 247 (473)
T ss_pred HHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHH-------------HHHHH-HHHHHHHHHHHHhCCCHHHH
Confidence 7777776432 1345678899999999888873 21222 35689999999999876543
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-12 Score=125.20 Aligned_cols=190 Identities=15% Similarity=0.078 Sum_probs=127.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||.+++..|.+. |+ .. ..+.+|+|+.+..+.+.. ..+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~-g~-~~-~~i~v~~r~~~~~~~l~~----------------------~~~-------- 47 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS-PA-DV-SEIIVSPRNAQIAARLAE----------------------RFP-------- 47 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC-CC-Ch-heEEEECCCHHHHHHHHH----------------------HcC--------
Confidence 6899999999999999999987 72 11 356889998765442100 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
....++|.+++++++|+||+|||++.+.++++++. +.+ ++++||+..|+..+
T Consensus 48 -----------------------~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l~--~~~---~~~vis~~ag~~~~ 99 (258)
T PRK06476 48 -----------------------KVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRALR--FRP---GQTVISVIAATDRA 99 (258)
T ss_pred -----------------------CceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHHhc--cCC---CCEEEEECCCCCHH
Confidence 23455778888889999999999999999998873 344 67999988887654
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHHHHHH
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVM 283 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~ 283 (461)
.+++.++.. ...++.+|+++.....+... +..+. +.++++|+..|-.++..+.
T Consensus 100 ------------~l~~~~~~~--~~~~r~~P~~~~a~~~g~t~---~~~~~---~~~~~l~~~lG~~~~~~~e------- 152 (258)
T PRK06476 100 ------------ALLEWIGHD--VKLVRAIPLPFVAERKGVTA---IYPPD---PFVAALFDALGTAVECDSE------- 152 (258)
T ss_pred ------------HHHHHhCCC--CCEEEECCCChhhhCCCCeE---ecCCH---HHHHHHHHhcCCcEEECCh-------
Confidence 477766531 23578999988765554322 22222 4778888888877665422
Q ss_pred HHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhc
Q 012547 284 GGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 330 (461)
Q Consensus 284 galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~ 330 (461)
-.+|.|..++++. +.+...+.|+...++..|.+++...
T Consensus 153 -~~~d~~~a~~s~~--------a~~~~~~~~~~~~~~~~Gl~~~~a~ 190 (258)
T PRK06476 153 -EEYDLLAAASALM--------ATYFGILETATGWLEEQGLKRQKAR 190 (258)
T ss_pred -HhccceeehhccH--------HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 1223332222221 2222478899999999999987654
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.3e-13 Score=110.15 Aligned_cols=94 Identities=29% Similarity=0.371 Sum_probs=72.5
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEE-ecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~-~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
||+|||+|+||++++..|..+ |+ .+ ++|.++ +|++++++++..+ +
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-g~-~~-~~v~~~~~r~~~~~~~~~~~---------------------~---------- 46 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-GI-KP-HEVIIVSSRSPEKAAELAKE---------------------Y---------- 46 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-TS--G-GEEEEEEESSHHHHHHHHHH---------------------C----------
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC-Cc-eeEEeeccCcHHHHHHHHHh---------------------h----------
Confidence 799999999999999999998 75 33 899966 8998766542110 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEec-CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
++.++. +..++++++|+||+|||++++.++++++ +...+ ++++||+++|
T Consensus 47 -----------------------~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~---~~~vis~~ag 96 (96)
T PF03807_consen 47 -----------------------GVQATADDNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLK---GKLVISIAAG 96 (96)
T ss_dssp -----------------------TTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHT---TSEEEEESTT
T ss_pred -----------------------ccccccCChHHhhccCCEEEEEECHHHHHHHHHHH-hhccC---CCEEEEeCCC
Confidence 223333 6788899999999999999999999999 66665 6899999987
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=7e-12 Score=126.56 Aligned_cols=205 Identities=15% Similarity=0.164 Sum_probs=130.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..+||+|||+|.||+++|..|+.+ | ++|++|+++++.++.+++. +.... ..+.+.
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~-g-----~~V~~~d~~~~~~~~~~~~-----~~~~~---------~~~~~~----- 57 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARK-G-----LQVVLIDVMEGALERARGV-----IERAL---------GVYAPL----- 57 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH-----HHHHH---------HHhhhc-----
Confidence 347899999999999999999998 8 8999999998877654321 00000 000000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--HHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~--~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.. . +.....+..++|+++++++||+||+|||++. ...++.++.+++++ +++|+|.+.|
T Consensus 58 ---~~------~--------~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~---~~ii~s~tsg 117 (311)
T PRK06130 58 ---GI------A--------SAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDP---DTIFATNTSG 117 (311)
T ss_pred ---cc------H--------HHHhhceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCC---CcEEEECCCC
Confidence 00 0 0000146677888888899999999999874 78899999988776 6777888888
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeC--ChhHHHHHHHHhcCCCceEEec-CC
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN-GD 276 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~v~~s-~D 276 (461)
+... .+.+.++.+ .+ ++...|+.+..... ...++.+. +++..+.+.++|+..|..++.. .|
T Consensus 118 ~~~~------------~l~~~~~~~-~~-~ig~h~~~p~~~~~--l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d 181 (311)
T PRK06130 118 LPIT------------AIAQAVTRP-ER-FVGTHFFTPADVIP--LVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKD 181 (311)
T ss_pred CCHH------------HHHhhcCCc-cc-EEEEccCCCCccCc--eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 7643 355555422 23 34455666554332 22222222 5678899999999999876655 47
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
.-|..+. |+ +...++|...+++..|.+++.+
T Consensus 182 ~~G~i~n----r~------------------~~~~~~Ea~~l~~~g~~~~~~i 212 (311)
T PRK06130 182 IPGFIAN----RI------------------QHALAREAISLLEKGVASAEDI 212 (311)
T ss_pred CCCcHHH----HH------------------HHHHHHHHHHHHHcCCCCHHHH
Confidence 6554221 11 2234667667766666666543
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-13 Score=122.28 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=99.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
||||+|||.|.||+.||..|+++ | ++|++|+|+++.++++.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~-g-----~~v~~~d~~~~~~~~~~~-------------------------------- 42 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA-G-----YEVTVYDRSPEKAEALAE-------------------------------- 42 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT-T-----TEEEEEESSHHHHHHHHH--------------------------------
T ss_pred CCEEEEEchHHHHHHHHHHHHhc-C-----CeEEeeccchhhhhhhHH--------------------------------
Confidence 58999999999999999999999 8 999999999876553110
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHHH--HHHHhhccCCCCEEEEEeec
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEE--ISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~~--i~~~l~~~~~~~iIIs~tkG 199 (461)
.......+++++++.+|+||+|+|. .++++++.. +.+.+.+ ++++|.++ .
T Consensus 43 -----------------------~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~---g~iiid~s-T 95 (163)
T PF03446_consen 43 -----------------------AGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRP---GKIIIDMS-T 95 (163)
T ss_dssp -----------------------TTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-T---TEEEEE-S-S
T ss_pred -----------------------hhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhcccc---ceEEEecC-C
Confidence 0356678899999999999999997 789999998 8888876 67777655 4
Q ss_pred CccccccccccCCHHHHHHhHh---CCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEE
Q 012547 200 VEAELEAVPRIITPTQMINRAT---GVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~l---g~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~ 272 (461)
+.++. . ..+.+.+ |.......+..||.-+. .|..+ ++++++++..++++.+|+.-+-+++
T Consensus 96 ~~p~~-----~----~~~~~~~~~~g~~~vdapV~Gg~~~a~---~g~l~-~~~gG~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 96 ISPET-----S----RELAERLAAKGVRYVDAPVSGGPPGAE---EGTLT-IMVGGDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp --HHH-----H----HHHHHHHHHTTEEEEEEEEESHHHHHH---HTTEE-EEEES-HHHHHHHHHHHHHHEEEEE
T ss_pred cchhh-----h----hhhhhhhhhccceeeeeeeeccccccc---ccceE-EEccCCHHHHHHHHHHHHHHhCCce
Confidence 44441 1 2233332 21111223344444333 34322 3567888888899998876665554
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=131.49 Aligned_cols=210 Identities=17% Similarity=0.077 Sum_probs=134.7
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 38 ~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
|.+..+++|+|||.|.||+.||..|+++ | ++|++|+|+.++++.+.+. .. ..+.
T Consensus 1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~-G-----~~V~V~NRt~~k~~~l~~~--------~~------------~~Ga 54 (493)
T PLN02350 1 MASAALSRIGLAGLAVMGQNLALNIAEK-G-----FPISVYNRTTSKVDETVER--------AK------------KEGN 54 (493)
T ss_pred CCCCCCCCEEEEeeHHHHHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHHh--------hh------------hcCC
Confidence 4567788999999999999999999999 8 9999999998876642210 00 0000
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC---CCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEE
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~---aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iI 193 (461)
..+....+++++++. +|+||++||. ..++++++.+.+.+.+ +.++
T Consensus 55 ----------------------------~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~---G~ii 103 (493)
T PLN02350 55 ----------------------------LPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEP---GDCI 103 (493)
T ss_pred ----------------------------cccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCC---CCEE
Confidence 022345677777765 9999999996 5789999999998877 6788
Q ss_pred EEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCce---
Q 012547 194 ISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT--- 270 (461)
Q Consensus 194 Is~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~--- 270 (461)
|.+++.-...+ ....+.+.+ .|.......+..||.-|. .| + .++++++++..++++.+|+.-+-+
T Consensus 104 ID~sT~~~~~t------~~~~~~l~~-~Gi~fldapVSGG~~gA~---~G-~-~im~GG~~~a~~~v~pvL~~ia~k~~~ 171 (493)
T PLN02350 104 IDGGNEWYENT------ERRIKEAAE-KGLLYLGMGVSGGEEGAR---NG-P-SLMPGGSFEAYKNIEDILEKVAAQVDD 171 (493)
T ss_pred EECCCCCHHHH------HHHHHHHHH-cCCeEEeCCCcCCHHHhc---CC-C-eEEecCCHHHHHHHHHHHHHHhhhcCC
Confidence 88775543331 112222222 132111123444555443 34 3 457788888889999888765522
Q ss_pred ---EEecCChHHH-HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHH-hCCCchhhcc
Q 012547 271 ---VWDNGDLVTH-EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHL-LAEEPEKLAG 331 (461)
Q Consensus 271 ---v~~s~Di~gv-e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a-~G~~~~t~~g 331 (461)
+.+..+. |. ...+.+-|. -...+..++.|...+++. +|.+++.+..
T Consensus 172 ~~~v~~vG~~-GaG~~vKlv~N~--------------i~~~~m~~iaEA~~l~~~~~Gld~~~l~~ 222 (493)
T PLN02350 172 GPCVTYIGPG-GAGNFVKMVHNG--------------IEYGDMQLISEAYDVLKSVGGLSNEELAE 222 (493)
T ss_pred CCcEEEeCCc-CHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4444442 32 223333332 223445688999999988 6999877643
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.7e-11 Score=120.21 Aligned_cols=205 Identities=13% Similarity=0.091 Sum_probs=136.3
Q ss_pred ceEEEECccH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhh
Q 012547 44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (461)
Q Consensus 44 mkI~IIGaGa--------------------mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (461)
|||+|.|+|+ -|++||..|+++ | |+|++|+|+++..+. +++ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a-G-----~~V~v~Dr~~~~l~~---~~~----~----- 62 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA-G-----HDVVLAEPNRSILSE---ELW----K----- 62 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC-C-----CeEEEEECCHHHhhH---HHH----H-----
Confidence 7899999886 388999999999 8 999999998864431 000 0
Q ss_pred HHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh-HHHHHHHHHH
Q 012547 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISR 182 (461)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~-~~~vl~~i~~ 182 (461)
.+.. .++.+++|..+++++||+||+|+|+.. ++++++.+.+
T Consensus 63 ---------~l~~-----------------------------~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~ 104 (342)
T PRK12557 63 ---------KVED-----------------------------AGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILP 104 (342)
T ss_pred ---------HHHH-----------------------------CCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHh
Confidence 0100 145667788888899999999999988 9999999999
Q ss_pred HhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCC--------CCcEEEEeCcchhHhhhccCceEEEEeCCh
Q 012547 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP--------IENILYLGGPNIASEIYNKEYANARICGAE 254 (461)
Q Consensus 183 ~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~--------~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~ 254 (461)
.+.+ +++|++++++ .+. .+++.+.+.++.+ .++..+..+|+....+..+.++.....+++
T Consensus 105 ~L~~---g~IVId~ST~-~~~--------~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~ 172 (342)
T PRK12557 105 HLPE---NAVICNTCTV-SPV--------VLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELATE 172 (342)
T ss_pred hCCC---CCEEEEecCC-CHH--------HHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCCCH
Confidence 8876 6788877755 222 1234455544311 122233445555555554443322334467
Q ss_pred hHHHHHHHHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 255 KWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 255 ~~~~~l~~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
+..++++++|+..|.+++..+ . | .+.+.|-+ .|.-.+....++.|...+++++|.++..+..
T Consensus 173 e~~e~v~~LL~a~G~~v~~~~-~-g--~~~~vk~~-----------~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~ 234 (342)
T PRK12557 173 EQIEKCVELAESIGKEPYVVP-A-D--VVSAVADM-----------GSLVTAVALSGVLDYYSVGTKIIKAPKEMIE 234 (342)
T ss_pred HHHHHHHHHHHHcCCEEEEeC-H-H--HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 788999999999999887666 2 3 23333322 2223344456888999999999988876654
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-11 Score=130.52 Aligned_cols=172 Identities=18% Similarity=0.218 Sum_probs=115.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.|||+|||+|.||++||..|+.+ | ++|++|+++++.++.+.. .+.... .+..++...
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~-G-----~~V~v~D~~~~~~~~~~~-----~~~~~~-------~~~~~l~~~----- 60 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA-G-----IDVAVFDPHPEAERIIGE-----VLANAE-------RAYAMLTDA----- 60 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-----HHHHHH-------HHHhhhccc-----
Confidence 47999999999999999999999 8 999999999887664321 111000 011112110
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--HHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~--~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+. . ..++.+++|+++++++||+||.|+|++. .+.++.++.+++++ +++|.|.+.|+
T Consensus 61 --~~~-----~-----------~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~---~~iI~SsTsgi 119 (495)
T PRK07531 61 --PLP-----P-----------EGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARP---DALIGSSTSGF 119 (495)
T ss_pred --hhh-----h-----------hhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 000 0 0136788899999999999999999874 66678888888776 67888888887
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeC---ChhHHHHHHHHhcCCCceEEecC
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~---~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
... + +.+.+..+ ...++..|+.+.... ... .++++ +++..+.++++|...|..+....
T Consensus 120 ~~s-----------~-l~~~~~~~--~r~~~~hP~nP~~~~--~Lv-evv~g~~t~~e~~~~~~~~~~~lG~~~v~~~ 180 (495)
T PRK07531 120 LPS-----------D-LQEGMTHP--ERLFVAHPYNPVYLL--PLV-ELVGGGKTSPETIRRAKEILREIGMKPVHIA 180 (495)
T ss_pred CHH-----------H-HHhhcCCc--ceEEEEecCCCcccC--ceE-EEcCCCCCCHHHHHHHHHHHHHcCCEEEeec
Confidence 654 2 45555432 235667777654322 122 23333 36788999999999887766554
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.1e-12 Score=117.96 Aligned_cols=169 Identities=18% Similarity=0.219 Sum_probs=100.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||.|.+|..+|..||+. | |+|+.++.+++.++.++ ++. .+.+.+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~-G-----~~V~g~D~~~~~v~~l~---------~g~--------~p~~E~~l~----- 52 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK-G-----HQVIGVDIDEEKVEALN---------NGE--------LPIYEPGLD----- 52 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT-T-----SEEEEE-S-HHHHHHHH---------TTS--------SSS-CTTHH-----
T ss_pred CEEEEECCCcchHHHHHHHHhC-C-----CEEEEEeCChHHHHHHh---------hcc--------ccccccchh-----
Confidence 8999999999999999999999 8 99999999998877643 332 233444332
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------hhHHHHHHHHHHHhhccCCCCEE
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------~~~~~vl~~i~~~l~~~~~~~iI 193 (461)
+++.+.... .++.+++|.++++.++|++|+|||. .++.+++++|.+++++ +++
T Consensus 53 ------~ll~~~~~~-------~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~---~~l- 115 (185)
T PF03721_consen 53 ------ELLKENVSA-------GRLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP---GDL- 115 (185)
T ss_dssp ------HHHHHHHHT-------TSEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS---CEE-
T ss_pred ------hhhcccccc-------ccchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh---cce-
Confidence 344433211 2689999999999999999999985 2689999999999887 454
Q ss_pred EEEeecCccccccccccC-CHHHHHHhHhCCCCCcEEEEeCcchhHhhhc----cCceEEEEeCChhH-HHHHHHH
Q 012547 194 ISLAKGVEAELEAVPRII-TPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKW-RKPLAKF 263 (461)
Q Consensus 194 Is~tkGi~~~~~~~~~~~-~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~----g~~~~~~~~~~~~~-~~~l~~l 263 (461)
|.+-..+.+.+ .. ....++++..+.. ..+.+...|.+..+... ..+..++.+.+++. .+.++++
T Consensus 116 vV~~STvppGt-----t~~~~~~ile~~~~~~-~~f~la~~PErl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 116 VVIESTVPPGT-----TEELLKPILEKRSGKK-EDFHLAYSPERLREGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp EEESSSSSTTH-----HHHHHHHHHHHHCCTT-TCEEEEE------TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred EEEccEEEEee-----ehHhhhhhhhhhcccc-cCCeEEECCCccCCCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 44555666652 22 3334444443322 45778888998775442 23445555554443 3455543
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.3e-11 Score=142.35 Aligned_cols=278 Identities=12% Similarity=0.058 Sum_probs=167.4
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 38 ~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
|.....++|+|||.|+||.+||..|+++ | ++|.+|+|+++.++.+..
T Consensus 319 ~~~~~~~~IGfIGlG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~--------------------------- 365 (1378)
T PLN02858 319 MQAKPVKRIGFIGLGAMGFGMASHLLKS-N-----FSVCGYDVYKPTLVRFEN--------------------------- 365 (1378)
T ss_pred ccccCCCeEEEECchHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHH---------------------------
Confidence 3444568999999999999999999999 8 999999999875543110
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHHH---HHHHHhhccCCCCEE
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE---EISRYWKERITVPVI 193 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl~---~i~~~l~~~~~~~iI 193 (461)
.......++.+++++||+||+||| +.++++++. .+.+.+.+ ++++
T Consensus 366 ----------------------------~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~---g~iv 414 (1378)
T PLN02858 366 ----------------------------AGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPA---GASI 414 (1378)
T ss_pred ----------------------------cCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCC---CCEE
Confidence 012234678888999999999999 778888873 35555555 6777
Q ss_pred EEEeecCccccccccccCCHHHHHHhH-hCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEE
Q 012547 194 ISLAKGVEAELEAVPRIITPTQMINRA-TGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (461)
Q Consensus 194 Is~tkGi~~~~~~~~~~~~~se~i~~~-lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~ 272 (461)
|.++ .+.+.. ...+.+.+.+. .|.......+..||.-+. .|..+ ++++++++..++++.+|+.-+-+++
T Consensus 415 Vd~S-TvsP~~-----~~~la~~l~~~g~g~~~lDAPVsGg~~~A~---~G~L~-imvgG~~~~~~~~~plL~~lg~~i~ 484 (1378)
T PLN02858 415 VLSS-TVSPGF-----VIQLERRLENEGRDIKLVDAPVSGGVKRAA---MGTLT-IMASGTDEALKSAGSVLSALSEKLY 484 (1378)
T ss_pred EECC-CCCHHH-----HHHHHHHHHhhCCCcEEEEccCCCChhhhh---cCCce-EEEECCHHHHHHHHHHHHHHhCcEE
Confidence 7665 444441 22223333321 111111112334444332 34333 3567788888899999987776666
Q ss_pred e-cCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC---hhhhhhhhccccchhH
Q 012547 273 D-NGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP---LLADTYVTLLKGRNAW 348 (461)
Q Consensus 273 ~-s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~---glgDl~~T~~~sRN~~ 348 (461)
+ ..++-.....+++-|.+. .....++.|+..++++.|.+++++... +.+..... +|+
T Consensus 485 ~~~g~~G~a~~~KL~nN~l~--------------~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~----~~~- 545 (1378)
T PLN02858 485 VIKGGCGAGSGVKMVNQLLA--------------GVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMF----ENR- 545 (1378)
T ss_pred EeCCCCCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhh----hhc-
Confidence 5 556544556666666631 223457899999999999999887642 22221100 111
Q ss_pred HHHHHhcCCChhhHhhhhcCCCcc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh-------cC
Q 012547 349 YGQELAKGRLTLDLGDSIKGKGMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI-------MR 420 (461)
Q Consensus 349 ~G~~l~~g~~~~~~~~~~~~~~~v-EG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~-------~~ 420 (461)
.-..+.+..+. .-++ -.....+.+.+++++.|+ + +|+.+.+.+++. ++
T Consensus 546 ~~~~l~~d~~~---------~f~l~l~~KDl~l~~~~a~~~g~--------------~-~pl~~~~~~~~~~a~~~G~g~ 601 (1378)
T PLN02858 546 VPHMLDNDYTP---------YSALDIFVKDLGIVSREGSSRKI--------------P-LHLSTVAHQLFLAGSASGWGR 601 (1378)
T ss_pred cchhhcCCCCC---------CchhHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHHHHHhcCCCc
Confidence 00111111110 0011 223455678888999995 6 788888777662 23
Q ss_pred CCHHHHHHHHHhc
Q 012547 421 ESPIQAILEALRD 433 (461)
Q Consensus 421 ~~~~~~~~~~l~~ 433 (461)
.+ ..++.+++.+
T Consensus 602 ~D-~sav~~~~~~ 613 (1378)
T PLN02858 602 ID-DAAVVKVYET 613 (1378)
T ss_pred cC-hHHHHHHHHH
Confidence 33 4455566654
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=124.57 Aligned_cols=158 Identities=17% Similarity=0.141 Sum_probs=111.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch-hhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+||+|||+|+||.++|..|.++ | ++|.++.++.. ..+. ...
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~s-G-----~~Viv~~~~~~~~~~~--------------------------a~~----- 45 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDS-G-----LNVIVGLRKGGASWKK--------------------------ATE----- 45 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHC-C-----CeEEEEECcChhhHHH--------------------------HHH-----
Confidence 36899999999999999999998 7 78877666532 1111 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.++.. .+..+++++||+|++++|++ +...+++++.+.+++ + .+||++.|+
T Consensus 46 ------------------------~Gv~~-~s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~~~l~~---g-~iVs~aaG~ 96 (314)
T TIGR00465 46 ------------------------DGFKV-GTVEEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKE---G-KTLGFSHGF 96 (314)
T ss_pred ------------------------CCCEE-CCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHhhCCC---C-cEEEEeCCc
Confidence 02333 34777889999999999998 777778889988875 4 489999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHh-h------hccCceEEEEeC--ChhHHHHHHHHhcCCCce-
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-I------YNKEYANARICG--AEKWRKPLAKFLRRPHFT- 270 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~e-v------~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~- 270 (461)
... .++..++. ..+ +++.+||.+.. + +.|.++++.+.. +.+..+.+..+|+..|..
T Consensus 97 ~i~------------~~~~~~~~-~~~-VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~~ 162 (314)
T TIGR00465 97 NIH------------FVQIVPPK-DVD-VVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGGR 162 (314)
T ss_pred cHh------------hccccCCC-CCc-EEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCc
Confidence 875 24555542 123 68999999998 4 888776643432 455667788888877755
Q ss_pred ------E---EecCChHHH
Q 012547 271 ------V---WDNGDLVTH 280 (461)
Q Consensus 271 ------v---~~s~Di~gv 280 (461)
. ++.+|..+.
T Consensus 163 ~~~~~t~f~~e~~edl~~~ 181 (314)
T TIGR00465 163 AGVLETTFKEETESDLFGE 181 (314)
T ss_pred cceeechhHhhhhHHhcCc
Confidence 2 555666553
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-11 Score=121.88 Aligned_cols=192 Identities=16% Similarity=0.135 Sum_probs=117.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.||+|||+|.||+++|..|+.+ | ++|++|+++++.++...+. +++........... ......
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~~-----i~~~~~~l~~~~~~-g~~~~~------ 65 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-G-----YDVTIVDVSEEILKNAMEL-----IESGPYGLRNLVEK-GKMSED------ 65 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHH-----HHhhhhhHHHHHHc-CCCCHH------
Confidence 5899999999999999999999 8 8999999999877643211 11100000000000 000000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--HHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~--~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.. ++ ...++.+++|. +++++||+||+|+|++. .+++++++.+++++ +++++|.++|+.
T Consensus 66 -~~--~~-------------~~~~i~~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~---~~il~S~tsg~~ 125 (291)
T PRK06035 66 -EA--KA-------------IMARIRTSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSP---ETIIASNTSGIM 125 (291)
T ss_pred -HH--HH-------------HHhCcEeeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEEcCCCCC
Confidence 00 00 01246677777 46899999999999875 78899999998887 788999998876
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
.. .+.+.+..+ .++ +-..|..+..+... ..++.+ .+++..+.+.+++...|..+....|.-|
T Consensus 126 ~~------------~la~~~~~~-~r~-ig~hf~~P~~~~~~--vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pg 189 (291)
T PRK06035 126 IA------------EIATALERK-DRF-IGMHWFNPAPVMKL--IEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPG 189 (291)
T ss_pred HH------------HHHhhcCCc-ccE-EEEecCCCcccCcc--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCC
Confidence 54 255555432 232 22333332222221 112222 2567788999999999988877777655
Q ss_pred HHHHHHHHHH
Q 012547 280 HEVMGGLKNV 289 (461)
Q Consensus 280 ve~~galKNv 289 (461)
-....++-|.
T Consensus 190 fv~nRl~~~~ 199 (291)
T PRK06035 190 FFTTRFIEGW 199 (291)
T ss_pred eeHHHHHHHH
Confidence 4343333333
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=129.07 Aligned_cols=202 Identities=14% Similarity=0.070 Sum_probs=131.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||.|.||++||..|+++ | ++|++|+|+++.++.+.+. .. +. +
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-G-----~~V~v~dr~~~~~~~l~~~--------~~--------~~----g------- 48 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-G-----FKISVYNRTYEKTEEFVKK--------AK--------EG----N------- 48 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHh--------hh--------hc----C-------
Confidence 5899999999999999999999 8 9999999999877653211 00 00 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc---CCCEEEEcCC-chhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLP-STETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~---~aDiIIiaVp-s~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
..+..++++++++. ++|+||+++| ++.++++++++.+++.+ +++||.++|+
T Consensus 49 ----------------------~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~---g~iIID~gn~ 103 (470)
T PTZ00142 49 ----------------------TRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEK---GDIIIDGGNE 103 (470)
T ss_pred ----------------------CcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCC---CCEEEECCCC
Confidence 02345678888775 5898888865 57999999999999987 7899999988
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCce------EEe
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT------VWD 273 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~------v~~ 273 (461)
...++ .....+ +.+ .|.......+..||.-|+ .| + .++++++++..+.++.+|..-+-+ +.+
T Consensus 104 ~~~dt-----~~r~~~-l~~-~Gi~fldapVSGG~~gA~---~G-~-~lm~GG~~~a~~~~~piL~~ia~~~~~~~~~~~ 171 (470)
T PTZ00142 104 WYLNT-----ERRIKR-CEE-KGILYLGMGVSGGEEGAR---YG-P-SLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTY 171 (470)
T ss_pred CHHHH-----HHHHHH-HHH-cCCeEEcCCCCCCHHHHh---cC-C-EEEEeCCHHHHHHHHHHHHHHhhhcCCCCeEEE
Confidence 76652 122222 222 132111223344444443 33 3 457788888888888888765544 222
Q ss_pred cCChHHH-HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHH-HhCCCchhhc
Q 012547 274 NGDLVTH-EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITH-LLAEEPEKLA 330 (461)
Q Consensus 274 s~Di~gv-e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~-a~G~~~~t~~ 330 (461)
..+. |. -..+.+-|. -...+.+++.|...+++ ..|.+++.+.
T Consensus 172 ~G~~-GaGh~vKmvhN~--------------ie~~~m~~iaEa~~l~~~~~gl~~~~l~ 215 (470)
T PTZ00142 172 VGPG-SSGHYVKMVHNG--------------IEYGDMQLISESYKLMKHILGMSNEELS 215 (470)
T ss_pred ECCC-CHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 2222 22 122222222 22334468899999997 6888877653
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-11 Score=142.98 Aligned_cols=290 Identities=12% Similarity=0.086 Sum_probs=171.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.||++||.|.||..||..|.++ | ++|++|+|+++.++.+..
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~-G-----~~v~v~dr~~~~~~~l~~--------------------------------- 45 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS-G-----FKVQAFEISTPLMEKFCE--------------------------------- 45 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH---------------------------------
Confidence 5799999999999999999999 8 999999999876553110
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH---HHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl---~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+....+++.+++++||+||+|+|. .++++++ +.+.+.+.+ ++++|.++ .
T Consensus 46 ----------------------~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~---g~iivd~S-T 99 (1378)
T PLN02858 46 ----------------------LGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQK---GAVILIRS-T 99 (1378)
T ss_pred ----------------------cCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCC---cCEEEECC-C
Confidence 0234557888999999999999995 5778886 456665555 67777665 4
Q ss_pred CccccccccccCCHHHHHHhHhC--CCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEe-cCC
Q 012547 200 VEAELEAVPRIITPTQMINRATG--VPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD-NGD 276 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg--~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~-s~D 276 (461)
+.+.. ...+.+.+.+ .| .......+..||.-|. .|..+ ++++++++..++++.+|+.-+-+++. ..+
T Consensus 100 i~p~~-----~~~la~~l~~-~g~~~~~lDaPVsGg~~~A~---~G~L~-imvGG~~~~~~~~~p~l~~~g~~i~~~~G~ 169 (1378)
T PLN02858 100 ILPLQ-----LQKLEKKLTE-RKEQIFLVDAYVSKGMSDLL---NGKLM-IIASGRSDAITRAQPFLSAMCQKLYTFEGE 169 (1378)
T ss_pred CCHHH-----HHHHHHHHHh-cCCceEEEEccCcCCHHHHh---cCCeE-EEEcCCHHHHHHHHHHHHHhcCceEEecCC
Confidence 55541 2222232322 12 1111222344455443 34332 35678888889999999887766654 344
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC---hhhhhhhhccccchhHHHHHH
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP---LLADTYVTLLKGRNAWYGQEL 353 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~---glgDl~~T~~~sRN~~~G~~l 353 (461)
.=.-...+++-|. -.+....++.|...++++.|.+++.+++. +.|.... .+++ +..+
T Consensus 170 ~G~g~~~KL~nN~--------------l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~----~~~~--~~~~ 229 (1378)
T PLN02858 170 IGAGSKVKMVNEL--------------LEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWI----FKNH--VPLL 229 (1378)
T ss_pred CCHhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHH----HHhh--hhHh
Confidence 3222334444444 22334467899999999999999887642 2222111 1111 1112
Q ss_pred hcCCChhhHhhhhcCCCcc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc-------CCCHHH
Q 012547 354 AKGRLTLDLGDSIKGKGMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM-------RESPIQ 425 (461)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~v-EG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~-------~~~~~~ 425 (461)
.++.- ...-++ -....+..+.+++++.|+ + +|+...+++++.. +.+ ..
T Consensus 230 ~~~d~--------~~~F~l~l~~KDl~la~~~A~~~g~--------------~-lpl~~~a~~~~~~a~~~G~g~~D-~s 285 (1378)
T PLN02858 230 LKDDY--------IEGRFLNVLVQNLGIVLDMAKSLPF--------------P-LPLLAVAHQQLISGSSSMQGDDT-AT 285 (1378)
T ss_pred hcCCC--------CCCchhHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHHHHHhcCCCccC-hH
Confidence 11110 000011 223445578888999985 6 7888888877632 333 44
Q ss_pred HHHHHHhcccCCCcccccccccceeeecccc
Q 012547 426 AILEALRDETMNDPRDRIEIAQTHVFYRPSL 456 (461)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (461)
++.+++.+.... +++-+-+.-.|.|+-
T Consensus 286 av~~~~~~~~g~----~~~~~~~~~~~~~~~ 312 (1378)
T PLN02858 286 SLAKVWEKVFGV----NILEAANRELYKPED 312 (1378)
T ss_pred HHHHHHHHHcCC----CccccccccccChHH
Confidence 455555542221 344444444555543
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-11 Score=116.92 Aligned_cols=148 Identities=18% Similarity=0.101 Sum_probs=108.9
Q ss_pred eEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 148 i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
+..+.+..+++.++|+||+|||++.++++++++.+++.+ +++|||+++|+..+ .+++.++.. .
T Consensus 31 ~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~---~~~ivS~~agi~~~------------~l~~~~~~~--~ 93 (245)
T TIGR00112 31 IVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGK---DKLLISIAAGVTLE------------KLSQLLGGT--R 93 (245)
T ss_pred cEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccC---CCEEEEecCCCCHH------------HHHHHcCCC--C
Confidence 345567778888999999999999999999999987765 67999999999875 377777632 2
Q ss_pred EEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHH
Q 012547 228 ILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKS 305 (461)
Q Consensus 228 v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a 305 (461)
.+++.+||.+..++.|.... ..+ .+++..+.+.++|+..|..+++.++.+. .+...+|- ++
T Consensus 94 ~ivR~mPn~~~~~~~g~t~~-~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~---------~~talsgs---gP---- 156 (245)
T TIGR00112 94 RVVRVMPNTPAKVGAGVTAI-AANANVSEEDRALVLALFKAVGEVVELPEALMD---------AVTALSGS---GP---- 156 (245)
T ss_pred eEEEECCChHHHHhCCeEEE-ecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcc---------hHHhhccC---cH----
Confidence 36899999999998885332 232 2456778999999999988888776432 22222221 12
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhh
Q 012547 306 VYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 306 ~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
+++...+..|..-+...|.+++..
T Consensus 157 A~~~~~~~al~~~~v~~Gl~~~~A 180 (245)
T TIGR00112 157 AYVFLFIEALADAGVKQGLPRELA 180 (245)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 455556667777788889987654
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-11 Score=120.52 Aligned_cols=220 Identities=18% Similarity=0.208 Sum_probs=143.4
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
...+.++|+|||.|++|..+|..+|++ | ++|.-+|.++.+++.+ |.+. .|.....
T Consensus 5 ~k~~~~~I~ViGLGYVGLPlA~~fA~~-G-----~~ViG~DIn~~~Vd~l---------n~G~----------~~i~e~~ 59 (436)
T COG0677 5 IKNMSATIGVIGLGYVGLPLAAAFASA-G-----FKVIGVDINQKKVDKL---------NRGE----------SYIEEPD 59 (436)
T ss_pred hcCCceEEEEEccccccHHHHHHHHHc-C-----CceEeEeCCHHHHHHH---------hCCc----------ceeecCc
Confidence 344558999999999999999999999 8 9999999999988864 4433 1222110
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------hhHHHHHHHHHHHhhccC
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERI 188 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------~~~~~vl~~i~~~l~~~~ 188 (461)
+ ++++.+-+.. ..+++|+|.++ ++.||++|+|||. .++++..+.|+++|++
T Consensus 60 -------~--~~~v~~~v~~-------g~lraTtd~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~k-- 120 (436)
T COG0677 60 -------L--DEVVKEAVES-------GKLRATTDPEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKK-- 120 (436)
T ss_pred -------H--HHHHHHHHhc-------CCceEecChhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCC--
Confidence 0 1222222211 26899999987 5699999999997 3799999999999997
Q ss_pred CCCEEEEEeecCccccccccccCCHHHHHHhH-hCCCC-CcEEEEeCcch-----hH-hhhccCceEEEEeC-ChhHHHH
Q 012547 189 TVPVIISLAKGVEAELEAVPRIITPTQMINRA-TGVPI-ENILYLGGPNI-----AS-EIYNKEYANARICG-AEKWRKP 259 (461)
Q Consensus 189 ~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~-lg~~~-~~v~vlsGPn~-----a~-ev~~g~~~~~~~~~-~~~~~~~ 259 (461)
+..|| +-..+.+. +...+...+.+. .|... ..+.+-.-|.- .. |+. ..+ - ++++ .++..+.
T Consensus 121 -G~LVI-lEST~~PG-----TTe~v~~plle~~sgL~~~~Df~laysPERv~PG~~~~el~-~~~-k-VIgG~tp~~~e~ 190 (436)
T COG0677 121 -GDLVI-LESTTPPG-----TTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELV-NNP-K-VIGGVTPKCAEL 190 (436)
T ss_pred -CCEEE-EecCCCCC-----cHHHHHHHHHhhcCCCcccceeeEeeCccccCCCchhhhhh-cCC-c-eeecCCHHHHHH
Confidence 56544 55566665 344444444443 22211 23433333433 22 111 111 1 3444 4555677
Q ss_pred HHHHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCc
Q 012547 260 LAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEP 326 (461)
Q Consensus 260 l~~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~ 326 (461)
.+.++++---.+...+|.+..|+++++-|++ |. .--...+|+..+|+++|.+.
T Consensus 191 a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~f-------------Rd-VNIALaNElali~~~~GIdv 243 (436)
T COG0677 191 AAALYKTIVEGVIPVTSARTAEMVKLTENTF-------------RD-VNIALANELALICNAMGIDV 243 (436)
T ss_pred HHHHHHHheEEEEEcCChHHHHHHHHHhhhh-------------hH-HHHHHHHHHHHHHHHhCCcH
Confidence 7777766555577789999999999999983 11 11235689999999999864
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-10 Score=116.98 Aligned_cols=158 Identities=19% Similarity=0.174 Sum_probs=109.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||.|+||.++|..|... | ++|.++.++....... ...
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s-G-----~~Vvv~~r~~~~s~~~-------------------------A~~------- 59 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS-G-----VDVVVGLREGSKSWKK-------------------------AEA------- 59 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC-C-----CEEEEEECCchhhHHH-------------------------HHH-------
Confidence 6899999999999999999998 8 8999888775422110 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHH-HHHHHHhhccCCCCEEEEEeecCcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.++.. .+.+++++.||+|+++||+....+++ +++.+++++ ++++ +++.|+..
T Consensus 60 ----------------------~G~~~-~s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~---g~iL-~~a~G~~i 112 (330)
T PRK05479 60 ----------------------DGFEV-LTVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKE---GAAL-AFAHGFNI 112 (330)
T ss_pred ----------------------CCCee-CCHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCC---CCEE-EECCCCCh
Confidence 02233 37788899999999999999889999 789998887 5655 88889876
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHh-------hhccCceEEEEeCC--hhHHHHHHHHhcCCC-----
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-------IYNKEYANARICGA--EKWRKPLAKFLRRPH----- 268 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~e-------v~~g~~~~~~~~~~--~~~~~~l~~ll~~~g----- 268 (461)
.. .+...+. ..+ +++..|+.+-+ ++.|.++.+.+..+ .+..+.+..++...|
T Consensus 113 ~~------------~~~~p~~-~~~-Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g 178 (330)
T PRK05479 113 HF------------GQIVPPA-DVD-VIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAG 178 (330)
T ss_pred hh------------ceeccCC-CCc-EEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccc
Confidence 51 2332332 223 56778999877 77787776544433 555666666666544
Q ss_pred -----ceEEecCChHHH
Q 012547 269 -----FTVWDNGDLVTH 280 (461)
Q Consensus 269 -----~~v~~s~Di~gv 280 (461)
|+-...+|+.|-
T Consensus 179 ~~~ttf~~e~~~dl~ge 195 (330)
T PRK05479 179 VIETTFKEETETDLFGE 195 (330)
T ss_pred eeeeeecccccccchhh
Confidence 333445677764
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-10 Score=116.60 Aligned_cols=183 Identities=20% Similarity=0.255 Sum_probs=112.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.||+++|..++.+ | ++|++|+++++.++.+... +.... ..+.+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~~-~~~~~-------------~~~~~~~----- 57 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH-G-----FDVTIYDISDEALEKAKER-IAKLA-------------DRYVRDL----- 57 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHH-HHHHH-------------HHHHHcC-----
Confidence 46899999999999999999999 8 9999999998877654321 10010 1111110
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+.+.+-.. ....++..++|+++++++||+||+|+|++ ..+++++++.+++++ ++++++.+.++
T Consensus 58 --~~~~~~~~~---------~~~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~---~~ii~sntSt~ 123 (287)
T PRK08293 58 --EATKEAPAE---------AALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPE---KTIFATNSSTL 123 (287)
T ss_pred --CCChhhhHH---------HHHcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CCEEEECcccC
Confidence 000000000 00126788899999899999999999976 788999999998876 67666655444
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE--eCChhHHHHHHHHhcCCCceEEe-cCCh
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWD-NGDL 277 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~~-s~Di 277 (461)
. +++ +.+.+..+ .++.. .-| ...........++. ..+++..+.+.+++...|..+.. ..|.
T Consensus 124 ~-----------~~~-~~~~~~~~-~r~vg-~Hf--~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~ 187 (287)
T PRK08293 124 L-----------PSQ-FAEATGRP-EKFLA-LHF--ANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQ 187 (287)
T ss_pred C-----------HHH-HHhhcCCc-ccEEE-EcC--CCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 3 334 34444432 23221 112 11112222222232 24567889999999998877544 4465
Q ss_pred HHH
Q 012547 278 VTH 280 (461)
Q Consensus 278 ~gv 280 (461)
-|-
T Consensus 188 pgf 190 (287)
T PRK08293 188 PGY 190 (287)
T ss_pred CCH
Confidence 543
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.7e-11 Score=117.93 Aligned_cols=177 Identities=15% Similarity=0.144 Sum_probs=119.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhh---hhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATA---EHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~---~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+||+|||+|.||.++|..++.+ | ++|++|+++++.++.... +.+....+.+ ........
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-g-----~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g----------~~~~~~~~-- 65 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-G-----YDVVMVDISDAAVDRGLATITKSLDRLVKKG----------KMTEADKE-- 65 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-C-----CceEEEeCCHHHHHHHHHHHHHHHHHHHHcC----------CCCHHHHH--
Confidence 5899999999999999999999 8 899999999987753211 0111111110 00000000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--HHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~--~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
+ ...++.+++|.++ +++||+||+|+|.+. ..++++++.+++++ +++++|.+.
T Consensus 66 ---------~-------------~~~~l~~~~~~~~-~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~---~~il~s~ts 119 (282)
T PRK05808 66 ---------A-------------ALARITGTTDLDD-LKDADLVIEAATENMDLKKKIFAQLDEIAKP---EAILATNTS 119 (282)
T ss_pred ---------H-------------HHhCeEEeCCHHH-hccCCeeeecccccHHHHHHHHHHHHhhCCC---CcEEEECCC
Confidence 0 0125677888864 799999999999754 37999999999987 788888888
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE--eCChhHHHHHHHHhcCCCceEEecCC
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
|+... .+.+.++.+ .+ .+...|+.+..+..+. .++. ..+++..+.+.++|...|..+....|
T Consensus 120 ~~~~~------------~la~~~~~~-~r-~ig~h~~~P~~~~~~v--ev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d 183 (282)
T PRK05808 120 SLSIT------------ELAAATKRP-DK-VIGMHFFNPVPVMKLV--EIIRGLATSDATHEAVEALAKKIGKTPVEVKN 183 (282)
T ss_pred CCCHH------------HHHHhhCCC-cc-eEEeeccCCcccCccE--EEeCCCCCCHHHHHHHHHHHHHcCCeeEEecC
Confidence 87654 356666543 23 4566777766554442 2222 34578889999999999988777677
Q ss_pred hHHH
Q 012547 277 LVTH 280 (461)
Q Consensus 277 i~gv 280 (461)
.-|-
T Consensus 184 ~~g~ 187 (282)
T PRK05808 184 APGF 187 (282)
T ss_pred ccCh
Confidence 6543
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-10 Score=117.42 Aligned_cols=206 Identities=16% Similarity=0.135 Sum_probs=129.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhh---hHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAE---HLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~---~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+|+|+|||+|.||+++|..|+++ | ++|++|+++++.++.+... .+....+. .+++...
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~-G-----~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~------------g~~~~~~- 62 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA-G-----HEVRLWDADPAAAAAAPAYIAGRLEDLAAF------------DLLDGEA- 62 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC-C-----CeeEEEeCCHHHHHHHHHHHHHHHHHHHHc------------CCCchhh-
Confidence 36899999999999999999999 8 9999999998776653221 00000000 0111000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
.+....++..++|++++++++|+||.|+|+. ....++.++.++.++ ++++.|.+
T Consensus 63 ---------------------~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~---~~ii~sst 118 (308)
T PRK06129 63 ---------------------PDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPP---HAILASST 118 (308)
T ss_pred ---------------------HHHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCC---cceEEEeC
Confidence 0000125678899998899999999999986 577788888877665 56666666
Q ss_pred ecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE--eCChhHHHHHHHHhcCCCceEEec-
Q 012547 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDN- 274 (461)
Q Consensus 198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~~s- 274 (461)
+++.. ..+.+.+..+ .. .+...|-.+.... ....++. .++++..+.+.++|...|.++...
T Consensus 119 s~~~~------------~~la~~~~~~-~~-~~~~hp~~p~~~~--~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~ 182 (308)
T PRK06129 119 SALLA------------SAFTEHLAGR-ER-CLVAHPINPPYLI--PVVEVVPAPWTAPATLARAEALYRAAGQSPVRLR 182 (308)
T ss_pred CCCCH------------HHHHHhcCCc-cc-EEEEecCCCcccC--ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 55432 2355555432 12 2333333221100 1111221 256778899999999988876655
Q ss_pred CChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 275 GDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 275 ~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
.|.-|. + - | -++...++|...+++..|.+++.+
T Consensus 183 ~~~~G~-i----~--------------n---rl~~a~~~EA~~l~~~g~~~~~~i 215 (308)
T PRK06129 183 REIDGF-V----L--------------N---RLQGALLREAFRLVADGVASVDDI 215 (308)
T ss_pred CCCccH-H----H--------------H---HHHHHHHHHHHHHHHcCCCCHHHH
Confidence 455443 1 1 1 133468899999999999998776
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.4e-10 Score=112.46 Aligned_cols=178 Identities=19% Similarity=0.184 Sum_probs=112.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.||+|||+|.||..+|..|+++ | ++|++|+++++.++.+... +........ ....+...
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G-----~~V~~~d~~~~~~~~~~~~-~~~~~~~~~--------~~g~~~~~------ 60 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-G-----FQTTLVDIKQEQLESAQQE-IASIFEQGV--------ARGKLTEA------ 60 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-C-----CcEEEEeCCHHHHHHHHHH-HHHHHHHHH--------HcCCCCHH------
Confidence 5899999999999999999999 8 9999999999887764432 111111100 00000000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--HHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~--~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.. +....++..++++++++++||+||+|+|.+. ...++.++.+++++ ++++++.+.++.
T Consensus 61 -~~---------------~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~---~~il~~~tSt~~ 121 (288)
T PRK09260 61 -AR---------------QAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPA---ECYIATNTSTMS 121 (288)
T ss_pred -HH---------------HHHHhCeEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCCC
Confidence 00 0001256788899889999999999999874 56778888888876 676666665555
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcE-E-EEeCcchhHhhhccCceEEEEeC---ChhHHHHHHHHhcCCCceEEecCC
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENI-L-YLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v-~-vlsGPn~a~ev~~g~~~~~~~~~---~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
+. + +.+....+ .++ . ....|-. .+.... ++++ +++..+.++.+|...+..+....|
T Consensus 122 ~~-----------~-l~~~~~~~-~r~~g~h~~~Pv~-----~~~Lve-~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d 182 (288)
T PRK09260 122 PT-----------E-IASFTKRP-ERVIAMHFFNPVH-----KMKLVE-LIRGLETSDETVQVAKEVAEQMGKETVVVNE 182 (288)
T ss_pred HH-----------H-HHhhcCCc-ccEEEEecCCCcc-----cCceEE-EeCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 43 3 44444322 111 1 1112321 222222 3333 678889999999998988777677
Q ss_pred hHHH
Q 012547 277 LVTH 280 (461)
Q Consensus 277 i~gv 280 (461)
.-|-
T Consensus 183 ~~Gf 186 (288)
T PRK09260 183 FPGF 186 (288)
T ss_pred cccH
Confidence 5543
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-11 Score=110.75 Aligned_cols=116 Identities=22% Similarity=0.351 Sum_probs=84.2
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCCc
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRT 125 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~ 125 (461)
|+|+|+|++|+.+|..|++. | ++|+++.|++ .++.++++++ .+.... ++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g-----~~V~l~~r~~-~~~~~~~~g~-------------------~~~~~~---~~~~ 51 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-G-----HDVTLVSRSP-RLEAIKEQGL-------------------TITGPD---GDET 51 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-T-----CEEEEEESHH-HHHHHHHHCE-------------------EEEETT---EEEE
T ss_pred CEEECcCHHHHHHHHHHHHC-C-----CceEEEEccc-cHHhhhheeE-------------------EEEecc---ccee
Confidence 78999999999999999998 8 9999999998 6665443321 011000 0000
Q ss_pred cchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccc
Q 012547 126 LHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE 205 (461)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~ 205 (461)
+ .......+..+....+|+||+|||+.+++++++.+++++.+ ++.|++++||+...
T Consensus 52 ~-------------------~~~~~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~~~~---~t~iv~~qNG~g~~-- 107 (151)
T PF02558_consen 52 V-------------------QPPIVISAPSADAGPYDLVIVAVKAYQLEQALQSLKPYLDP---NTTIVSLQNGMGNE-- 107 (151)
T ss_dssp E-------------------EEEEEESSHGHHHSTESEEEE-SSGGGHHHHHHHHCTGEET---TEEEEEESSSSSHH--
T ss_pred c-------------------ccccccCcchhccCCCcEEEEEecccchHHHHHHHhhccCC---CcEEEEEeCCCCcH--
Confidence 1 01222333323468899999999999999999999999987 68999999999876
Q ss_pred cccccCCHHHHHHhHhCC
Q 012547 206 AVPRIITPTQMINRATGV 223 (461)
Q Consensus 206 ~~~~~~~~se~i~~~lg~ 223 (461)
+.+.+.++.
T Consensus 108 ---------~~l~~~~~~ 116 (151)
T PF02558_consen 108 ---------EVLAEYFPR 116 (151)
T ss_dssp ---------HHHHCHSTG
T ss_pred ---------HHHHHHcCC
Confidence 667777753
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-10 Score=112.76 Aligned_cols=177 Identities=15% Similarity=0.194 Sum_probs=110.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.||+++|..|+.+ | ++|++|+++++.++.+... +.+.. ..+.+. +.++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~~~~~~~~-----i~~~~---------~~~~~~--g~~~ 61 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA-G-----YDVLLNDVSADRLEAGLAT-----INGNL---------ARQVAK--GKIS 61 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHH-----HHHHH---------HHHHHc--CCCC
Confidence 46899999999999999999999 8 9999999998877642211 11100 000000 0000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.... . ....++..++|++ ++++||+||+|||++ ..+.+++++.+++++ +++++|.+.++
T Consensus 62 ~~~~------~---------~~~~~i~~~~~~~-~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~---~~ii~s~ts~~ 122 (292)
T PRK07530 62 EEAR------A---------AALARISTATDLE-DLADCDLVIEAATEDETVKRKIFAQLCPVLKP---EAILATNTSSI 122 (292)
T ss_pred HHHH------H---------HHHhCeEeeCCHH-HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 0000 0 0012467778885 478999999999974 577888999998887 78888877776
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcE-EE-EeCcchhHhhhccCceEEEE--eCChhHHHHHHHHhcCCCceEEecCC
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENI-LY-LGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v-~v-lsGPn~a~ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
... + +.+.+..+ .++ .. ..-|... ... ..++. ..+++..+.+.++|...|..+.+..|
T Consensus 123 ~~s-----------~-la~~~~~~-~r~~g~h~~~p~~~---~~~--vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d 184 (292)
T PRK07530 123 SIT-----------R-LASATDRP-ERFIGIHFMNPVPV---MKL--VELIRGIATDEATFEAAKEFVTKLGKTITVAED 184 (292)
T ss_pred CHH-----------H-HHhhcCCc-ccEEEeeccCCccc---Cce--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 543 2 44444322 222 11 1112221 111 12222 35678889999999999988777777
Q ss_pred hH
Q 012547 277 LV 278 (461)
Q Consensus 277 i~ 278 (461)
.-
T Consensus 185 ~p 186 (292)
T PRK07530 185 FP 186 (292)
T ss_pred cC
Confidence 54
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-10 Score=107.14 Aligned_cols=173 Identities=22% Similarity=0.310 Sum_probs=104.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (461)
||+|||+|.||..+|..++.+ | ++|++|+++++.++...+ .+...+.... + ...+..-.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~i~~~l~~~~-------~-~~~~~~~~------ 59 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-G-----YEVTLYDRSPEALERARK-RIERLLDRLV-------R-KGRLSQEE------ 59 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-T-----SEEEEE-SSHHHHHHHHH-HHHHHHHHHH-------H-TTTTTHHH------
T ss_pred CEEEEcCCHHHHHHHHHHHhC-C-----CcEEEEECChHHHHhhhh-HHHHHHhhhh-------h-hccchhhh------
Confidence 799999999999999999999 8 999999999988765432 1111111100 0 00111000
Q ss_pred ccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
+.. ...++.+++|++++. +||+||-|+|.. ..++++.+|..++.+ ++++.|.+.++..
T Consensus 60 ---~~~-------------~~~~i~~~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~---~~ilasnTSsl~i 119 (180)
T PF02737_consen 60 ---ADA-------------ALARISFTTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPP---DTILASNTSSLSI 119 (180)
T ss_dssp ---HHH-------------HHHTEEEESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-T---TSEEEE--SSS-H
T ss_pred ---hhh-------------hhhhcccccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCC---CceEEecCCCCCH
Confidence 000 012688999999877 999999999975 688999999999987 7988888877765
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEE--eCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCC
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vl--sGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
. + +...+..| .++..+ ..|-.. .....++.+ .+++..+.+.+++...|..+....|
T Consensus 120 ~-----------~-la~~~~~p-~R~ig~Hf~~P~~~-----~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 120 S-----------E-LAAALSRP-ERFIGMHFFNPPHL-----MPLVEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp H-----------H-HHTTSSTG-GGEEEEEE-SSTTT-------EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred H-----------H-HHhccCcC-ceEEEEeccccccc-----CceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 4 3 45555543 343211 223321 112222332 2567789999999988887766555
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-09 Score=110.30 Aligned_cols=176 Identities=18% Similarity=0.153 Sum_probs=111.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
..||+|||+|.||+.||..++.+ | ++|++|+++++.++.... .+...+..-. +. ...+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a-G-----~~V~l~D~~~~~~~~~~~-~i~~~~~~~~-------~~-~~~~~------ 65 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH-G-----LDVVAWDPAPGAEAALRA-NVANAWPALE-------RQ-GLAPG------ 65 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------Hc-CCChh------
Confidence 46899999999999999999999 8 999999999876654321 1111111000 00 00000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.....+..++++++++++||+||.|+|.. ..++++.++.+++++ +++|.|.|.|+
T Consensus 66 --------------------~~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~---~aIlaSnTS~l 122 (321)
T PRK07066 66 --------------------ASPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKP---DAIIASSTSGL 122 (321)
T ss_pred --------------------hHHhhceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCC---CeEEEECCCcc
Confidence 00125778889999999999999999975 577788999998887 67777766655
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEE--eCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEec-C
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN-G 275 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vl--sGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s-~ 275 (461)
... + +.+.+..| .++... ..|-+.. ....++.+ .+++..+.+.+++...|...... .
T Consensus 123 ~~s-----------~-la~~~~~p-~R~~g~HffnP~~~~-----pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~k 184 (321)
T PRK07066 123 LPT-----------D-FYARATHP-ERCVVGHPFNPVYLL-----PLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRK 184 (321)
T ss_pred CHH-----------H-HHHhcCCc-ccEEEEecCCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCC
Confidence 433 3 45555443 333221 2222211 11222222 35778899999999999766554 6
Q ss_pred ChHHH
Q 012547 276 DLVTH 280 (461)
Q Consensus 276 Di~gv 280 (461)
|.-|-
T Consensus 185 d~pGF 189 (321)
T PRK07066 185 EVPGF 189 (321)
T ss_pred CCccH
Confidence 76653
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-09 Score=105.84 Aligned_cols=200 Identities=16% Similarity=0.142 Sum_probs=122.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.++|++||.|+||.+|+..|.++ | |.|++|+|+.++.+.+.+.
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~-G-----~kVtV~dr~~~k~~~f~~~------------------------------- 77 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKA-G-----YKVTVYDRTKDKCKEFQEA------------------------------- 77 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHc-C-----CEEEEEeCcHHHHHHHHHh-------------------------------
Confidence 47999999999999999999999 8 9999999998766542110
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHHHHHHHhh---ccCCCCEEEEEee
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWK---ERITVPVIISLAK 198 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~~i~~~l~---~~~~~~iIIs~tk 198 (461)
+..+.+++.|+++++|+||.+||. .+.++++-.-...+. ++ ++..|.. .
T Consensus 78 ------------------------Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g--~~~~vDm-S 130 (327)
T KOG0409|consen 78 ------------------------GARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPG--KKATVDM-S 130 (327)
T ss_pred ------------------------chhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCC--CceEEec-c
Confidence 234457788999999999999994 577777644222222 21 1221322 2
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEE-EEeCChhHHHHHHHHhcCCCceEEecCCh
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANA-RICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~-~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
.+++. .+..|.+.... .....+-.|-.--.-+...-+++ ++++++...+....+|+..|.++..-..+
T Consensus 131 Tidp~---------~s~ei~~~i~~--~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~~G~~ 199 (327)
T KOG0409|consen 131 TIDPD---------TSLEIAKAISN--KGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVFLGGV 199 (327)
T ss_pred ccCHH---------HHHHHHHHHHh--CCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEEeccc
Confidence 44443 12223333321 11123334433221122122333 45788888999999999988766654432
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 278 VTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 278 ~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
=.-+-+++..|. -....-.++.|...|+..+|.++.++.+
T Consensus 200 GnG~~~Kl~nnm--------------~~g~~M~g~aEal~la~r~GLd~~~l~e 239 (327)
T KOG0409|consen 200 GNGQAAKLCNNM--------------LLGSSMVGLAEALALADRLGLDAKKLLE 239 (327)
T ss_pred CchHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 111222222222 2233335789999999999999988765
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-09 Score=108.40 Aligned_cols=180 Identities=17% Similarity=0.183 Sum_probs=111.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.||.+||..|+.. | ++|++|+++++.++...+ .+...+..-. .. ..+...
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~-G-----~~V~~~d~~~~~~~~~~~-~~~~~~~~~~-------~~-g~~~~~----- 63 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA-G-----MDVWLLDSDPAALSRGLD-SISSSLARLV-------KK-GKMSQE----- 63 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------Hc-CCCCHH-----
Confidence 36899999999999999999998 8 899999999877654221 1110010000 00 000000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC--chhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--STETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp--s~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.. .+ ....+.++++.+ ++++||+||+||| .+....++.++.+++++ +++++|.+.|+
T Consensus 64 --~~------~~---------~~~~~~~~~~~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~---~~il~s~tS~i 122 (295)
T PLN02545 64 --EA------DA---------TLGRIRCTTNLE-ELRDADFIIEAIVESEDLKKKLFSELDRICKP---SAILASNTSSI 122 (295)
T ss_pred --HH------HH---------HHhceEeeCCHH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCC---CcEEEECCCCC
Confidence 00 00 001355666764 5799999999999 67788889999988887 67888888887
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (461)
... .+++.+..+ .++. ...|..+... +....++.+ .+++..+.++++|...|..+.+..|..
T Consensus 123 ~~~------------~l~~~~~~~-~r~~-g~h~~~pp~~--~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~ 186 (295)
T PLN02545 123 SIT------------RLASATQRP-QQVI-GMHFMNPPPI--MKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYP 186 (295)
T ss_pred CHH------------HHHhhcCCC-cceE-EEeccCCccc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcc
Confidence 654 255554432 2321 1212222211 222222222 367788999999999998888777765
Q ss_pred H
Q 012547 279 T 279 (461)
Q Consensus 279 g 279 (461)
|
T Consensus 187 g 187 (295)
T PLN02545 187 G 187 (295)
T ss_pred c
Confidence 5
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.6e-10 Score=104.76 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=109.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
||+|+|+|+|++|+++|..|++. | |+|.+-+|+.+...+... .++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a-g-----~eV~igs~r~~~~~~a~a---------------------~~l~------- 46 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA-G-----HEVIIGSSRGPKALAAAA---------------------AALG------- 46 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC-C-----CeEEEecCCChhHHHHHH---------------------Hhhc-------
Confidence 58999999999999999999999 8 999999777654332100 0111
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
..+.. .++++|++.+|+||++||-.++.++++++...+. +++||+++|.+..
T Consensus 47 -----------------------~~i~~-~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~----~KIvID~tnp~~~ 98 (211)
T COG2085 47 -----------------------PLITG-GSNEDAAALADVVVLAVPFEAIPDVLAELRDALG----GKIVIDATNPIEV 98 (211)
T ss_pred -----------------------ccccc-CChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhC----CeEEEecCCCccc
Confidence 01222 3456788999999999999999999999998776 4799999998643
Q ss_pred cc---c--cccccCCHHHHHHhHhCCCCCcEE---EEeCcchhHhhhc--cCceEEEEeCC-hhHHHHHHHHhcCCCceE
Q 012547 203 EL---E--AVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYN--KEYANARICGA-EKWRKPLAKFLRRPHFTV 271 (461)
Q Consensus 203 ~~---~--~~~~~~~~se~i~~~lg~~~~~v~---vlsGPn~a~ev~~--g~~~~~~~~~~-~~~~~~l~~ll~~~g~~v 271 (461)
.. + ..+....-++.++++++.. +++ --..+........ +.+. +.+++| .+..+.+.++.+..||+.
T Consensus 99 ~~~~~~~~~~~~~~saae~va~~lp~a--kVVkAFn~i~a~~l~~~~~~~~~~~-v~vagDD~~Ak~~v~~L~~~iG~~~ 175 (211)
T COG2085 99 NGEPGDLYLVPSEGSAAEIVAKLLPGA--KVVKAFNTIPAAVLADLAKPGGRRD-VLVAGDDAEAKAVVAELAEDIGFRP 175 (211)
T ss_pred cCCccccccCCCCCcHHHHHHHHCCCc--chhhhhcccCHHHhccCCCcCCcee-EEEecCcHHHHHHHHHHHHhcCcce
Confidence 10 0 0123556789999988643 221 0011111111111 1222 234554 556788889988889886
Q ss_pred E
Q 012547 272 W 272 (461)
Q Consensus 272 ~ 272 (461)
.
T Consensus 176 l 176 (211)
T COG2085 176 L 176 (211)
T ss_pred e
Confidence 4
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.5e-10 Score=117.25 Aligned_cols=200 Identities=15% Similarity=0.054 Sum_probs=123.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (461)
+|+|||.|.||.+||..|+++ | ++|.+|+|++++++.+.+ . +..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-G-----~~V~v~drt~~~~~~l~~--------~-------------~~~g-------- 45 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-G-----FTVSVYNRTPEKTDEFLA--------E-------------HAKG-------- 45 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHh--------h-------------ccCC--------
Confidence 489999999999999999999 8 999999999987664221 1 0000
Q ss_pred ccchhhhhhhcccccCCCCCCCCeEEecCHHHHh---cCCCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV---WDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av---~~aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
..+...+++++++ +.+|+||++||+ ..++++++++.+++.+ +++||.++++.
T Consensus 46 ---------------------~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~---g~iIID~gns~ 101 (467)
T TIGR00873 46 ---------------------KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEK---GDIIIDGGNSH 101 (467)
T ss_pred ---------------------CCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCC---CCEEEECCCcC
Confidence 0122334455544 578999999998 7899999999999887 68899888776
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceE------Eec
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTV------WDN 274 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v------~~s 274 (461)
...+ .. ..+.+.+ .|.......+..||.-|+ .| + .++++++++..+.++.+|..-+-++ .+.
T Consensus 102 ~~~t-----~~-~~~~l~~-~gi~fvdapVsGG~~gA~---~G-~-~im~GG~~~a~~~~~p~L~~ia~~~~~~~~~~~~ 169 (467)
T TIGR00873 102 YPDT-----ER-RYKELKA-KGILFVGSGVSGGEEGAR---KG-P-SIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWI 169 (467)
T ss_pred HHHH-----HH-HHHHHHh-cCCEEEcCCCCCCHHHHh---cC-C-cCCCCCCHHHHHHHHHHHHHHhhhcCCCCceEEE
Confidence 5442 11 1111211 121111112333443333 33 3 3457888888888988887644332 222
Q ss_pred CChHHH-HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHH-HhCCCchhhc
Q 012547 275 GDLVTH-EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITH-LLAEEPEKLA 330 (461)
Q Consensus 275 ~Di~gv-e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~-a~G~~~~t~~ 330 (461)
.+. |. -..+.+-|. -...+.+++.|...|++ ..|.+++.+.
T Consensus 170 G~~-GsG~~vKmvhN~--------------i~~~~m~~~aEa~~ll~~~~g~~~~~l~ 212 (467)
T TIGR00873 170 GPD-GAGHYVKMVHNG--------------IEYGDMQLICEAYDILKDGLGLSNEEIA 212 (467)
T ss_pred CCc-CHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 221 21 122222222 22344568899999885 6898876653
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-10 Score=111.61 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=98.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.||+++|..|+++ | ++|.+|+++++.++.+.. . +.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~-g-----~~V~~~d~~~~~~~~a~~--------~----------------g~------ 44 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL-G-----HTVYGVSRRESTCERAIE--------R----------------GL------ 44 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHH--------C----------------CC------
Confidence 6899999999999999999998 8 899999999865543110 0 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
....+++. +++++||+||+|+|.+.+.++++++.+++++ ++ +|+-+.++...
T Consensus 45 -----------------------~~~~~~~~-~~~~~aDlVilavp~~~~~~~~~~l~~~l~~---~~-ii~d~~Svk~~ 96 (279)
T PRK07417 45 -----------------------VDEASTDL-SLLKDCDLVILALPIGLLLPPSEQLIPALPP---EA-IVTDVGSVKAP 96 (279)
T ss_pred -----------------------cccccCCH-hHhcCCCEEEEcCCHHHHHHHHHHHHHhCCC---Cc-EEEeCcchHHH
Confidence 00123444 3578999999999999999999999998876 55 44555455432
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcch-----hH-hhhccCceEEEE--eCChhHHHHHHHHhcCCCceEEecC
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNI-----AS-EIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~-----a~-ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
..+.+.+... .....-.+.||.. +. .+..+.+..++. ..+++..+.++++++..|.+++..+
T Consensus 97 ---------~~~~~~~~~~-~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~ 166 (279)
T PRK07417 97 ---------IVEAWEKLHP-RFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTAD 166 (279)
T ss_pred ---------HHHHHHHhhC-CceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 1122222211 0000012334331 11 123444333333 2356678889999999998876544
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.9e-10 Score=116.40 Aligned_cols=156 Identities=21% Similarity=0.327 Sum_probs=108.3
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+||| +|.||+++|..|... | ++|++|+|+++.++... ..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~-G-----~~V~v~~r~~~~~~~~a--------~~----------------------- 43 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK-G-----FEVIVTGRDPKKGKEVA--------KE----------------------- 43 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC-C-----CEEEEEECChHHHHHHH--------HH-----------------------
Confidence 7999998 799999999999998 8 89999999876432210 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
+ ++.+++++++++.++|+||+|||.+.+.++++++.+++++ ++++++++. +..
T Consensus 44 ---~--------------------gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~---~~iViDvsS-vK~ 96 (437)
T PRK08655 44 ---L--------------------GVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAPHVKE---GSLLMDVTS-VKE 96 (437)
T ss_pred ---c--------------------CCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCC---CCEEEEccc-ccH
Confidence 0 2345567778889999999999999999999999998887 688887763 111
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEE---EEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecC
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~---vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
.+.+.+.+.++.. ..++ .+.||+.+. ..+.....+.. .+++..+.++++|+..|.+++..+
T Consensus 97 ---------~~~~~l~~~~~~~-~~~V~~HPmaGp~~~~--~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~ 162 (437)
T PRK08655 97 ---------RPVEAMEEYAPEG-VEILPTHPMFGPRTPS--LKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTS 162 (437)
T ss_pred ---------HHHHHHHHhcCCC-CEEEEcCCCCCCCCcc--cCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 1234566655421 1211 234566542 34443332322 346778999999999999988654
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=115.26 Aligned_cols=179 Identities=18% Similarity=0.196 Sum_probs=111.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
...||+|||+|.||+.||..++.+ | ++|++|+++++.++.... ++...++... .+. .+....
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a-G-----~~V~l~d~~~e~l~~~~~-~i~~~l~~~~------~~G--~~~~~~--- 65 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA-G-----HQVLLYDIRAEALARAIA-GIEARLNSLV------TKG--KLTAEE--- 65 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH------hcC--CCCHHH---
Confidence 346899999999999999999999 8 999999999988765321 1111111100 000 010000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc--hhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--TETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps--~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
++ ..+.++..++|+++ +.+||+||.|+|. ...+.++.++.+++++ ++++.|.+.+
T Consensus 66 ------~~-------------~~~~~i~~~~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~---~~IlasnTSt 122 (503)
T TIGR02279 66 ------CE-------------RTLKRLIPVTDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPA---DTIIASNTSS 122 (503)
T ss_pred ------HH-------------HHHhccEEeCCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEECCCC
Confidence 00 01125788899965 6799999999997 4566778888888887 6776666655
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEE--EEeCcchhHhhhccCceEEEEeC---ChhHHHHHHHHhcCCCceEEec
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDN 274 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~--vlsGPn~a~ev~~g~~~~~~~~~---~~~~~~~l~~ll~~~g~~v~~s 274 (461)
++.. + +.+.+..+ .++. -...|.... .... ++.+ +++..+.+.+++...|..+...
T Consensus 123 l~i~-----------~-iA~~~~~p-~r~~G~HFf~Papv~-----~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~pv~v 183 (503)
T TIGR02279 123 LSIT-----------A-IAAGLARP-ERVAGLHFFNPAPVM-----ALVE-VVSGLATAAEVAEQLYETALAWGKQPVHC 183 (503)
T ss_pred CCHH-----------H-HHHhcCcc-cceEEEeccCccccC-----ceEE-EeCCCCCCHHHHHHHHHHHHHcCCeeeEe
Confidence 5543 2 44555433 2211 111221111 1121 3344 6788899999999988887777
Q ss_pred CChHHH
Q 012547 275 GDLVTH 280 (461)
Q Consensus 275 ~Di~gv 280 (461)
.|.-|-
T Consensus 184 ~d~pGf 189 (503)
T TIGR02279 184 HSTPGF 189 (503)
T ss_pred CCCCCc
Confidence 776553
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-09 Score=107.11 Aligned_cols=161 Identities=15% Similarity=0.198 Sum_probs=97.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.||+++|..|.++ |+ ..+|+.|+|+++.++... . . +
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~-g~---~~~v~~~d~~~~~~~~~~---------~--------------~-g------- 45 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK-GL---ISKVYGYDHNELHLKKAL---------E--------------L-G------- 45 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc-CC---CCEEEEEcCCHHHHHHHH---------H--------------C-C-------
Confidence 6899999999999999999988 72 137888898876544210 0 0 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
-+....+++++. ++|+||+|||++.+.++++++.+ +++ +++|+.+ |....
T Consensus 46 -----------------------~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~~-l~~---~~iv~d~--gs~k~ 95 (275)
T PRK08507 46 -----------------------LVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLLD-IKE---NTTIIDL--GSTKA 95 (275)
T ss_pred -----------------------CCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHhc-cCC---CCEEEEC--ccchH
Confidence 011123555644 59999999999999999999998 776 6777653 22211
Q ss_pred cccccccCCHHHHHHhHhCCC---CCcEE--EEeCcchhH-hhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecC
Q 012547 204 LEAVPRIITPTQMINRATGVP---IENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~---~~~v~--vlsGPn~a~-ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
.+.+.+.+..+.. .++.+ -.+||..+. ....|.....+.. .+++..+.+.++|+..|.++...+
T Consensus 96 --------~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~ 167 (275)
T PRK08507 96 --------KIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMD 167 (275)
T ss_pred --------HHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 1223333321110 01110 112343332 2334544333322 345678899999999998877666
Q ss_pred Ch
Q 012547 276 DL 277 (461)
Q Consensus 276 Di 277 (461)
.-
T Consensus 168 ~~ 169 (275)
T PRK08507 168 AK 169 (275)
T ss_pred HH
Confidence 43
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-09 Score=107.38 Aligned_cols=166 Identities=21% Similarity=0.160 Sum_probs=102.4
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
..-..+||+|||+|.||.++|..|.+. |+ .++|++|+|+++.++.+. . . +.
T Consensus 2 ~~~~~~~I~IIG~G~mG~sla~~l~~~-g~---~~~V~~~dr~~~~~~~a~---------~--------------~-g~- 52 (307)
T PRK07502 2 SAPLFDRVALIGIGLIGSSLARAIRRL-GL---AGEIVGADRSAETRARAR---------E--------------L-GL- 52 (307)
T ss_pred CccCCcEEEEEeeCHHHHHHHHHHHhc-CC---CcEEEEEECCHHHHHHHH---------h--------------C-CC-
Confidence 333457999999999999999999988 72 148999999986544211 0 0 00
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
....+.+++++++++|+||+|+|+..+.++++++.+++++ +++|+ ...
T Consensus 53 ----------------------------~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~---~~iv~-dvg 100 (307)
T PRK07502 53 ----------------------------GDRVTTSAAEAVKGADLVILCVPVGASGAVAAEIAPHLKP---GAIVT-DVG 100 (307)
T ss_pred ----------------------------CceecCCHHHHhcCCCEEEECCCHHHHHHHHHHHHhhCCC---CCEEE-eCc
Confidence 1123456667788999999999999999999999988876 55544 333
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEE---EE-----eCcchhH-hhhccCceEEEE--eCChhHHHHHHHHhcCC
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENIL---YL-----GGPNIAS-EIYNKEYANARI--CGAEKWRKPLAKFLRRP 267 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~---vl-----sGPn~a~-ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~ 267 (461)
++... +.+.+.+.++. ..++. .+ +||..+. ++..|.+..++. +.+++..+.+.++|+..
T Consensus 101 s~k~~---------~~~~~~~~~~~-~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~l 170 (307)
T PRK07502 101 SVKAS---------VIAAMAPHLPE-GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRAL 170 (307)
T ss_pred cchHH---------HHHHHHHhCCC-CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 33222 11223333321 11111 11 2333221 333444333332 23566788899999999
Q ss_pred CceEEecC
Q 012547 268 HFTVWDNG 275 (461)
Q Consensus 268 g~~v~~s~ 275 (461)
|.+++..+
T Consensus 171 G~~~~~~~ 178 (307)
T PRK07502 171 GARVEEMD 178 (307)
T ss_pred CCEEEEcC
Confidence 98876643
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=8e-09 Score=103.64 Aligned_cols=179 Identities=18% Similarity=0.167 Sum_probs=109.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+.||+|||+|.||..||..++.+ | ++|++|+++++.++.... ++...++... .+. .+...
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~~~~~~~-~i~~~~~~~~------~~g--~~~~~----- 64 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA-G-----VDVLVFETTEELATAGRN-RIEKSLERAV------SRG--KLTER----- 64 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHH-HHHHHHHHHH------hcc--cCChh-----
Confidence 35899999999999999999999 8 999999999988765321 2221211110 000 01000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHh-hccCCCCEEEEEeec
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYW-KERITVPVIISLAKG 199 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l-~~~~~~~iIIs~tkG 199 (461)
.. +..+..++.++|++ ++++||+||.|+|.+ ..+.++.++..++ ++ +++++|.+.+
T Consensus 65 --~~---------------~~~~~~l~~~~~~~-~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~---~~il~snTS~ 123 (286)
T PRK07819 65 --ER---------------DAALARLRFTTDLG-DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDP---DAVLASNTSS 123 (286)
T ss_pred --hH---------------HHHHhCeEeeCCHH-HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 00 00113678889994 589999999999975 5667788888888 66 7888887766
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEE--EEeCcchhHhhhccCceEEEE--eCChhHHHHHHHHhc-CCCceEEec
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLR-RPHFTVWDN 274 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~--vlsGPn~a~ev~~g~~~~~~~--~~~~~~~~~l~~ll~-~~g~~v~~s 274 (461)
+... .+......+ .++. -...|... .. ...++. ..+++..+.+..++. ..+..+...
T Consensus 124 ~~~~------------~la~~~~~~-~r~~g~hf~~P~~~---~~--lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v 185 (286)
T PRK07819 124 IPIM------------KLAAATKRP-GRVLGLHFFNPVPV---LP--LVELVPTLVTSEATVARAEEFASDVLGKQVVRA 185 (286)
T ss_pred CCHH------------HHHhhcCCC-ccEEEEecCCCccc---Cc--eEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEe
Confidence 6554 244444432 2321 11222211 11 112232 346778888888866 466665555
Q ss_pred CChHHH
Q 012547 275 GDLVTH 280 (461)
Q Consensus 275 ~Di~gv 280 (461)
.|.-|-
T Consensus 186 ~d~pGf 191 (286)
T PRK07819 186 QDRSGF 191 (286)
T ss_pred cCCCCh
Confidence 665443
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=110.42 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=110.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
...||+|||+|.||..||..++.+ | ++|++|+++++.++...+ ++.+.++.... +. .+...
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a-G-----~~V~l~D~~~e~l~~~~~-~i~~~l~~~~~------~G--~~~~~---- 66 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA-G-----HTVLLYDARAGAAAAARD-GIAARLAKLVE------KG--KLTAE---- 66 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHHH------cC--CCCHH----
Confidence 346899999999999999999999 8 999999999988775321 11111111000 00 01000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
. .+..+..+..++|+++ +.+||+||.|||.. ..+.++.++..++++ ++++.|.+.+
T Consensus 67 ---~---------------~~~~~~~i~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~---~ailasntSt 124 (507)
T PRK08268 67 ---Q---------------ADAALARLRPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSP---DCILATNTSS 124 (507)
T ss_pred ---H---------------HHHHHhCeEEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0 0001135788889876 67999999999974 455667888887776 6777677766
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEE--EEeCcchhHhhhccCceEEEEe---CChhHHHHHHHHhcCCCceEEec
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARIC---GAEKWRKPLAKFLRRPHFTVWDN 274 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~--vlsGPn~a~ev~~g~~~~~~~~---~~~~~~~~l~~ll~~~g~~v~~s 274 (461)
+++. + +.+.+..+ .++. -...|.... .... ++. .+++..+.+..++...+..+...
T Consensus 125 l~i~-----------~-la~~~~~p-~r~~G~hff~Pa~v~-----~LvE-vv~g~~Ts~~~~~~~~~l~~~lgk~pv~v 185 (507)
T PRK08268 125 LSIT-----------A-IAAALKHP-ERVAGLHFFNPVPLM-----KLVE-VVSGLATDPAVADALYALARAWGKTPVRA 185 (507)
T ss_pred CCHH-----------H-HHhhcCCc-ccEEEEeecCCcccC-----eeEE-EeCCCCCCHHHHHHHHHHHHHcCCceEEe
Confidence 6553 2 55555433 2211 112222211 1222 232 36778888999998888777666
Q ss_pred CChHH
Q 012547 275 GDLVT 279 (461)
Q Consensus 275 ~Di~g 279 (461)
.|.-|
T Consensus 186 ~d~pG 190 (507)
T PRK08268 186 KDTPG 190 (507)
T ss_pred cCCCC
Confidence 77655
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.1e-09 Score=105.41 Aligned_cols=170 Identities=15% Similarity=0.130 Sum_probs=112.2
Q ss_pred hhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhh
Q 012547 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (461)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (461)
..|.||.|== .+.+.|+|+|||+|.||.++|..|.+. | ++|.+|+++... +. ...
T Consensus 22 ~~~~~~~~~~-----~~~~~~kI~IIG~G~mG~slA~~L~~~-G-----~~V~~~d~~~~~-~~---------a~~---- 76 (304)
T PLN02256 22 DYESRLQEEL-----EKSRKLKIGIVGFGNFGQFLAKTFVKQ-G-----HTVLATSRSDYS-DI---------AAE---- 76 (304)
T ss_pred ChHhHHhHhh-----ccCCCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEECccHH-HH---------HHH----
Confidence 3566666532 233568999999999999999999988 7 899999988531 10 000
Q ss_pred HHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh-cCCCEEEEcCCchhHHHHHHHH-H
Q 012547 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEI-S 181 (461)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av-~~aDiIIiaVps~~~~~vl~~i-~ 181 (461)
. ++...++.++++ .++|+||+|||++.+.++++++ .
T Consensus 77 ----------~--------------------------------gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l~~ 114 (304)
T PLN02256 77 ----------L--------------------------------GVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSLPL 114 (304)
T ss_pred ----------c--------------------------------CCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhhhh
Confidence 0 123345666665 4799999999999999999998 5
Q ss_pred HHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhcc----CceEEEE------e
Q 012547 182 RYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARI------C 251 (461)
Q Consensus 182 ~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g----~~~~~~~------~ 251 (461)
+++++ +++|++++.+=.. +.+.+.+.++.. .+ .+...|.+..+.+.+ .+.+... .
T Consensus 115 ~~l~~---~~iviDv~SvK~~----------~~~~~~~~l~~~-~~-~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~ 179 (304)
T PLN02256 115 QRLKR---STLFVDVLSVKEF----------PKNLLLQVLPEE-FD-ILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEG 179 (304)
T ss_pred hccCC---CCEEEecCCchHH----------HHHHHHHhCCCC-Ce-EEecCCCCCCCCCccccCCCeEEEecceecCCC
Confidence 66776 6888877752111 124466666421 22 466778887775532 2211111 1
Q ss_pred CChhHHHHHHHHhcCCCceEEecC
Q 012547 252 GAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 252 ~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
.+++..+.+.+++...|-++...+
T Consensus 180 ~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 180 EREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEeC
Confidence 145667889999998888776554
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.8e-09 Score=104.22 Aligned_cols=181 Identities=19% Similarity=0.202 Sum_probs=113.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.||+.+|..+|.. | ++|++++++++.+++.... +...+++.. .. -.+....
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~-G-----~~V~l~D~~~~~~~~~~~~-i~~~l~k~~-------~~-g~l~~~~---- 63 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA-G-----YDVVLKDISPEALERALAY-IEKNLEKLV-------EK-GKLTEEE---- 63 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc-C-----CceEEEeCCHHHHHHHHHH-HHHHHHHHH-------hc-CCCChhh----
Confidence 47999999999999999999997 8 9999999998877654321 111111100 00 0111100
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+..+..+..++|+. ++++||+||.+|+.. ..++++.++..++++ ++++-|.|.++
T Consensus 64 ------------------~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~---~aIlASNTSsl 121 (307)
T COG1250 64 ------------------ADAALARITPTTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKP---DAILASNTSSL 121 (307)
T ss_pred ------------------HHHHHhhccccCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCC---CcEEeeccCCC
Confidence 001123677788886 689999999999975 688999999999988 78998888887
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (461)
+.. + +.+.+..| .++..+ .|-..+..-....++.+ .+++..+.+.++..+-+..+....|.-
T Consensus 122 ~it-----------~-ia~~~~rp-er~iG~---HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~p 185 (307)
T COG1250 122 SIT-----------E-LAEALKRP-ERFIGL---HFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVP 185 (307)
T ss_pred CHH-----------H-HHHHhCCc-hhEEEE---eccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCC
Confidence 765 3 55555543 343211 22111111111222222 246778888888877775545556665
Q ss_pred HH
Q 012547 279 TH 280 (461)
Q Consensus 279 gv 280 (461)
|-
T Consensus 186 GF 187 (307)
T COG1250 186 GF 187 (307)
T ss_pred ce
Confidence 53
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.5e-09 Score=106.25 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=102.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||+|.||+++|..|.++ | ++|.+|+++++..+.. .. .+.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~-G-----~~v~i~~~~~~~~~~~---------~a---------------~~~------ 44 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA-G-----PDVFIIGYDPSAAQLA---------RA---------------LGF------ 44 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc-C-----CCeEEEEeCCCHHHHH---------HH---------------hcC------
Confidence 4799999999999999999998 8 8999999987643210 00 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH-hhccCCCCEEEEEeecCcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVEA 202 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~-l~~~~~~~iIIs~tkGi~~ 202 (461)
++ .-..++++++++++||+||+|||++.+.++++++.+. +++ ++ +|+.+.++..
T Consensus 45 ---------------~~------~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l~~~~l~~---~~-ivtDv~SvK~ 99 (359)
T PRK06545 45 ---------------GV------IDELAADLQRAAAEADLIVLAVPVDATAALLAELADLELKP---GV-IVTDVGSVKG 99 (359)
T ss_pred ---------------CC------CcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhcCCCC---Cc-EEEeCccccH
Confidence 00 0123467788889999999999999999999999873 665 44 5554545433
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEE--------EEeCcchhH-hhhccCceEEEEe--CChhHHHHHHHHhcCCCceE
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENIL--------YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTV 271 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~--------vlsGPn~a~-ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v 271 (461)
. +.+.+++.++.. .++. ..+||..+. ++..+.+..++.. .+++..+.++++|+..|.++
T Consensus 100 ~---------i~~~~~~~~~~~-~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~ 169 (359)
T PRK06545 100 A---------ILAEAEALLGDL-IRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKF 169 (359)
T ss_pred H---------HHHHHHHhcCCC-CeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence 2 123334432211 1111 123333333 4455654444432 35677889999999999877
Q ss_pred Eec
Q 012547 272 WDN 274 (461)
Q Consensus 272 ~~s 274 (461)
+..
T Consensus 170 v~~ 172 (359)
T PRK06545 170 VVL 172 (359)
T ss_pred EEC
Confidence 543
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-08 Score=113.16 Aligned_cols=180 Identities=13% Similarity=0.114 Sum_probs=117.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.||+|||+|.||..||..++.+ | ++|++++++++.++.... ++...+.... .+. .+...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l~~~~------~~g--~~~~~------ 372 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-G-----VPVIMKDINQKALDLGMT-EAAKLLNKQV------ERG--KIDGA------ 372 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH------HcC--CCChh------
Confidence 6899999999999999999999 8 999999999987764321 1111111110 000 01100
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
. + +.....++.++|++ ++++||+||.|||.+ ..++++.++.+++++ ++++.|.|.+++
T Consensus 373 -~--~-------------~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasNTSsl~ 432 (715)
T PRK11730 373 -K--M-------------AGVLSSIRPTLDYA-GFERVDVVVEAVVENPKVKAAVLAEVEQKVRE---DTILASNTSTIS 432 (715)
T ss_pred -h--H-------------HHHHhCeEEeCCHH-HhcCCCEEEecccCcHHHHHHHHHHHHhhCCC---CcEEEEcCCCCC
Confidence 0 0 00123688899985 579999999999975 788999999999998 788888887776
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEE--eCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCCh
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vl--sGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
.. + |.+.+..| .++..+ ..|-. .-....++.+ .+++..+.+.+++...|..+....|.
T Consensus 433 i~-----------~-la~~~~~p-~r~~g~Hff~P~~-----~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~ 494 (715)
T PRK11730 433 IS-----------L-LAKALKRP-ENFCGMHFFNPVH-----RMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDC 494 (715)
T ss_pred HH-----------H-HHhhcCCC-ccEEEEecCCccc-----ccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCc
Confidence 54 3 55555543 333221 22221 1111222222 25677888888888888877777887
Q ss_pred HHHHH
Q 012547 278 VTHEV 282 (461)
Q Consensus 278 ~gve~ 282 (461)
-|-..
T Consensus 495 pGfv~ 499 (715)
T PRK11730 495 PGFFV 499 (715)
T ss_pred CchhH
Confidence 76433
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-08 Score=98.23 Aligned_cols=194 Identities=14% Similarity=0.085 Sum_probs=131.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
++||+-||||.+|+.-...+|.. ||...|++++.+..+..+||.+. -|.|.|++.
T Consensus 1 ~~kiccigagyvggptcavia~k----cp~i~vtvvd~s~~ri~~wnsd~-----------------lpiyepgld---- 55 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALK----CPDIEVTVVDISVPRINAWNSDK-----------------LPIYEPGLD---- 55 (481)
T ss_pred CceEEEecCcccCCcchheeeec----CCceEEEEEecCchHhhcccCCC-----------------CcccCCCHH----
Confidence 47999999999999988888855 45578999999998887766543 367888753
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cc-------------hhHHHHHHHHHHHhhcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS-------------TETKEVFEEISRYWKER 187 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps-------------~~~~~vl~~i~~~l~~~ 187 (461)
|+|.+-. ..++.+++|.+.++++||+||+.| |. .+.+++.+.|+.+-..
T Consensus 56 -------evv~~cr--------gknlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~- 119 (481)
T KOG2666|consen 56 -------EVVKQCR--------GKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVS- 119 (481)
T ss_pred -------HHHHHhc--------CCceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccC-
Confidence 4555421 136789999999999999999987 33 2688888888876543
Q ss_pred CCCCEEEEEeecCccccccccccCCHHHHHHhHhCC--CCCcEEEEeCcchhHhhhcc----CceEEEEeCC--h---hH
Q 012547 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGV--PIENILYLGGPNIASEIYNK----EYANARICGA--E---KW 256 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~--~~~~v~vlsGPn~a~ev~~g----~~~~~~~~~~--~---~~ 256 (461)
++++ +-|...+- .-.|.|.+.+.. +...+-+++.|.|..|...- +|..+.+++. + +.
T Consensus 120 --~kiv--vekstvpv--------~aaesi~~il~~n~~~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~a 187 (481)
T KOG2666|consen 120 --DKIV--VEKSTVPV--------KAAESIEKILNHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQA 187 (481)
T ss_pred --CeEE--Eeeccccc--------hHHHHHHHHHhcCCCCceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHH
Confidence 4433 44554443 123556665531 23456789999998875532 3555666653 2 34
Q ss_pred HHHHHHHhcCCCc-eEEecCChHHHHHHHHHHHH
Q 012547 257 RKPLAKFLRRPHF-TVWDNGDLVTHEVMGGLKNV 289 (461)
Q Consensus 257 ~~~l~~ll~~~g~-~v~~s~Di~gve~~galKNv 289 (461)
.+.+..++...-- .-.++++.+..|+.++..|.
T Consensus 188 v~~l~~vyehwvp~~~iittntwsselsklaana 221 (481)
T KOG2666|consen 188 VQALKDVYEHWVPREQIITTNTWSSELSKLAANA 221 (481)
T ss_pred HHHHHHHHHhhCcccceeeccccHHHHHHHHHHH
Confidence 5666666654221 12356777888998877776
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.5e-08 Score=109.45 Aligned_cols=183 Identities=16% Similarity=0.186 Sum_probs=116.6
Q ss_pred CceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..||+|||+|.||+.||..++ .+ | ++|++++.+++.++.... .+...+.... +. ..+..-.
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l~~~~-------~~-~~~~~~~--- 365 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKA-G-----IPVRIKDINPQGINNALK-YAWKLLDKGV-------KR-RHMTPAE--- 365 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------Hc-CCCCHHH---
Confidence 368999999999999999998 57 8 999999999887665321 1111111100 00 0011000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
+ +.....++.++|++ ++++||+||.|||.. ..++++.++.+++++ ++++.|.|.+
T Consensus 366 ------~-------------~~~~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~---~~ilasnTS~ 422 (699)
T TIGR02440 366 ------R-------------DNQMALITGTTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAA---HTIFASNTSS 422 (699)
T ss_pred ------H-------------HHHHcCeEEeCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCC---CcEEEeCCCC
Confidence 0 00113688889985 589999999999975 678899999999988 7888888877
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCCh
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
++.. + |.+.+..| .++..+ .|......-....++.+ .+++..+.+.+++...|.......|.
T Consensus 423 l~i~-----------~-la~~~~~p-~r~~g~---HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~ 486 (699)
T TIGR02440 423 LPIG-----------Q-IAAAASRP-ENVIGL---HYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADK 486 (699)
T ss_pred CCHH-----------H-HHHhcCCc-ccEEEE---ecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccc
Confidence 7664 3 55555443 343221 22111111112222222 35678888999999888887777887
Q ss_pred HHHHH
Q 012547 278 VTHEV 282 (461)
Q Consensus 278 ~gve~ 282 (461)
-|-..
T Consensus 487 pGfi~ 491 (699)
T TIGR02440 487 AGFYV 491 (699)
T ss_pred cchHH
Confidence 66433
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-08 Score=110.14 Aligned_cols=181 Identities=15% Similarity=0.170 Sum_probs=114.6
Q ss_pred CceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..||+|||+|.||..||..++ .+ | ++|++++++++.++.... .+.+.+.... +. ..+....
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l~~~~-------~~-~~~~~~~--- 370 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA-G-----LPVRIKDINPQGINHALK-YSWDLLDKKV-------KR-RHLKPSE--- 370 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------Hc-CCCCHHH---
Confidence 378999999999999999999 77 8 999999999887664321 1111111100 00 0011000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
+ +.....+..++|++ ++++||+||.|||.+ ..++++.++.+++++ ++++.|.|.+
T Consensus 371 ------~-------------~~~~~~i~~~~~~~-~~~~aDlViEav~E~~~~K~~v~~~le~~~~~---~~ilasnTS~ 427 (708)
T PRK11154 371 ------R-------------DKQMALISGTTDYR-GFKHADVVIEAVFEDLALKQQMVAEVEQNCAP---HTIFASNTSS 427 (708)
T ss_pred ------H-------------HHHHhcEEEeCChH-HhccCCEEeecccccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0 00123688899984 689999999999975 688999999999998 7888888877
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCCh
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
++.. + |.+.+..| .++..+ .|......-....++.+ .+++..+.+.+++...|.......|.
T Consensus 428 l~i~-----------~-la~~~~~p-~r~ig~---Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~ 491 (708)
T PRK11154 428 LPIG-----------Q-IAAAAARP-EQVIGL---HYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDG 491 (708)
T ss_pred CCHH-----------H-HHHhcCcc-cceEEE---ecCCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEecc
Confidence 7654 3 55555443 333222 12111111112222322 35677888888888888866666776
Q ss_pred HHH
Q 012547 278 VTH 280 (461)
Q Consensus 278 ~gv 280 (461)
-|-
T Consensus 492 pGf 494 (708)
T PRK11154 492 AGF 494 (708)
T ss_pred CcH
Confidence 554
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.9e-08 Score=109.35 Aligned_cols=181 Identities=13% Similarity=0.105 Sum_probs=116.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
..||+|||+|.||..||..++.+ | ++|++++++++.+++..+ .+...++... ....+...
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~~~~~~--------~~g~~~~~----- 372 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK-G-----TPIVMKDINQHSLDLGLT-EAAKLLNKQV--------ERGRITPA----- 372 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH--------HcCCCChh-----
Confidence 46899999999999999999999 8 999999999988765321 1111111110 00001100
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
. .+.....++.++|++ ++++||+||.|||.+ ..++++.++.+++++ ++++.|.|.++
T Consensus 373 --~---------------~~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasnTS~l 431 (714)
T TIGR02437 373 --K---------------MAGVLNGITPTLSYA-GFDNVDIVVEAVVENPKVKAAVLAEVEQHVRE---DAILASNTSTI 431 (714)
T ss_pred --h---------------HHHHHhCeEEeCCHH-HhcCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCCCC
Confidence 0 000123688889985 579999999999975 688999999999998 78888888776
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (461)
+.. + |.+.+..| .++..+ .|......-....++.+ .+++..+.+.+++...|.......|.-
T Consensus 432 ~i~-----------~-ia~~~~~p-~r~ig~---Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p 495 (714)
T TIGR02437 432 SIS-----------L-LAKALKRP-ENFCGM---HFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCP 495 (714)
T ss_pred CHH-----------H-HHhhcCCc-ccEEEE---ecCCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcc
Confidence 654 3 55555543 333221 22111111111222222 356778888888888888777777876
Q ss_pred HH
Q 012547 279 TH 280 (461)
Q Consensus 279 gv 280 (461)
|-
T Consensus 496 Gf 497 (714)
T TIGR02437 496 GF 497 (714)
T ss_pred cc
Confidence 64
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.4e-08 Score=109.31 Aligned_cols=181 Identities=16% Similarity=0.155 Sum_probs=117.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
..+|+|||+|.||..||..++.+ | ++|++++++++.+++... ++.+.+.... ++ ..+....
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~i~~~l~~~~------~~--g~~~~~~---- 395 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDK-G-----LKTVLKDATPAGLDRGQQ-QVFKGLNKKV------KR--KKITSLE---- 395 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhC-C-----CcEEEecCCHHHHHHHHH-HHHHHHHHHH------Hc--CCCCHHH----
Confidence 46899999999999999999999 8 999999999988775321 1111111110 00 0111000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
. +.....+..++|++ ++++||+||.|||.+ ..++++.++.+++++ ++++.|.|.++
T Consensus 396 -----~-------------~~~~~~i~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~---~~ilasNTSsl 453 (737)
T TIGR02441 396 -----R-------------DSILSNLTPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPP---HCIIASNTSAL 453 (737)
T ss_pred -----H-------------HHHHhCeEEeCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 0 00123688889996 579999999999975 688999999999998 78888888777
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (461)
+.. + |.+.+..| .++..+ .|......-....++.+ .+++..+.+.+++...|....+..|.-
T Consensus 454 ~i~-----------~-la~~~~~p-~r~ig~---Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p 517 (737)
T TIGR02441 454 PIK-----------D-IAAVSSRP-EKVIGM---HYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGP 517 (737)
T ss_pred CHH-----------H-HHhhcCCc-cceEEE---eccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcC
Confidence 654 3 55556544 333221 22111111112222222 356778888888888888777778876
Q ss_pred HH
Q 012547 279 TH 280 (461)
Q Consensus 279 gv 280 (461)
|-
T Consensus 518 GF 519 (737)
T TIGR02441 518 GF 519 (737)
T ss_pred Cc
Confidence 64
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.9e-09 Score=94.38 Aligned_cols=93 Identities=27% Similarity=0.494 Sum_probs=60.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEE-EecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l-~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
..|||+|||+|.+|++++..|.++ | +.|.- |+|+.+..+... .+++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a-g-----~~v~~v~srs~~sa~~a~----------------------~~~~----- 55 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA-G-----HEVVGVYSRSPASAERAA----------------------AFIG----- 55 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT-T-----SEEEEESSCHH-HHHHHH----------------------C--T-----
T ss_pred CccEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCcccccccc----------------------cccc-----
Confidence 358999999999999999999999 8 77764 567664433210 1111
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH--hhccCCCCEEEEEe
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY--WKERITVPVIISLA 197 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~--l~~~~~~~iIIs~t 197 (461)
.. ...++.+.+.++|++|++||.+.+.+++++|..+ +.+ +++|+.++
T Consensus 56 --------------------------~~-~~~~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~---g~iVvHtS 104 (127)
T PF10727_consen 56 --------------------------AG-AILDLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRP---GQIVVHTS 104 (127)
T ss_dssp --------------------------T------TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-T---T-EEEES-
T ss_pred --------------------------cc-cccccccccccCCEEEEEechHHHHHHHHHHHHhccCCC---CcEEEECC
Confidence 11 1234567789999999999999999999999986 555 67888777
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=7e-08 Score=100.43 Aligned_cols=143 Identities=24% Similarity=0.289 Sum_probs=94.1
Q ss_pred CCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
..++|+||| +|.||+.+|..|.++ | ++|++|+++..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~-G-----~~V~~~d~~~~------------------------------------- 133 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS-G-----YQVRILEQDDW------------------------------------- 133 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC-C-----CeEEEeCCCcc-------------------------------------
Confidence 448999999 999999999999999 8 99999997531
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+++++++.+||+||+|||.....++++++.+ +++ +++|+.++ ++
T Consensus 134 -------------------------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~---~~iv~Dv~-Sv 177 (374)
T PRK11199 134 -------------------------------DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPE---DCILVDLT-SV 177 (374)
T ss_pred -------------------------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCC---CcEEEECC-Cc
Confidence 0123456789999999999999999999988 776 67777664 22
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeC-ChhHHHHHHHHhcCCCceEEecC
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~-~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
... +.+.+.+..+.+....-.+.||.... ..+. ..+...+ +++..+.+.+++...|.++...+
T Consensus 178 K~~---------~~~~~~~~~~~~fvg~HPm~G~~~~~--~~~~-~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~ 241 (374)
T PRK11199 178 KNA---------PLQAMLAAHSGPVLGLHPMFGPDVGS--LAKQ-VVVVCDGRQPEAYQWLLEQIQVWGARLHRIS 241 (374)
T ss_pred cHH---------HHHHHHHhCCCCEEeeCCCCCCCCcc--cCCC-EEEEcCCCCchHHHHHHHHHHHCCCEEEECC
Confidence 111 22334443321100011256664421 2222 1222223 45667889999999998887655
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=106.42 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=100.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.||+|||+|.||.+++..|... |. .++|++|+++++.++... +. +.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-G~---~~~V~~~d~~~~~~~~a~---------~~---------------g~------ 49 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-GL---AREVVAVDRRAKSLELAV---------SL---------------GV------ 49 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CC---CCEEEEEECChhHHHHHH---------HC---------------CC------
Confidence 6899999999999999999988 62 147999999986544210 00 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.....+++++++.++|+||+|||++.++++++++.+++++ ++ +|+...|+...
T Consensus 50 -----------------------~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~~~~---~~-ii~d~~svk~~ 102 (735)
T PRK14806 50 -----------------------IDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADLKPLLSE---HA-IVTDVGSTKGN 102 (735)
T ss_pred -----------------------CCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHHHHhcCC---Cc-EEEEcCCCchH
Confidence 0112356777788999999999999999999999998875 44 45555455432
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhH-------------hhhccCceEEEEe--CChhHHHHHHHHhcCCC
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-------------EIYNKEYANARIC--GAEKWRKPLAKFLRRPH 268 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~-------------ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g 268 (461)
+.+.+++.++.. .+...|+++. +...+....++.. .+++..+.+.++|+..|
T Consensus 103 ---------~~~~l~~~~~~~----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 169 (735)
T PRK14806 103 ---------VVDAARAVFGEL----PAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVG 169 (735)
T ss_pred ---------HHHHHHHhcccc----CCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 123455555321 1223344442 1222333322322 34567788999999999
Q ss_pred ceEEec
Q 012547 269 FTVWDN 274 (461)
Q Consensus 269 ~~v~~s 274 (461)
-+++..
T Consensus 170 ~~~~~~ 175 (735)
T PRK14806 170 ADVLHM 175 (735)
T ss_pred CEEEEc
Confidence 766543
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.2e-08 Score=93.78 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=116.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|+|++||+|.|..+++..+... |...+ +++..+..+..... ..+..
T Consensus 1 ~~~gfigag~ma~ala~g~~~~-Gi~~~-~~i~~s~~~~~~~~-------------------------~~~~~------- 46 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS-GIIEA-NRIWASVQTERSLG-------------------------LMFEA------- 46 (267)
T ss_pred CceeEechhhhHHHHHhccccc-CCCch-hheeeecCchhhhh-------------------------hhhhc-------
Confidence 6899999999999999999888 85544 45555544221100 00110
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
..++.+.+..+.++.+|++|++|+++.++.++.++.+.+.. +++++|+..|+...
T Consensus 47 ----------------------~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls~~~~~~~~---~~iivS~aaG~tl~ 101 (267)
T KOG3124|consen 47 ----------------------LGVKTVFTNLEVLQASDVVFLSVKPQVIESVLSEIKPKVSK---GKIIVSVAAGKTLS 101 (267)
T ss_pred ----------------------CCceeeechHHHHhhccceeEeecchhHHHHhhcCcccccc---ceEEEEEeecccHH
Confidence 02333333377788999999999999999999999886554 57999999998775
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
.+++.++. ..+ +++.+||++.-+..|...+..- ....++.+.++++|+..|+...+.++.+.
T Consensus 102 ------------~l~~~l~~-~~r-viRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~iD 164 (267)
T KOG3124|consen 102 ------------SLESKLSP-PTR-VIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVPEKCID 164 (267)
T ss_pred ------------HHHHhcCC-CCc-eEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHhhh
Confidence 25666662 233 5789999999999886533222 12456779999999999999988887653
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.2e-07 Score=92.91 Aligned_cols=162 Identities=17% Similarity=0.303 Sum_probs=101.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.|+|+|+|.|.||..+|..|.+. | +.|.+|+++...... ... ..+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~-g-----~~v~i~g~d~~~~~~---------~~a------------~~l-------- 47 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA-G-----LVVRIIGRDRSAATL---------KAA------------LEL-------- 47 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc-C-----CeEEEEeecCcHHHH---------HHH------------hhc--------
Confidence 57999999999999999999999 8 889899888653221 000 001
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCH-HHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNL-QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl-~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+++| ..+.+. .+++.+||+||+|||-..+.++++++.|++++ +++|..++. +-
T Consensus 48 ----------------gv~d------~~~~~~~~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~---g~iv~Dv~S-~K 101 (279)
T COG0287 48 ----------------GVID------ELTVAGLAEAAAEADLVIVAVPIEATEEVLKELAPHLKK---GAIVTDVGS-VK 101 (279)
T ss_pred ----------------Cccc------ccccchhhhhcccCCEEEEeccHHHHHHHHHHhcccCCC---CCEEEeccc-cc
Confidence 1111 122332 56678899999999999999999999998887 676665441 11
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEE---EEeCcchhHhhhccCceEEEEeC--ChhHHHHHHHHhcCCCceEEecC
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~---vlsGPn~a~ev~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
..+-+.+.+..+... +++ -+.||.--.....+.....+... +.++.+.+.+++...|-+++..+
T Consensus 102 ---------~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 102 ---------SSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred ---------HHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 123344555543211 111 24566411122344333333332 35688999999998887776544
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-07 Score=102.61 Aligned_cols=160 Identities=14% Similarity=0.183 Sum_probs=102.3
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
.+.+.|||+|||+|.||.++|..|.+. | ++|.+|+|+... +. ...
T Consensus 365 ~~~~~~kIgIIGlG~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~--------------------------a~~-- 409 (667)
T PLN02712 365 NDGSKLKIAIVGFGNFGQFLAKTMVKQ-G-----HTVLAYSRSDYS-DE--------------------------AQK-- 409 (667)
T ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHC-c-----CEEEEEECChHH-HH--------------------------HHH--
Confidence 334568999999999999999999988 7 899999998532 11 000
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc-CCCEEEEcCCchhHHHHHHHHHH-HhhccCCCCEEEEE
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISR-YWKERITVPVIISL 196 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~-~aDiIIiaVps~~~~~vl~~i~~-~l~~~~~~~iIIs~ 196 (461)
+ ++...+++++++. .+|+||+|||...+.++++++.+ .+++ +++++++
T Consensus 410 -------~--------------------Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~---g~ivvDv 459 (667)
T PLN02712 410 -------L--------------------GVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKR---STLFVDV 459 (667)
T ss_pred -------c--------------------CCeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCC---CcEEEEC
Confidence 0 2234567777665 58999999999999999999876 4665 6888888
Q ss_pred eecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhc-c---CceE---EEEeCC---hhHHHHHHHHhcC
Q 012547 197 AKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN-K---EYAN---ARICGA---EKWRKPLAKFLRR 266 (461)
Q Consensus 197 tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~-g---~~~~---~~~~~~---~~~~~~l~~ll~~ 266 (461)
+.+=. .+.+.+.+.++.. .+ .+...|.+..+.+. | .+.. ..+.++ .+.++.+.++|..
T Consensus 460 ~SvK~----------~~~~~~~~~l~~~-~~-~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~ 527 (667)
T PLN02712 460 LSVKE----------FPRNLFLQHLPQD-FD-ILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAR 527 (667)
T ss_pred CCccH----------HHHHHHHHhccCC-Cc-eEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHH
Confidence 53311 1224456655421 12 33456666655431 2 1100 112222 2345666788888
Q ss_pred CCceEEecC
Q 012547 267 PHFTVWDNG 275 (461)
Q Consensus 267 ~g~~v~~s~ 275 (461)
.|-+++..+
T Consensus 528 lGa~vv~ms 536 (667)
T PLN02712 528 EGCRMVEMS 536 (667)
T ss_pred cCCEEEEeC
Confidence 887766543
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.4e-07 Score=100.23 Aligned_cols=159 Identities=13% Similarity=0.166 Sum_probs=98.9
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+.++|||+|||+|.||.++|..|.+. | ++|.+|+|+... +. ...
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~--------------------------A~~--- 92 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQ-G-----HTVLAHSRSDHS-LA--------------------------ARS--- 92 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHH-HH--------------------------HHH---
Confidence 34568999999999999999999988 8 899999998432 10 000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh-cCCCEEEEcCCchhHHHHHHHHH-HHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av-~~aDiIIiaVps~~~~~vl~~i~-~~l~~~~~~~iIIs~t 197 (461)
+ ++...+|+++++ .++|+||+|||...+.++++++. +++++ +++|+.++
T Consensus 93 ------~--------------------Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~---g~iVvDv~ 143 (667)
T PLN02712 93 ------L--------------------GVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLPLQRLKR---NTLFVDVL 143 (667)
T ss_pred ------c--------------------CCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCC---CeEEEECC
Confidence 0 233456677644 56999999999999999999986 56776 67787774
Q ss_pred ecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHh----hhccCceEEE--EeCCh----hHHHHHHHHhcCC
Q 012547 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE----IYNKEYANAR--ICGAE----KWRKPLAKFLRRP 267 (461)
Q Consensus 198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~e----v~~g~~~~~~--~~~~~----~~~~~l~~ll~~~ 267 (461)
++. ..+.+.+.+.++.. .. .+-.-|-+..| ...+...... ..+++ +.++.+.++|...
T Consensus 144 -SvK---------~~~~~~l~~~l~~~-~~-~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 211 (667)
T PLN02712 144 -SVK---------EFAKNLLLDYLPED-FD-IICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFERE 211 (667)
T ss_pred -CCc---------HHHHHHHHHhcCCC-Ce-EEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHc
Confidence 211 12334555555421 12 22233444333 2233331111 11222 2456677888888
Q ss_pred CceEEecC
Q 012547 268 HFTVWDNG 275 (461)
Q Consensus 268 g~~v~~s~ 275 (461)
|-++...+
T Consensus 212 Ga~v~~ms 219 (667)
T PLN02712 212 GCKMVEMS 219 (667)
T ss_pred CCEEEEeC
Confidence 87776543
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-06 Score=88.85 Aligned_cols=168 Identities=13% Similarity=0.088 Sum_probs=100.5
Q ss_pred ceEEEECccH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhh
Q 012547 44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (461)
Q Consensus 44 mkI~IIGaGa--------------------mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (461)
|||+|.|+|+ -|.+||..|+++ | |+|++|+|+++.++.-..+
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA-G-----heV~V~Drnrsa~e~e~~e------------ 62 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA-G-----HDVVLAEPNREFMSDDLWK------------ 62 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC-C-----CEEEEEeCChhhhhhhhhH------------
Confidence 7899999997 388999999999 8 9999999987644210000
Q ss_pred HHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHHHHHH
Q 012547 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISR 182 (461)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~~i~~ 182 (461)
.+.. .+...++++.++++++|+||+|+|.. +++++++.+.+
T Consensus 63 ---------~Lae-----------------------------aGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa 104 (341)
T TIGR01724 63 ---------KVED-----------------------------AGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIE 104 (341)
T ss_pred ---------HHHH-----------------------------CCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHh
Confidence 0100 13456678889999999999999965 58899888888
Q ss_pred HhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeC-----cchhHh---hhccCceEEEEeCCh
Q 012547 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGG-----PNIASE---IYNKEYANARICGAE 254 (461)
Q Consensus 183 ~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsG-----Pn~a~e---v~~g~~~~~~~~~~~ 254 (461)
.+.+ ++++|.++ .+++.. +...+++.+-.....+.+.+. |++..+ +..|......--.++
T Consensus 105 ~L~~---GaIVID~S-TIsP~t--------~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~e 172 (341)
T TIGR01724 105 HVPE---NAVICNTC-TVSPVV--------LYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATE 172 (341)
T ss_pred cCCC---CCEEEECC-CCCHHH--------HHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccCCH
Confidence 8776 67777554 455441 222333322100112222221 222111 111111100001246
Q ss_pred hHHHHHHHHhcCCCceEEe-cCChHH
Q 012547 255 KWRKPLAKFLRRPHFTVWD-NGDLVT 279 (461)
Q Consensus 255 ~~~~~l~~ll~~~g~~v~~-s~Di~g 279 (461)
+..+++.++-.+.+-..|. ..|+++
T Consensus 173 e~i~~~~el~~~~~~~~~~~pa~l~~ 198 (341)
T TIGR01724 173 EQISKCVELAKSTGKKAYVVPADVTS 198 (341)
T ss_pred HHHHHHHHHHHHhCCCeeecchhhcc
Confidence 7788888888887766664 456665
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=93.16 Aligned_cols=191 Identities=15% Similarity=0.082 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCCccchhhhhh
Q 012547 54 WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILK 133 (461)
Q Consensus 54 mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~ 133 (461)
||..||..|+++ | ++|.+|+|++++++.+.+ ..+ .+
T Consensus 1 MG~~mA~nL~~~-G-----~~V~v~nrt~~~~~~l~~--------~~g-------------~~----------------- 36 (459)
T PRK09287 1 MGKNLALNIASH-G-----YTVAVYNRTPEKTDEFLA--------EEG-------------KG----------------- 36 (459)
T ss_pred CcHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHH--------hhC-------------CC-----------------
Confidence 899999999999 8 999999999887664211 000 00
Q ss_pred hcccccCCCCCCCCeEEecCHHHHhcC---CCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccc
Q 012547 134 DGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPR 209 (461)
Q Consensus 134 ~~~~~~~~~~~~~~i~~t~dl~~av~~---aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~ 209 (461)
.++....+++++++. +|+||++||. ..++++++.+.+++.+ +.++|.+.+....++
T Consensus 37 ------------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~~---GdiiID~gn~~~~~t----- 96 (459)
T PRK09287 37 ------------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLEK---GDIIIDGGNSNYKDT----- 96 (459)
T ss_pred ------------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCCC---CCEEEECCCCCHHHH-----
Confidence 034566788887764 8999999996 4899999999999887 678888776544432
Q ss_pred cCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceE-------EecCChHHH-H
Q 012547 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTV-------WDNGDLVTH-E 281 (461)
Q Consensus 210 ~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v-------~~s~Di~gv-e 281 (461)
....+.+++ .|.......+..||.-|+ .| + .++++++++..+.++.+|..-+-++ .+..+. |. -
T Consensus 97 -~~~~~~l~~-~Gi~fvdapVSGG~~gA~---~G-~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~-GaGh 168 (459)
T PRK09287 97 -IRREKELAE-KGIHFIGMGVSGGEEGAL---HG-P-SIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPD-GAGH 168 (459)
T ss_pred -HHHHHHHHh-cCCeEEecCCCCCHHHHh---cC-C-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCCceeeeCCC-CHHH
Confidence 111122222 122111122334444433 34 3 4568888888888888887644332 222222 22 1
Q ss_pred HHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHH-HhCCCchhhc
Q 012547 282 VMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITH-LLAEEPEKLA 330 (461)
Q Consensus 282 ~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~-a~G~~~~t~~ 330 (461)
..+.+-|. --..+.+++.|...+++ .+|.+++.+.
T Consensus 169 ~vKmvhN~--------------ie~~~mq~iaEa~~l~~~~~Gl~~~~l~ 204 (459)
T PRK09287 169 YVKMVHNG--------------IEYGDMQLIAEAYDLLKDGLGLSAEEIA 204 (459)
T ss_pred HHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 22222222 22344568899999998 5899877653
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.1e-06 Score=83.77 Aligned_cols=199 Identities=22% Similarity=0.284 Sum_probs=115.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||.|+||.++|..|... | .+|.+|+|.....+. ...
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~-G-----~~ViV~~r~~~s~~~--------------------------A~~------- 57 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS-G-----VEVVVGVRPGKSFEV--------------------------AKA------- 57 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-c-----CEEEEEECcchhhHH--------------------------HHH-------
Confidence 6899999999999999999988 8 899999876422110 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHH-HHHHHhhccCCCCEEEEEeecCcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.+... .+++++++.||+|++++|....+.++. ++.+.+++ ++ ++..+-|+..
T Consensus 58 ----------------------~G~~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~---Ga-iL~f~hgfni 110 (335)
T PRK13403 58 ----------------------DGFEV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLRE---GQ-MLLFSHGFNI 110 (335)
T ss_pred ----------------------cCCEE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCC---CC-EEEECCCcce
Confidence 02222 378899999999999999877778874 58888886 55 5557778876
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEE--EeCcchhH--h--hhccCceEEEEeCC-----hhHHHHHHHHhcC-----
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILY--LGGPNIAS--E--IYNKEYANARICGA-----EKWRKPLAKFLRR----- 266 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~v--lsGPn~a~--e--v~~g~~~~~~~~~~-----~~~~~~l~~ll~~----- 266 (461)
.. ....+.....+.. =-||++.. + -+.|.|+++.+-.| .+.+.........
T Consensus 111 ~~-------------~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a~~iG~~ragv 177 (335)
T PRK13403 111 HF-------------GQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYAKGVGCTRAGV 177 (335)
T ss_pred ec-------------CceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHHHHcCCCceeE
Confidence 41 1222211223221 14566542 1 23456766544221 1233334444332
Q ss_pred --CCceEEecCChHH--HHHHHHHHHHHHHHHh-hccCccchHHHHHHHHHHHHHHHHHHh
Q 012547 267 --PHFTVWDNGDLVT--HEVMGGLKNVYAIGAA-LTNESATSKSVYFAHCTSEMVFITHLL 322 (461)
Q Consensus 267 --~g~~v~~s~Di~g--ve~~galKNv~Ai~~G-i~~g~~n~~a~l~~~~~~Em~~l~~a~ 322 (461)
..|+-.+.+|+.| .-+||.+-..+-.+.- +...|-....+++ .++.|+..++..+
T Consensus 178 ~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ayf-e~~he~kli~dli 237 (335)
T PRK13403 178 IETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAYF-ECLHELKLIVDLM 237 (335)
T ss_pred EecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHH
Confidence 2244556778888 3457755544322221 2222222222333 4677877776544
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-06 Score=89.89 Aligned_cols=144 Identities=11% Similarity=0.119 Sum_probs=91.1
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.++|+|||. |.||..+|..|.+..| ++|+.|++..+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~-----~~V~g~D~~d~-------------------------------------- 40 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQ-----LEVIGHDPADP-------------------------------------- 40 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-----CEEEEEcCCcc--------------------------------------
Confidence 479999999 9999999999986424 78888876421
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH---hhccCCCCEEEEEee
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY---WKERITVPVIISLAK 198 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~---l~~~~~~~iIIs~tk 198 (461)
...++++++++||+||+|||...+.++++++.++ +++ +++|..+.
T Consensus 41 ----------------------------~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~---~~iVtDVg- 88 (370)
T PRK08818 41 ----------------------------GSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAA---GQLWLDVT- 88 (370)
T ss_pred ----------------------------ccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCC---CeEEEECC-
Confidence 0123456688999999999999999999999987 566 56655443
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEE---EEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecC
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~---vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
++-. .+.+.+.+. + .+++ -+.||... ...++.+..++.....+..+.++++++..|-++...+
T Consensus 89 SvK~---------~i~~~~~~~-~---~~fVG~HPMaG~E~s-~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 89 SIKQ---------APVAAMLAS-Q---AEVVGLHPMTAPPKS-PTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred CCcH---------HHHHHHHhc-C---CCEEeeCCCCCCCCC-cccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEcC
Confidence 2111 111222221 1 1111 24555432 2334554333333334456778899998887766544
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.5e-06 Score=86.14 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=70.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+|||+|||+|.||+.+|..++.. | . +|.+++++++.++... .++ ... .....
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~-~-----~~ev~L~D~~~~~~~~~~----~dl-~~~-----------~~~~~----- 54 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK-E-----LGDVVLFDIVEGVPQGKA----LDI-AEA-----------APVEG----- 54 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEECCCchhHHHH----HHH-Hhh-----------hhhcC-----
Confidence 47999999999999999999987 6 4 8999999887543210 000 000 00000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cc--------------hhHHHHHHHHHHHhh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps--------------~~~~~vl~~i~~~l~ 185 (461)
. ...+..++|.+ ++++||+||+++ |. ..++++++++.++..
T Consensus 55 ----~------------------~~~i~~~~d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~ 111 (307)
T PRK06223 55 ----F------------------DTKITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAP 111 (307)
T ss_pred ----C------------------CcEEEeCCCHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 0 01456667775 589999999986 33 347777777777764
Q ss_pred ccCCCCEEEEEeecCcc
Q 012547 186 ERITVPVIISLAKGVEA 202 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~~ 202 (461)
+.++|..+|..+.
T Consensus 112 ----~~~viv~tNP~d~ 124 (307)
T PRK06223 112 ----DAIVIVVTNPVDA 124 (307)
T ss_pred ----CeEEEEecCcHHH
Confidence 4567777776543
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.5e-07 Score=90.49 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=71.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-|+|+|||+|.||.++|..|+.. | ++|..|+++++... .
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~-G-----~~V~~~d~~~~~~~----------------------------~------ 184 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGF-G-----ATITAYDAYPNKDL----------------------------D------ 184 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCChhHhh----------------------------h------
Confidence 347999999999999999999987 8 89999998863210 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh-HHH-HHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKE-VFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~-~~~-vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+..+.++++++++||+|++++|... +.. +.+++.+.+++ ++++|.++.|
T Consensus 185 -------------------------~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~---gavlIN~aRG 236 (330)
T PRK12480 185 -------------------------FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKK---GAILVNAARG 236 (330)
T ss_pred -------------------------hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCC---CcEEEEcCCc
Confidence 01233568888999999999999753 333 44566667776 7899999999
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
-..+
T Consensus 237 ~~vd 240 (330)
T PRK12480 237 AVIN 240 (330)
T ss_pred cccC
Confidence 7665
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.3e-06 Score=85.57 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=78.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|||+|.||+.+|..++.. | + +|.++++.++..+. + ..++ +.+...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-g-----~~~VvlvDi~~~l~~g---~-a~d~----------------~~~~~~---- 51 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-E-----LADLVLLDVVEGIPQG---K-ALDM----------------YEASPV---- 51 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-C-----CCeEEEEeCCCChhHH---H-HHhh----------------hhhhhc----
Confidence 7999999999999999999988 7 4 79999997653221 0 0001 111100
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHhhc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKE 186 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l~~ 186 (461)
. . ....+++++|.++ +++||+||++++. ..++++++++.++..
T Consensus 52 ~-~------------------~~~~i~~t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p- 110 (305)
T TIGR01763 52 G-G------------------FDTKVTGTNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP- 110 (305)
T ss_pred c-C------------------CCcEEEecCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence 0 0 0024677888876 7999999999972 246666777777643
Q ss_pred cCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 187 ~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+..+|.++|-.+.- ..++++..|.|..++
T Consensus 111 ---~~~iIv~tNP~di~----------t~~~~~~sg~~~~rv 139 (305)
T TIGR01763 111 ---NPIIVVVSNPLDAM----------TYVAWQKSGFPKERV 139 (305)
T ss_pred ---CeEEEEecCcHHHH----------HHHHHHHHCcCHHHE
Confidence 56788888866532 345566655443443
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.8e-06 Score=85.00 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=71.2
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
.+.+.+||+|||+|.||+++|..++.. |+ .+|.|+|++++.++. +. ++..+. . .+..
T Consensus 2 ~~~~~~KI~IIGaG~vG~~ia~~la~~-gl----~~i~LvDi~~~~~~~---~~----ld~~~~-------~-~~~~--- 58 (321)
T PTZ00082 2 TMIKRRKISLIGSGNIGGVMAYLIVLK-NL----GDVVLFDIVKNIPQG---KA----LDISHS-------N-VIAG--- 58 (321)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhC-CC----CeEEEEeCCCchhhH---HH----HHHHhh-------h-hccC---
Confidence 445568999999999999999999987 72 379999999876432 11 111110 0 0000
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc---------------------hhHHHHH
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS---------------------TETKEVF 177 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps---------------------~~~~~vl 177 (461)
....+..++|.+ ++++||+||++.-. ..+++++
T Consensus 59 -------------------------~~~~I~~~~d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~ 112 (321)
T PTZ00082 59 -------------------------SNSKVIGTNNYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVA 112 (321)
T ss_pred -------------------------CCeEEEECCCHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 001466668885 68999999997611 1266666
Q ss_pred HHHHHHhhccCCCCEEEEEeecCc
Q 012547 178 EEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 178 ~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+++.++.. +..++..+|..+
T Consensus 113 ~~i~~~~p----~a~~iv~sNP~d 132 (321)
T PTZ00082 113 EGIKKYCP----NAFVIVITNPLD 132 (321)
T ss_pred HHHHHHCC----CeEEEEecCcHH
Confidence 77777654 356777776554
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-05 Score=81.24 Aligned_cols=142 Identities=18% Similarity=0.158 Sum_probs=88.2
Q ss_pred CeEEecC--HHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhC
Q 012547 147 PLKVVTN--LQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG 222 (461)
Q Consensus 147 ~i~~t~d--l~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg 222 (461)
++++++| +.+++++||+||.|||.. ..+.++.++.+.+++ ++++.|.+.++... + +.+.+.
T Consensus 64 ~i~~~~~~~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~---~~ilaSntS~~~~~-----------~-la~~~~ 128 (314)
T PRK08269 64 RIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDA---DAIIASTTSTFLVT-----------D-LQRHVA 128 (314)
T ss_pred CeEeecCcchHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCC---CcEEEEccccCCHH-----------H-HHhhcC
Confidence 5777654 668889999999999974 567788899998887 78887766555543 2 555454
Q ss_pred CCCCcEEEEeCcchhHhhhccCceEEEE--eCChhHHHHHHHHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccCc
Q 012547 223 VPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNES 300 (461)
Q Consensus 223 ~~~~~v~vlsGPn~a~ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~ 300 (461)
.| .++. |-.|......-....++. ..+++..+.+..++...|..+....|.-|-.+
T Consensus 129 ~p-~r~~---g~Hf~~Pp~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~Gfi~------------------ 186 (314)
T PRK08269 129 HP-ERFL---NAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPGYIV------------------ 186 (314)
T ss_pred Cc-ccEE---EEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcch------------------
Confidence 33 2221 111111100101111221 23567888999999888887776677544211
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 301 ATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 301 ~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
..++...++|...+++..+.+++++
T Consensus 187 ----nri~~~~l~EAl~l~e~g~~~~e~i 211 (314)
T PRK08269 187 ----PRIQALAMNEAARMVEEGVASAEDI 211 (314)
T ss_pred ----HHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 1344567778888887777776654
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.4e-06 Score=73.13 Aligned_cols=121 Identities=22% Similarity=0.358 Sum_probs=77.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|||+ |.+|+++|..|... +.. .++.|++++++.++.... + ++. .... ++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-~l~---~ei~L~D~~~~~~~g~a~----D-l~~--------------~~~~---~~ 54 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-GLA---DEIVLIDINEDKAEGEAL----D-LSH--------------ASAP---LP 54 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-TTS---SEEEEEESSHHHHHHHHH----H-HHH--------------HHHG---ST
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CceEEeccCcccceeeeh----h-hhh--------------hhhh---cc
Confidence 79999999 99999999999988 642 579999999876553111 1 110 1000 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cc--------------hhHHHHHHHHHHHhhc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWKE 186 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps--------------~~~~~vl~~i~~~l~~ 186 (461)
.+..+..+..+++++||+||++. |. ..++++.+++.++..
T Consensus 55 -----------------------~~~~i~~~~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p- 110 (141)
T PF00056_consen 55 -----------------------SPVRITSGDYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAP- 110 (141)
T ss_dssp -----------------------EEEEEEESSGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHST-
T ss_pred -----------------------cccccccccccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCC-
Confidence 02344445566789999999987 22 135555566666543
Q ss_pred cCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 187 ~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
+.+++.++|-++. +..++++..+.+..+
T Consensus 111 ---~~~vivvtNPvd~----------~t~~~~~~s~~~~~k 138 (141)
T PF00056_consen 111 ---DAIVIVVTNPVDV----------MTYVAQKYSGFPPNK 138 (141)
T ss_dssp ---TSEEEE-SSSHHH----------HHHHHHHHHTSSGGG
T ss_pred ---ccEEEEeCCcHHH----------HHHHHHHhhCcCccc
Confidence 5678878876553 446777777655433
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.3e-06 Score=75.25 Aligned_cols=94 Identities=35% Similarity=0.468 Sum_probs=65.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch-hhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.++|+|||.|+.|.+-|..|.++ | .+|++..|... ..+..+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS-G-----~~V~Vglr~~s~s~~~A~-------------------------------- 45 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS-G-----VNVIVGLREGSASWEKAK-------------------------------- 45 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC-C------EEEEEE-TTCHHHHHHH--------------------------------
T ss_pred CCEEEEECCChHHHHHHHHHHhC-C-----CCEEEEecCCCcCHHHHH--------------------------------
Confidence 36899999999999999999999 8 89999988865 221100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+|| .+ .+.+|+++.||+|++.+|.....+++ ++|.|++++ ++. +..+-|+
T Consensus 46 -----------~~Gf------------~v-~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~---G~~-L~fahGf 97 (165)
T PF07991_consen 46 -----------ADGF------------EV-MSVAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKP---GAT-LVFAHGF 97 (165)
T ss_dssp -----------HTT-------------EC-CEHHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-T---T-E-EEESSSH
T ss_pred -----------HCCC------------ee-ccHHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCC---CCE-EEeCCcc
Confidence 1122 22 45778999999999999999999998 889999998 554 4466676
Q ss_pred cc
Q 012547 201 EA 202 (461)
Q Consensus 201 ~~ 202 (461)
..
T Consensus 98 ni 99 (165)
T PF07991_consen 98 NI 99 (165)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.9e-06 Score=88.06 Aligned_cols=80 Identities=20% Similarity=0.163 Sum_probs=56.1
Q ss_pred ceEEEECccHHHHHHHH--HHH----HhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 44 LRIVGVGAGAWGSVFTA--MLQ----DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 44 mkI~IIGaGamG~alA~--~La----~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
+||+|||+|+||.+++. .++ .+ | ++|.+|+++++.++.+... ++ .+++..
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~-g-----~eV~L~Did~e~l~~~~~~-----~~-------------~~~~~~ 56 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELS-G-----STIALMDIDEERLETVEIL-----AK-------------KIVEEL 56 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCC-C-----CEEEEECCCHHHHHHHHHH-----HH-------------HHHHhc
Confidence 58999999999999776 343 33 4 7999999999877653221 11 111111
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~ 172 (461)
. . ...+..++|+++++++||+||+++++..
T Consensus 57 ~-------~------------------~~~I~~ttD~~eal~~AD~Vi~ai~~~~ 86 (423)
T cd05297 57 G-------A------------------PLKIEATTDRREALDGADFVINTIQVGG 86 (423)
T ss_pred C-------C------------------CeEEEEeCCHHHHhcCCCEEEEeeEecC
Confidence 0 0 0157789999999999999999999643
|
linked to 3D####ucture |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-05 Score=81.54 Aligned_cols=107 Identities=16% Similarity=0.256 Sum_probs=71.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+.+||+|||+|.+|..+|..++.. |. .++.|+|++++.++... ++-.+ ..+..
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~-~~----~~l~L~Di~~~~~~g~~-------lDl~~-----------~~~~~---- 56 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK-NL----GDVVLYDVIKGVPQGKA-------LDLKH-----------FSTLV---- 56 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC-CC----CeEEEEECCCccchhHH-------HHHhh-----------hcccc----
Confidence 457999999999999999999887 62 47999999987654211 11111 00000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cc--------------hhHHHHHHHHHHHhh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps--------------~~~~~vl~~i~~~l~ 185 (461)
+. ...+..++|++ ++++||+||++. |. ..++++++++.++.+
T Consensus 57 ~~---------------------~~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p 114 (319)
T PTZ00117 57 GS---------------------NINILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCP 114 (319)
T ss_pred CC---------------------CeEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 00 01355567887 689999999999 33 346677777777754
Q ss_pred ccCCCCEEEEEeecCc
Q 012547 186 ERITVPVIISLAKGVE 201 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~ 201 (461)
+..+|.++|..+
T Consensus 115 ----~a~vivvsNP~d 126 (319)
T PTZ00117 115 ----NAFVICVTNPLD 126 (319)
T ss_pred ----CeEEEEecChHH
Confidence 466777777654
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.7e-07 Score=87.34 Aligned_cols=127 Identities=20% Similarity=0.331 Sum_probs=84.3
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
....+|+|||+|.||+.||+..+.. | ++|.+++++++.+.+..+ .+.+-+. .+... +
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~s-g-----~~V~l~d~~~~aL~~A~~-~I~~sl~--------------rvakK--k 65 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATS-G-----LNVWLVDANEDALSRATK-AISSSLK--------------RVAKK--K 65 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhc-C-----CceEEecCCHHHHHHHHH-HHHHHHH--------------HHHhh--c
Confidence 3456899999999999999999999 8 999999999988775432 1111110 00000 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc--hhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--TETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps--~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
+.+.+..-+|++.. .+..++.++|...++.+||+||.++-. +..+.++++|...+++ ++++.+-+.
T Consensus 66 ~~~~~~~~~e~v~~---------~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~---~~il~tNTS 133 (298)
T KOG2304|consen 66 KADDPVALEEFVDD---------TLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKS---STILATNTS 133 (298)
T ss_pred ccCChhhHHHHHHH---------HHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhccc---ceEEeeccc
Confidence 00100000112121 123578889999999999999999864 5678899999888886 677777665
Q ss_pred cCcc
Q 012547 199 GVEA 202 (461)
Q Consensus 199 Gi~~ 202 (461)
.+..
T Consensus 134 Sl~l 137 (298)
T KOG2304|consen 134 SLSL 137 (298)
T ss_pred ceeH
Confidence 5543
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.7e-06 Score=84.83 Aligned_cols=96 Identities=20% Similarity=0.320 Sum_probs=68.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-|+|+|||+|.||.++|..|++..| .+|..|+++.... ...
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g-----~~V~~~d~~~~~~----------------------------~~~----- 186 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYG-----SDVVAYDPFPNAK----------------------------AAT----- 186 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCccHh----------------------------HHh-----
Confidence 34799999999999999999954325 6787777664310 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHH--HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF--EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl--~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+...+++++++++||+|++++|.......+ ++..+.+++ ++++|.+++|
T Consensus 187 -------------------------~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~---gailIN~sRG 238 (332)
T PRK08605 187 -------------------------YVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKK---GAVFVNCARG 238 (332)
T ss_pred -------------------------hccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCC---CcEEEECCCC
Confidence 1223457888999999999999976443333 344556676 7899999999
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
...+
T Consensus 239 ~~vd 242 (332)
T PRK08605 239 SLVD 242 (332)
T ss_pred cccC
Confidence 7765
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-06 Score=89.96 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=77.3
Q ss_pred ceEEEECccHHHHHH-HHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSVF-TAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~al-A~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+++|+|+||.++ +..|+++ | ++|++++++++.+++++++++..+. ..+.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~-g-----~~V~~vd~~~~~v~aL~~qglY~v~----------------~~~~----- 53 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN-G-----FEVTFVDVNQELIDALNKRKSYQVI----------------VVGE----- 53 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHhcCCCeEEE----------------EecC-----
Confidence 799999999999855 8888888 7 8999999988888876554321000 1100
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEe--cCHHH---HhcCCCEEEEcCCchhHHHHHHHHHHHhhccC-----CCCE
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVV--TNLQE---AVWDADIVINGLPSTETKEVFEEISRYWKERI-----TVPV 192 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t--~dl~~---av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~-----~~~i 192 (461)
+... ..+ ..+... .+.++ ++.++|+|+++|++.+.+.++..|.+.+.+.- +.-.
T Consensus 54 ~~~~------------~~i----~~v~~~~~~~~~~~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~ 117 (381)
T PRK02318 54 NEQV------------ETV----SNVSAINSADEEAVIEAIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLN 117 (381)
T ss_pred CCcE------------EEE----eeEeeeCCCCHHHHHHHhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCE
Confidence 0000 000 022222 12122 45588999999999999999999988776420 0126
Q ss_pred EEEEeecCccc
Q 012547 193 IISLAKGVEAE 203 (461)
Q Consensus 193 IIs~tkGi~~~ 203 (461)
|+||.||+.+.
T Consensus 118 VlsceN~~~ng 128 (381)
T PRK02318 118 IIACENMIRGT 128 (381)
T ss_pred EEecCChhhHH
Confidence 89999999875
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.1e-05 Score=73.30 Aligned_cols=123 Identities=23% Similarity=0.291 Sum_probs=79.6
Q ss_pred EEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCC
Q 012547 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (461)
Q Consensus 46 I~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (461)
|+|||+ |.||..+|..|+.. |.+. ..+|.++|+++++++....+ ++..- ....
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-~~~~-~~el~L~D~~~~~l~~~~~d-----l~~~~----------~~~~--------- 54 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-SVLL-AIELVLYDIDEEKLKGVAMD-----LQDAV----------EPLA--------- 54 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-CCCc-ceEEEEEeCCcccchHHHHH-----HHHhh----------hhcc---------
Confidence 689999 99999999999987 5211 15899999998766542211 11100 0000
Q ss_pred ccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHhhccC
Q 012547 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKERI 188 (461)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l~~~~ 188 (461)
...+.+++|+.+++++||+||++.-. ..++++++++.++.+
T Consensus 55 --------------------~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p--- 111 (263)
T cd00650 55 --------------------DIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP--- 111 (263)
T ss_pred --------------------CcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 01567788888889999999996622 246777777777664
Q ss_pred CCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 189 TVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 189 ~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+..++..+|-.+. +..++++..|.|..++
T Consensus 112 -~a~~i~~tNP~d~----------~t~~~~~~sg~~~~kv 140 (263)
T cd00650 112 -DAWIIVVSNPVDI----------ITYLVWRYSGLPKEKV 140 (263)
T ss_pred -CeEEEEecCcHHH----------HHHHHHHHhCCCchhE
Confidence 4677777765543 3355667655444443
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=5e-05 Score=76.63 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=73.9
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCC
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (461)
|+|||+|.||..+|..++.. | . +|.++|++++.++... + ++ .. ..... ..
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~-----l~eV~L~Di~e~~~~g~~---~-dl-~~-------------~~~~~----~~- 51 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-E-----LGDVVLLDIVEGLPQGKA---L-DI-SQ-------------AAPIL----GS- 51 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-C-----CcEEEEEeCCCcHHHHHH---H-HH-HH-------------hhhhc----CC-
Confidence 68999999999999999987 6 4 8999999976443210 0 01 00 00000 00
Q ss_pred ccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHhhccC
Q 012547 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKERI 188 (461)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l~~~~ 188 (461)
...+..++|.+ ++++||+||+++.. ..++++++++.++..
T Consensus 52 --------------------~~~I~~t~d~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p--- 107 (300)
T cd01339 52 --------------------DTKVTGTNDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAP--- 107 (300)
T ss_pred --------------------CeEEEEcCCHH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 01456667765 58999999997731 236677777777664
Q ss_pred CCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 189 TVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 189 ~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+..+|..+|-.+. +...+++..+.|..++
T Consensus 108 -~~~iIv~sNP~di----------~t~~~~~~s~~~~~rv 136 (300)
T cd01339 108 -NAIVIVVTNPLDV----------MTYVAYKASGFPRNRV 136 (300)
T ss_pred -CeEEEEecCcHHH----------HHHHHHHHhCCCHHHE
Confidence 3566777765543 2345566655443343
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00017 Score=74.55 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=44.0
Q ss_pred cccccchhHHhhHHHHHhhcCCCC-----CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 18 IHHTNGSLEERLDELRRLMGKAEG-----DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+|-.||-+. +..++=.+|-.... +.+||+|||+|.+|+++|..|+.. |.. .++.|+|.+++.++
T Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~m~~~~~~KI~IIGaG~VG~~~a~~l~~~-~l~---~el~LiDi~~~~~~ 76 (350)
T PLN02602 8 SSLGPGGLD-LSQAFFKPIHNSSPPSPTRRHTKVSVVGVGNVGMAIAQTILTQ-DLA---DELALVDVNPDKLR 76 (350)
T ss_pred cccccchhh-hhhhhhhcccccccccccCCCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCCCchhh
Confidence 344666655 54444443322222 226999999999999999999877 632 47999999887654
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=7e-05 Score=74.41 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=58.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+|||+|||+|.||..++..+.+. + . ..+ +.+|+++.++++.+.+ . +
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~-~-~--~~elv~v~d~~~~~a~~~a~---------~------------~-------- 47 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG-R-I--NAELYAFYDRNLEKAENLAS---------K------------T-------- 47 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC-C-C--CeEEEEEECCCHHHHHHHHH---------h------------c--------
Confidence 47999999999999999998865 2 0 133 6678888765442100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHH
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~ 182 (461)
.....+|+++.+.++|+|++|+|+..+.+++.++..
T Consensus 48 -------------------------~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~ 83 (265)
T PRK13304 48 -------------------------GAKACLSIDELVEDVDLVVECASVNAVEEVVPKSLE 83 (265)
T ss_pred -------------------------CCeeECCHHHHhcCCCEEEEcCChHHHHHHHHHHHH
Confidence 123456788877889999999999999888877654
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=74.18 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=34.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+||+|||+|.+|+++|..|+.. |.. ++|.+++++++.++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~-g~~---~ei~l~D~~~~~~~~ 40 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ-GIA---DELVLIDINEEKAEG 40 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhhH
Confidence 4899999999999999999988 631 489999999877654
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00014 Score=73.91 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=33.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|||+|||+|.+|+++|..|+.. |.. ++|.+++++++.++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~-g~~---~ev~l~D~~~~~~~ 39 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR-GLA---SEIVLVDINKAKAE 39 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCC---CEEEEEECCchhhh
Confidence 7999999999999999999988 621 58999999987554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00011 Score=64.62 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=73.5
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
|||+|+|+ |.||..++..+.+..+ +++ -.++|+.+.... + ....+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~-----~~lv~~v~~~~~~~~g---~---------------------d~g~~~--- 48 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG-----FELVGAVDRKPSAKVG---K---------------------DVGELA--- 48 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT-----EEEEEEEETTTSTTTT---S---------------------BCHHHC---
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC-----cEEEEEEecCCccccc---c---------------------hhhhhh---
Confidence 79999999 9999999999988424 664 456666521110 0 011100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+ ....++.+++|+++++..+|+||-++-+..+.+.++....+ +..+|+.+.|+.
T Consensus 49 -~-------------------~~~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~------g~~~ViGTTG~~ 102 (124)
T PF01113_consen 49 -G-------------------IGPLGVPVTDDLEELLEEADVVIDFTNPDAVYDNLEYALKH------GVPLVIGTTGFS 102 (124)
T ss_dssp -T-------------------SST-SSBEBS-HHHHTTH-SEEEEES-HHHHHHHHHHHHHH------T-EEEEE-SSSH
T ss_pred -C-------------------cCCcccccchhHHHhcccCCEEEEcCChHHhHHHHHHHHhC------CCCEEEECCCCC
Confidence 0 00125677899999999999999999777777766665543 467888888997
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcch
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNI 236 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~ 236 (461)
.+. -+.+++... .+.++..|||
T Consensus 103 ~~~---------~~~l~~~a~----~~~vl~a~Nf 124 (124)
T PF01113_consen 103 DEQ---------IDELEELAK----KIPVLIAPNF 124 (124)
T ss_dssp HHH---------HHHHHHHTT----TSEEEE-SSS
T ss_pred HHH---------HHHHHHHhc----cCCEEEeCCC
Confidence 652 033555322 2456777775
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00069 Score=66.36 Aligned_cols=169 Identities=18% Similarity=0.138 Sum_probs=103.3
Q ss_pred CceEEEECccH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhh
Q 012547 43 PLRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102 (461)
Q Consensus 43 ~mkI~IIGaGa--------------------mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~ 102 (461)
+|||+|.|+|+ -|+.||..+|++ | |+|.+.+.+.+..+. +|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA-G-----HDVVLaePn~d~~dd---~~---------- 61 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA-G-----HDVVLAEPNRDIMDD---EH---------- 61 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc-C-----CcEEeecCCccccCH---HH----------
Confidence 48999999997 377899999999 8 999999988765442 11
Q ss_pred hHHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHHHHH
Q 012547 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEIS 181 (461)
Q Consensus 103 ~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~~i~ 181 (461)
...+ ++ .+++.++|-.++++.+++.++.+|-. .+-.+.++|.
T Consensus 62 -----------w~~v---------------ed-----------AGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~ 104 (340)
T COG4007 62 -----------WKRV---------------ED-----------AGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREIL 104 (340)
T ss_pred -----------HHHH---------------Hh-----------cCcEEecCchhhhhcceEEEEecccchhhHHHHHHHH
Confidence 1111 11 25777787788899999999999965 8889999999
Q ss_pred HHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEe-----CcchhHh---hhccCceEEEEeCC
Q 012547 182 RYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLG-----GPNIASE---IYNKEYANARICGA 253 (461)
Q Consensus 182 ~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vls-----GPn~a~e---v~~g~~~~~~~~~~ 253 (461)
+++.+ +++|. .+=.+++- .+...+...+-.+...+.+.+ -|++..+ +..|+.+...--..
T Consensus 105 ~hvpE---gAVic-nTCT~sp~--------vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elAT 172 (340)
T COG4007 105 EHVPE---GAVIC-NTCTVSPV--------VLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELAT 172 (340)
T ss_pred hhCcC---CcEec-ccccCchh--------HHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeecc
Confidence 99987 56443 33233322 111222222221111122221 1333221 11222221111123
Q ss_pred hhHHHHHHHHhcCCCceEEec-CChHH
Q 012547 254 EKWRKPLAKFLRRPHFTVWDN-GDLVT 279 (461)
Q Consensus 254 ~~~~~~l~~ll~~~g~~v~~s-~Di~g 279 (461)
++..++..++.++.|..+|+. .|+..
T Consensus 173 eEQi~r~velaes~Gk~~yv~padv~s 199 (340)
T COG4007 173 EEQIERCVELAESTGKEVYVLPADVVS 199 (340)
T ss_pred HHHHHHHHHHHHhcCCceEecCHHHHH
Confidence 678899999999999988864 44443
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00014 Score=70.52 Aligned_cols=142 Identities=18% Similarity=0.195 Sum_probs=92.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|+|+.||.|.||..+...|.+. | |+|..|+++++.++++..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~-g-----hdvV~yD~n~~av~~~~~~g------------------------------- 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG-G-----HDVVGYDVNQTAVEELKDEG------------------------------- 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC-C-----CeEEEEcCCHHHHHHHHhcC-------------------------------
Confidence 7899999999999999999999 8 99999999998776532211
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHH---HhcCCCEEEEcCCch-hHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE---AVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~---av~~aDiIIiaVps~-~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+..+++.+ -+...-.|-+.||.. .+.++++++++.+.+ +.+||.--|.
T Consensus 44 ------------------------a~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~---GDivIDGGNS 96 (300)
T COG1023 44 ------------------------ATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSA---GDIVIDGGNS 96 (300)
T ss_pred ------------------------CccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcCC---CCEEEECCcc
Confidence 111122222 245568899999986 899999999999998 5677764443
Q ss_pred CccccccccccCCHHHHHHh---H--hCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcC
Q 012547 200 VEAELEAVPRIITPTQMINR---A--TGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRR 266 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~---~--lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~ 266 (461)
--.+ .+++ . -|.....+..-.|+--++ .| .+.+++++++..+.+..+|..
T Consensus 97 ~y~D------------s~rr~~~l~~kgi~flD~GTSGG~~G~~---~G--~~lMiGG~~~a~~~~~pif~~ 151 (300)
T COG1023 97 NYKD------------SLRRAKLLAEKGIHFLDVGTSGGVWGAE---RG--YCLMIGGDEEAVERLEPIFKA 151 (300)
T ss_pred chHH------------HHHHHHHHHhcCCeEEeccCCCCchhhh---cC--ceEEecCcHHHHHHHHHHHHh
Confidence 2222 2222 1 121111222222332222 11 234678888888999999964
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=72.29 Aligned_cols=81 Identities=22% Similarity=0.281 Sum_probs=57.5
Q ss_pred CceEEEECccHHHHHHHHHHHHh-cCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~-~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++||+|||+|.||..++..|... .+ +++. +|+|++++.+... . .+.
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~-----~el~aV~dr~~~~a~~~a---------~-------------~~g----- 53 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPG-----LTLSAVAVRDPQRHADFI---------W-------------GLR----- 53 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCC-----eEEEEEECCCHHHHHHHH---------H-------------hcC-----
Confidence 48999999999999999998762 13 6665 7888876543210 0 000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHH
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~ 181 (461)
.....+|+++.+.++|+|++|+|...+.++.....
T Consensus 54 --------------------------~~~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL 88 (271)
T PRK13302 54 --------------------------RPPPVVPLDQLATHADIVVEAAPASVLRAIVEPVL 88 (271)
T ss_pred --------------------------CCcccCCHHHHhcCCCEEEECCCcHHHHHHHHHHH
Confidence 01234677787888999999999998888776654
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0018 Score=64.92 Aligned_cols=94 Identities=33% Similarity=0.444 Sum_probs=71.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh-hhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
++|+|||.|+=|.+=|..|.++ | .+|++--|.... .+. . .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS-G-----lnViiGlr~g~~s~~k-----------A-----------------~----- 59 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS-G-----LNVIIGLRKGSSSWKK-----------A-----------------K----- 59 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc-C-----CcEEEEecCCchhHHH-----------H-----------------H-----
Confidence 5899999999999999999999 8 888877666532 111 0 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHH-HHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.+ ++++ .+.++|++.||+|++-+|.....++.+ +|.|++++ +. .+..+-|+.
T Consensus 60 ----------~d------------Gf~V-~~v~ea~k~ADvim~L~PDe~q~~vy~~~I~p~Lk~---G~-aL~FaHGfN 112 (338)
T COG0059 60 ----------ED------------GFKV-YTVEEAAKRADVVMILLPDEQQKEVYEKEIAPNLKE---GA-ALGFAHGFN 112 (338)
T ss_pred ----------hc------------CCEe-ecHHHHhhcCCEEEEeCchhhHHHHHHHHhhhhhcC---Cc-eEEeccccc
Confidence 11 2222 457789999999999999999999998 89999997 44 456777876
Q ss_pred cc
Q 012547 202 AE 203 (461)
Q Consensus 202 ~~ 203 (461)
..
T Consensus 113 ih 114 (338)
T COG0059 113 IH 114 (338)
T ss_pred ee
Confidence 54
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00021 Score=75.91 Aligned_cols=82 Identities=21% Similarity=0.205 Sum_probs=53.1
Q ss_pred CceEEEECccHHHHHHHH--HHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~--~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++||+|||+|++|.+.+. .++...+ +. ..+|.++|++++.++.... .++. .+...
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~-l~-~~evvLvDid~er~~~~~~-----l~~~-------------~~~~~--- 57 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPA-LR-DAEIALMDIDPERLEESEI-----VARK-------------LAESL--- 57 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCcc-CC-CCEEEEECCCHHHHHHHHH-----HHHH-------------HHHhc---
Confidence 379999999999977776 5552212 11 1689999999987663221 1111 01100
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP 169 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp 169 (461)
+. ...+..++|+.+++++||+||+++-
T Consensus 58 -~~---------------------~~~i~~ttD~~eal~dADfVv~ti~ 84 (431)
T PRK15076 58 -GA---------------------SAKITATTDRREALQGADYVINAIQ 84 (431)
T ss_pred -CC---------------------CeEEEEECCHHHHhCCCCEEeEeee
Confidence 00 0147788998899999999999873
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00016 Score=75.56 Aligned_cols=97 Identities=20% Similarity=0.200 Sum_probs=70.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|+||..+|..|..- | .+|..|+|.....+. ...
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~f-G-----~~V~~~dr~~~~~~~--------------------------~~~------ 233 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPF-D-----VKLHYTDRHRLPEEV--------------------------EQE------ 233 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCchhh--------------------------Hhh------
Confidence 37899999999999999999876 7 899999987521110 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHHH-HHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE-EISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.++....+++++++.||+|++++| ...++.++. +....+++ ++++|.+.-|=
T Consensus 234 -----------------------~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 287 (385)
T PRK07574 234 -----------------------LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKR---GSYLVNTARGK 287 (385)
T ss_pred -----------------------cCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCC---CcEEEECCCCc
Confidence 023334578899999999999999 456777763 34555676 78899888774
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 288 iVD 290 (385)
T PRK07574 288 IVD 290 (385)
T ss_pred hhh
Confidence 443
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00029 Score=60.48 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=66.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|||+|.||......+... . +..++ -+++++++..+...+ . +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~-~---~~~~v~~v~d~~~~~~~~~~~--------~-------------~--------- 46 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS-S---PDFEVVAVCDPDPERAEAFAE--------K-------------Y--------- 46 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT-T---TTEEEEEEECSSHHHHHHHHH--------H-------------T---------
T ss_pred CEEEEECCcHHHHHHHHHHHhc-C---CCcEEEEEEeCCHHHHHHHHH--------H-------------h---------
Confidence 6899999999999999888766 2 11454 478888765443100 0 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
++...+|.++.+. +.|+|++++|+....+++.+.... +. -|.+-|-+
T Consensus 47 ------------------------~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~------g~-~v~~EKP~ 95 (120)
T PF01408_consen 47 ------------------------GIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEA------GK-HVLVEKPL 95 (120)
T ss_dssp ------------------------TSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHT------TS-EEEEESSS
T ss_pred ------------------------cccchhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHc------CC-EEEEEcCC
Confidence 2345677888776 789999999999988888776542 33 35578877
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
...
T Consensus 96 ~~~ 98 (120)
T PF01408_consen 96 ALT 98 (120)
T ss_dssp SSS
T ss_pred cCC
Confidence 654
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=7.3e-05 Score=71.24 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=21.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcC
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYG 67 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G 67 (461)
|||+|||+ |.||..++..|.++ |
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~-g 24 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-G 24 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC-C
Confidence 69999999 99999999999888 7
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00037 Score=71.08 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=35.3
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
...+||+|||+|.+|+++|..|+.. |.. .++.|+|++++.++.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~-~~~---~el~L~D~~~~~~~g 46 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQ-GIA---DELVIIDINKEKAEG 46 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCCchhHH
Confidence 3457999999999999999999987 732 379999998876543
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00041 Score=70.66 Aligned_cols=106 Identities=9% Similarity=0.127 Sum_probs=68.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.+|+++|..|+.. |.. .++.|+|++++.++.... + ++ + ...+..
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~-~~~---~el~LiD~~~~~~~g~a~----D-l~--~---------~~~~~~------ 56 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAK-GLA---DELVLVDVVEDKLKGEAM----D-LQ--H---------GSAFLK------ 56 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCccHHHHHHH----H-HH--H---------hhccCC------
Confidence 47999999999999999999887 632 589999998875543110 1 11 0 000000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC--ch--------------hHHHHHHHHHHHhhc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--ST--------------ETKEVFEEISRYWKE 186 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp--s~--------------~~~~vl~~i~~~l~~ 186 (461)
...+..++|+++ +++||+||++.- .. .++++.+++.++..
T Consensus 57 ----------------------~~~v~~~~dy~~-~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p- 112 (312)
T cd05293 57 ----------------------NPKIEADKDYSV-TANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP- 112 (312)
T ss_pred ----------------------CCEEEECCCHHH-hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 014566678875 899999999652 11 25555566666533
Q ss_pred cCCCCEEEEEeecCc
Q 012547 187 RITVPVIISLAKGVE 201 (461)
Q Consensus 187 ~~~~~iIIs~tkGi~ 201 (461)
+.+++.++|-.+
T Consensus 113 ---~~~vivvsNP~d 124 (312)
T cd05293 113 ---NAILLVVSNPVD 124 (312)
T ss_pred ---CcEEEEccChHH
Confidence 467777887554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00014 Score=74.60 Aligned_cols=96 Identities=22% Similarity=0.269 Sum_probs=69.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|.+|..+|..|..- | .+|..|+|+...... ..
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~~---------------------------~~----- 190 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGF-G-----MRILYYSRTRKPEAE---------------------------KE----- 190 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCChhhH---------------------------HH-----
Confidence 347999999999999999999877 7 899999987532100 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
. ... ..++++++++||+|++++|. ..++.++ ++....+++ ++++|.++-|
T Consensus 191 ----~--------------------~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~---ga~lIN~aRg 242 (333)
T PRK13243 191 ----L--------------------GAE-YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKP---TAILVNTARG 242 (333)
T ss_pred ----c--------------------CCE-ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECcCc
Confidence 0 122 24688889999999999995 4566666 445556676 7888888877
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
-..+
T Consensus 243 ~~vd 246 (333)
T PRK13243 243 KVVD 246 (333)
T ss_pred hhcC
Confidence 5443
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00029 Score=71.59 Aligned_cols=109 Identities=19% Similarity=0.260 Sum_probs=70.2
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 108 (461)
++..+..+|. ...++|+|||+|.||..++..|... | .++|++++|+.++++.+.. .
T Consensus 166 v~~a~~~~~~--l~~~~V~ViGaG~iG~~~a~~L~~~-g----~~~V~v~~r~~~ra~~la~--------~--------- 221 (311)
T cd05213 166 VELAEKIFGN--LKGKKVLVIGAGEMGELAAKHLAAK-G----VAEITIANRTYERAEELAK--------E--------- 221 (311)
T ss_pred HHHHHHHhCC--ccCCEEEEECcHHHHHHHHHHHHHc-C----CCEEEEEeCCHHHHHHHHH--------H---------
Confidence 4455666654 3347999999999999999999875 4 2789999999876543111 0
Q ss_pred hcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccC
Q 012547 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERI 188 (461)
Q Consensus 109 ~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~ 188 (461)
+.. .....+++.+++.++|+||.|+|+......++.+......+
T Consensus 222 -----~g~------------------------------~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~- 265 (311)
T cd05213 222 -----LGG------------------------------NAVPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSGK- 265 (311)
T ss_pred -----cCC------------------------------eEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCC-
Confidence 000 01112356677889999999999877655555543322111
Q ss_pred CCCEEEEEee
Q 012547 189 TVPVIISLAK 198 (461)
Q Consensus 189 ~~~iIIs~tk 198 (461)
+.++|.++.
T Consensus 266 -~~~viDlav 274 (311)
T cd05213 266 -PRLIVDLAV 274 (311)
T ss_pred -CeEEEEeCC
Confidence 456776663
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00035 Score=71.15 Aligned_cols=95 Identities=26% Similarity=0.375 Sum_probs=68.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|+||..+|..|..- | .+|..|++..+... +..
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~af-G-----~~V~~~~~~~~~~~-----------------------------~~~---- 176 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTW-G-----FPLRCWSRSRKSWP-----------------------------GVQ---- 176 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCCCCCC-----------------------------Cce----
Confidence 37999999999999999999976 7 89999998653210 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH-HHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi 200 (461)
......++++++++||+|++++|. ..++.++. +....+++ ++++|.+.-|=
T Consensus 177 ------------------------~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 229 (312)
T PRK15469 177 ------------------------SFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPD---GAYLLNLARGV 229 (312)
T ss_pred ------------------------eecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCC---CcEEEECCCcc
Confidence 011124688899999999999994 56676664 34445666 78899888875
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 230 vVd 232 (312)
T PRK15469 230 HVV 232 (312)
T ss_pred ccC
Confidence 444
|
|
| >PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00053 Score=59.91 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHH-HHHHHHhhcc---C--ccch-HHHHHHHHHHHHHHHHHHhCCCchh--hccChhhhhhhhccccch
Q 012547 276 DLVTHEVMGGLKN-VYAIGAALTN---E--SATS-KSVYFAHCTSEMVFITHLLAEEPEK--LAGPLLADTYVTLLKGRN 346 (461)
Q Consensus 276 Di~gve~~galKN-v~Ai~~Gi~~---g--~~n~-~a~l~~~~~~Em~~l~~a~G~~~~t--~~g~glgDl~~T~~~sRN 346 (461)
|+.+..|.+.+.| ++...+.+.+ + ..+. ...++...+.|+..++++.|..... +.. .+.+.... .+.+
T Consensus 1 di~~~~w~Kl~~n~~~n~l~al~~~~~g~l~~~~~~~~~~~~l~~E~~~va~a~G~~l~~~~~~~-~~~~~~~~--~~~~ 77 (125)
T PF08546_consen 1 DIQRERWEKLIFNAAINPLTALTGCTNGELLENPEARELIRALMREVIAVARALGIPLDPDDLEE-AIERLIRS--TPDN 77 (125)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHSHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHH-HHHHHHHC--TTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHhChhHHHHHHHHHHHHHHHHHHhhccCcHHHHHH-HHHHHHHh--cCCc
Confidence 7888999998888 3333444433 2 1221 2257888999999999999975321 100 11111111 1111
Q ss_pred hHHHHHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 347 AWYGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 347 ~~~G~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
+ ++...|..+++++ +|.+++ .++++++++|+ + +|.++++|++++.
T Consensus 78 ~-----------~SM~~D~~~gr~tEid~i~G--~vv~~a~~~gv--------------~-~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 78 R-----------SSMLQDIEAGRPTEIDYING--YVVRLAKKHGV--------------P-TPVNETIYALVKA 123 (125)
T ss_dssp -------------HHHHHHHTTB--SHHHTHH--HHHHHHHHTT------------------HHHHHHHHHHHH
T ss_pred c-----------ccHHHHHHHcccccHHHHHH--HHHHHHHHHCC--------------C-CcHHHHHHHHHHH
Confidence 1 1112232334444 677766 99999999995 7 8999999999874
|
1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B .... |
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00025 Score=74.21 Aligned_cols=98 Identities=20% Similarity=0.214 Sum_probs=69.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|.||..+|..|..- | .+|..|+|+....+. ...
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~af-G-----~~V~~~d~~~~~~~~--------------------------~~~----- 240 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPF-N-----CNLLYHDRLKMDPEL--------------------------EKE----- 240 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHC-C-----CEEEEECCCCcchhh--------------------------Hhh-----
Confidence 347999999999999999999876 7 899999887421110 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.++....++++++.+||+|++++|. ..++.++ +++...+++ ++++|.+.-|
T Consensus 241 ------------------------~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG 293 (386)
T PLN03139 241 ------------------------TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKK---GVLIVNNARG 293 (386)
T ss_pred ------------------------cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCC---CeEEEECCCC
Confidence 0233346788999999999999994 5677766 345555666 7888888877
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
=..+
T Consensus 294 ~iVD 297 (386)
T PLN03139 294 AIMD 297 (386)
T ss_pred chhh
Confidence 4433
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00035 Score=70.67 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=32.2
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
|+|||+|.+|+++|..|+.. |.. +++.++|++++.++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~-~~~---~el~l~D~~~~~~~g 38 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK-GLA---SELVLVDVNEEKAKG 38 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCccHHHH
Confidence 68999999999999999987 632 589999999876654
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00021 Score=64.27 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=34.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+.++|+|+|+|.||.+++..|++. | .++|.+|+|+.+..+.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~-g----~~~v~v~~r~~~~~~~ 58 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL-G----AAKIVIVNRTLEKAKA 58 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C----CCEEEEEcCCHHHHHH
Confidence 457999999999999999999887 5 2689999999876543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00046 Score=70.15 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=29.9
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|||+|+|+ |..|..++..|+.. |.. .+|.++++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~-g~~---~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE-DVV---KEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CEEEEEECcc
Confidence 79999998 99999999999988 721 3699999964
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00024 Score=66.26 Aligned_cols=99 Identities=22% Similarity=0.241 Sum_probs=65.4
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+-..++|+|||.|.+|.++|..+..- | .+|..|+|+....+. ...
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~~~~--------------------------~~~--- 77 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAF-G-----MRVIGYDRSPKPEEG--------------------------ADE--- 77 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHT-T------EEEEEESSCHHHHH--------------------------HHH---
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecC-C-----ceeEEecccCChhhh--------------------------ccc---
Confidence 33457999999999999999999866 7 899999999753210 000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~t 197 (461)
... ...++++.++.||+|++++|. ...+.++ ++....+++ ++++|.+.
T Consensus 78 --------------------------~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~---ga~lvN~a 127 (178)
T PF02826_consen 78 --------------------------FGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKP---GAVLVNVA 127 (178)
T ss_dssp --------------------------TTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTT---TEEEEESS
T ss_pred --------------------------ccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeecccc---ceEEEecc
Confidence 022 235788999999999999994 3344433 233344565 68899888
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
.|=..+
T Consensus 128 RG~~vd 133 (178)
T PF02826_consen 128 RGELVD 133 (178)
T ss_dssp SGGGB-
T ss_pred chhhhh
Confidence 774433
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0014 Score=64.82 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=63.4
Q ss_pred HHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE---EEE
Q 012547 155 QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI---LYL 231 (461)
Q Consensus 155 ~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v---~vl 231 (461)
.+++.++|+||+|||...+.++++++.+++++ +++|..++ ++-. .+.+.+.+..+. ..++ --+
T Consensus 40 ~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~---~~iv~Dv~-SvK~---------~~~~~~~~~~~~-~~~~v~~HPM 105 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPVSAIEDVLEEIAPYLKP---GAIVTDVG-SVKA---------PIVEAMERLLPE-GVRFVGGHPM 105 (258)
T ss_dssp HHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-T---TSEEEE---S-CH---------HHHHHHHHHHTS-SGEEEEEEES
T ss_pred HhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCC---CcEEEEeC-CCCH---------HHHHHHHHhcCc-ccceeecCCC
Confidence 46789999999999999999999999999887 67766554 3321 233456665541 1222 134
Q ss_pred eCc-----chhH-hhhccCceEEEEeC--ChhHHHHHHHHhcCCCceEEec
Q 012547 232 GGP-----NIAS-EIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN 274 (461)
Q Consensus 232 sGP-----n~a~-ev~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~v~~s 274 (461)
.|| ..+. +...|....++... +.+..+.+.+++...|.++...
T Consensus 106 ~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 106 AGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM 156 (258)
T ss_dssp CSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred CCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence 555 2222 33455544444332 3567899999999999887654
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00023 Score=63.51 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=35.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
...++.|||+|.+|.+++..|+.. |. .+|++++|+.+++++
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~----~~i~i~nRt~~ra~~ 51 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GA----KEITIVNRTPERAEA 51 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TS----SEEEEEESSHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CC----CEEEEEECCHHHHHH
Confidence 347899999999999999999998 72 569999999887665
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0011 Score=67.23 Aligned_cols=153 Identities=13% Similarity=0.155 Sum_probs=99.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.+|+|||-|+||..+|..|.++ | |.|...+|.+ .+.++ ++ | +.
T Consensus 53 l~IaIIGfGnmGqflAetli~a-G-----h~li~hsRsd--yssaa--------~~-------------y--------g~ 95 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA-G-----HGLICHSRSD--YSSAA--------EK-------------Y--------GS 95 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc-C-----ceeEecCcch--hHHHH--------HH-------------h--------cc
Confidence 6899999999999999999999 8 9999999986 22211 00 1 01
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH-hhccCCCCEEEEEeecCcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVEA 202 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~-l~~~~~~~iIIs~tkGi~~ 202 (461)
. ......|+ .-+..|+|++||..-.++.++...-+. ++. +++++..+.--.+
T Consensus 96 ~----------------------~ft~lhdl--cerhpDvvLlctsilsiekilatypfqrlrr---gtlfvdvlSvKef 148 (480)
T KOG2380|consen 96 A----------------------KFTLLHDL--CERHPDVVLLCTSILSIEKILATYPFQRLRR---GTLFVDVLSVKEF 148 (480)
T ss_pred c----------------------ccccHHHH--HhcCCCEEEEEehhhhHHHHHHhcCchhhcc---ceeEeeeeecchh
Confidence 0 01111222 236789999999999999999888766 555 6777755522222
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcE--EEEeCcchhHhhhccCceEEE---Ee---CChhHHHHHHHHhcCCCce
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENI--LYLGGPNIASEIYNKEYANAR---IC---GAEKWRKPLAKFLRRPHFT 270 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v--~vlsGPn~a~ev~~g~~~~~~---~~---~~~~~~~~l~~ll~~~g~~ 270 (461)
+ -+.+.++++....-+ -.+-||--..+-.+|.|-... ++ ..++.++.+-++|.+.+-.
T Consensus 149 e----------k~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~cegck 214 (480)
T KOG2380|consen 149 E----------KELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACEGCK 214 (480)
T ss_pred H----------HHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhcCCe
Confidence 2 245677776542111 235678755666666654331 22 2367889999999887754
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00035 Score=72.17 Aligned_cols=105 Identities=15% Similarity=0.211 Sum_probs=75.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
++.|+|||.|.||+-+|..++++ | +.|.+|+|+.++.++. +++.. ....+
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~-G-----~~VavyNRt~~ktd~f--------~~~~~-----------~~k~i----- 52 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADH-G-----YTVAVYNRTTEKTDEF--------LAERA-----------KGKNI----- 52 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhc-C-----ceEEEEeCCHHHHHHH--------HHhCc-----------cCCCc-----
Confidence 35799999999999999999999 8 9999999999887752 22211 00000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.+.....++...++..--|++.|++ ..+.+++++|.|++.+ +.++|.--|..-
T Consensus 53 -----------------------~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~L~p~Le~---gDIiIDGGNs~y 106 (473)
T COG0362 53 -----------------------VPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEK---GDIIIDGGNSHY 106 (473)
T ss_pred -----------------------cccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHhhcCC---CCEEEeCCCcCC
Confidence 0111123344457788899999998 5688999999999998 678887666554
Q ss_pred cc
Q 012547 202 AE 203 (461)
Q Consensus 202 ~~ 203 (461)
.+
T Consensus 107 ~D 108 (473)
T COG0362 107 KD 108 (473)
T ss_pred ch
Confidence 44
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00081 Score=68.94 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=32.3
Q ss_pred CCCceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012547 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (461)
Q Consensus 41 ~~~mkI~IIGa-GamG~alA~~La~~~G~~~--~~~~V~l~~r~~ 82 (461)
.+++||+|||+ |.+|+++|..|+.. |++. ...++.|+|+++
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~-~~~~~~~~~el~LiDi~~ 45 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASG-DMLGKDQPVILQLLEIPP 45 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhh-hhcCCCCccEEEEEecCC
Confidence 46789999998 99999999999877 6432 012799999864
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00095 Score=68.35 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=32.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~--~~~~V~l~~r~~ 82 (461)
++.||+|||+ |.+|+++|..|+.. |.+. ...++.|+|+++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~ 44 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASG-ELFGKDQPVVLHLLDIPP 44 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhC-CcccCCCccEEEEEecCC
Confidence 5789999998 99999999999987 6432 112799999965
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.003 Score=66.97 Aligned_cols=100 Identities=27% Similarity=0.346 Sum_probs=70.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||.|+.|.+-|..|... | ++|++--|... ++. +. ...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS-G-----vnVvvglr~~~-id~-----------~~-----------~s~~kA------ 81 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS-G-----LDISYALRKEA-IAE-----------KR-----------ASWRKA------ 81 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc-c-----ceeEEeccccc-ccc-----------cc-----------chHHHH------
Confidence 7999999999999999999888 8 88886666531 110 00 000000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
..+| +.+ .+++++++.||+|++.+|......+.+++.|++++ ++ .+..+-|+...
T Consensus 82 --------~~dG------------F~v-~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~---Ga-~L~fsHGFni~ 136 (487)
T PRK05225 82 --------TENG------------FKV-GTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQ---GA-ALGYSHGFNIV 136 (487)
T ss_pred --------HhcC------------Ccc-CCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCC---CC-EEEecCCceee
Confidence 0112 222 46888999999999999988888888999999997 44 45567677653
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00037 Score=70.18 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=33.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
...+|+|+|+|.+|.++|..|... | .+|++++|+++..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~-G-----~~V~v~~R~~~~~ 187 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSAL-G-----ARVFVGARSSADL 187 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 346899999999999999999987 7 8999999987643
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00043 Score=70.50 Aligned_cols=77 Identities=27% Similarity=0.340 Sum_probs=54.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+|+|||+|.+|.+++..+....+ ..+|++|+|++++++.+.+ .+.+ . +
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~----~~~V~V~~Rs~~~a~~~a~-----~~~~-------------~--g----- 174 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRP----IKQVRVWGRDPAKAEALAA-----ELRA-------------Q--G----- 174 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHHHH-----HHHh-------------c--C-----
Confidence 45789999999999999986664212 2789999999887664221 1100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~ 171 (461)
..+....++++++.+||+|+.|+|+.
T Consensus 175 ------------------------~~~~~~~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 175 ------------------------FDAEVVTDLEAAVRQADIISCATLST 200 (314)
T ss_pred ------------------------CceEEeCCHHHHHhcCCEEEEeeCCC
Confidence 02445678888899999999999876
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0016 Score=66.14 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=32.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
||+|||+|.+|+++|..|+.. |.. .++.|+|.+++.++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~a~ 38 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL-GLF---SEIVLIDVNEGVAE 38 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhh
Confidence 799999999999999999987 642 47999999877654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0014 Score=66.71 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=29.5
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
|||+|||+ |++|+++|..|+.. |.. .++.|+|.+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~-~~~---~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN-PLV---SELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCC---cEEEEEecC
Confidence 79999999 99999999999877 531 479999987
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0013 Score=66.83 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=31.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|||+|||+|.+|+++|..|... +. . .++.|+++.++.++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~-~~-~--~el~LiDi~~~~~~ 39 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ-GL-G--SELVLIDINEEKAE 39 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc-cc-c--ceEEEEEccccccc
Confidence 6999999999999999999765 42 1 48999999965443
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0099 Score=61.89 Aligned_cols=235 Identities=16% Similarity=0.206 Sum_probs=134.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.+|.|+|+|..+--+|..+.+. + ++.|-+++|...+.+. +.+-++++. ..+...+.-....
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~-~----~~~vGi~~R~S~rSq~-----f~~aL~~~~---------~~~~v~vqn~~h~ 62 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKH-G----NCRVGIVGRESVRSQR-----FFEALARSD---------GLFEVSVQNEQHQ 62 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhc-c----CceeeeecCcchhHHH-----HHHHHHhCC---------CEEEEeecchhhh
Confidence 5799999999999999999877 5 3689999997654433 222333211 0111111000000
Q ss_pred CccchhhhhhhcccccCCCCCCCCe-EEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH-hhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~-l~~~~~~~iIIs~tkGi~ 201 (461)
.+ +|-+ .+ .+..|.++...+.|.+|+|||+++..+|+++|.+- ++. -..+|-++..++
T Consensus 63 -~l-------~G~~---------~id~~~~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~---vk~iVLvSPtfG 122 (429)
T PF10100_consen 63 -AL-------SGEC---------TIDHVFQDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKR---VKSIVLVSPTFG 122 (429)
T ss_pred -hh-------cCeE---------EhhHhhcCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhh---CCEEEEECcccc
Confidence 00 0000 01 23468888888999999999999999999999764 333 234555666665
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEE---eCcchhH------hh-hccCceEEEEe---CChhHHHHHHHHhcCCC
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYL---GGPNIAS------EI-YNKEYANARIC---GAEKWRKPLAKFLRRPH 268 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vl---sGPn~a~------ev-~~g~~~~~~~~---~~~~~~~~l~~ll~~~g 268 (461)
.. ..+...+.+. +. ...+... .|-.... .+ ..+.-.-+.++ ++......++.+|...|
T Consensus 123 S~-------~lv~~~l~~~-~~-~~EVISFStY~gdTr~~d~~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~g 193 (429)
T PF10100_consen 123 SH-------LLVKGFLNDL-GP-DAEVISFSTYYGDTRWSDGEQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLG 193 (429)
T ss_pred hH-------HHHHHHHHhc-CC-CceEEEeecccccceeccCCCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcC
Confidence 43 2333444332 21 1122111 1111100 00 01100111222 24567899999999999
Q ss_pred ceEEecCChHHHHHH--------HHHHHHHHHHHhhcc------------CccchHHH--HHHHHHHHHHHHHHHhCCCc
Q 012547 269 FTVWDNGDLVTHEVM--------GGLKNVYAIGAALTN------------ESATSKSV--YFAHCTSEMVFITHLLAEEP 326 (461)
Q Consensus 269 ~~v~~s~Di~gve~~--------galKNv~Ai~~Gi~~------------g~~n~~a~--l~~~~~~Em~~l~~a~G~~~ 326 (461)
+.+...+...-+|-- ..+.|-+++.+=+.. .|+=+... -|...-.||..+.+++|+++
T Consensus 194 I~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~ 273 (429)
T PF10100_consen 194 IQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEP 273 (429)
T ss_pred CeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999988887763 345666666553321 13333322 25566799999999999843
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00055 Score=69.44 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=65.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|+||..+|..+..- | .+|..|+|+... .+.
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~af-G-----~~V~~~~r~~~~------------------------------~~~---- 160 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAF-G-----MNIYAYTRSYVN------------------------------DGI---- 160 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCcc------------------------------cCc----
Confidence 347999999999999999877654 7 899999986420 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH-HHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-~i~~~l~~~~~~~iIIs~tkG 199 (461)
. ....++++++++||+|++++|. ..++.++. +....+++ ++++|.++-|
T Consensus 161 -------------------------~-~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~---ga~lIN~sRG 211 (303)
T PRK06436 161 -------------------------S-SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRK---GLAIINVARA 211 (303)
T ss_pred -------------------------c-cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCC---CeEEEECCCc
Confidence 0 0124678889999999999995 45666553 34444566 6888888877
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
-..+
T Consensus 212 ~~vd 215 (303)
T PRK06436 212 DVVD 215 (303)
T ss_pred cccC
Confidence 4443
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0013 Score=67.39 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=32.0
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCch
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (461)
+++||+|||+ |.+|+++|..|+.. |.+. ...++.|+|.+++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~~ 44 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASG-EMFGPDQPVILQLLELPQA 44 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEEecCCc
Confidence 3679999999 99999999999987 6532 0127999998653
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00068 Score=73.81 Aligned_cols=95 Identities=21% Similarity=0.256 Sum_probs=67.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||.|.+|..+|..|..- | .+|..|++.... +. . ..
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~-------------------------~-~~------- 178 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-G-----MKVLAYDPYISP-ER-------------------------A-EQ------- 178 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH-------------------------H-Hh-------
Confidence 6899999999999999999866 7 899999875321 00 0 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+ .+...+++++++++||+|++++|. ..++.++ ++....+++ ++++|.++-|=.
T Consensus 179 --~--------------------g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~~ 233 (525)
T TIGR01327 179 --L--------------------GVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKK---GVIIVNCARGGI 233 (525)
T ss_pred --c--------------------CCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCC---CeEEEEcCCCce
Confidence 0 233345788999999999999995 4666666 233345666 688898887744
Q ss_pred cc
Q 012547 202 AE 203 (461)
Q Consensus 202 ~~ 203 (461)
.+
T Consensus 234 vd 235 (525)
T TIGR01327 234 ID 235 (525)
T ss_pred eC
Confidence 43
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00072 Score=73.66 Aligned_cols=95 Identities=21% Similarity=0.178 Sum_probs=68.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.+|..+|..+..- | .+|..|++.... +. ...
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~------ 180 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-G-----MKVIAYDPYISP-ER--------------------------AAQ------ 180 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH--------------------------HHh------
Confidence 47899999999999999999876 7 899999986421 00 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
..+... ++++++++||+|++++|. ..++.++ .+....+++ ++++|.++-|=
T Consensus 181 -----------------------~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~---ga~lIN~aRG~ 233 (526)
T PRK13581 181 -----------------------LGVELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKP---GVRIINCARGG 233 (526)
T ss_pred -----------------------cCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCC---CeEEEECCCCc
Confidence 012333 688899999999999995 4666666 445555676 68888888775
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 234 ~vd 236 (526)
T PRK13581 234 IID 236 (526)
T ss_pred eeC
Confidence 443
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00036 Score=67.29 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=79.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhh---hHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAE---HLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~---~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
-||+|+|+|-.|+++|-.+|.. | ++|.+||..++++...-++ .+.. +++++ .+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~-G-----yqVqlYDI~e~Ql~~ALen~~Kel~~-Lee~g-----------~lrG---- 61 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS-G-----YQVQLYDILEKQLQTALENVEKELRK-LEEHG-----------LLRG---- 61 (313)
T ss_pred cceeEeecccccchHHHHHhcc-C-----ceEEEeeccHHHHHHHHHHHHHHHHH-HHHhh-----------hhcc----
Confidence 4899999999999999999999 8 9999999998877642110 1100 11111 1111
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.+.++|- +.-|..|++++|++++|=.|=.|+|.+ ..+.++++|-..+.+ .+++-|-+.
T Consensus 62 ----nlsa~eq-------------la~is~t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~---~tIlaSSTS 121 (313)
T KOG2305|consen 62 ----NLSADEQ-------------LALISGTTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADP---TTILASSTS 121 (313)
T ss_pred ----CccHHHH-------------HHHHhCCccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCC---ceEEecccc
Confidence 2222211 224677899999999999999999985 577788888888776 455555444
Q ss_pred cCcc
Q 012547 199 GVEA 202 (461)
Q Consensus 199 Gi~~ 202 (461)
.+-+
T Consensus 122 t~mp 125 (313)
T KOG2305|consen 122 TFMP 125 (313)
T ss_pred ccCh
Confidence 4433
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0027 Score=66.46 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=32.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCe--eEEEE--ecCchhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKV--LIRIW--RRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~--~V~l~--~r~~~~~~ 86 (461)
++.||+|||+ |++|+++|..|+.. |.+..+. .+.|+ +++++.++
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~-~l~~~~~ei~L~L~diD~~~~~a~ 91 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASG-EVFGQDQPIALKLLGSERSKEALE 91 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEeccCccchhhh
Confidence 4689999999 99999999999987 7554212 34445 77776654
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0019 Score=65.80 Aligned_cols=121 Identities=14% Similarity=0.246 Sum_probs=74.4
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
||+|||+ |++|+++|..|+.. ++. .++.|+|+++...+. + + +...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~-~~~---~elvL~Di~~a~g~a-----~-D------------------L~~~------ 46 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ-PYV---SELSLYDIAGAAGVA-----A-D------------------LSHI------ 46 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC-CCC---cEEEEecCCCCcEEE-----c-h------------------hhcC------
Confidence 7999999 99999999999887 632 479999988621111 0 0 0000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEE-e-c-CHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHh
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKV-V-T-NLQEAVWDADIVINGLPS----------------TETKEVFEEISRYW 184 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~-t-~-dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l 184 (461)
.. ...+.. + + |+.+++++||+||++.-. ..++++.+.|.++.
T Consensus 47 -~~------------------~~~i~~~~~~~~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~ 107 (312)
T TIGR01772 47 -PT------------------AASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC 107 (312)
T ss_pred -Cc------------------CceEEEecCCCchHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC
Confidence 00 013443 2 2 345679999999997632 13556666666663
Q ss_pred hccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 185 KERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 185 ~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+ +.++|.++|..+.. ...+..++++..+.|..++
T Consensus 108 -p---~~iiivvsNPvDv~------~~i~t~~~~~~sg~p~~rV 141 (312)
T TIGR01772 108 -P---KAMILVITNPVNST------VPIAAEVLKKKGVYDPNKL 141 (312)
T ss_pred -C---CeEEEEecCchhhH------HHHHHHHHHHhcCCChHHE
Confidence 3 57888899877531 0113456667666654454
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0036 Score=62.30 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=47.5
Q ss_pred CeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCC
Q 012547 147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIE 226 (461)
Q Consensus 147 ~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~ 226 (461)
++.+++|+++...++|+||.++|+....+.+...... +..+|+.+.|+..+. .+.+.+.... .
T Consensus 55 gv~~~~d~~~l~~~~DvVIdfT~p~~~~~~~~~al~~------g~~vVigttg~~~e~---------~~~l~~aA~~--~ 117 (266)
T TIGR00036 55 GVPVTDDLEAVETDPDVLIDFTTPEGVLNHLKFALEH------GVRLVVGTTGFSEED---------KQELADLAEK--A 117 (266)
T ss_pred CceeeCCHHHhcCCCCEEEECCChHHHHHHHHHHHHC------CCCEEEECCCCCHHH---------HHHHHHHHhc--C
Confidence 3566788887645689999999998888877766542 445666666876541 1223333221 1
Q ss_pred cEEEEeCcchhH
Q 012547 227 NILYLGGPNIAS 238 (461)
Q Consensus 227 ~v~vlsGPn~a~ 238 (461)
.+.++.+|||+.
T Consensus 118 g~~v~~a~NfSl 129 (266)
T TIGR00036 118 GIAAVIAPNFSI 129 (266)
T ss_pred CccEEEECcccH
Confidence 245677888854
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0026 Score=65.14 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=30.6
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~--~~~~V~l~~r~~ 82 (461)
||+|+|| |.+|+.+|..|+.. |++. ...++.|+|+++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~-~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG-ELFGDDQPVILHLLDIPP 41 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC-CccCCCCceEEEEEecCC
Confidence 8999999 99999999999987 6543 123699999987
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00075 Score=70.56 Aligned_cols=93 Identities=17% Similarity=0.231 Sum_probs=65.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|++|..+|..+..- | .+|.+|++.....+ .
T Consensus 115 ~gktvGIIG~G~IG~~va~~l~a~-G-----~~V~~~Dp~~~~~~-----------------------------~----- 154 (381)
T PRK00257 115 AERTYGVVGAGHVGGRLVRVLRGL-G-----WKVLVCDPPRQEAE-----------------------------G----- 154 (381)
T ss_pred CcCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCcccccc-----------------------------c-----
Confidence 347899999999999999999876 7 89999987532100 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-----hHHHHH-HHHHHHhhccCCCCEEEE
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----ETKEVF-EEISRYWKERITVPVIIS 195 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-----~~~~vl-~~i~~~l~~~~~~~iIIs 195 (461)
... ..++++.+++||+|++++|-. .+..++ ++....+++ ++++|.
T Consensus 155 -------------------------~~~-~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~---gailIN 205 (381)
T PRK00257 155 -------------------------DGD-FVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRP---GAWLIN 205 (381)
T ss_pred -------------------------Ccc-ccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCC---CeEEEE
Confidence 011 246788889999999999953 244544 234444666 788998
Q ss_pred EeecCccc
Q 012547 196 LAKGVEAE 203 (461)
Q Consensus 196 ~tkGi~~~ 203 (461)
++-|=..+
T Consensus 206 ~aRG~vVd 213 (381)
T PRK00257 206 ASRGAVVD 213 (381)
T ss_pred CCCCcccC
Confidence 88774443
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0027 Score=55.40 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=30.5
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+.+ .+.++|+||+|+|+....++...+. +. +..||.++.-+
T Consensus 60 ~~~-~~~~~Dvvf~a~~~~~~~~~~~~~~---~~---g~~ViD~s~~~ 100 (121)
T PF01118_consen 60 DPE-ELSDVDVVFLALPHGASKELAPKLL---KA---GIKVIDLSGDF 100 (121)
T ss_dssp SGH-HHTTESEEEE-SCHHHHHHHHHHHH---HT---TSEEEESSSTT
T ss_pred chh-HhhcCCEEEecCchhHHHHHHHHHh---hC---CcEEEeCCHHH
Confidence 444 4689999999999999999888873 44 56788777544
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00095 Score=72.46 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=42.2
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
++..+..+|..+-...+|+|||+|.||.+++..|... |. .+|++++|+.+.++.
T Consensus 252 v~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~-G~----~~V~V~nRs~era~~ 305 (519)
T PLN00203 252 VELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSK-GC----TKMVVVNRSEERVAA 305 (519)
T ss_pred HHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhC-CC----CeEEEEeCCHHHHHH
Confidence 4556677765334457899999999999999999987 71 479999999876654
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0029 Score=64.50 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=29.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|||+|||+ |.+|++++..+....+. .+++.++++++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~---~~el~L~d~~~~ 38 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA---GSELSLYDIAPV 38 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC---ccEEEEEecCCC
Confidence 79999999 99999999988652121 168999998753
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=69.48 Aligned_cols=94 Identities=19% Similarity=0.278 Sum_probs=68.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|++|..+|..+..- | .+|..|++..... ..
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~f-G-----m~V~~~d~~~~~~----------------------------~~------ 189 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESL-G-----MRVYFYDIEDKLP----------------------------LG------ 189 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCcccc----------------------------cC------
Confidence 347899999999999999998765 7 8999998753200 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
......+++++++.||+|++.+|. ..++.++ ++....+++ ++++|.++-|
T Consensus 190 -------------------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG 241 (409)
T PRK11790 190 -------------------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKP---GAILINASRG 241 (409)
T ss_pred -------------------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCC---CeEEEECCCC
Confidence 123345788999999999999995 4566666 334445666 6889988877
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
=..+
T Consensus 242 ~~vd 245 (409)
T PRK11790 242 TVVD 245 (409)
T ss_pred cccC
Confidence 5444
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0021 Score=63.59 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=63.3
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+|||+|+|+ |.||..++..+....+ .++ -+++++.+.... . ..
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~-----~elvav~d~~~~~~~~-------------------------~-~~---- 45 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAED-----LELVAAVDRPGSPLVG-------------------------Q-GA---- 45 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCCccccc-------------------------c-CC----
Confidence 489999998 9999999988876412 444 456766543211 0 00
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.++...+|+++++.++|+||.++|+....+.+..... . +..+|..+.|+
T Consensus 46 -------------------------~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~---~---G~~vvigttG~ 94 (257)
T PRK00048 46 -------------------------LGVAITDDLEAVLADADVLIDFTTPEATLENLEFALE---H---GKPLVIGTTGF 94 (257)
T ss_pred -------------------------CCccccCCHHHhccCCCEEEECCCHHHHHHHHHHHHH---c---CCCEEEECCCC
Confidence 0234567888888889999999998888777766554 2 34455556677
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 95 s~~ 97 (257)
T PRK00048 95 TEE 97 (257)
T ss_pred CHH
Confidence 654
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0015 Score=66.77 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=62.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|.+|.+.+..++...+ -.+|.+|+|++++++++.+ .+... + .
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~----~~~v~v~~r~~~~a~~~~~-----~~~~~------------~-~------ 177 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRD----IERVRVYSRTFEKAYAFAQ-----EIQSK------------F-N------ 177 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCC----ccEEEEECCCHHHHHHHHH-----HHHHh------------c-C------
Confidence 45689999999999988877654313 2689999999887664221 11100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEE
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs 195 (461)
..+...+|+++++.++|+|+.|||+.. .++. .++++ ++.|++
T Consensus 178 ------------------------~~~~~~~~~~~~~~~aDiVi~aT~s~~--p~i~---~~l~~---G~hV~~ 219 (325)
T PRK08618 178 ------------------------TEIYVVNSADEAIEEADIIVTVTNAKT--PVFS---EKLKK---GVHINA 219 (325)
T ss_pred ------------------------CcEEEeCCHHHHHhcCCEEEEccCCCC--cchH---HhcCC---CcEEEe
Confidence 023456788889999999999999873 3333 34565 565543
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0012 Score=69.04 Aligned_cols=88 Identities=23% Similarity=0.282 Sum_probs=61.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||.|||+|.+|++.|..||++ | ..+|++.+|+.++++++... .. ..+...
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~-~----d~~V~iAdRs~~~~~~i~~~--------~~----------~~v~~~----- 52 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN-G----DGEVTIADRSKEKCARIAEL--------IG----------GKVEAL----- 52 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC-C----CceEEEEeCCHHHHHHHHhh--------cc----------ccceeE-----
Confidence 58999999999999999999999 6 37999999998877753221 00 001100
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHH
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEI 180 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i 180 (461)
.+ .+.-...+.+++++.|+||.|.|+.+...+++..
T Consensus 53 --~v--------------------D~~d~~al~~li~~~d~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 53 --QV--------------------DAADVDALVALIKDFDLVINAAPPFVDLTILKAC 88 (389)
T ss_pred --Ee--------------------cccChHHHHHHHhcCCEEEEeCCchhhHHHHHHH
Confidence 00 1111234667889999999999998776666443
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0019 Score=60.66 Aligned_cols=98 Identities=19% Similarity=0.355 Sum_probs=68.1
Q ss_pred hhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHH-HHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhh
Q 012547 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAM-LQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSRE 101 (461)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~-La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~ 101 (461)
..+.-+|+|+.++| ...+.++.|||+|++|.|++.. +.++.| . -|-++|.+++.+-.
T Consensus 67 nV~~L~~ff~~~Lg--~~~~tnviiVG~GnlG~All~Y~f~~~~~-----~~iv~~FDv~~~~VG~-------------- 125 (211)
T COG2344 67 NVKYLRDFFDDLLG--QDKTTNVIIVGVGNLGRALLNYNFSKKNG-----MKIVAAFDVDPDKVGT-------------- 125 (211)
T ss_pred cHHHHHHHHHHHhC--CCcceeEEEEccChHHHHHhcCcchhhcC-----ceEEEEecCCHHHhCc--------------
Confidence 35677899999995 4456899999999999999977 554424 3 35567777753211
Q ss_pred hhHHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHH
Q 012547 102 DVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEE 179 (461)
Q Consensus 102 ~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~ 179 (461)
...++ +++-.++++.-++ +.|+.|+|||+..-.++++.
T Consensus 126 -----------~~~~v-----------------------------~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad~ 165 (211)
T COG2344 126 -----------KIGDV-----------------------------PVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVADR 165 (211)
T ss_pred -----------ccCCe-----------------------------eeechHHHHHHHHhcCccEEEEEccHHHHHHHHHH
Confidence 01110 2333456666665 78999999999998888888
Q ss_pred HHH
Q 012547 180 ISR 182 (461)
Q Consensus 180 i~~ 182 (461)
|..
T Consensus 166 Lv~ 168 (211)
T COG2344 166 LVK 168 (211)
T ss_pred HHH
Confidence 764
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00099 Score=69.57 Aligned_cols=93 Identities=24% Similarity=0.274 Sum_probs=65.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|++|+.+|..+..- | .+|..|++.... . ..
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~-G-----~~V~~~dp~~~~--~--------------------------~~------ 154 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEAL-G-----IKTLLCDPPRAD--R--------------------------GD------ 154 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCcccc--c--------------------------cc------
Confidence 447999999999999999999866 7 899999864310 0 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh-----HHHHH-HHHHHHhhccCCCCEEEE
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIIS 195 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~-----~~~vl-~~i~~~l~~~~~~~iIIs 195 (461)
... ..++++.+++||+|++.+|-.. ...++ ++....+++ ++++|.
T Consensus 155 -------------------------~~~-~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~---gailIN 205 (378)
T PRK15438 155 -------------------------EGD-FRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKP---GAILIN 205 (378)
T ss_pred -------------------------ccc-cCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCC---CcEEEE
Confidence 001 2468888899999999998432 44444 334444566 789999
Q ss_pred EeecCccc
Q 012547 196 LAKGVEAE 203 (461)
Q Consensus 196 ~tkGi~~~ 203 (461)
++-|=..+
T Consensus 206 ~aRG~vVD 213 (378)
T PRK15438 206 ACRGAVVD 213 (378)
T ss_pred CCCchhcC
Confidence 88875444
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0059 Score=62.58 Aligned_cols=47 Identities=15% Similarity=0.315 Sum_probs=37.4
Q ss_pred HHHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 32 LRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 32 ~~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
||.---+..+.+.||+|||+ |.+|+.+|..|+.. +.. .++.++|+++
T Consensus 7 ~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~-~~~---~el~L~Di~~ 54 (323)
T PLN00106 7 LRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMN-PLV---SELHLYDIAN 54 (323)
T ss_pred hhccccccCCCCCEEEEECCCCHHHHHHHHHHHhC-CCC---CEEEEEecCC
Confidence 44444556667789999999 99999999999977 532 4899999977
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0019 Score=65.30 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
...|++|||+|.+|.+++..|... | .+|++++|+.+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-G-----a~V~v~~r~~~~ 187 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-G-----ANVTVGARKSAH 187 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHH
Confidence 347999999999999999999987 7 899999999754
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0016 Score=66.67 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=55.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|.+|.+.+..+... - +..+|.+|+|+.++++.+.+ .+.+ + +
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~-~---~~~~v~V~~r~~~~~~~~~~-----~~~~-------------~--g----- 177 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV-F---DLEEVSVYCRTPSTREKFAL-----RASD-------------Y--E----- 177 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHHHHH-----HHHh-------------h--C-----
Confidence 457899999999999977776543 1 12789999999987654221 1100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~ 171 (461)
..+...+|.++++++||+|+.|||+.
T Consensus 178 ------------------------~~v~~~~~~~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 178 ------------------------VPVRAATDPREAVEGCDILVTTTPSR 203 (325)
T ss_pred ------------------------CcEEEeCCHHHHhccCCEEEEecCCC
Confidence 03556789999999999999999985
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0016 Score=66.64 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=69.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++++|||.|.+|+.+|..+..- | .+|..|++....-.. ..
T Consensus 141 ~gkTvGIiG~G~IG~~va~~l~af-g-----m~v~~~d~~~~~~~~-------------------------~~------- 182 (324)
T COG0111 141 AGKTVGIIGLGRIGRAVAKRLKAF-G-----MKVIGYDPYSPRERA-------------------------GV------- 182 (324)
T ss_pred cCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEECCCCchhhh-------------------------cc-------
Confidence 347899999999999999999866 7 899999984321000 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH-HHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-~i~~~l~~~~~~~iIIs~tkG 199 (461)
.......++++.++.||+|.+.+|- ..++.++. +....+++ ++++|.++-|
T Consensus 183 ------------------------~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~---gailIN~aRG 235 (324)
T COG0111 183 ------------------------DGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKP---GAILINAARG 235 (324)
T ss_pred ------------------------ccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCC---CeEEEECCCc
Confidence 0233456789999999999999994 56777663 23334565 6889988888
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
-..+
T Consensus 236 ~vVd 239 (324)
T COG0111 236 GVVD 239 (324)
T ss_pred ceec
Confidence 5544
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0018 Score=66.45 Aligned_cols=78 Identities=27% Similarity=0.383 Sum_probs=56.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+.++|+|||+|.+|.+.+..++...+ -.+|.+|+|+.++++++.++ +++ .+ +
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~----~~~V~v~~R~~~~a~~l~~~-----~~~-------------~~-g----- 182 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRP----IREVRVWARDAAKAEAYAAD-----LRA-------------EL-G----- 182 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHHHHH-----Hhh-------------cc-C-----
Confidence 45799999999999998888875313 16899999999877653211 110 00 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~ 171 (461)
..+...+|+++++.++|+|+.|+|+.
T Consensus 183 ------------------------~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 183 ------------------------IPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred ------------------------ceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 02455688899999999999999985
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0015 Score=67.58 Aligned_cols=108 Identities=21% Similarity=0.219 Sum_probs=67.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.+|..+|..+..- | .+|..|+|+...... .. ..++.-
T Consensus 159 gktvGIiG~G~IG~~vA~~l~af-G-----~~V~~~dr~~~~~~~-----------~~-----------~~~~~~----- 205 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPF-G-----VKLLATRRSWTSEPE-----------DG-----------LLIPNG----- 205 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCChhhh-----------hh-----------hccccc-----
Confidence 37999999999999999999866 7 899999987421110 00 000000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.. +. ..+ ......++++++++||+|++++|. ...+.++ ++....+++ ++++|.+.-|=
T Consensus 206 --~~------~~-----~~~----~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~---ga~lINvaRG~ 265 (347)
T PLN02928 206 --DV------DD-----LVD----EKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKK---GALLVNIARGG 265 (347)
T ss_pred --cc------cc-----ccc----ccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCC---CeEEEECCCcc
Confidence 00 00 000 001235788999999999999994 4455555 233444566 68899888774
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 266 lVd 268 (347)
T PLN02928 266 LLD 268 (347)
T ss_pred ccC
Confidence 443
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0035 Score=63.03 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=47.6
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-++-.|-.-.-=+.-|+... .+....+|+|||+|..|.+++..|+.. |. .+|++++|+.++++.
T Consensus 100 ~~g~l~G~NTD~~G~~~~l~~~~--~~~~~k~vlIlGaGGaaraia~aL~~~-G~----~~I~I~nR~~~ka~~ 166 (284)
T PRK12549 100 RDGRRIGHNTDWSGFAESFRRGL--PDASLERVVQLGAGGAGAAVAHALLTL-GV----ERLTIFDVDPARAAA 166 (284)
T ss_pred cCCEEEEEcCCHHHHHHHHHhhc--cCccCCEEEEECCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHHH
Confidence 46666655655444444454322 223347899999999999999999988 71 479999999877664
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0086 Score=63.80 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=34.6
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCC----eeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK----VLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~----~~V~l~~r~~~~~~~ 87 (461)
.+.||+|||+ |++|+++|..|+.. +.|.++ .++.+++++++.++.
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~G 148 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALEG 148 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhHH
Confidence 4579999999 99999999999876 433311 268889998877653
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0023 Score=67.76 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=34.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
|+|.|+|+|.+|..+|..|.+. | ++|.+++++++.++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~-g-----~~v~vid~~~~~~~~ 38 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE-N-----NDVTVIDTDEERLRR 38 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHH
Confidence 7899999999999999999988 7 899999999876654
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0049 Score=63.16 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=31.6
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~--~~~~V~l~~r~~ 82 (461)
+.||+|+|| |.+|++++..|+.. +.+. ...+|.++++++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~-~~~~~~~~~el~L~D~~~ 43 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKG-DVFGPDQPVILHLLDIPP 43 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-cccCCCCCcEEEEEEcCC
Confidence 579999999 99999999999886 5432 124899999965
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0021 Score=65.41 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=65.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|++|..+|..+.-- | -+|..|+|.....+ .
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~f-g-----m~V~~~d~~~~~~~----------------------------~------ 183 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAF-G-----AKVVYYSTSGKNKN----------------------------E------ 183 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhc-C-----CEEEEECCCccccc----------------------------c------
Confidence 347899999999999999988644 6 78999987532100 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+. ..++++.++.||+|++++|- ..++.++ ++....+++ ++++|.+.-|
T Consensus 184 -------------------------~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~---~a~lIN~aRG 234 (311)
T PRK08410 184 -------------------------EYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKD---GAILINVGRG 234 (311)
T ss_pred -------------------------Cce-eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCC---CeEEEECCCc
Confidence 111 23688899999999999994 4555555 233444666 7899988887
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
=..+
T Consensus 235 ~vVD 238 (311)
T PRK08410 235 GIVN 238 (311)
T ss_pred cccC
Confidence 5444
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0018 Score=65.46 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=29.9
Q ss_pred CCceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGaG-amG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.-++|+|||.| .||..||..|.++ | ++|++|.++
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~-g-----atVtv~~~~ 192 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQA-H-----CSVTVVHSR 192 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHC-C-----CEEEEECCC
Confidence 34799999996 9999999999998 8 999999654
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0069 Score=62.06 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=30.8
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCch
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (461)
||+|||+ |.+|+++|..|+.. |.+. .+.++.|+|++++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-RMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-cccCCCCccEEEEEecCCc
Confidence 6999999 99999999999987 6542 2247999999654
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0049 Score=61.31 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=31.0
Q ss_pred eEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 148 i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
+.+++|+++...+.|+|+.|+|+..+.+...+.. .. +..+++...|
T Consensus 49 ~~~~~d~~~l~~~~DvVve~t~~~~~~e~~~~aL---~a---Gk~Vvi~s~~ 94 (265)
T PRK13303 49 VRVVSSVDALPQRPDLVVECAGHAALKEHVVPIL---KA---GIDCAVISVG 94 (265)
T ss_pred CeeeCCHHHhccCCCEEEECCCHHHHHHHHHHHH---Hc---CCCEEEeChH
Confidence 3456777765356899999999988877666654 33 3445555544
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0027 Score=61.64 Aligned_cols=88 Identities=25% Similarity=0.293 Sum_probs=61.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|+|+|||+|.+|..+|..|++. | |+|.+++++++.+++...+ .. .... +. ++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g-----~~Vv~Id~d~~~~~~~~~~--------~~----------~~~~-v~---gd 52 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-G-----HNVVLIDRDEERVEEFLAD--------EL----------DTHV-VI---GD 52 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-C-----CceEEEEcCHHHHHHHhhh--------hc----------ceEE-EE---ec
Confidence 7999999999999999999999 8 9999999999876541110 00 0000 00 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHH-hcCCCEEEEcCCchhHHHHHHHHHHH
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRY 183 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~a-v~~aDiIIiaVps~~~~~vl~~i~~~ 183 (461)
-.-.+-+++| +.++|+++.++..+....++-.++..
T Consensus 53 ------------------------~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~ 89 (225)
T COG0569 53 ------------------------ATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALK 89 (225)
T ss_pred ------------------------CCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHH
Confidence 0001123344 78899999999999999999888754
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0048 Score=58.81 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=35.2
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+-..|+|+|+|.|+||..+|..|.+. | ++|.+++++++.++
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~-G-----~~Vvv~D~~~~~~~ 65 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEE-G-----AKLIVADINEEAVA 65 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 33447999999999999999999998 8 99999999876544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.011 Score=56.47 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=30.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
..||+|+|+|.+|+.+|..|++. |. .+++++|++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gv----g~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GI----GKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CC----CEEEEECCC
Confidence 36899999999999999999999 82 379999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0032 Score=60.43 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=37.9
Q ss_pred hhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHh-cCCCCCCeeE-EEEecCch
Q 012547 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLI-RIWRRPGR 83 (461)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~-~G~~~~~~~V-~l~~r~~~ 83 (461)
.+.+-++++|+.+|.. ...+|+|||+|.+|.+++..+... .| .++ -+++++++
T Consensus 67 ~v~~l~~~~~~~l~~~--~~~rV~IIGaG~iG~~l~~~~~~~~~g-----~~ivgv~D~d~~ 121 (213)
T PRK05472 67 NVEELLEFIEKILGLD--RTWNVALVGAGNLGRALLNYNGFEKRG-----FKIVAAFDVDPE 121 (213)
T ss_pred eHHHHHHHHHHHhCCC--CCcEEEEECCCHHHHHHHHhhhcccCC-----cEEEEEEECChh
Confidence 4566788899999776 457899999999999999864321 14 444 45676654
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0063 Score=64.38 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=49.4
Q ss_pred HHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
++.+++|++.++.....+++|.|+|+|.+|..++..|.+. | ++|++++++++.++.
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~-~-----~~v~vid~~~~~~~~ 269 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKE-G-----YSVKLIERDPERAEE 269 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHH
Confidence 4678889999988877789999999999999999999988 7 899999999876654
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0037 Score=66.28 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=33.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
..++|+|||+|.||..++..|... | ..+|++++|+.+.++
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~-G----~~~V~v~~r~~~ra~ 220 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEK-G----VRKITVANRTLERAE 220 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHC-C----CCeEEEEeCCHHHHH
Confidence 347899999999999999999877 7 138999999986554
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0028 Score=67.05 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=40.6
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
++..+..++...+ .||.|||+|.||.+++..|+.. |. .++++++|+.++++.
T Consensus 169 v~la~~~~~~l~~--kkvlviGaG~~a~~va~~L~~~-g~----~~I~V~nRt~~ra~~ 220 (414)
T PRK13940 169 ITLAKRQLDNISS--KNVLIIGAGQTGELLFRHVTAL-AP----KQIMLANRTIEKAQK 220 (414)
T ss_pred HHHHHHHhcCccC--CEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHHH
Confidence 3455666754443 6899999999999999999988 72 589999999876553
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0067 Score=64.43 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=68.9
Q ss_pred ceEEEECccHH-HHHHHHHHHHhcC-CCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 44 LRIVGVGAGAW-GSVFTAMLQDSYG-YLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 44 mkI~IIGaGam-G~alA~~La~~~G-~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
|||+|||+|+. .--+...|++. . .+. ..+|.++|.++++++.+. .+.+.+ ....
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~-~~~l~-~~ei~L~Did~~Rl~~v~--~l~~~~----------------~~~~---- 56 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKT-PEELP-ISEVTLYDIDEERLDIIL--TIAKRY----------------VEEV---- 56 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcC-hhhCC-CCEEEEEcCCHHHHHHHH--HHHHHH----------------HHhh----
Confidence 79999999983 33344445543 1 121 268999999998766421 111111 1100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch------------------------------
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------------------------ 171 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~------------------------------ 171 (461)
+. . -.+..|+|.++|+++||+||..+-..
T Consensus 57 g~-~--------------------~~v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~ 115 (425)
T cd05197 57 GA-D--------------------IKFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFS 115 (425)
T ss_pred CC-C--------------------eEEEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhh
Confidence 00 0 14788999999999999999987431
Q ss_pred ------hHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 172 ------ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 172 ------~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.+.++++++.++.. ++.+|..+|.++.
T Consensus 116 alrni~ii~~i~~~i~~~~P----~a~lin~TNP~di 148 (425)
T cd05197 116 GLRQIPYVLDIARKXEKLSP----DAWYLNFTNPAGE 148 (425)
T ss_pred hhhhHHHHHHHHHHHHHhCC----CcEEEecCChHHH
Confidence 24566666666553 5788888887654
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0075 Score=59.93 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=45.0
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-++-.|-.-.--+.-|++. +. ....+++.|+|+|.+|.+++..|++. | .+|++++|+.++++.
T Consensus 90 ~~g~l~g~NTD~~G~~~~l~~~-~~-~~~~k~vliiGaGg~g~aia~~L~~~-g-----~~v~v~~R~~~~~~~ 155 (270)
T TIGR00507 90 EDGKLVGYNTDGIGLVSDLERL-IP-LRPNQRVLIIGAGGAARAVALPLLKA-D-----CNVIIANRTVSKAEE 155 (270)
T ss_pred eCCEEEEEcCCHHHHHHHHHhc-CC-CccCCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 3454544454433333344442 11 22346899999999999999999988 7 899999999876553
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0062 Score=62.85 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=31.5
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
+..++|+||+|+|.....++...+.. . +..||.++..+-.
T Consensus 65 ~~~~vD~Vf~alP~~~~~~~v~~a~~---a---G~~VID~S~~fR~ 104 (343)
T PRK00436 65 ILAGADVVFLALPHGVSMDLAPQLLE---A---GVKVIDLSADFRL 104 (343)
T ss_pred HhcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCcccCC
Confidence 45689999999999988888877654 2 5789998876654
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0045 Score=64.92 Aligned_cols=112 Identities=16% Similarity=0.248 Sum_probs=68.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.+|..+|..++...| .+|..|++....... . ... .+-....
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fG-----m~V~~~d~~~~~~~~----~---~~~-------------~~~~~l~---- 215 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFK-----MNLIYYDLYQSTRLE----K---FVT-------------AYGQFLK---- 215 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCCchhhh----h---hhh-------------hhccccc----
Confidence 4789999999999999999864436 789999987531100 0 000 0000000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH-HHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.. +. ....+....+++++++.||+|++++|- ..++.++. +....+++ ++++|.+.-|=
T Consensus 216 --~~--------~~-------~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~---ga~lIN~aRG~ 275 (386)
T PLN02306 216 --AN--------GE-------QPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKK---EAVLVNASRGP 275 (386)
T ss_pred --cc--------cc-------ccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCC---CeEEEECCCcc
Confidence 00 00 000122346899999999999999994 46666663 34445666 78899888774
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 276 lVD 278 (386)
T PLN02306 276 VID 278 (386)
T ss_pred ccC
Confidence 333
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.015 Score=61.95 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=67.4
Q ss_pred ceEEEECccHH-HHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGam-G~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|||+|+. +--+...|+.. -.-.+..+|.|+|.++++++.+.. + .+. +.... +
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~-~~~l~~~ei~L~DId~~rl~~v~~--l---~~~-------------~~~~~----g 57 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDR-KEDFPLRELVLYDIDAERQEKVAE--A---VKI-------------LFKEN----Y 57 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhC-cccCCCCEEEEECCCHHHHHHHHH--H---HHH-------------HHHhh----C
Confidence 79999999984 11233334433 100112689999999987765221 1 110 11100 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-------------------------------
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------------------------- 171 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~------------------------------- 171 (461)
. . -.+..|+|.++|+++||+||..+-..
T Consensus 58 ~-~--------------------~~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~a 116 (437)
T cd05298 58 P-E--------------------IKFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYG 116 (437)
T ss_pred C-C--------------------eEEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHH
Confidence 0 0 14788999999999999999987432
Q ss_pred -----hHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 172 -----ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 172 -----~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.+.++++++.++.. ++.+|..+|.+..
T Consensus 117 lRtip~~~~i~~~i~~~~p----da~lin~tNP~~~ 148 (437)
T cd05298 117 LRSIGPMIELIDDIEKYSP----DAWILNYSNPAAI 148 (437)
T ss_pred HhhHHHHHHHHHHHHHHCC----CeEEEEecCcHHH
Confidence 34555566666543 5788888877654
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0054 Score=63.39 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=63.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|..+..-...++.-.. -.+|++|+|++++++++.+ .++. .+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~----i~~V~v~~r~~~~a~~~~~-----~~~~---------------~~----- 178 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLG----IEEIRLYDIDPAATAKLAR-----NLAG---------------PG----- 178 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCC----ceEEEEEeCCHHHHHHHHH-----HHHh---------------cC-----
Confidence 45789999999999888777664311 2799999999987664221 1100 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEE
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iII 194 (461)
.++.+.++.++++.+||+|+.||++.....+++. .++++ ++.|.
T Consensus 179 ------------------------~~v~~~~~~~~av~~ADIIvtaT~S~~~~Pvl~~--~~lkp---G~hV~ 222 (346)
T PRK07589 179 ------------------------LRIVACRSVAEAVEGADIITTVTADKTNATILTD--DMVEP---GMHIN 222 (346)
T ss_pred ------------------------CcEEEeCCHHHHHhcCCEEEEecCCCCCCceecH--HHcCC---CcEEE
Confidence 1356678999999999999999987543333322 35566 56543
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.012 Score=62.30 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=49.4
Q ss_pred ceEEEECccHHHH-HHHHHHHHhcCCCCCCeeEEEEecC-chhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 44 LRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIRIWRRP-GRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 44 mkI~IIGaGamG~-alA~~La~~~G~~~~~~~V~l~~r~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
|||+|||+|+.-+ .+...|+...-.+. ..+|.++|.+ +++++.+.. +.+. +....
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~-~~ei~L~Did~~~rl~~v~~-----~~~~-------------~~~~~---- 57 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELP-VTELVLVDIDEEEKLEIVGA-----LAKR-------------MVKKA---- 57 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCC-CCEEEEecCChHHHHHHHHH-----HHHH-------------HHHhh----
Confidence 7999999999643 23344554311011 2689999999 676654211 1110 01100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL 168 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV 168 (461)
+. . ..+..|+|.++|+.+||+||.++
T Consensus 58 ~~-~--------------------~~v~~t~d~~~al~gadfVi~~~ 83 (419)
T cd05296 58 GL-P--------------------IKVHLTTDRREALEGADFVFTQI 83 (419)
T ss_pred CC-C--------------------eEEEEeCCHHHHhCCCCEEEEEE
Confidence 00 0 14788999999999999999987
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0065 Score=61.65 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=55.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|.+|...+..++...+ ..+|.+|+|++++++++.+ .+.. . +
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~----~~~v~v~~r~~~~a~~~a~-----~~~~--------------~-~----- 174 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLP----VRRVWVRGRTAASAAAFCA-----HARA--------------L-G----- 174 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHH-----HHHh--------------c-C-----
Confidence 45789999999999999999875313 1589999999887664221 1100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~ 172 (461)
+ .+. ..+.++++.++|+||.|||+..
T Consensus 175 ----~--------------------~~~-~~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 175 ----P--------------------TAE-PLDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred ----C--------------------eeE-ECCHHHHhhcCCEEEEccCCCC
Confidence 0 122 4778888999999999999874
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0046 Score=63.34 Aligned_cols=79 Identities=23% Similarity=0.258 Sum_probs=56.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|.+|.+.+..|+...+ -.+|++|+|+.++++++.+ .+.. .+ +
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~----i~~v~V~~R~~~~a~~~a~-----~~~~-------------~~-g----- 179 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRD----IRSARIWARDSAKAEALAL-----QLSS-------------LL-G----- 179 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCC----ccEEEEECCCHHHHHHHHH-----HHHh-------------hc-C-----
Confidence 44689999999999999999874313 1579999999987664221 1110 00 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~ 172 (461)
..+...+|+++++.+||+|+.|||+..
T Consensus 180 ------------------------~~v~~~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 180 ------------------------IDVTAATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred ------------------------ceEEEeCCHHHHhccCCEEEEecCCCC
Confidence 024456888999999999999999853
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0051 Score=63.11 Aligned_cols=79 Identities=29% Similarity=0.337 Sum_probs=58.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+...++|||+|..+..-...+..-.+ -.+|.+|+|+++..++... .+... +
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~----~~~I~i~~r~~~~~e~~a~-----~l~~~--------------------~ 179 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRD----IREIRVYSRDPEAAEAFAA-----RLRKR--------------------G 179 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCC----ccEEEEEcCCHHHHHHHHH-----HHHhh--------------------c
Confidence 44679999999999999888875422 2689999999987764211 11100 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~ 172 (461)
+ ..+...++.++++++||+|+-|||+..
T Consensus 180 ~-----------------------~~v~a~~s~~~av~~aDiIvt~T~s~~ 207 (330)
T COG2423 180 G-----------------------EAVGAADSAEEAVEGADIVVTATPSTE 207 (330)
T ss_pred C-----------------------ccceeccCHHHHhhcCCEEEEecCCCC
Confidence 0 135678899999999999999999987
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.011 Score=60.58 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=29.8
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.+.||+|||+ |.+|+.+|..|+.. +.. .++.|+|++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~-~~~---~elvL~Di~ 43 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQN-PHV---SELSLYDIV 43 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcC-CCC---CEEEEEecC
Confidence 4569999999 99999999999865 421 589999993
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0061 Score=62.41 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=65.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++++|||.|++|..+|..+....| -+|..|++...... ...
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fg-----m~V~~~~~~~~~~~---------------------------~~~----- 186 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFN-----MPILYNARRHHKEA---------------------------EER----- 186 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCC-----CEEEEECCCCchhh---------------------------HHh-----
Confidence 34799999999999999999862325 68888887642100 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
..+.. .+++++++.||+|++++|- ..++.++ ++....+++ ++++|.+.-|
T Consensus 187 ------------------------~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~---ga~lIN~aRG 238 (323)
T PRK15409 187 ------------------------FNARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKS---SAIFINAGRG 238 (323)
T ss_pred ------------------------cCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECCCc
Confidence 01222 3788999999999999994 4566666 234445566 7889988877
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
=..+
T Consensus 239 ~vVd 242 (323)
T PRK15409 239 PVVD 242 (323)
T ss_pred cccC
Confidence 4443
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.005 Score=62.85 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=64.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.+|..+|..+.-- | -+|..|+|.... ..
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~f-g-----m~V~~~~~~~~~---------------------------~~--------- 185 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAF-G-----MRVLIGQLPGRP---------------------------AR--------- 185 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCCc---------------------------cc---------
Confidence 36899999999999999998744 6 789888775310 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH-HHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.. ..+++++++.||+|++++|- ..++.++. +....+++ ++++|.+.-|=
T Consensus 186 -------------------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~---ga~lIN~aRG~ 236 (317)
T PRK06487 186 -------------------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP---GALLINTARGG 236 (317)
T ss_pred -------------------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCC---CeEEEECCCcc
Confidence 00 12578889999999999994 46666662 33444566 78899888774
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 237 vVd 239 (317)
T PRK06487 237 LVD 239 (317)
T ss_pred ccC
Confidence 443
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0073 Score=61.77 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=74.7
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 38 ~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
|.....+.|+.||.+.||.-++...+++ | +.|..|+|...++++.-+ |+. +-.
T Consensus 1 m~q~~~~digLiGLaVMGqnLiLN~~d~-G-----f~v~~yNRT~skvD~fla-------nea-----------k~~--- 53 (487)
T KOG2653|consen 1 MSQTPKADIGLIGLAVMGQNLILNIADK-G-----FTVCAYNRTTSKVDEFLA-------NEA-----------KGT--- 53 (487)
T ss_pred CCCccccchhhhhHhhhhhhhhhccccc-C-----ceEEEeccchHhHHHHHH-------Hhh-----------cCC---
Confidence 3445568999999999999999999999 8 899999999988875211 110 000
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHH---HhcCCCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEE
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE---AVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~---av~~aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iI 193 (461)
++.-..++++ -++..-.|++-|++ ..+..++++|.|++.+ +.+|
T Consensus 54 -----------------------------~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I~~L~p~Lek---gDiI 101 (487)
T KOG2653|consen 54 -----------------------------KIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFIEELVPYLEK---GDII 101 (487)
T ss_pred -----------------------------cccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHHHHHHhhcCC---CCEE
Confidence 1122233443 35778899999986 5688888999999997 6677
Q ss_pred EEEeecC
Q 012547 194 ISLAKGV 200 (461)
Q Consensus 194 Is~tkGi 200 (461)
|.--|.-
T Consensus 102 IDGGNs~ 108 (487)
T KOG2653|consen 102 IDGGNSE 108 (487)
T ss_pred EeCCccc
Confidence 7654443
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0045 Score=62.60 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=28.6
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012547 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (461)
Q Consensus 43 ~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~ 79 (461)
-++|+||| .|.||..||..|.++ | ++|++|.
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~-g-----~tVtv~~ 189 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAA-N-----ATVTIAH 189 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhC-C-----CEEEEEC
Confidence 37999999 999999999999998 8 8999994
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.006 Score=61.85 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=57.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|..|.+-+..++.-.. -.+|.+|+|++++.+++.+ .+... + +
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~----i~~v~v~~r~~~~a~~f~~-----~~~~~-------------~-~----- 167 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYN----PKRIRVYSRNFDHARAFAE-----RFSKE-------------F-G----- 167 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCC----CCEEEEECCCHHHHHHHHH-----HHHHh-------------c-C-----
Confidence 45789999999999998888775312 2689999999987765321 11100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~ 172 (461)
..+.+.+++++++.+||+|+.||++..
T Consensus 168 ------------------------~~v~~~~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 168 ------------------------VDIRPVDNAEAALRDADTITSITNSDT 194 (301)
T ss_pred ------------------------CcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 135667899999999999999999863
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=58.78 Aligned_cols=68 Identities=22% Similarity=0.197 Sum_probs=48.3
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-++-.|-.-.--+..|+...+. +....++.|+|+|.+|.+++..|+.. |. .+|++++|+.++++.
T Consensus 95 ~~g~l~G~NTD~~G~~~~l~~~~~~-~~~~k~vlVlGaGg~a~ai~~aL~~~-g~----~~V~v~~R~~~~a~~ 162 (278)
T PRK00258 95 EDGRLIGDNTDGIGFVRALEERLGV-DLKGKRILILGAGGAARAVILPLLDL-GV----AEITIVNRTVERAEE 162 (278)
T ss_pred eCCEEEEEcccHHHHHHHHHhccCC-CCCCCEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence 4566666665555555555542322 22346899999999999999999987 62 589999999876654
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0061 Score=64.15 Aligned_cols=52 Identities=21% Similarity=0.401 Sum_probs=42.9
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+..++.+|... ..|+.|||+|-||...|.+|+.. |. ..|++.+|+.++++.
T Consensus 166 v~lA~~~~~~L~--~~~vlvIGAGem~~lva~~L~~~-g~----~~i~IaNRT~erA~~ 217 (414)
T COG0373 166 VELAKRIFGSLK--DKKVLVIGAGEMGELVAKHLAEK-GV----KKITIANRTLERAEE 217 (414)
T ss_pred HHHHHHHhcccc--cCeEEEEcccHHHHHHHHHHHhC-CC----CEEEEEcCCHHHHHH
Confidence 456677886533 36899999999999999999998 73 789999999987764
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.02 Score=55.40 Aligned_cols=82 Identities=20% Similarity=0.374 Sum_probs=59.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|+|++||+|++|..+...+-+. - .+..-|.+|+|+.+++.++. . .+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~--~-~~~e~v~v~D~~~ek~~~~~---------~-------------~~--------- 46 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG--R-VDFELVAVYDRDEEKAKELE---------A-------------SV--------- 46 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC--C-cceeEEEEecCCHHHHHHHH---------h-------------hc---------
Confidence 6899999999999998887643 1 11146889999988665311 0 01
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHH
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~ 182 (461)
.....+++++.+.+.|+++.|-.++++++...++..
T Consensus 47 -----------------------~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~ 82 (255)
T COG1712 47 -----------------------GRRCVSDIDELIAEVDLVVEAASPEAVREYVPKILK 82 (255)
T ss_pred -----------------------CCCccccHHHHhhccceeeeeCCHHHHHHHhHHHHh
Confidence 112237778878999999999999999998877654
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0083 Score=61.49 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=66.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++++|||.|.+|.++|..+. ..| -+|..|+|++. -+. .. ..
T Consensus 146 gktvGIiG~GrIG~avA~r~~-~Fg-----m~v~y~~~~~~-~~~----------~~-------------~~-------- 187 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLK-GFG-----MKVLYYDRSPN-PEA----------EK-------------EL-------- 187 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCC-----CEEEEECCCCC-hHH----------Hh-------------hc--------
Confidence 379999999999999999998 435 78999998863 110 00 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH-HHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+..+.. +++.+++||+|.+.+|. ...+.++. +....+++ +.++|.+.-|=
T Consensus 188 ------------------------~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~---ga~lVNtaRG~ 239 (324)
T COG1052 188 ------------------------GARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKP---GAILVNTARGG 239 (324)
T ss_pred ------------------------Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCC---CeEEEECCCcc
Confidence 123333 78889999999999995 46666662 33444665 67888877774
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 240 ~VD 242 (324)
T COG1052 240 LVD 242 (324)
T ss_pred ccC
Confidence 443
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0063 Score=64.44 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=37.1
Q ss_pred HHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 32 ~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++.+|... ..+|+|||+|.||..++..|... |. .+|++|+|+.++++
T Consensus 171 a~~~~~~l~--~~~VlViGaG~iG~~~a~~L~~~-G~----~~V~v~~rs~~ra~ 218 (417)
T TIGR01035 171 AERIFGSLK--GKKALLIGAGEMGELVAKHLLRK-GV----GKILIANRTYERAE 218 (417)
T ss_pred HHHHhCCcc--CCEEEEECChHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHH
Confidence 344554333 36899999999999999999887 62 68999999976544
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0056 Score=62.46 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=63.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.+|..+|..+.-- | -+|..|++... + ..
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f-g-----~~V~~~~~~~~--~--------------------------~~-------- 184 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL-G-----MKVLYAEHKGA--S--------------------------VC-------- 184 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC-C-----CEEEEECCCcc--c--------------------------cc--------
Confidence 37999999999999999988644 6 78888876431 0 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
... ..+++++++.||+|++++| +..++.++ ++....+++ ++++|.+.-|=
T Consensus 185 ------------------------~~~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 236 (314)
T PRK06932 185 ------------------------REG-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKP---TAFLINTGRGP 236 (314)
T ss_pred ------------------------ccc-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCC---CeEEEECCCcc
Confidence 000 1367888999999999999 45566655 233444566 78899888775
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 237 ~Vd 239 (314)
T PRK06932 237 LVD 239 (314)
T ss_pred ccC
Confidence 444
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.011 Score=59.80 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=29.4
Q ss_pred EECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 48 IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|||+|.+|+++|..|+.. ++. .++.|+|++++.++
T Consensus 1 iIGaG~VG~~~a~~l~~~-~l~---~el~L~Di~~~~~~ 35 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ-GIA---DEIVLIDINKDKAE 35 (299)
T ss_pred CCCcCHHHHHHHHHHHhc-CCC---CEEEEEeCCCChhh
Confidence 799999999999999887 642 47999999887654
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0094 Score=60.74 Aligned_cols=78 Identities=26% Similarity=0.319 Sum_probs=50.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|..|..-+..++.-.+ -.+|.+|+|+++.++++.+ .+. . + +
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~----i~~v~v~~r~~~~~~~~~~-----~~~-------------~-~-~----- 177 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRP----IKEVRVYSRSPERAEAFAA-----RLR-------------D-L-G----- 177 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS------SEEEEE-SSHHHHHHHHH-----HHH-------------C-C-C-----
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCC----ceEEEEEccChhHHHHHHH-----hhc-------------c-c-c-----
Confidence 34689999999999998888876422 2689999999987665221 111 0 0 1
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~ 172 (461)
..+...+|.++++++||+|+.|||+..
T Consensus 178 ------------------------~~v~~~~~~~~av~~aDii~taT~s~~ 204 (313)
T PF02423_consen 178 ------------------------VPVVAVDSAEEAVRGADIIVTATPSTT 204 (313)
T ss_dssp ------------------------TCEEEESSHHHHHTTSSEEEE----SS
T ss_pred ------------------------ccceeccchhhhcccCCEEEEccCCCC
Confidence 146778999999999999999999876
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0084 Score=56.51 Aligned_cols=87 Identities=20% Similarity=0.135 Sum_probs=51.5
Q ss_pred eEEEECccHHHHHHHH--HHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 45 RIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 45 kI~IIGaGamG~alA~--~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
||+|||+|+.-+..-. .+... ..+. ..++.|+|+++++++.+.. +.+.+.+ .. +
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~-~~l~-~~ei~L~Did~~RL~~~~~--~~~~~~~----------------~~----~ 56 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRT-EELS-GSEIVLMDIDEERLEIVER--LARRMVE----------------EA----G 56 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCT-TTST-EEEEEEE-SCHHHHHHHHH--HHHHHHH----------------HC----T
T ss_pred CEEEECCchHhhHHHHHHHHhcC-ccCC-CcEEEEEcCCHHHHHHHHH--HHHHHHH----------------hc----C
Confidence 7999999987665332 23332 2222 2589999999988775321 1111111 00 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHH
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEV 176 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~v 176 (461)
. . ..+..|+|.++|+++||+||.++-....+..
T Consensus 57 ~-~--------------------~~v~~ttd~~eAl~gADfVi~~irvGg~~~r 89 (183)
T PF02056_consen 57 A-D--------------------LKVEATTDRREALEGADFVINQIRVGGLEAR 89 (183)
T ss_dssp T-S--------------------SEEEEESSHHHHHTTESEEEE---TTHHHHH
T ss_pred C-C--------------------eEEEEeCCHHHHhCCCCEEEEEeeecchHHH
Confidence 0 0 1478899999999999999999976554443
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=50.60 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=31.3
Q ss_pred cCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 159 ~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.++|+||+|+|.....+++..+.+.+.+ ++++|.++.-+.
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~---g~~viD~s~~~~ 103 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEA---GVKVIDLSSAFR 103 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcC---CCEEEECCcccc
Confidence 5799999999999999988766655565 688888775443
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.023 Score=50.32 Aligned_cols=36 Identities=28% Similarity=0.240 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..||+|+|+|.+|+.+|..|+.. |. .+++++|.+.=
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~-Gv----~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS-GV----GKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH-TT----SEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-CC----CceeecCCcce
Confidence 46899999999999999999999 82 58999998753
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.013 Score=55.85 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||+|+|+|.+|+.++..|+.. |. ..++++|.+.
T Consensus 22 s~VlIiG~gglG~evak~La~~-GV----g~i~lvD~d~ 55 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLS-GI----GSLTILDDRT 55 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHc-CC----CEEEEEECCc
Confidence 6899999999999999999999 82 6899999875
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.025 Score=47.33 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=53.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..||+|+|+|..|.+++..+-+..|+ .-+.+++.+++..-. ...
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~----~i~~~~dv~~~~~G~-------------------------~i~------ 46 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGF----GIVAVFDVDPEKIGK-------------------------EIG------ 46 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCE----CEEEEEEECTTTTTS-------------------------EET------
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCC----CCEEEEEcCCCccCc-------------------------EEC------
Confidence 457899999999999998655444251 235677777753210 011
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHH
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~ 182 (461)
.+.+..+++++.+. .|+-+++||+...++++.++..
T Consensus 47 -------------------------gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~~~~~~ 84 (96)
T PF02629_consen 47 -------------------------GIPVYGSMDELEEFIEIDIAIITVPAEAAQEVADELVE 84 (96)
T ss_dssp -------------------------TEEEESSHHHHHHHCTTSEEEEES-HHHHHHHHHHHHH
T ss_pred -------------------------CEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHHHHHHH
Confidence 23333445554444 9999999999999999888765
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.013 Score=59.73 Aligned_cols=95 Identities=16% Similarity=0.223 Sum_probs=64.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.+..+++|||+|..|..-+..++.- ++-.+|.+|+|++++++++.+ .+++ . +
T Consensus 126 ~d~~~l~iiG~G~qA~~~~~a~~~v----~~i~~v~v~~r~~~~a~~~~~-----~~~~--------------~-~---- 177 (315)
T PRK06823 126 QHVSAIGIVGTGIQARMQLMYLKNV----TDCRQLWVWGRSETALEEYRQ-----YAQA--------------L-G---- 177 (315)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhc----CCCCEEEEECCCHHHHHHHHH-----HHHh--------------c-C----
Confidence 3557899999999999988887754 122689999999987765321 1110 0 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEE
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs 195 (461)
..+.+.++.++++.+||+|+.||++.. .+++ ..++++ ++.|+.
T Consensus 178 -------------------------~~v~~~~~~~~av~~ADIV~taT~s~~--P~~~--~~~l~~---G~hi~~ 220 (315)
T PRK06823 178 -------------------------FAVNTTLDAAEVAHAANLIVTTTPSRE--PLLQ--AEDIQP---GTHITA 220 (315)
T ss_pred -------------------------CcEEEECCHHHHhcCCCEEEEecCCCC--ceeC--HHHcCC---CcEEEe
Confidence 135667889999999999999999763 3331 134555 565543
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.036 Score=55.01 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=83.4
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+....||+|+|+|++|.|.|..+... |+- .++.++|-++++++- ++++-+| ...+++
T Consensus 17 ~~~~~KItVVG~G~VGmAca~siL~k-~La---del~lvDv~~dklkG-------E~MDLqH--------~s~f~~---- 73 (332)
T KOG1495|consen 17 EFKHNKITVVGVGQVGMACAISILLK-GLA---DELVLVDVNEDKLKG-------EMMDLQH--------GSAFLS---- 73 (332)
T ss_pred cccCceEEEEccchHHHHHHHHHHHh-hhh---hceEEEecCcchhhh-------hhhhhcc--------cccccc----
Confidence 33457999999999999999987766 531 578999999876542 1222111 001111
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch------------hHHHHHHHHHHHhhcc
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------ETKEVFEEISRYWKER 187 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~------------~~~~vl~~i~~~l~~~ 187 (461)
.+++....|... -++++++|+..-.. .--++++.|.|.+-..
T Consensus 74 -------------------------~~~V~~~~Dy~~-sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y 127 (332)
T KOG1495|consen 74 -------------------------TPNVVASKDYSV-SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY 127 (332)
T ss_pred -------------------------CCceEecCcccc-cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 135777777754 67999999988442 1233445555533221
Q ss_pred CCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcch
Q 012547 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNI 236 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~ 236 (461)
..+++++.++|.++.- .-+.++..|.|..+ ++=+|.|.
T Consensus 128 Spd~~llvvSNPVDil----------TYv~wKLSgfP~nR-ViGsGcnL 165 (332)
T KOG1495|consen 128 SPDCILLVVSNPVDIL----------TYVTWKLSGFPKNR-VIGSGCNL 165 (332)
T ss_pred CCCeEEEEecCchHHH----------HHHHHHHcCCcccc-eeccCcCc
Confidence 2268888888877643 13346666766555 34466664
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.019 Score=58.93 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=33.8
Q ss_pred EEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 149 ~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.+.+|+++.++ +.|+|++|+|+....+++.+... . +..|+ +-|-+...
T Consensus 51 ~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~---a---GkhVl-~EKPla~t 100 (346)
T PRK11579 51 TVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALE---A---GKHVV-VDKPFTVT 100 (346)
T ss_pred ceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---C---CCeEE-EeCCCCCC
Confidence 34578888775 57999999999888777766543 2 34444 78877654
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.021 Score=66.66 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCC---------CCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLR---------DKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~---------~~~~V~l~~r~~~~~~ 86 (461)
+++||+|||+|.||...+..|++. .-.. +...|.+.+++.+.++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~ 620 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAK 620 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHH
Confidence 356999999999999999999976 3100 0013888888876554
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.016 Score=59.81 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=32.6
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
|.++...++|+||+|+|....++++.++.. . +..||.++.-+-.
T Consensus 61 ~~~~~~~~~DvVf~alP~~~s~~~~~~~~~---~---G~~VIDlS~~fR~ 104 (346)
T TIGR01850 61 DEEEIAEDADVVFLALPHGVSAELAPELLA---A---GVKVIDLSADFRL 104 (346)
T ss_pred CHHHhhcCCCEEEECCCchHHHHHHHHHHh---C---CCEEEeCChhhhc
Confidence 445555689999999999988888877653 2 5788888865543
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.013 Score=59.89 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=27.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~-l~~r~~ 82 (461)
++||+|||+|+||...+..+..+.+ .++. +|+|++
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd-----~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPD-----MELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCC-----cEEEEEEcCCc
Confidence 4799999999999999988876522 4444 577774
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.02 Score=61.32 Aligned_cols=67 Identities=22% Similarity=0.168 Sum_probs=46.9
Q ss_pred cccccccCcc--cccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 8 VNDSLSSNGL--IHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 8 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
||||...... .|-|.-|+ +|-+-|..+..- .-.+|+|+|.|.+|..+|..+..- | .+|+++++++.+
T Consensus 221 vnds~~K~~fDn~yGtgqS~---~d~i~r~t~i~L-aGKtVvViGyG~IGr~vA~~aka~-G-----a~VIV~e~dp~r 289 (477)
T PLN02494 221 VNDSVTKSKFDNLYGCRHSL---PDGLMRATDVMI-AGKVAVICGYGDVGKGCAAAMKAA-G-----ARVIVTEIDPIC 289 (477)
T ss_pred EcChhhhhhhhccccccccH---HHHHHHhcCCcc-CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCchh
Confidence 6777654322 23333444 666666655422 236899999999999999999866 7 789999988753
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.028 Score=55.93 Aligned_cols=81 Identities=20% Similarity=0.195 Sum_probs=55.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+||+|||+|++|..++..+... + .. +.+ +.+++|+.+..+. +..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~-~-~~-~~~l~~V~~~~~~~~~~--------------------------~~~----- 47 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLAD-A-AQ-PCQLAALTRNAADLPPA--------------------------LAG----- 47 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcC-C-CC-ceEEEEEecCCHHHHHH--------------------------hhc-----
Confidence 47999999999999999998754 2 11 133 3345555433221 100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHH-hcCCCEEEEcCCchhHHHHHHHHHH
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~a-v~~aDiIIiaVps~~~~~vl~~i~~ 182 (461)
...+.+|+++. ...+|+|+.|-.++.+++....+..
T Consensus 48 -------------------------~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~iL~ 84 (267)
T PRK13301 48 -------------------------RVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEGCLT 84 (267)
T ss_pred -------------------------cCcccCCHHHHhhcCCCEEEECCCHHHHHHHHHHHHh
Confidence 12345677774 5789999999999999998888754
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.011 Score=60.40 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=33.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+..+|+|||+|.+|...+..++...+ -..|.+|+|++++.++
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~----i~~v~v~~r~~~~~~~ 169 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFD----LEEVRVYDRTKSSAEK 169 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCC----ceEEEEECCCHHHHHH
Confidence 45789999999999999988875412 2689999999876654
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.054 Score=50.45 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=29.8
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
||+|||+|.+|+.++..|++. |. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GV----GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 689999999999999999999 82 4799999986
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.023 Score=57.50 Aligned_cols=98 Identities=19% Similarity=0.185 Sum_probs=64.2
Q ss_pred CCceEEEECccHHH-HHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGAGAWG-SVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG-~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+++||+|||+|.++ ...+..+... +-. -.-|-+++++++++++..++ |
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~-~~~--~~~vav~d~~~~~a~~~a~~---------------------~------- 50 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAAL-GGG--LELVAVVDRDPERAEAFAEE---------------------F------- 50 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhC-CCc--eEEEEEecCCHHHHHHHHHH---------------------c-------
Confidence 46899999999555 5577777765 300 03467788888765532110 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCe-EEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
++ ...+|+++.+++ .|+|+||+|+....+++... +.. +.. |.|-
T Consensus 51 --------------------------~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~A---L~a---Gkh-Vl~E 97 (342)
T COG0673 51 --------------------------GIAKAYTDLEELLADPDIDAVYIATPNALHAELALAA---LEA---GKH-VLCE 97 (342)
T ss_pred --------------------------CCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHH---Hhc---CCE-EEEc
Confidence 11 456788887765 59999999999888877443 333 343 4588
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
|.+...
T Consensus 98 KPla~t 103 (342)
T COG0673 98 KPLALT 103 (342)
T ss_pred CCCCCC
Confidence 888764
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.035 Score=52.91 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=31.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..||.|||+|.+|+.+|..|+.. |. .+++++|.+.-
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv----~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GV----GTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CC----CeEEEecCCEE
Confidence 36899999999999999999999 82 58999998853
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.023 Score=59.30 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=34.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
...+|.|||+|.+|...+..+... | .+|++++|+.++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-G-----a~V~v~d~~~~~~~ 204 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-G-----ATVTILDINIDRLR 204 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHH
Confidence 557899999999999999999987 8 78999999876554
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.018 Score=53.58 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=33.6
Q ss_pred HHHHHhhcCCCCCCceEEEECccHH-HHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 30 DELRRLMGKAEGDPLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 30 ~~~~~~~~~~~~~~mkI~IIGaGam-G~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+.++..++ +-...||.|||+|-| |..+|..|.+. | .+|++.+|+.
T Consensus 33 ~l~~~~~~--~l~gk~vlViG~G~~~G~~~a~~L~~~-g-----~~V~v~~r~~ 78 (168)
T cd01080 33 ELLKRYGI--DLAGKKVVVVGRSNIVGKPLAALLLNR-N-----ATVTVCHSKT 78 (168)
T ss_pred HHHHHcCC--CCCCCEEEEECCcHHHHHHHHHHHhhC-C-----CEEEEEECCc
Confidence 34455543 334478999999987 88899999988 7 6788887763
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.054 Score=57.19 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=44.4
Q ss_pred cccccccCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
||||..... .+..-|.=+.-+|.+-|..+.. ..-.+|+|+|+|.+|..+|..+... | .+|+++++++.+
T Consensus 162 vnds~~K~~-fDn~yg~g~s~~~~i~r~t~~~-l~Gk~VvViG~G~IG~~vA~~ak~~-G-----a~ViV~d~dp~r 230 (406)
T TIGR00936 162 VNDAYTKSL-FDNRYGTGQSTIDGILRATNLL-IAGKTVVVAGYGWCGKGIAMRARGM-G-----ARVIVTEVDPIR 230 (406)
T ss_pred ecchhhchh-hhcccccchhHHHHHHHhcCCC-CCcCEEEEECCCHHHHHHHHHHhhC-c-----CEEEEEeCChhh
Confidence 567655432 1211122233445554544321 1235899999999999999999877 7 889999988753
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.054 Score=57.55 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=36.7
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
++-+++.-+.. -.-.+|+|+|+|.+|..+|..+... | .+|+++++++.+
T Consensus 199 ~~ai~rat~~~-l~Gk~VlViG~G~IG~~vA~~lr~~-G-----a~ViV~d~dp~r 247 (425)
T PRK05476 199 LDGIKRATNVL-IAGKVVVVAGYGDVGKGCAQRLRGL-G-----ARVIVTEVDPIC 247 (425)
T ss_pred HHHHHHhccCC-CCCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCchh
Confidence 45555443221 1236899999999999999999887 7 889999998754
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.053 Score=55.92 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|.|||+|.+|+.+|..|+.. |. ..++++|++.
T Consensus 25 ~~VlIiG~GglGs~va~~La~a-Gv----g~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA-GI----GKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCc
Confidence 6899999999999999999999 81 4899999885
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.017 Score=59.19 Aligned_cols=95 Identities=18% Similarity=0.322 Sum_probs=64.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|+|.|.+|.++|..|..- | ..+.-+.|++..-+. .. .|..
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F-g-----~~i~y~~r~~~~~~~----------~~------------~~~~-------- 206 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF-G-----CVILYHSRTQLPPEE----------AY------------EYYA-------- 206 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc-c-----ceeeeecccCCchhh----------HH------------Hhcc--------
Confidence 6899999999999999999864 5 455555565432221 00 0100
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH-HHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
. ..|..+.+.++|+|++|.|- ..++.++. ++...+++ +.++|.+.-|=.
T Consensus 207 -------------------------~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~---g~vlVN~aRG~i 257 (336)
T KOG0069|consen 207 -------------------------E-FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKD---GAVLVNTARGAI 257 (336)
T ss_pred -------------------------c-ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCC---CeEEEecccccc
Confidence 1 23556778899999999995 57777774 46666776 678888887744
Q ss_pred cc
Q 012547 202 AE 203 (461)
Q Consensus 202 ~~ 203 (461)
.+
T Consensus 258 id 259 (336)
T KOG0069|consen 258 ID 259 (336)
T ss_pred cc
Confidence 43
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.04 Score=55.32 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=46.5
Q ss_pred CcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+|-++-.|-.-.-=+.-||+.-...+....++.|||+|.+|.+++..|++. |. .+|++++|+.++++.
T Consensus 97 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~-G~----~~i~I~nRt~~ka~~ 164 (282)
T TIGR01809 97 NGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASL-GV----TDITVINRNPDKLSR 164 (282)
T ss_pred CCcEEEecCCHHHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHc-CC----CeEEEEeCCHHHHHH
Confidence 555555555544444555542211122346899999999999999999988 72 589999999877654
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.062 Score=49.67 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=33.1
Q ss_pred hhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 28 RLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 28 ~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
-+|-+.|-.+..-. -+++.|+|.|..|..+|..|... | .+|+++++++-
T Consensus 9 ~~d~i~r~t~~~l~-Gk~vvV~GYG~vG~g~A~~lr~~-G-----a~V~V~e~DPi 57 (162)
T PF00670_consen 9 LVDGIMRATNLMLA-GKRVVVIGYGKVGKGIARALRGL-G-----ARVTVTEIDPI 57 (162)
T ss_dssp HHHHHHHHH-S--T-TSEEEEE--SHHHHHHHHHHHHT-T------EEEEE-SSHH
T ss_pred HHHHHHhcCceeeC-CCEEEEeCCCcccHHHHHHHhhC-C-----CEEEEEECChH
Confidence 34555555443332 25899999999999999999988 8 89999999984
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.063 Score=52.32 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=41.4
Q ss_pred HhhHHHHHhhcCCC---CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhh
Q 012547 27 ERLDELRRLMGKAE---GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (461)
Q Consensus 27 ~~~~~~~~~~~~~~---~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (461)
+|.+.=++++|... -...||+|+|+|..|+.++..|+.. |. .+++++|.+.-....+
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~-Gv----g~i~lvD~D~ve~sNL 67 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAA-GV----GRILLIDEQTPELSNL 67 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCccChhhh
Confidence 46665555665432 2236899999999999999999999 83 6899998776444433
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.061 Score=56.97 Aligned_cols=50 Identities=16% Similarity=0.120 Sum_probs=38.3
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
+|.+-+..+..- .-.+|+|+|+|.+|..++..+... | .+|+++++++.+.
T Consensus 189 ~~~i~r~t~~~l-~GktVvViG~G~IG~~va~~ak~~-G-----a~ViV~d~d~~R~ 238 (413)
T cd00401 189 IDGIKRATDVMI-AGKVAVVAGYGDVGKGCAQSLRGQ-G-----ARVIVTEVDPICA 238 (413)
T ss_pred HHHHHHhcCCCC-CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEECChhhH
Confidence 566666554422 235899999999999999998877 8 7899999987644
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.027 Score=51.63 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=31.8
Q ss_pred EEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 46 I~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|.|+|+ |.+|..++..|.+. | ++|++..|++++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~-----~~V~~~~R~~~~~~ 36 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-G-----HEVTALVRSPSKAE 36 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-T-----SEEEEEESSGGGHH
T ss_pred eEEECCCChHHHHHHHHHHHC-C-----CEEEEEecCchhcc
Confidence 789997 99999999999999 7 99999999987554
|
... |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.015 Score=60.65 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=30.3
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhh
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (461)
|.|+|+|.+|.+++..|++. + .+ +|++.+|+.+++++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~-~----~~~~v~va~r~~~~~~~ 38 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR-G----PFEEVTVADRNPEKAER 38 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT-T----CE-EEEEEESSHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC-C----CCCcEEEEECCHHHHHH
Confidence 78999999999999999988 4 25 89999999987664
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.03 Score=60.40 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=47.4
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-++-.|-.-.-=+.-||+. +. +...++++|+|+|.+|.+++..|++. | .+|.+++|+.++++.
T Consensus 305 ~~g~l~G~NTD~~G~~~~l~~~-~~-~~~~k~vlIiGaGgiG~aia~~L~~~-G-----~~V~i~~R~~~~~~~ 370 (477)
T PRK09310 305 RNGKIEGYNTDGEGLFSLLKQK-NI-PLNNQHVAIVGAGGAAKAIATTLARA-G-----AELLIFNRTKAHAEA 370 (477)
T ss_pred eCCEEEEEecCHHHHHHHHHhc-CC-CcCCCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 3666666665555555555542 11 22346899999999999999999998 8 799999998765543
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.043 Score=47.71 Aligned_cols=84 Identities=20% Similarity=0.253 Sum_probs=55.9
Q ss_pred ceEEEEC----ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 44 LRIVGVG----AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 44 mkI~IIG----aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
++|+||| .+.+|..+...|.+. | ++|+.++.+.+.++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~-G-----~~v~~Vnp~~~~i~--------------------------------- 41 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA-G-----YEVYPVNPKGGEIL--------------------------------- 41 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT-T------EEEEESTTCSEET---------------------------------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC-C-----CEEEEECCCceEEC---------------------------------
Confidence 4799999 699999999999988 8 78887765542211
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
++....++++.-...|++++++|+..+.++++++... . .--+.++.|
T Consensus 42 ---------------------------G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~-g-----~~~v~~~~g 88 (116)
T PF13380_consen 42 ---------------------------GIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAAL-G-----VKAVWLQPG 88 (116)
T ss_dssp ---------------------------TEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHH-T------SEEEE-TT
T ss_pred ---------------------------cEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHc-C-----CCEEEEEcc
Confidence 2334455555236789999999999999999998764 2 223556667
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.038 Score=57.86 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=56.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|..|..-...++.- - .+-.+|.+|+|++++++++.+ .+.. .++++
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v-~--~~i~~V~v~~r~~~~a~~f~~-----~~~~-------------~~~~~---- 208 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAV-C--PGIDTIKIKGRGQKSLDSFAT-----WVAE-------------TYPQI---- 208 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-c--CCccEEEEECCCHHHHHHHHH-----HHHH-------------hcCCC----
Confidence 457899999999999999888763 1 001589999999987765321 1111 01100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~ 171 (461)
..+.+.+|.++++.+||+|+.||++.
T Consensus 209 ------------------------~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 209 ------------------------TNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred ------------------------ceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 02566789999999999999999753
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.071 Score=47.53 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=29.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
||.|||+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv----~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GV----GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC----CEEEEEcCCC
Confidence 689999999999999999999 82 4799998874
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.02 Score=57.58 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=27.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEE
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIW 78 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~ 78 (461)
++|+|||. |.||..+|..|.++ | ++|++|
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~-g-----atVtv~ 188 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK-N-----ATVTLT 188 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC-C-----CEEEEE
Confidence 68999999 99999999999998 7 899999
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.041 Score=55.77 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=33.5
Q ss_pred HHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 154 LQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 154 l~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+++.++++|+||.|+-+...+.++..+....+ .++|+..-|++
T Consensus 102 l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~-----k~~I~aalGfd 144 (307)
T cd01486 102 LEELIKDHDVIFLLTDSRESRWLPTLLSAAKN-----KLVINAALGFD 144 (307)
T ss_pred HHHHHhhCCEEEECCCCHHHHHHHHHHHHHhC-----CcEEEEEeccc
Confidence 55778999999999999999998888876433 46777666664
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.022 Score=53.50 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=34.4
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
..+++.|+|+ |.+|.+++..|++. | ++|++++|+.++++.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~-g-----~~V~l~~R~~~~~~~ 67 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLARE-G-----ARVVLVGRDLERAQK 67 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHHH
Confidence 3479999996 99999999999988 7 899999999776553
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.055 Score=46.06 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=31.2
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
|.|+|.|.+|..++..|.+. + .+|.+++++++.++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~-----~~vvvid~d~~~~~~ 36 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-G-----IDVVVIDRDPERVEE 36 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-T-----SEEEEEESSHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhC-C-----CEEEEEECCcHHHHH
Confidence 67999999999999999987 5 699999999987664
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.082 Score=53.65 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=27.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~ 83 (461)
+++||+|||+|.+|+.+...+.+. . ..++ .+++++++
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~-~----~velvAVvdid~e 40 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRS-E----HLEPGAMVGIDPE 40 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcC-C----CcEEEEEEeCChh
Confidence 358999999999999988777654 2 1444 46777764
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.053 Score=54.56 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=43.9
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCc
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG 82 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~ 82 (461)
.+|-++-.|-.-.-=..-||..+. +...+++.|+|+|..|.+++..|++. | . +|++++|+.
T Consensus 99 ~~g~l~G~NTD~~G~~~~l~~~~~--~~~~k~vlI~GAGGagrAia~~La~~-G-----~~~V~I~~R~~ 160 (289)
T PRK12548 99 DDGKLTGHITDGLGFVRNLREHGV--DVKGKKLTVIGAGGAATAIQVQCALD-G-----AKEITIFNIKD 160 (289)
T ss_pred ECCEEEEEecCHHHHHHHHHhcCC--CcCCCEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEeCCc
Confidence 456666666555544555554332 22335799999999999999999988 8 5 599999987
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.058 Score=55.46 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=59.3
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+|||+|+|| |..|..+...|++. |. +..++....++.+.-+. ..+.+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~-~h--p~~~l~~l~s~~~~g~~------------------------l~~~g----- 48 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER-NF--PVDKLRLLASARSAGKE------------------------LSFKG----- 48 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CC--CcceEEEEEccccCCCe------------------------eeeCC-----
Confidence 379999997 99999999999987 51 01244666665432111 00100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
..+.+.+.....+.++|+||+|+|+...++++.++.. . +..||.++.-+
T Consensus 49 ------------------------~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~~~~~~---~---G~~VIDlS~~~ 97 (334)
T PRK14874 49 ------------------------KELKVEDLTTFDFSGVDIALFSAGGSVSKKYAPKAAA---A---GAVVIDNSSAF 97 (334)
T ss_pred ------------------------ceeEEeeCCHHHHcCCCEEEECCChHHHHHHHHHHHh---C---CCEEEECCchh
Confidence 0122221111235789999999999988888877643 3 56778766443
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.064 Score=51.26 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=30.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
..++|.|||+|.+|...+..|.+. | ++|++++++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~-g-----a~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY-G-----AHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEcCC
Confidence 346999999999999999999998 8 899999865
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.074 Score=54.85 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=21.8
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDS 65 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~ 65 (461)
+++||+|+|| |..|..+...|.+.
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~ 27 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEER 27 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhC
Confidence 4589999998 99999999999976
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.058 Score=56.58 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=30.4
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++|||+|+|| |..|..+...|..+ - .++|+++.++..
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~h-P----~~el~~l~s~~s 74 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANH-P----DFEITVMTADRK 74 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhC-C----CCeEEEEEChhh
Confidence 5679999998 99999999999876 2 268888887643
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.1 Score=50.53 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.||.|+|+|.+|+.+|..|+.. |. .+++++|.+.-
T Consensus 22 ~~VlivG~GglGs~va~~La~~-Gv----g~i~lvD~D~v 56 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA-GV----GKLGLVDDDVV 56 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCEE
Confidence 5899999999999999999999 82 68999987753
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.14 Score=51.67 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=26.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~ 84 (461)
+||+|||+|.||..++..+.+. . +.++ -+++++++.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~----~~elvaV~d~d~es 38 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-E----HLEMVAMVGIDPES 38 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-C----CcEEEEEEeCCccc
Confidence 6999999999999887776644 2 1444 467777653
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.12 Score=46.27 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=62.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+.+||.+||+| .|..+|..|++. | ++|+.+|.+++.++.++... ...+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~-G-----~~ViaIDi~~~aV~~a~~~~---------------------~~~v~--- 64 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKES-G-----FDVIVIDINEKAVEKAKKLG---------------------LNAFV--- 64 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHhC---------------------CeEEE---
Confidence 34799999999 999999999998 8 99999999998665422110 11100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKE 186 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~ 186 (461)
. .+ +..++ +..++||+|.-.=|+..+..-+-+++.-++.
T Consensus 65 d------------------------Dl-f~p~~-~~y~~a~liysirpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 65 D------------------------DL-FNPNL-EIYKNAKLIYSIRPPRDLQPFILELAKKINV 103 (134)
T ss_pred C------------------------cC-CCCCH-HHHhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 0 11 12333 3468899999999998888878888776654
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.13 Score=48.83 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||+|||+|..|+.++..|+.. |. .+++++|.+.
T Consensus 20 s~VlviG~gglGsevak~L~~~-GV----g~i~lvD~d~ 53 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLA-GI----DSITIVDHRL 53 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEECCc
Confidence 6899999999999999999999 83 6899999875
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.15 Score=52.75 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=27.2
Q ss_pred CeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHH
Q 012547 147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (461)
Q Consensus 147 ~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~ 181 (461)
.+.+..++++...++|+||.|+|+....+.++...
T Consensus 65 ~i~V~~~~~el~~~vDVVIdaT~~~~~~e~a~~~~ 99 (341)
T PRK04207 65 GIPVAGTIEDLLEKADIVVDATPGGVGAKNKELYE 99 (341)
T ss_pred ceEEcCChhHhhccCCEEEECCCchhhHHHHHHHH
Confidence 35666777777788999999999988877776544
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.058 Score=59.18 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
-+|.|+|+|.+|..+|..|.+. | ++|.+++.++++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~-g-----~~vvvId~d~~~~~~ 455 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA-G-----IPLVVIETSRTRVDE 455 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 5799999999999999999998 7 999999999987765
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.099 Score=56.14 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=31.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
-++|+|||.|.+|..+|..+... | .+|+++++++..
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~-G-----a~ViV~e~dp~~ 289 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGF-G-----ARVVVTEIDPIC 289 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCchh
Confidence 36899999999999999999877 7 889999888643
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.12 Score=52.15 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=48.6
Q ss_pred CcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+|-++-.|-.-.--+.-|++.-.-.+..-.+|.|+|||-.+.+++..|++. | ..+|++++|+.+++++
T Consensus 98 ~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-g----~~~i~V~NRt~~ra~~ 165 (283)
T COG0169 98 DGKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-G----AKRITVVNRTRERAEE 165 (283)
T ss_pred CCEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-C----CCEEEEEeCCHHHHHH
Confidence 577666665554444444443221222346899999999999999999999 8 2589999999987765
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.14 Score=50.26 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=33.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (461)
.||.|+|+|..|+.+|..|+.. |. .+++++|.+.-....+
T Consensus 25 ~~VlvvG~GglGs~va~~La~~-Gv----g~i~lvD~D~ve~sNL 64 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAA-GV----GNLTLLDFDTVSLSNL 64 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCcccccCc
Confidence 5899999999999999999999 83 6899998886444333
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.21 Score=50.45 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=43.4
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|-++-.|-.-.-=+.-|+.. + .+....++.|+|+|..+.+++..|+.. |. .+|++++|+.+
T Consensus 97 ~~g~l~G~NTD~~Gf~~~l~~~-~-~~~~~k~vlvlGaGGaarAi~~~l~~~-g~----~~i~i~nRt~~ 159 (288)
T PRK12749 97 DDGYLRGYNTDGTGHIRAIKES-G-FDIKGKTMVLLGAGGASTAIGAQGAIE-GL----KEIKLFNRRDE 159 (288)
T ss_pred cCCEEEEEecCHHHHHHHHHhc-C-CCcCCCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCcc
Confidence 4566665565444444444432 1 122335899999999999999999987 72 58999999964
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.6 Score=44.72 Aligned_cols=234 Identities=17% Similarity=0.211 Sum_probs=133.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+.++.++|+|...--+|..+..+ | +..+-+++|...+-++ +.+-++... +.++.+... -
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h-~----d~~lg~~~r~s~rse~-----l~qala~~~---------ql~l~~q~e-a 62 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAH-G----DARLGLYNRPSTRSER-----LKQALALTP---------QLYLQGQGE-A 62 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhc-c----CceeeccCCCCchhHH-----HHHHHhcCC---------eEEEEeccH-H
Confidence 456899999999999999999988 6 4788899987654443 333333221 123332100 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHH-HhhccCCCCEEEEEeecC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGV 200 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~-~l~~~~~~~iIIs~tkGi 200 (461)
.+.+ +-.+.+ -.+..|++++..+.+-+|+|||.++..+++++|.- .++. -+.+|-++..+
T Consensus 63 -hr~l------eg~~~i---------d~~~kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~---vk~viLiSptf 123 (431)
T COG4408 63 -HRQL------EGSVTI---------DCYIKDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQ---VKSVILISPTF 123 (431)
T ss_pred -HHhh------cCceeh---------hHHHhhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhcc---ccEEEEecccc
Confidence 0000 000000 12346889999999999999999999999999853 2332 23333344334
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcE------------EEEeCcchhHhhhccCceEEEEe---CChhHHHHHHHHhc
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENI------------LYLGGPNIASEIYNKEYANARIC---GAEKWRKPLAKFLR 265 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v------------~vlsGPn~a~ev~~g~~~~~~~~---~~~~~~~~l~~ll~ 265 (461)
+.. ..++..+.+ +|.. ..+ .--.-|+++---+-.+. +..+ ++...++++.++|.
T Consensus 124 Gsn-------~lv~~~mnk-~~~d-aeViS~SsY~~dTk~id~~~p~~alTkavKkr--iYlgs~~~ns~~~e~l~~v~a 192 (431)
T COG4408 124 GSN-------LLVQNLMNK-AGRD-AEVISLSSYYADTKYIDAEQPNRALTKAVKKR--IYLGSQHGNSGSAEMLTAVLA 192 (431)
T ss_pred ccc-------HHHHHHHhh-hCCC-ceEEEeehhcccceeecccCcchHHHHHHhHh--eeeccCCCCChHHHHHHHHHH
Confidence 332 223333333 2311 111 11123555443222111 1222 35677899999999
Q ss_pred CCCceEEecCChHHHHHHH--------HHHHHHHHHHhhcc------------CccchHHH--HHHHHHHHHHHHHHHhC
Q 012547 266 RPHFTVWDNGDLVTHEVMG--------GLKNVYAIGAALTN------------ESATSKSV--YFAHCTSEMVFITHLLA 323 (461)
Q Consensus 266 ~~g~~v~~s~Di~gve~~g--------alKNv~Ai~~Gi~~------------g~~n~~a~--l~~~~~~Em~~l~~a~G 323 (461)
..|+.+...+.+...|-.. .+-|=.++.+=+.. .|+=+.+. -|+..-.|+.++..++|
T Consensus 193 q~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ 272 (431)
T COG4408 193 QHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLG 272 (431)
T ss_pred hcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999998887766532 23333444432211 13333322 24555689999999999
Q ss_pred CC
Q 012547 324 EE 325 (461)
Q Consensus 324 ~~ 325 (461)
.+
T Consensus 273 ve 274 (431)
T COG4408 273 VE 274 (431)
T ss_pred CC
Confidence 84
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.11 Score=47.69 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=29.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
...+|.|||+|.+|...+..|.+. | ++|++++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~-g-----a~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT-G-----AFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcC
Confidence 347899999999999999999988 8 99999953
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.13 Score=49.56 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|+|||+|.+|+.+|..|+.. |. .+++++|.+.
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS-GV----GNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 6899999999999999999999 83 5799999884
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.17 Score=49.28 Aligned_cols=35 Identities=31% Similarity=0.370 Sum_probs=30.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~--~V~l~~r~~ 82 (461)
.+||.|+|+|.+|.++|..|... |. . +|++++|+.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~-G~----~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAA-GA----KPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHc-Cc----CcceEEEEeCCC
Confidence 36999999999999999999988 72 3 799999983
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.17 Score=49.74 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..||+|||+|.+|+.++..|+.. |. .+++++|.+.-
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gv----g~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GV----GTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCEE
Confidence 47899999999999999999999 83 68999988753
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.054 Score=43.40 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=32.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
||+|||+|..|.-+|..|++. | .+|+++.+++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-g-----~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-G-----KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T-----SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-C-----cEEEEEeccchhh
Confidence 699999999999999999998 7 8999999988655
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.084 Score=56.00 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=54.3
Q ss_pred CCceEEEECccHHHHHHHHH--HHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAM--LQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~--La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+++||+|||+|+.+++--.. +.+. -.+ +..++.|+|.++++.+.+. .+.+ +++...
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~-e~l-~~~el~L~Did~~r~~~i~------~~~~------------~~v~~~-- 59 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLART-EEL-PVRELALYDIDEERLKIIA------ILAK------------KLVEEA-- 59 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcC-ccC-CcceEEEEeCCHHHHHHHH------HHHH------------HHHHhh--
Confidence 35799999999988764432 2322 112 2268999999988765321 1111 011110
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhH
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET 173 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~ 173 (461)
|. ...+..++|.++|+++||+|+.++-...+
T Consensus 60 ---------------g~--------~~kv~~ttd~~eAl~gAdfVi~~~rvG~l 90 (442)
T COG1486 60 ---------------GA--------PVKVEATTDRREALEGADFVITQIRVGGL 90 (442)
T ss_pred ---------------CC--------CeEEEEecCHHHHhcCCCEEEEEEeeCCc
Confidence 00 01478899999999999999999865433
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.1 Score=53.89 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=41.1
Q ss_pred hhHHhhHHHHHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 24 SLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.+-+-++.-+.++|. +-..++|.|+|| |.||+.++..|+...| ..++++++|+++.++
T Consensus 137 ll~~~V~la~~~lg~-~l~~k~VLVtGAtG~IGs~lar~L~~~~g----v~~lilv~R~~~rl~ 195 (340)
T PRK14982 137 VICRQVEQNAPRLGI-DLSKATVAVVGATGDIGSAVCRWLDAKTG----VAELLLVARQQERLQ 195 (340)
T ss_pred HHHHHHHHhHHHhcc-CcCCCEEEEEccChHHHHHHHHHHHhhCC----CCEEEEEcCCHHHHH
Confidence 344455555666664 334478999999 8999999999975313 158999999876544
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.093 Score=56.15 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=63.2
Q ss_pred CCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 42 ~~mkI~IIGa----GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
.+.+|+|||+ |.+|..+...|.+. |+ . .+|+.++...+.+ .
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~-gf-~--g~v~~Vnp~~~~i-----------------------------~-- 50 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEG-GY-K--GKIYPVNPKAGEI-----------------------------L-- 50 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhC-CC-C--CcEEEECCCCCcc-----------------------------C--
Confidence 4678999999 88999999999887 72 0 2565554432211 0
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
++.+..++++.-...|+++++||+..+.++++++... . -..++.++
T Consensus 51 -----------------------------G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~-g----v~~~vi~s 96 (447)
T TIGR02717 51 -----------------------------GVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEK-G----VKGAVVIT 96 (447)
T ss_pred -----------------------------CccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhc-C----CCEEEEEC
Confidence 2233344555445679999999999999999998752 2 23566688
Q ss_pred ecCcc
Q 012547 198 KGVEA 202 (461)
Q Consensus 198 kGi~~ 202 (461)
.|+..
T Consensus 97 ~gf~e 101 (447)
T TIGR02717 97 AGFKE 101 (447)
T ss_pred CCccc
Confidence 88864
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.15 Score=52.56 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=31.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..||.|||+|.+|+.+|..|+.. |. .+++++|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gv----g~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GV----GKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCc
Confidence 36899999999999999999999 82 4899999975
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.13 Score=52.91 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=28.2
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+++||+|+|+ |.-|.-+...|+.+ - ..++.+++.++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~H-p----~ve~~~~ss~~ 37 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGH-P----DVELILISSRE 37 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcC-C----CeEEEEeechh
Confidence 4689999997 99999999999977 3 25666665544
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.061 Score=54.27 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=31.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
|||.|.|+ |.+|+.++..|.+. | ++|++.+|+.+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~-g-----~~V~~l~R~~~~ 36 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE-G-----YQVRCLVRNLRK 36 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CeEEEEEcChHH
Confidence 69999996 99999999999998 8 999999998643
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.11 Score=57.63 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=35.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.++|.|+|.|.+|..++..|.+. | +++++++.|+++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~ 438 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN-K-----MRITVLERDISAVNL 438 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC-C-----CCEEEEECCHHHHHH
Confidence 46899999999999999999988 7 899999999987765
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.21 Score=49.61 Aligned_cols=148 Identities=19% Similarity=0.197 Sum_probs=86.1
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+|||+|.|+ |.||..+...+.+. . +.+ +-.++|...... -+..+ .+.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~----~~~L~aa~~~~~~~~~----------g~d~g-----------e~~g~--- 52 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-P----DLELVAAFDRPGSLSL----------GSDAG-----------ELAGL--- 52 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-C----CceEEEEEecCCcccc----------ccchh-----------hhccc---
Confidence 689999999 99999999999876 2 133 334555543110 00000 01110
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+ .-.+.+++|+..+..++|++|=.+-+....+.++....+ +..+|.-|.|+
T Consensus 53 -~----------------------~~gv~v~~~~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~------~~~lVIGTTGf 103 (266)
T COG0289 53 -G----------------------LLGVPVTDDLLLVKADADVLIDFTTPEATLENLEFALEH------GKPLVIGTTGF 103 (266)
T ss_pred -c----------------------ccCceeecchhhcccCCCEEEECCCchhhHHHHHHHHHc------CCCeEEECCCC
Confidence 0 013456677777788999999988777776666655432 34566677799
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEe
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (461)
+.+. . +.+++..- .+.++..|||+.-+.- -.+.++...+.|. ++.+.+
T Consensus 104 ~~e~-----~----~~l~~~a~----~v~vv~a~NfSiGvnl----------l~~l~~~aak~l~--~~DiEI 151 (266)
T COG0289 104 TEEQ-----L----EKLREAAE----KVPVVIAPNFSLGVNL----------LFKLAEQAAKVLD--DYDIEI 151 (266)
T ss_pred CHHH-----H----HHHHHHHh----hCCEEEeccchHHHHH----------HHHHHHHHHHhcC--CCCEEe
Confidence 8762 1 23444321 2346778888542211 0235566777776 555443
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.045 Score=57.12 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|+|||+|.+|.++|..|++. | ++|++++++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g-----~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-G-----YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 4899999999999999999999 8 8999999875
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.11 Score=52.38 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=28.4
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
-.+|+|||.|. +|..+|..|... | ..|+++.++
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~-g-----atVtv~~s~ 191 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQK-N-----ASVTILHSR 191 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 36999999988 999999999987 6 788888654
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.045 Score=51.59 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=33.9
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|||+|||| |..|+.|+.-..+. | |+|+.+.|++.++.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-G-----HeVTAivRn~~K~~ 38 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-G-----HEVTAIVRNASKLA 38 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-C-----CeeEEEEeChHhcc
Confidence 89999997 99999999999999 8 99999999987653
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.26 Score=49.58 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=48.2
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|.++-.|-.-.-=+.-|+... .+...+++.|+|+|..|.+++..|++. |. .+|++++|+.+++++
T Consensus 100 ~~g~l~G~NTD~~Gf~~~L~~~~--~~~~~k~vlilGaGGaarAi~~aL~~~-g~----~~i~i~nR~~~ka~~ 166 (283)
T PRK14027 100 ATGHTTGHNTDVSGFGRGMEEGL--PNAKLDSVVQVGAGGVGNAVAYALVTH-GV----QKLQVADLDTSRAQA 166 (283)
T ss_pred CCCcEEEEcCCHHHHHHHHHhcC--cCcCCCeEEEECCcHHHHHHHHHHHHC-CC----CEEEEEcCCHHHHHH
Confidence 46777766655554444554311 122346899999999999999999988 72 589999999877664
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.17 Score=51.70 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=27.9
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
...++|++|+|+|...-.++..++.. . ++.||.++.-+
T Consensus 47 ~~~~~DvvFlalp~~~s~~~~~~~~~---~---g~~VIDlSadf 84 (313)
T PRK11863 47 LLNAADVAILCLPDDAAREAVALIDN---P---ATRVIDASTAH 84 (313)
T ss_pred hhcCCCEEEECCCHHHHHHHHHHHHh---C---CCEEEECChhh
Confidence 34679999999999987777777643 2 56788777433
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.17 Score=42.87 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
...+|.|||+|.+|..=+..|.+. | .+|++++.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~-g-----A~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA-G-----AKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC-T-----BEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCch
Confidence 446899999999999999999988 7 9999999885
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.18 Score=52.36 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||.|||+|..|+.++..|+.. |. .+++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~-Gv----g~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGA-GV----GHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 6899999999999999999999 83 6899999885
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.18 Score=55.89 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=30.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||.|+|+|..|+..|..|+.. |. .+++++|.+.
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~-GV----g~ItlVD~D~ 372 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGW-GV----RHITFVDNGK 372 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CC----CeEEEEcCCE
Confidence 6899999999999999999998 83 5888988764
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.055 Score=56.38 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=31.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|+|+|||+|.+|.+.|..|++. | ++|.+++++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~-g-----~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA-G-----HEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEeCCCc
Confidence 6899999999999999999998 8 89999999753
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.29 Score=51.29 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|+|||+|..|+.++..||+. |. .+++++|.+.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~-GV----geI~LVD~D~ 210 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKT-PV----REIHLFDGDD 210 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHc-CC----CEEEEECCCE
Confidence 4799999999999999999999 82 5899998774
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.075 Score=55.11 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=33.6
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.-.+++|.|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 40 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRA-G-----WDVDVFERSPT 40 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 33457999999999999999999999 8 89999998764
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.063 Score=55.10 Aligned_cols=34 Identities=26% Similarity=0.512 Sum_probs=31.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|+|.|||+|.-|.++|..|++. | ++|+++.+++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~-g-----~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ-G-----HEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 6899999999999999999999 8 99999998875
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.17 Score=51.39 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=35.0
Q ss_pred cCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 37 GKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 37 ~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|-+...+-||+|||.|..|+--|+...-- | .+|++.+++.++++
T Consensus 162 GvpGV~~~kv~iiGGGvvgtnaAkiA~gl-g-----A~Vtild~n~~rl~ 205 (371)
T COG0686 162 GVPGVLPAKVVVLGGGVVGTNAAKIAIGL-G-----ADVTILDLNIDRLR 205 (371)
T ss_pred CCCCCCCccEEEECCccccchHHHHHhcc-C-----CeeEEEecCHHHHh
Confidence 34455567999999999999888877655 5 89999999976554
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.39 Score=49.76 Aligned_cols=97 Identities=11% Similarity=0.162 Sum_probs=59.5
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+.+||+|||| |..|..+...|+.+ -.|.- .++.+++.... +- . . ..+.
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h-~~f~v-~~l~~~aS~~s-aG--------------k--------~-~~~~----- 52 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKE-TKFNI-AEVTLLSSKRS-AG--------------K--------T-VQFK----- 52 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHC-CCCCc-ccEEEEECccc-CC--------------C--------C-eeeC-----
Confidence 4589999998 99999999999964 32221 23555654421 11 0 0 0011
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEE-ecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKV-VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
. ..+.+ ..|..+ +.+.|++|+|+|+..-+++...+.. . +..||.++.-
T Consensus 53 --~----------------------~~l~v~~~~~~~-~~~~Divf~a~~~~~s~~~~~~~~~---~---G~~VID~Ss~ 101 (347)
T PRK06728 53 --G----------------------REIIIQEAKINS-FEGVDIAFFSAGGEVSRQFVNQAVS---S---GAIVIDNTSE 101 (347)
T ss_pred --C----------------------cceEEEeCCHHH-hcCCCEEEECCChHHHHHHHHHHHH---C---CCEEEECchh
Confidence 0 01222 124433 5789999999999987777766543 3 5778887755
Q ss_pred C
Q 012547 200 V 200 (461)
Q Consensus 200 i 200 (461)
+
T Consensus 102 f 102 (347)
T PRK06728 102 Y 102 (347)
T ss_pred h
Confidence 4
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.45 Score=49.74 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=31.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..+|.|||+|..|+.++..|+.. |. .+++++|.+.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~-Gv----g~i~ivD~D~ 75 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASA-GV----GTITLIDDDT 75 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEeCCE
Confidence 36899999999999999999999 82 6899999885
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.21 Score=55.71 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=36.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
...+|.|+|.|.+|..+|..|.++ | .++++++.++++++.
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~ 438 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLSS-G-----VKMTVLDHDPDHIET 438 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHhC-C-----CCEEEEECCHHHHHH
Confidence 347899999999999999999998 7 899999999988775
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.089 Score=54.44 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=32.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+++|.|||+|..|.++|..|++. | ++|+++.++++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g-----~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-G-----IKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEeeCcc
Confidence 47899999999999999999999 8 99999999864
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.22 Score=47.66 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=29.5
Q ss_pred EEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 46 I~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|+|+|+ |..|..++..|.+. + ++|++..|+..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~-----~~V~~l~R~~~ 33 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-G-----FSVRALVRDPS 33 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-T-----GCEEEEESSSH
T ss_pred CEEECCccHHHHHHHHHHHhC-C-----CCcEEEEeccc
Confidence 789997 99999999999988 7 99999999974
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.45 Score=48.04 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=32.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.||.|||+|.+|+.++..|+.. |. .+++++|.+.=...
T Consensus 28 s~VlIvG~GGLGs~va~~LA~a-GV----G~i~lvD~D~Ve~S 65 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARL-GI----GKFTIADFDVFELR 65 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHh-CC----CeEEEEeCCCcchh
Confidence 6899999999999999999999 83 68999988753333
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.27 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.2
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~ 65 (461)
++||+|+|+|.+|..++..|.++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~ 25 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEEN 25 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHh
Confidence 47999999999999999888654
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.77 Score=47.94 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=31.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..||.|+|+|..|+.++..|+.. |. .+++++|++.
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~-Gv----g~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAA-GV----GTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 36899999999999999999999 82 5899999884
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.43 Score=49.40 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=28.9
Q ss_pred HHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 156 ~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+++.++|+||+|+|+..-.++..++.. . +..||.++.-+
T Consensus 65 ~~~~~~D~vf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~f 103 (344)
T PLN02383 65 DSFDGVDIALFSAGGSISKKFGPIAVD---K---GAVVVDNSSAF 103 (344)
T ss_pred HHHcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCchh
Confidence 346789999999999988877776533 2 56788877444
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.57 Score=45.89 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=31.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
||.|||+|..|+.++..|+.. |. .+++++|.+.=...
T Consensus 1 kVlvvG~GGlG~eilk~La~~-Gv----g~i~ivD~D~Ve~s 37 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-GF----GQIHVIDMDTIDVS 37 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCEEcch
Confidence 689999999999999999999 83 68999998763333
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.098 Score=53.63 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=32.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++++|+|||+|.-|.++|..|++. | ++|+++.++.+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~-g-----~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA-G-----IAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 357899999999999999999998 8 89999998764
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.11 Score=51.81 Aligned_cols=57 Identities=25% Similarity=0.253 Sum_probs=45.4
Q ss_pred hHHhhHHHHHhhcCCC---CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 25 LEERLDELRRLMGKAE---GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 25 ~~~~~~~~~~~~~~~~---~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++|.+...+++|... -...+|+|+|+|.+|+.+|..|++. |. .+++++|.+.-...
T Consensus 9 ~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~-GV----g~itLiD~D~V~~s 68 (268)
T PRK15116 9 WRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALART-GI----GAITLIDMDDVCVT 68 (268)
T ss_pred HHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCEeccc
Confidence 4578888888988532 2347899999999999999999999 83 68999998754333
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.3 Score=50.27 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=33.4
Q ss_pred EEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 149 ~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.+.+|.++.+. +.|+|++|+|+....++..+... . +.. |.|-|-+...
T Consensus 51 ~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~al~---a---Gkh-Vl~EKPla~~ 100 (344)
T PRK10206 51 HFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRALE---A---GKN-VLVEKPFTPT 100 (344)
T ss_pred cccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHH---c---CCc-EEEecCCcCC
Confidence 34577888775 57999999999988777766543 2 333 4468877654
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.33 Score=51.04 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=32.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
..||.|||+|..|+.+|..|+.. |. ..++++|.+.-...
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~-Gv----g~l~lvD~D~ve~s 76 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAA-GI----GRIGIVDFDVVDSS 76 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCEeccc
Confidence 36899999999999999999999 83 68999988753333
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.32 Score=48.73 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=45.9
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-+|-.|-.-.-=+.-|+. .+... ..++.|+|+|..+.+++..|++. | ..+|++++|+.++++.
T Consensus 96 ~~g~l~G~NTD~~Gf~~~L~~-~~~~~--~~~vlilGaGGaarAi~~aL~~~-g----~~~i~i~nR~~~~a~~ 161 (272)
T PRK12550 96 TDGHLKAYNTDYIAIAKLLAS-YQVPP--DLVVALRGSGGMAKAVAAALRDA-G----FTDGTIVARNEKTGKA 161 (272)
T ss_pred eCCEEEEEecCHHHHHHHHHh-cCCCC--CCeEEEECCcHHHHHHHHHHHHC-C----CCEEEEEeCCHHHHHH
Confidence 456565556554444444543 23322 24899999999999999999987 7 1479999999876553
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.1 Score=52.04 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=30.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
.+|+|||+|.-|+++|..|+++ | ++|.++.+++..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-G-----IDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-T-----CEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-c-----cccccchhcccc
Confidence 4799999999999999999999 8 999999998653
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.52 Score=48.81 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=29.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~ 87 (461)
++.||+|||+ .||...+..+... .. +.+ |-+++++.+++++
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~-~~---~~eLvaV~d~~~erA~~ 43 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAA-PE---RFELAGILAQGSERSRA 43 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhC-CC---CcEEEEEEcCCHHHHHH
Confidence 4579999999 6899888888765 20 033 5578888776553
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.5 Score=48.73 Aligned_cols=35 Identities=34% Similarity=0.372 Sum_probs=25.7
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
...++|+||+|+|+....++.+.+.. . +..+|.++
T Consensus 70 ~~~~~DvVf~a~p~~~s~~~~~~~~~---~---G~~VIDls 104 (341)
T TIGR00978 70 ASKDVDIVFSALPSEVAEEVEPKLAE---A---GKPVFSNA 104 (341)
T ss_pred HhccCCEEEEeCCHHHHHHHHHHHHH---C---CCEEEECC
Confidence 45789999999999988887765533 2 45566655
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.55 Score=48.53 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=27.9
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++||+|+| .|.+|..+...|... . ..++..+.++..
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~-p----~~el~~~~~s~~ 39 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH-P----WFEVTALAASER 39 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC-C----CceEEEEEcChh
Confidence 47999998 699999999999866 3 247777755543
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.11 Score=53.77 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=32.2
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
....+|.|||+|..|.++|..|++. | .+|.++++.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~-G-----~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA-G-----LSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEeCCC
Confidence 3446899999999999999999999 8 8999999875
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.49 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.4
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~ 65 (461)
.+||+|+|+|.+|..++..|.+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHh
Confidence 47999999999999999998754
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.53 Score=47.52 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=32.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.||.|+|+|..|+.+|..|+.. |. ..++++|.+.-...
T Consensus 20 s~VLIvG~gGLG~EiaKnLala-GV----g~itI~D~d~ve~s 57 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILA-GV----KSVTLHDTKPCSWS 57 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHc-CC----CeEEEEcCCccchh
Confidence 5899999999999999999999 83 68999998753333
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.6 Score=48.23 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=59.3
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+.+||+|||| |..|..+...|++. . + |..++..+..+.. +- . . ..+.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~-~-h-P~~~l~~laS~~s-aG--------------~--------~-~~~~~---- 51 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAER-Q-F-PVGELYALASEES-AG--------------E--------T-LRFGG---- 51 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcC-C-C-CceEEEEEEccCc-CC--------------c--------e-EEECC----
Confidence 5689999998 99999999999984 2 1 1256666644421 11 0 0 00110
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHH-HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~-av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
..+.+. ++++ ...++|++|+|+|...-.+++.++.. . +..||.++.-
T Consensus 52 -------------------------~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~ 99 (336)
T PRK08040 52 -------------------------KSVTVQ-DAAEFDWSQAQLAFFVAGREASAAYAEEATN---A---GCLVIDSSGL 99 (336)
T ss_pred -------------------------cceEEE-eCchhhccCCCEEEECCCHHHHHHHHHHHHH---C---CCEEEECChH
Confidence 012332 2222 23689999999999877777766643 2 5778887754
Q ss_pred C
Q 012547 200 V 200 (461)
Q Consensus 200 i 200 (461)
+
T Consensus 100 f 100 (336)
T PRK08040 100 F 100 (336)
T ss_pred h
Confidence 4
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.27 Score=49.53 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=25.4
Q ss_pred ceEEEECccHH-HHHHHHHHHHhcCCCCCCeeEEEE
Q 012547 44 LRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIW 78 (461)
Q Consensus 44 mkI~IIGaGam-G~alA~~La~~~G~~~~~~~V~l~ 78 (461)
.+|+|||.|.. |..+|..|... | ..|+++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~-~-----atVt~~ 188 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA-G-----ATVTIC 188 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-C-----CEEEEe
Confidence 68999999888 99999999887 6 788876
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.12 Score=53.57 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=32.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
|++|.|||+|..|.++|..|++. | ++|+++.+.++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~-G-----~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH-G-----YSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEcCCCCC
Confidence 46899999999999999999999 8 999999988653
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.12 Score=53.57 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|+|.|||+|..|.++|..|++. | ++|+++.+.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY-G-----HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC-C-----CceEEEeCCCC
Confidence 6899999999999999999999 8 89999998764
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.39 Score=49.56 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=27.4
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.+.++|++|+|+|+....+++.++. .. +..||+++.
T Consensus 58 ~~~~~D~v~~a~g~~~s~~~a~~~~---~~---G~~VID~ss 93 (339)
T TIGR01296 58 SFEGIDIALFSAGGSVSKEFAPKAA---KC---GAIVIDNTS 93 (339)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHH---HC---CCEEEECCH
Confidence 4588999999999998888777654 33 567776664
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.36 Score=41.49 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=33.5
Q ss_pred EEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 149 ~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
..++|+++.+. +.|+||-|+++..+.+.+.++ +.. +..||++.||.-.
T Consensus 46 ~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~---L~~---G~~VVt~nk~ala 95 (117)
T PF03447_consen 46 AFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA---LER---GKHVVTANKGALA 95 (117)
T ss_dssp CEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH---HHT---TCEEEES-HHHHH
T ss_pred cccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH---HHC---CCeEEEECHHHhh
Confidence 45678888777 899999999988877765554 444 5788999988544
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.72 Score=48.54 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..||.|||+|..|+.+|..|+.. |. .+++++|.+.-
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~-Gv----g~i~lvD~D~v 77 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAA-GV----GTLGIVEFDVV 77 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCEe
Confidence 36899999999999999999999 82 58999988753
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.13 Score=53.79 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=31.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|+|.|||+|.-|.++|..|++. | ++|+++.+.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR-G-----IEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEcCCc
Confidence 6899999999999999999999 8 89999998764
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=92.70 E-value=1.1 Score=45.49 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=36.2
Q ss_pred eEEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 148 LKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 148 i~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
+.+..+++++-.. .|+.+++||...+.+++++.... + -..+|.++.|+...
T Consensus 51 ~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l~e~~~~---g--vk~avI~s~Gf~~~ 103 (291)
T PRK05678 51 LPVFNTVAEAVEATGANASVIYVPPPFAADAILEAIDA---G--IDLIVCITEGIPVL 103 (291)
T ss_pred eeccCCHHHHhhccCCCEEEEEcCHHHHHHHHHHHHHC---C--CCEEEEECCCCCHH
Confidence 3444566665554 79999999999999999997752 1 23456678888643
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.26 Score=55.76 Aligned_cols=52 Identities=27% Similarity=0.263 Sum_probs=38.0
Q ss_pred HHhhHHHHHhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++|.+.=+.++|..+-. ..||+|+|+| +|+..|..|+.. |.+ .+++++|.+.
T Consensus 87 ~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~Lara-Gvv---G~l~lvD~D~ 141 (722)
T PRK07877 87 AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAE-GLC---GELRLADFDT 141 (722)
T ss_pred HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHc-cCC---CeEEEEcCCE
Confidence 46666555565443322 3689999999 999999999998 711 3788888875
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.47 Score=48.42 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 156 ~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
+...++|++|+|+|...-.+++..+.. . +..||.++.
T Consensus 45 ~~~~~~D~vFlalp~~~s~~~~~~~~~---~---g~~VIDlSa 81 (310)
T TIGR01851 45 KLLNAADVAILCLPDDAAREAVSLVDN---P---NTCIIDAST 81 (310)
T ss_pred HhhcCCCEEEECCCHHHHHHHHHHHHh---C---CCEEEECCh
Confidence 445789999999999987777766532 2 567887663
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.21 Score=39.19 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.8
Q ss_pred EECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 48 IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|||+|.-|.+.|..|++. | ++|+++.++..
T Consensus 1 IiGaG~sGl~aA~~L~~~-g-----~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-G-----YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-T-----SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-C-----CcEEEEecCcc
Confidence 899999999999999999 8 89999998863
|
... |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.57 Score=47.85 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=32.6
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (461)
||.|||+|.+|+.++..|+.. |. .+++++|.+.-....++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-Gv----g~ItIvD~D~Ve~sNLn 40 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-GF----GEIHIIDLDTIDLSNLN 40 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-cC----CeEEEEcCCCcchhhcC
Confidence 689999999999999999999 83 68999998764443333
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.16 Score=52.83 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+.....|+|||+|..|.++|..|++. | ++|+++++++.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~-G-----~~v~liE~~~~ 40 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARA-G-----VDVTVLEKHAD 40 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 33446899999999999999999999 8 89999998753
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.19 Score=51.58 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=31.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+++|+|||+|.+|.+.|..|++. | .+|++++++.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-G-----~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-G-----ADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-C-----CEEEEEecCc
Confidence 457899999999999999999999 8 8999998776
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.47 Score=38.66 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=29.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
..++++|+|+|.+|..++..+... | ..+|.+|+|
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~-~----~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADE-G----GKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-C----CCEEEEEcC
Confidence 346899999999999999999987 4 268999998
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.2 Score=50.02 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=29.5
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.|+|||+|..|.++|..|++. | ++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-G-----~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-G-----HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-T-----SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeec
Confidence 489999999999999999999 8 999999998
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.16 Score=52.45 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|.|||+|..|.++|..|++. | .+|+++++++.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~-G-----~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARA-G-----ASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcC-C-----CeEEEEeCCCC
Confidence 5799999999999999999998 8 89999998753
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.17 Score=53.01 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~ 83 (461)
|||+|||+|.-|.++|..|++. | + +|+++.++++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~-g-----~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH-S-----HLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-C-----CCCEEEEecCCc
Confidence 6899999999999999999998 7 5 8999999865
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=92.14 E-value=1.1 Score=42.95 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=30.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..||.|||+|.+|..-+..|.+. | .+|++++.+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~-g-----a~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA-G-----AQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-C-----CEEEEEcCCC
Confidence 35899999999999999999998 8 8999998764
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.91 Score=49.44 Aligned_cols=39 Identities=18% Similarity=0.380 Sum_probs=32.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
..|+.|+|+|.+|...+..+..- | ..|++++++.++.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-G-----A~V~v~d~~~~rle~ 202 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-G-----AIVRAFDTRPEVKEQ 202 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 47999999999999988887776 7 789999999876553
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.18 Score=52.52 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=31.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.+.|+|||+|..|.++|..|++. | ++|+++.+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G-----~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-G-----LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEccC
Confidence 46799999999999999999999 8 999999997
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.22 Score=51.89 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=32.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.++|.|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS-G-----LRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEecCCc
Confidence 46899999999999999999999 8 99999998764
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.62 Score=46.96 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=26.7
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 43 ~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
-++|+|||-|. .|..+|..|... | ..|+++.+
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~-~-----atVtv~hs 191 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLA-G-----CTVTVCHR 191 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC-C-----CeEEEEEC
Confidence 36899999888 999999999877 6 78888743
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.48 Score=47.77 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=29.2
Q ss_pred CCceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.-++|+|||+|. .|.++|..|... | ..|+++.|.
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~-g-----atVtv~~~~ 192 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNA-N-----ATVTICHSR 192 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhC-C-----CEEEEEeCC
Confidence 336899999998 999999999988 7 789988763
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.54 Score=48.21 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=34.0
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
..|+|+|-|| |.+|+.+...|.++ | |.|....|+++.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r-G-----Y~V~gtVR~~~~ 42 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR-G-----YTVRGTVRDPED 42 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC-C-----CEEEEEEcCcch
Confidence 5689999997 99999999999999 8 899999999875
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=91.57 E-value=1.3 Score=44.55 Aligned_cols=107 Identities=12% Similarity=0.144 Sum_probs=50.5
Q ss_pred hhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhccccc
Q 012547 35 LMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYL 114 (461)
Q Consensus 35 ~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l 114 (461)
+-......+.||++||+|.+-.+.-...... |. +..|.-+|++++.++.. ++ +++..
T Consensus 113 l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~-~~---~~~v~~iD~d~~A~~~a--~~---lv~~~-------------- 169 (276)
T PF03059_consen 113 LRIHAGDPPSRVAFIGSGPLPLTSIVLAKQH-GP---GARVHNIDIDPEANELA--RR---LVASD-------------- 169 (276)
T ss_dssp HTT--TT---EEEEE---SS-HHHHHHH--H-TT-----EEEEEESSHHHHHHH--HH---HHH----------------
T ss_pred HhhcCCcccceEEEEcCCCcchHHHHHHHHh-CC---CCeEEEEeCCHHHHHHH--HH---HHhhc--------------
Confidence 3333333567999999999987755444333 30 15688899998765531 11 12210
Q ss_pred chhhhhccCCccchhhhhhhcccccCCCCCCCCeEE-ecCH---HHHhcCCCEEEEcCCch----hHHHHHHHHHHHhhc
Q 012547 115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKV-VTNL---QEAVWDADIVINGLPST----ETKEVFEEISRYWKE 186 (461)
Q Consensus 115 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~dl---~~av~~aDiIIiaVps~----~~~~vl~~i~~~l~~ 186 (461)
.++ .+ .+.+ +.|. ...+.++|+|++|--.. ...++++.+.+++++
T Consensus 170 ~~L----~~-----------------------~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ 222 (276)
T PF03059_consen 170 LGL----SK-----------------------RMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAP 222 (276)
T ss_dssp -HH-----S-----------------------SEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-T
T ss_pred ccc----cC-----------------------CeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCC
Confidence 011 01 1222 2222 22256889999998766 899999999999987
Q ss_pred cCCCCEEE
Q 012547 187 RITVPVII 194 (461)
Q Consensus 187 ~~~~~iII 194 (461)
++.++
T Consensus 223 ---ga~l~ 227 (276)
T PF03059_consen 223 ---GARLV 227 (276)
T ss_dssp ---TSEEE
T ss_pred ---CcEEE
Confidence 56443
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.6 Score=47.26 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=32.6
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATA 90 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~ 90 (461)
||.|||+|..|+.++..|+.. |. .+++++|.+.=....++.
T Consensus 1 kVlVVGaGGlG~eilknLal~-Gv----g~I~IvD~D~Ve~SNLnR 41 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-GF----RNIHVIDMDTIDVSNLNR 41 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCEecccccCc
Confidence 689999999999999999999 83 589999877543443433
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.27 Score=51.27 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=31.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|.|||+|..|.+.|..|++. | ++|+++.+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 5799999999999999999999 8 99999998874
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.5 Score=49.89 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|.|||.|.+|.++|..|.+. | ++|+.++++.+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~-G-----~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK-G-----VYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC-C-----CEEEEEeCCcc
Confidence 5899999999999999999988 8 89999998764
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.25 Score=50.52 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=29.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.|+|||+|.+|+++|..|++. | ++|++++++.
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~-g-----~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARR-G-----LRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccc
Confidence 599999999999999999999 8 8999999875
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.28 Score=50.76 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=33.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
.+++|.|||+|..|.++|..|++. | .+|+++.+.++.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G-----~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-G-----HSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-C-----CcEEEEeCCCcc
Confidence 446899999999999999999999 8 899999988753
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.44 Score=47.54 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=37.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (461)
+++++.|-|| +.+|-.+|..||++ | ++|.+++|++++++++.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~-g-----~~liLvaR~~~kL~~la 47 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARR-G-----YNLILVARREDKLEALA 47 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCcHHHHHHHH
Confidence 4467999997 99999999999999 8 99999999999887644
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.28 Score=50.33 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=29.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.|+|||+|.+|.+.|..|++. | .+|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~-g-----~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKH-G-----KKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccC
Confidence 589999999999999999999 8 8999998853
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=90.97 E-value=1.3 Score=43.84 Aligned_cols=48 Identities=25% Similarity=0.276 Sum_probs=36.5
Q ss_pred ecCHHHHhc--CCCEEEEcC--CchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 151 VTNLQEAVW--DADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 151 t~dl~~av~--~aDiIIiaV--ps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
..|+.++++ ++|++|=.. |--+.+++++.+..+.+ +.+|..++|-.+.
T Consensus 95 ~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~----~PIIFaLSNPt~~ 146 (254)
T cd00762 95 SGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINE----RPVIFALSNPTSK 146 (254)
T ss_pred cCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCC----CCEEEECCCcCCc
Confidence 368999999 899877543 44689999999998765 4678888877653
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.8 Score=45.72 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=28.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
+..|.|+|.|.+|..++..|.+. | .+|.+++.+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~-g-----~~vvVId~d 272 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQR-G-----QAVTVIVPL 272 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHC-C-----CCEEEEECc
Confidence 34699999999999999999887 7 788888865
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.29 Score=51.31 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++|.|||+|.-|++.|..|++. | ++|.++++...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G-----~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-G-----IQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 5899999999999999999999 8 89999998753
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.9 Score=38.87 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=24.9
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEE
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~ 196 (461)
|+++++++||+|+.++....+ ++ ..++++ +++++.+
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~---i~--~~~ikp---Ga~Vidv 99 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEK---VP--TEWIKP---GATVINC 99 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCc---cC--HHHcCC---CCEEEEc
Confidence 456778999999999987633 21 245676 6777743
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.37 Score=51.62 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=33.1
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+..++.|.|||+|.-|++.|..|++. | .+|.++++...
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~-G-----~~VlllEr~~~ 73 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKG-G-----IETFLIERKLD 73 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 34457899999999999999999999 8 89999998753
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.76 E-value=1.5 Score=45.26 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|+|+|+|..|+ +|..+|++.| .+|+.++|++++.+.
T Consensus 168 ~~V~I~G~GGlGh-~avQ~Aka~g-----a~Via~~~~~~K~e~ 205 (339)
T COG1064 168 KWVAVVGAGGLGH-MAVQYAKAMG-----AEVIAITRSEEKLEL 205 (339)
T ss_pred CEEEEECCcHHHH-HHHHHHHHcC-----CeEEEEeCChHHHHH
Confidence 6899999998885 5666666437 899999999987653
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.31 Score=52.34 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.++|+|||||.-|.+.|..|.+. | ++|+++.++.+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~-G-----~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE-G-----HTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc-C-----CeEEEEecCCC
Confidence 47899999999999999999999 8 89999998764
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.32 Score=50.47 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|.|||+|..|.++|..|++. | ++|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQ-G-----RSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEcCCC
Confidence 4799999999999999999999 8 9999999764
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.61 E-value=1.1 Score=46.76 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=27.9
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCC--CEEEEEeecC
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGV 200 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~--~iIIs~tkGi 200 (461)
.+.++|++|+|+|+..-+++..++.. . + .+||..+.-+
T Consensus 62 ~~~~~Divf~a~~~~~s~~~~~~~~~---a---G~~~~VID~Ss~f 101 (369)
T PRK06598 62 ALKKLDIIITCQGGDYTNEVYPKLRA---A---GWQGYWIDAASTL 101 (369)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHh---C---CCCeEEEECChHH
Confidence 35789999999999988887777643 2 4 4577776544
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.29 Score=50.60 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=29.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.+|.|||+|..|.++|..|++. | ++|+++++.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G-----~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-G-----IKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-C-----CeEEEecCC
Confidence 5799999999999999999999 8 899999976
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.29 Score=51.02 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=31.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.||+|||+|.-|.++|..|++. | ++|+++.+.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G-----~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-G-----WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 5899999999999999999999 8 89999998764
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.32 Score=50.75 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..|.|||+|..|.++|..|++. | ++|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~-G-----~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGS-G-----LRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhC-C-----CEEEEEeCCCC
Confidence 4799999999999999999999 8 99999998764
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.5 Score=45.24 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=58.1
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
.+...-|++|+|+|.|+.-++..|... -+++|+|+ +.+|+.+.+.+.. +++ .+|
T Consensus 2 ~~s~~ir~Gi~g~g~ia~~f~~al~~~---p~s~~~Ivava~~s~~~A~~fA---------q~~-----------~~~-- 56 (351)
T KOG2741|consen 2 SDSATIRWGIVGAGRIARDFVRALHTL---PESNHQIVAVADPSLERAKEFA---------QRH-----------NIP-- 56 (351)
T ss_pred CCCceeEEEEeehhHHHHHHHHHhccC---cccCcEEEEEecccHHHHHHHH---------Hhc-----------CCC--
Confidence 455667999999999999999888643 11237766 4556554443211 111 011
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCC--CEEEEcCCchhHHHHHHHHHH
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA--DIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~a--DiIIiaVps~~~~~vl~~i~~ 182 (461)
+.++..+.++.+++. |+|.+++|..+..+++-.+..
T Consensus 57 -----------------------------~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~ 94 (351)
T KOG2741|consen 57 -----------------------------NPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVMLALN 94 (351)
T ss_pred -----------------------------CCccccCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHH
Confidence 234556778877766 999999998777777765543
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.81 Score=50.09 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=46.2
Q ss_pred CcccccccchhHHhhHHHHHhhcC--------CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 15 NGLIHHTNGSLEERLDELRRLMGK--------AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+|-++-.|-.-.--+.-|++.++. .+...+++.|+|+|.+|.+++..|++. | .+|++++|+.++++
T Consensus 343 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~-G-----~~V~i~nR~~e~a~ 416 (529)
T PLN02520 343 DGKLVGYNTDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEK-G-----ARVVIANRTYERAK 416 (529)
T ss_pred CCEEEEEcccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 566666665555444444432210 112235799999999999999999998 8 78999999876655
Q ss_pred h
Q 012547 87 R 87 (461)
Q Consensus 87 ~ 87 (461)
.
T Consensus 417 ~ 417 (529)
T PLN02520 417 E 417 (529)
T ss_pred H
Confidence 3
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.32 Score=49.78 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=30.1
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|.|||+|.-|+++|..|++. | ++|+++.+++.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~-G-----~~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARS-G-----LKIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcC-C-----CEEEEEeCCCc
Confidence 89999999999999999999 8 99999999874
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.36 Score=51.45 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=30.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+++|.|||+|..|+..|..|++. | .+|++++..+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~-G-----l~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR-G-----VPVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEccC
Confidence 46899999999999999999999 8 8999998654
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.33 Score=50.19 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=31.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..+|.|||+|..|+++|..|++. | ++|+++++.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~-G-----~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQH-G-----FSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence 46899999999999999999999 8 8999999865
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=90.34 E-value=1.5 Score=43.27 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=30.9
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
+|.|+|+ |.+|+.++..|.+. | ++|++..|+++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g-----~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-S-----VPFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-C-----CcEEEEeCCCcc
Confidence 5899998 99999999999998 8 999999999764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.39 Score=52.42 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=33.5
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
......+|.|||+|..|.++|..|++. | ++|+++++.++
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viE~~~~ 57 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQ-G-----VPVVLLDDDDT 57 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEeCCCC
Confidence 333446899999999999999999999 8 89999998864
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.39 Score=49.92 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=31.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..+|.|||+|..|.++|..|++. | ++|+++.+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G-----~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-G-----IDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-C-----CCEEEEEcCCc
Confidence 35799999999999999999999 8 99999998864
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.99 Score=53.07 Aligned_cols=58 Identities=22% Similarity=0.175 Sum_probs=43.5
Q ss_pred hHHhhHHHHHhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCC-CCeeEEEEecCch
Q 012547 25 LEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLR-DKVLIRIWRRPGR 83 (461)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~---~mkI~IIGaGamG~alA~~La~~~G~~~-~~~~V~l~~r~~~ 83 (461)
..+|.|...+++|...-. ..||.|||+|..|+.++..|+.. |.-+ ++..++++|.+.=
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~-Gv~~~~~G~i~IvD~D~V 459 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALM-GVGTGKKGMITVTDPDLI 459 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHh-CCCcCCCCeEEEECCCEe
Confidence 468888888888754322 37899999999999999999998 8200 0137888887753
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.03 E-value=5.5 Score=42.84 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=27.8
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCC--eeEEEEec
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--VLIRIWRR 80 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~--~~V~l~~r 80 (461)
.+.+|+|-|| |.+|.++...+|.. ..|-++ ..+.|++.
T Consensus 122 ~p~~V~vtgAag~i~Y~l~~~ia~G-~~fG~~~~v~L~LlDi 162 (452)
T cd05295 122 NPLQVCITNASAPLCYHLIPSLASG-EVFGMEEEISIHLLDS 162 (452)
T ss_pred CceEEEEecCcHHHHHHHHHHHhCC-cccCCCCeEEEEEEcC
Confidence 3579999997 99999999999975 333222 34667777
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.4 Score=49.39 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..+|+|||+|.-|.++|..|++. | .+|++++++..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQS-G-----LRVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence 35799999999999999999999 8 89999998865
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.99 E-value=1.3 Score=45.54 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.8
Q ss_pred ceEEEECccHHHHHHHHHHHH
Q 012547 44 LRIVGVGAGAWGSVFTAMLQD 64 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~ 64 (461)
|||+|+|.|++|..++..|.+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~ 21 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKS 21 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 699999999999999999976
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.39 Score=47.79 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=31.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
|+|.|.|+ |.+|..++..|++. | ++|++++|+.+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 36 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ-G-----EEVRVLVRPTSD 36 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC-C-----CEEEEEEecCcc
Confidence 68999996 99999999999998 8 899999998653
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.52 Score=52.64 Aligned_cols=52 Identities=25% Similarity=0.398 Sum_probs=38.5
Q ss_pred hhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.+..|.+.+..+.+-.......|.|||+|..|.++|..|++. | .+|.++.++
T Consensus 52 ~~~~r~~~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~r-G-----l~V~LvE~~ 103 (627)
T PLN02464 52 SVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAATR-G-----LRVGLVERE 103 (627)
T ss_pred CCcChHHHHHHhhccccCCccCEEEECCCHHHHHHHHHHHhC-C-----CEEEEEecc
Confidence 334455555554322223446899999999999999999999 8 899999886
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=89.75 E-value=1.3 Score=40.92 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=24.8
Q ss_pred CCCceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 41 GDPLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 41 ~~~mkI~IIGaG-amG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
..-++|+|||-+ ..|..++..|.++ | ..|++...
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~-~-----atVt~~h~ 68 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNK-G-----ATVTICHS 68 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHT-T------EEEEE-T
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhC-C-----CeEEeccC
Confidence 344789999986 5999999999988 6 78888643
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.41 Score=49.01 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=29.5
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.|+|||+|.+|.+.|..|++. | ++|+++++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-G-----~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-G-----LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 489999999999999999999 8 8999999874
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=89.67 E-value=3.6 Score=41.55 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=62.2
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+..||+|.|. |..|.++-..+... | .+ .+|.-++..- + ..+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~-g-----~~-~v~~V~p~~~---------------------------~-~~v--- 46 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAY-G-----TN-IVGGVTPGKG---------------------------G-TTV--- 46 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhC-C-----CC-EEEEECCCCC---------------------------c-cee---
Confidence 4568999995 99999998888766 6 56 5555554210 0 000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.++.+..+.+++-+. .|+.+++||+..+.+++++.... + -..+|.++.
T Consensus 47 -------------------------~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~~~~---G--vk~avIis~ 96 (286)
T TIGR01019 47 -------------------------LGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFEAIDA---G--IELIVCITE 96 (286)
T ss_pred -------------------------cCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHHHC---C--CCEEEEECC
Confidence 133444556665444 69999999999999999997752 1 134566888
Q ss_pred cCcc
Q 012547 199 GVEA 202 (461)
Q Consensus 199 Gi~~ 202 (461)
|+..
T Consensus 97 Gf~e 100 (286)
T TIGR01019 97 GIPV 100 (286)
T ss_pred CCCH
Confidence 8754
|
ATP citrate lyases appear to form an outgroup. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.37 Score=54.04 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++|+|||+|.+|.++|..|++. | .+|++++++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~-G-----~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR-G-----WQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 5899999999999999999999 8 8999999874
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=89.56 E-value=0.55 Score=45.52 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=32.8
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
++|+|.|+|+ |.+|..++..|..+ | ++|++..|+.+.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~ 53 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAK-G-----FAVKAGVRDVDK 53 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEecCHHH
Confidence 4589999996 99999999999998 8 899999998754
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.55 E-value=0.49 Score=51.41 Aligned_cols=34 Identities=12% Similarity=0.269 Sum_probs=30.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
....|.|||+|..|.++|..+++. | .+|.++.++
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~r-G-----l~V~LvEk~ 38 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGR-G-----LSVLLCEQD 38 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecC
Confidence 446799999999999999999999 8 899999986
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.46 Score=51.73 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=32.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..+|.|||+|..|.++|..|++. | ++|+++.+...
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~-G-----~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRR-G-----VDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 36899999999999999999999 8 99999998764
|
|
| >PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO | Back alignment and domain information |
|---|
Probab=89.52 E-value=1.1 Score=41.33 Aligned_cols=97 Identities=24% Similarity=0.329 Sum_probs=49.7
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 108 (461)
.++++.++........+|++.|||+=|.++...+--. . ..-..++|.++.+ .+
T Consensus 54 ~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~-~----~~I~~vvD~np~K--------------~G-------- 106 (160)
T PF08484_consen 54 KAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLD-N----DLIDYVVDDNPLK--------------QG-------- 106 (160)
T ss_dssp HHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT---T----TTS--EEES-GGG--------------TT--------
T ss_pred HHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCC-c----ceeEEEEeCChhh--------------cC--------
Confidence 3444444443444446899999999999998886543 1 1234567777632 11
Q ss_pred hcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh-cCCCEEEEcCCchhHHHHHHHHHHHhhc
Q 012547 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKE 186 (461)
Q Consensus 109 ~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av-~~aDiIIiaVps~~~~~vl~~i~~~l~~ 186 (461)
.|+|+.. + +|.. +++.. ...|+||+ .+..+.+++.+++..+...
T Consensus 107 ---~~~PGt~-------i--------------------pI~~---p~~l~~~~pd~viv-law~y~~EI~~~~~~~~~~ 151 (160)
T PF08484_consen 107 ---KYLPGTH-------I--------------------PIVS---PEELKERKPDYVIV-LAWNYKDEIIEKLREYLER 151 (160)
T ss_dssp ---EE-TTT-----------------------------EEEE---GGG--SS--SEEEE-S-GGGHHHHHHHTHHHHHT
T ss_pred ---cccCCCC-------C--------------------eECC---HHHHhhCCCCEEEE-cChhhHHHHHHHHHHHHhc
Confidence 3666421 1 2322 22322 34798877 6788899999999988776
|
; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A. |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.55 Score=50.93 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=32.4
Q ss_pred CCCCceEEEECccHHHHHHHHHHHH--hcCCCCCCeeEEEEecCch
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQD--SYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~--~~G~~~~~~~V~l~~r~~~ 83 (461)
....+||+|||+|.-|.+.|..|++ . | ++|++|++.+.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~-g-----~~Vtv~E~~p~ 62 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHD-G-----ARVDIIERLPT 62 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCC-C-----CeEEEEecCCC
Confidence 3345789999999999999999987 5 6 99999998863
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=89.42 E-value=0.54 Score=51.22 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..+|.|||+|..|+++|..|++. | ++|.++.|+..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~-G-----~~V~vlEr~~~ 77 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKD-G-----RRVHVIERDLR 77 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHc-C-----CeEEEEECcCC
Confidence 35899999999999999999999 8 99999998753
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.38 E-value=0.44 Score=49.21 Aligned_cols=34 Identities=35% Similarity=0.432 Sum_probs=31.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|.|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGS-G-----LKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCCc
Confidence 4699999999999999999999 8 99999998764
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.53 Score=46.45 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=30.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCC----CC--CCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGY----LR--DKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~----~~--~~~~V~l~~r~~ 82 (461)
++.||.|||+|..|+.++..||+. |. +- .+.+++++|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~-G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARL-HHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHc-cccccccCCCCCCEEEEECCCE
Confidence 567999999999999999999986 51 00 012788888775
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.29 E-value=1.4 Score=49.63 Aligned_cols=60 Identities=15% Similarity=0.055 Sum_probs=41.6
Q ss_pred hHHhhHHHHHhhcCCC---CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhh
Q 012547 25 LEERLDELRRLMGKAE---GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (461)
Q Consensus 25 ~~~~~~~~~~~~~~~~---~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (461)
-+||.+.=.+++|... -+..||+|+|+|.+|+.++..|+.. |. .+++++|.+.-....+|
T Consensus 22 ~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~-GV----G~l~LvD~D~ve~sNLN 84 (679)
T PRK14851 22 REAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRT-GI----GRFHIADFDQFEPVNVN 84 (679)
T ss_pred HHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHh-CC----CeEEEEcCCEecccccc
Confidence 3456665555554322 1237899999999999999999999 83 57888887753333333
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=89.29 E-value=1.8 Score=51.03 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=32.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.+|.|+|+|..|+-+|..|+.+ |. ..++++|.+.-...
T Consensus 25 s~VLIiG~gGLG~EiaKnL~la-GV----g~iti~D~d~v~~s 62 (1008)
T TIGR01408 25 SNVLISGMGGLGLEIAKNLVLA-GV----KSVTLHDTEKCQAW 62 (1008)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCeecHh
Confidence 6899999999999999999999 83 68999997753333
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.5 Score=51.78 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=28.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
+||+|||||.-|.+.+..|.+. | .+|+++.++.+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-g-----~~~~~fE~~~~i 36 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-G-----LEVTCFEKSDDI 36 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-T------EEEEEESSSSS
T ss_pred CEEEEECccHHHHHHHHHHHHC-C-----CCCeEEecCCCC
Confidence 5899999999999999999998 8 899999988753
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.43 Score=49.72 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=29.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.|+|||+|..|.++|..|++. | ++|+++.+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGS-G-----LEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence 699999999999999999998 8 8999999875
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=89.15 E-value=0.62 Score=47.81 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=32.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..++|+|||+|..|...|..|++. | ++|+++++.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL-G-----YEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 457999999999999999999998 8 89999998754
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.12 E-value=2.2 Score=44.05 Aligned_cols=42 Identities=29% Similarity=0.268 Sum_probs=29.1
Q ss_pred CHHHHh--cCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 153 NLQEAV--WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 153 dl~~av--~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
++.+.+ .++|+||-++++....++..++ +.. +..||+..||.
T Consensus 82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~---G~~VVtanK~~ 125 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKE---GKSVVTSNKPP 125 (336)
T ss_pred CHHHHHhcCCCCEEEECCCcHHHHHHHHHH---Hhh---CCcEEECCHHH
Confidence 555655 4789999999877655555443 444 56788888874
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.55 Score=50.83 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=31.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.....|.|||+|..|.++|..|++. | .+|.++.+..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~r-G-----~~V~LlEk~d 39 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGR-G-----LKVLLCEKDD 39 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence 3446799999999999999999999 8 8999999873
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=88.89 E-value=0.53 Score=55.07 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=33.7
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 38 ~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+.....+||+|||+|.-|.+.|..|++. | |+|+++++..
T Consensus 301 ~~~~~gkkVaVIGsGPAGLsaA~~Lar~-G-----~~VtVfE~~~ 339 (944)
T PRK12779 301 WAAAVKPPIAVVGSGPSGLINAYLLAVE-G-----FPVTVFEAFH 339 (944)
T ss_pred cccCCCCeEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeeCC
Confidence 3334568999999999999999999999 8 9999998864
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.89 E-value=0.44 Score=51.05 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=32.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
.++++|||||+-|.+.|+.|.+. | ++|++..|+.+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g-----~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-G-----HEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-C-----CCceEEEecCCc
Confidence 47899999999999999999998 8 999998887653
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.81 E-value=3.9 Score=41.51 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=29.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+.+|+.||+|..|..-...++.. . ++..++-++.+++.++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~-~---p~~~~~giD~d~~ai~~ 164 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHH-L---PTTSFHNFDIDPSANDV 164 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhc-C---CCCEEEEEeCCHHHHHH
Confidence 667999999999887655554433 1 12578899999876653
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.2 Score=46.25 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=44.2
Q ss_pred chhHHhhHHHHHhhcCC-------------------------CCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEE
Q 012547 23 GSLEERLDELRRLMGKA-------------------------EGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR 76 (461)
Q Consensus 23 ~~~~~~~~~~~~~~~~~-------------------------~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~ 76 (461)
-++|..++|||+....- ....++|.|.|+ |.+|++++..|++. | ++|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~VLVTGatGfIG~~lv~~L~~~-G-----~~V~ 81 (367)
T PLN02686 8 ESMEAEVEEFRAALLLSRGGDDDGWRGSRGGGKEANAGDAGADAEARLVCVTGGVSFLGLAIVDRLLRH-G-----YSVR 81 (367)
T ss_pred HhHHHHHHHHHHHHHhcccCCccccccccCccccccccccccCCCCCEEEEECCchHHHHHHHHHHHHC-C-----CEEE
Confidence 47888899999843211 223478999997 99999999999999 8 8999
Q ss_pred EEecCchhh
Q 012547 77 IWRRPGRSV 85 (461)
Q Consensus 77 l~~r~~~~~ 85 (461)
++.|+.+..
T Consensus 82 ~~~r~~~~~ 90 (367)
T PLN02686 82 IAVDTQEDK 90 (367)
T ss_pred EEeCCHHHH
Confidence 888876543
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.49 Score=49.40 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=29.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
..|.|||+|..|.++|..|++. | ++|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~-G-----~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKES-D-----LRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CEEEEEcCC
Confidence 4799999999999999999998 8 999999985
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.54 Score=52.84 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=32.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+.+|.|||+|..|.++|..|++. | ++|+++.|+.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~-G-----i~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKK-G-----FDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeccc
Confidence 347899999999999999999999 8 9999999875
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.62 E-value=0.51 Score=50.85 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=31.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|||+|+|+|--|.+-|..|++. | ++|++|.++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-g-----~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-G-----YDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-C-----CceEEEeccC
Confidence 7999999999999999999999 8 9999998765
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=88.61 E-value=2.4 Score=46.26 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=33.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
...||.|+|+|.+|...+..+... | .+|+++++++++.+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-G-----A~V~a~D~~~~rle~ 203 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-G-----AIVRAFDTRPEVAEQ 203 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 357999999999998877776666 8 789999999877664
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.54 E-value=1.1 Score=50.28 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+||+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~-G-----~~V~V~E~~~ 360 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARN-G-----VAVTVYDRHP 360 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 47999999999999999999999 8 8999999865
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=88.52 E-value=0.6 Score=50.09 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..++|+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-G-----~~V~vie~~~~ 177 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-G-----HKVTVFERADR 177 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 347999999999999999999998 8 89999998653
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.48 E-value=0.66 Score=52.03 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=32.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..+||+|||+|..|.+.|..|++. | ++|+++++++.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-G-----~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-G-----HDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 347999999999999999999998 8 99999998753
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.47 E-value=1.6 Score=44.10 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=25.7
Q ss_pred ceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012547 44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWR 79 (461)
Q Consensus 44 mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~ 79 (461)
++++|||-|. .|..+|..|... | ..|+++.
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~-~-----atVtv~h 195 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNR-N-----ATVSVCH 195 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHC-C-----CEEEEEe
Confidence 6899999888 999999999877 6 7888774
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=88.39 E-value=2.5 Score=42.48 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=36.5
Q ss_pred cCHHHHhc--CCCEEEEcC--CchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 152 TNLQEAVW--DADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 152 ~dl~~av~--~aDiIIiaV--ps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.++.++++ ++|++|=+. |--+.+++++.+..+.+ +.+|..++|-...
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~----~PIIFaLSNPt~~ 145 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNE----RPIIFALSNPTSK 145 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCC----CCEEEECCCcCCc
Confidence 67999999 889877655 44688999999988765 4688888887653
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=88.36 E-value=0.9 Score=48.81 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=31.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
...||+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G-----~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-G-----VQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-C-----CeEEEEecCC
Confidence 346899999999999999999998 8 8999998775
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=0.67 Score=49.45 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=32.6
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
...++|+|||+|..|.+.|..|++. | ++|+++++...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~-g-----~~V~lie~~~~ 174 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK-G-----YDVTIFEARDK 174 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEccCCC
Confidence 3457999999999999999999998 8 99999988753
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.29 E-value=0.61 Score=48.77 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=31.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++-|+|||||.-|++.|..|+++ | .+|.++.+..+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-G-----~~VlvlEk~~~ 37 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-G-----LDVLVLEKGSE 37 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-C-----CeEEEEecCCC
Confidence 46799999999999999999999 8 89999998764
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.16 E-value=1.4 Score=44.50 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=26.4
Q ss_pred CceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeEEEE
Q 012547 43 PLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIW 78 (461)
Q Consensus 43 ~mkI~IIGaG-amG~alA~~La~~~G~~~~~~~V~l~ 78 (461)
-++|+|||.| .+|..+|..|.+. | ..|+++
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~-g-----AtVtv~ 187 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNA-G-----ASVSVC 187 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC-C-----CEEEEE
Confidence 3689999998 9999999999988 6 788877
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=1.1 Score=43.16 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=36.6
Q ss_pred HHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 33 RRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 33 ~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|.++++.+ .++|.|.|+ |.+|..++..|+++ | ++|.+.+|+++..+
T Consensus 3 ~~~~~~~~--~~~vlItGa~g~iG~~~a~~L~~~-g-----~~V~~~~r~~~~~~ 49 (264)
T PRK12829 3 IDLLKPLD--GLRVLVTGGASGIGRAIAEAFAEA-G-----ARVHVCDVSEAALA 49 (264)
T ss_pred hhHhhccC--CCEEEEeCCCCcHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 34555533 368999997 99999999999998 8 89999999876443
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=0.81 Score=43.63 Aligned_cols=37 Identities=8% Similarity=0.239 Sum_probs=32.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
||+.|.|+ |.+|.+++..|++. | ++|.+.+|+.+.++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~-g-----~~v~~~~r~~~~~~ 38 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRND-G-----HKVTLVGARRDDLE 38 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 58999997 89999999999998 8 89999999876554
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.02 E-value=1.2 Score=49.79 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=31.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+||+|||+|..|.+.|..|++. | ++|+++.+.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-G-----~~Vtv~e~~~~ 344 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-G-----VQVDVFDRHPE 344 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-C-----CcEEEEeCCCC
Confidence 47999999999999999999998 8 89999998763
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=87.94 E-value=8.6 Score=38.49 Aligned_cols=68 Identities=24% Similarity=0.396 Sum_probs=36.9
Q ss_pred cCcccccccchhHHhh-HHHHHhhcCCCCCC-ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhh
Q 012547 14 SNGLIHHTNGSLEERL-DELRRLMGKAEGDP-LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (461)
|-|+......+||+-- ..+..+..+...++ ++|.-||+| ||+. +..+++.+| .+|+.++-++++++.+
T Consensus 32 S~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcG-wG~~-~~~~a~~~g-----~~v~gitlS~~Q~~~a 101 (273)
T PF02353_consen 32 SCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCG-WGGL-AIYAAERYG-----CHVTGITLSEEQAEYA 101 (273)
T ss_dssp S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-T-TSHH-HHHHHHHH-------EEEEEES-HHHHHHH
T ss_pred CCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHH-HHHHHHHcC-----cEEEEEECCHHHHHHH
Confidence 3456666677787642 33555555555444 799999999 7744 455555536 7899999998877654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=87.87 E-value=0.69 Score=45.08 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=30.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.|.|||+|..|.++|..|++. | .+|.++.++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~-g-----~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADK-G-----LRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence 489999999999999999998 8 89999998864
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=87.68 E-value=0.62 Score=49.72 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=30.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+|+|||+|..|+..|..|++. | .+|+++.+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~-G-----~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA-G-----VPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecccc
Confidence 699999999999999999999 8 89999987654
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=87.65 E-value=0.77 Score=50.35 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..|.|||+|..|.++|..|++. | .+|.++.++.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~r-G-----~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALR-G-----LRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHc-C-----CeEEEEECCC
Confidence 5799999999999999999999 8 8999999853
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.69 Score=49.74 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..|.|||+|..|.++|..|++. | ++|+++++.++
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA-G-----VKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 4699999999999999999999 8 99999998765
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.51 E-value=3.4 Score=42.63 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=29.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+++|+|+|.+|...+..+... | ..+|.+.++++++++.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~-G----a~~Viv~d~~~~Rl~~ 208 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL-G----ASVVIVVDRSPERLEL 208 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc-C----CceEEEeCCCHHHHHH
Confidence 899999999998875555555 6 2688889999887664
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=1 Score=48.92 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=33.4
Q ss_pred HhhcCCCCCCceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEEEEecCch
Q 012547 34 RLMGKAEGDPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 34 ~~~~~~~~~~mkI~IIGaGamG~alA~~La-~~~G~~~~~~~V~l~~r~~~ 83 (461)
|-+.... .+.||+|||+|.-|.+.|..|+ +. | ++|++|.+.+.
T Consensus 31 ~~~~~~~-~~krVAIVGaGPAGlyaA~~Ll~~~-g-----~~VtlfEk~p~ 74 (506)
T PTZ00188 31 CFFTNEA-KPFKVGIIGAGPSALYCCKHLLKHE-R-----VKVDIFEKLPN 74 (506)
T ss_pred ccCCCCC-CCCEEEEECCcHHHHHHHHHHHHhc-C-----CeEEEEecCCC
Confidence 4444433 5679999999999999999765 55 6 89999998753
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.37 E-value=0.92 Score=48.72 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=31.9
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
...++|+|||+|..|.+.|..|++. | ++|+++++..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-G-----~~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-G-----YDVTIFEALH 173 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence 3458999999999999999999999 8 9999998654
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.36 E-value=1 Score=43.29 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=32.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|+|.|+|+ |..|.+++..|++. | ++|.+.+|+++.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 38 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ-G-----HKVIATGRRQERLQ 38 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 68999996 99999999999998 8 89999999876544
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.31 E-value=2.7 Score=43.30 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=27.9
Q ss_pred hcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 158 v~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+++|++|.|.+...-+++..++.. . +.++|+.+.-+
T Consensus 64 ~~~~Divf~~ag~~~s~~~~p~~~~---~---G~~VIdnsSa~ 100 (334)
T COG0136 64 FSDVDIVFFAAGGSVSKEVEPKAAE---A---GCVVIDNSSAF 100 (334)
T ss_pred cccCCEEEEeCchHHHHHHHHHHHH---c---CCEEEeCCccc
Confidence 4589999999998888887777664 2 67788766444
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=87.29 E-value=0.81 Score=49.87 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=32.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
...+|.|||+|..|.++|..|++. | .+|.++.+..+
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~-G-----~~v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQY-G-----VRVLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 346899999999999999999999 8 89999998864
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.27 E-value=1.3 Score=42.70 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=33.0
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++..+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~-G-----~~V~~~~r~~~~~~ 48 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQA-G-----AEVILNGRDPAKLA 48 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 368999997 99999999999999 8 89999999876543
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=87.20 E-value=0.85 Score=47.43 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=29.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhc-CCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSY-GYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~-G~~~~~~~V~l~~r~~ 82 (461)
..|+|||+|.+|.++|..|++.. | ++|+++++..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g-----~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPG-----ARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCC-----CeEEEEeCCC
Confidence 47999999999999999999752 3 8999999875
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=87.15 E-value=0.78 Score=44.99 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=29.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+|+|||+|.-|.+.|..|++. | ++|++++++.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARA-N-----LKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeccC
Confidence 699999999999999999998 8 8999999754
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=87.01 E-value=0.85 Score=50.39 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|.|||+|..|.++|..|++. | ++|.++.|+.
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~-G-----~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQ-G-----RKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcccc
Confidence 36899999999999999999999 8 9999999975
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=87.00 E-value=3.5 Score=44.11 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=29.8
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCC-CCeeEEEEecCch
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLR-DKVLIRIWRRPGR 83 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~-~~~~V~l~~r~~~ 83 (461)
||.|||+|+.|+.++..|+.. |.-. ++..++++|.+.=
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDNI 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCCc
Confidence 689999999999999999998 8200 1148889987753
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.99 E-value=2.9 Score=40.42 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=29.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..++|+|.|.|++|..+|..|.+. | ...|.+.+.+.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-G----~~vV~vsD~~g 57 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-G----GKVLAVSDPDG 57 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-C----CEEEEEEcCCC
Confidence 447999999999999999999998 7 13666777766
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.93 E-value=1.1 Score=43.45 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=32.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|+|.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~-G-----~~V~~~~r~~~~~~ 38 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK-G-----ARVVISSRNEENLE 38 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 68999997 88999999999999 8 89999999876554
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=86.91 E-value=0.9 Score=44.41 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=31.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|+|+|+|.+|+.++..|++. |. .+++++|.+.-
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~-GV----g~i~LvD~D~V 46 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS-GV----GKLTLIDFDVV 46 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCEE
Confidence 5899999999999999999999 83 68999988753
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.80 E-value=3.6 Score=39.65 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=31.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..++|.|||+|..|..=+..|.+. | .+|++|+.+.
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~-g-----a~v~Vvs~~~ 45 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKA-G-----ADVTVVSPEF 45 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcCCc
Confidence 446899999999999999999998 8 8999998775
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=86.80 E-value=3.3 Score=43.30 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=27.8
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCC--CEEEEEeecC
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGV 200 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~--~iIIs~tkGi 200 (461)
...+.|++|.|.++...+++...++. . + .++|+.+.-+
T Consensus 61 ~~~~vDivffa~g~~~s~~~~p~~~~---a---G~~~~VIDnSSa~ 100 (366)
T TIGR01745 61 ALKALDIIITCQGGDYTNEIYPKLRE---S---GWQGYWIDAASSL 100 (366)
T ss_pred cccCCCEEEEcCCHHHHHHHHHHHHh---C---CCCeEEEECChhh
Confidence 46789999999999977777766553 2 5 5677777554
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.78 E-value=0.77 Score=47.10 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=29.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+.|+|||+|.-|+++|..|++. ++|.++++.++
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-------~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-------MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-------CCEEEEECCCc
Confidence 5799999999999999999876 68999998864
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=86.67 E-value=0.89 Score=47.67 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=29.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++|.|||+|..|.++|..|++. | .+|.++.++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G-----~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-N-----KRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence 5799999999999999999988 7 8999998753
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.65 E-value=0.78 Score=49.47 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
..|.|||+|..|.++|..|++. | ++|+++++.++.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~-G-----i~v~viE~~~~~ 38 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARR-G-----VSFRLIEKAPEP 38 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCCC
Confidence 4699999999999999999999 8 999999987643
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.59 E-value=0.99 Score=47.91 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=0.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
||||.|||+|.-|...|..|.+. + ++++|++++++.
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~-~---~~~~I~li~~~~ 36 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRL-D---KESDIIIFEKDR 36 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhh-C---CCCCEEEEECCC
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=86.49 E-value=0.94 Score=48.34 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=31.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|+|||+|..|.+.|..|++. | ++|+++++..
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~-G-----~~V~vie~~~ 166 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKA-G-----HSVTVFEALH 166 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 47999999999999999999998 8 8999999864
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=86.46 E-value=1.3 Score=40.68 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=32.5
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
..+.||+|+|+|..|..-+..+..- | ++|+.++.+.+..+.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-G-----a~v~~~d~~~~~~~~ 58 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-G-----AEVVVPDERPERLRQ 58 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-T------EEEEEESSHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-C-----CEEEeccCCHHHHHh
Confidence 4468999999999999988888877 8 999999998765543
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.45 E-value=1.6 Score=41.74 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=32.5
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~-g-----~~vi~~~r~~~~~~ 44 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE-G-----ASVVVADINAEGAE 44 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 67999998 99999999999998 8 89999999875443
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.45 E-value=1.1 Score=42.85 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=31.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
++|.|.|+ |.+|.+++..|++. | ++|.+++|+.+..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~-g-----~~v~~~~r~~~~~ 39 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR-G-----YRVLAACRKPDDV 39 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHh
Confidence 37999998 99999999999998 8 8999999987644
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=0.77 Score=51.35 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=32.2
Q ss_pred CceEEEECccHHHHHHHHHHHH-hcCCCCCCeeEEEEecCchh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQD-SYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~-~~G~~~~~~~V~l~~r~~~~ 84 (461)
.++|.|||||..|.++|..|++ . | .+|.++++.++.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~-G-----i~v~IiE~~~~~ 68 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFP-D-----ITTRIVERKPGR 68 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCC-C-----CcEEEEEcCCCC
Confidence 5789999999999999999998 7 7 899999988654
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=86.35 E-value=11 Score=34.44 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=27.8
Q ss_pred ceEEEEC-c-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVG-A-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIG-a-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||++|| . +++..+++..+++- | .+|++.....
T Consensus 3 l~i~~vGD~~~rv~~Sl~~~~~~~-g-----~~~~~~~P~~ 37 (158)
T PF00185_consen 3 LKIAYVGDGHNRVAHSLIELLAKF-G-----MEVVLIAPEG 37 (158)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHT-T-----SEEEEESSGG
T ss_pred CEEEEECCCCChHHHHHHHHHHHc-C-----CEEEEECCCc
Confidence 6899999 4 89999999999987 7 7788887655
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.29 E-value=2.5 Score=42.57 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=34.1
Q ss_pred HHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 33 RRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 33 ~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
++-+.....+..||+|+|| |-+|..++..|..+ -+. .+..+||..
T Consensus 18 ~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~n-p~V---s~LaLYDi~ 63 (345)
T KOG1494|consen 18 KRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLN-PLV---SELALYDIA 63 (345)
T ss_pred cccccccccCcceEEEEecCCccCccHHHHHhcC-ccc---ceeeeeecc
Confidence 4456666777789999997 99999999999877 322 356788765
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.11 E-value=1.2 Score=43.99 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..|.|||+|.-|.+.|..|++. | .+|.++.+...
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~-G-----~~V~liEk~~~ 59 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKA-G-----LKVAVFERKLS 59 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence 4699999999999999999998 8 89999988753
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.10 E-value=1.6 Score=41.58 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=33.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++++.|.|+ |.+|..++..|++. | ++|.+.+|+++..+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 44 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKA-G-----WDLALVARSQDALE 44 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 3467899996 99999999999998 8 89999999876443
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=86.01 E-value=0.95 Score=48.93 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|.|||+|-=|.+-|..||++ | ++|.++.++.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~-G-----~~V~VlE~~~ 36 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARA-G-----LKVTVLEKND 36 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhC-C-----CEEEEEEecC
Confidence 46899999999999999999999 9 9999998764
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=85.97 E-value=1 Score=41.74 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=26.1
Q ss_pred EEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhh
Q 012547 47 VGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVD 86 (461)
Q Consensus 47 ~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~ 86 (461)
+|||||.-|.+.|..|.+. | .+ |.+++++.+.-.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-g-----~~~v~v~e~~~~~Gg 35 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-G-----IDPVVVLERNDRPGG 35 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-T--------EEEEESSSSSTT
T ss_pred CEECcCHHHHHHHHHHHhC-C-----CCcEEEEeCCCCCCC
Confidence 5999999999999999999 8 66 999999865433
|
... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.94 E-value=6.2 Score=39.38 Aligned_cols=101 Identities=10% Similarity=0.040 Sum_probs=60.3
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.++.||.|||+|--|+ ++-+.+. . .+|++++.+++.++..+ +|+|.+.+.
T Consensus 71 ~~pk~VLIiGGGDGg~--~REvLkh-~-----~~v~mVeID~~Vv~~~k----------------------~~lP~~~~~ 120 (262)
T PRK00536 71 KELKEVLIVDGFDLEL--AHQLFKY-D-----THVDFVQADEKILDSFI----------------------SFFPHFHEV 120 (262)
T ss_pred CCCCeEEEEcCCchHH--HHHHHCc-C-----CeeEEEECCHHHHHHHH----------------------HHCHHHHHh
Confidence 3468999999999764 4555554 2 58999999998766311 245543322
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh-cCCCEEEEc-CCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVING-LPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av-~~aDiIIia-Vps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
+.| ++++......+.- +..|+||+= +++ ++..+.+...|++ +- +++++.
T Consensus 121 ~~D----------------------pRv~l~~~~~~~~~~~fDVIIvDs~~~---~~fy~~~~~~L~~---~G-i~v~Qs 171 (262)
T PRK00536 121 KNN----------------------KNFTHAKQLLDLDIKKYDLIICLQEPD---IHKIDGLKRMLKE---DG-VFISVA 171 (262)
T ss_pred hcC----------------------CCEEEeehhhhccCCcCCEEEEcCCCC---hHHHHHHHHhcCC---Cc-EEEECC
Confidence 222 2333333333322 568999987 443 4555666777776 44 445666
Q ss_pred cC
Q 012547 199 GV 200 (461)
Q Consensus 199 Gi 200 (461)
|-
T Consensus 172 ~s 173 (262)
T PRK00536 172 KH 173 (262)
T ss_pred CC
Confidence 63
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=85.91 E-value=1 Score=48.89 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=30.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
...|+|||+|.||+++|..|++. + ++.+|.++.+...
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~-~---~g~~V~VlEk~~~ 41 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKEL-E---PEWSITMFERLDG 41 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHh-C---CCCeEEEEEcCCc
Confidence 35799999999999999999984 2 1168999998753
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=85.90 E-value=1 Score=47.76 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
...|.|||+|.-|++.|..|+++ | ++|.++.+...
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~-G-----~~V~llEr~~~ 39 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE-G-----AQVLVIERGNS 39 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC-C-----CeEEEEEcCCC
Confidence 35799999999999999999999 8 89999998753
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=85.87 E-value=0.96 Score=46.98 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=29.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.|.|||+|.-|++.|..|++. | .+|.++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-G-----~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-G-----IETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECC
Confidence 589999999999999999999 8 899999987
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=85.79 E-value=0.83 Score=48.39 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=28.5
Q ss_pred eEEEECccHHHHHHHHHHHH----hcCCCCCCeeEEEEecC
Q 012547 45 RIVGVGAGAWGSVFTAMLQD----SYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~----~~G~~~~~~~V~l~~r~ 81 (461)
.|.|||+|..|.++|..|++ . | .+|.++++.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~-G-----~~v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTK-D-----LKVLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccC-C-----CeEEEEeCC
Confidence 48999999999999999998 7 7 899999984
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.78 E-value=1.6 Score=41.23 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=32.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|.|+|+ |.+|..++..|++. | ++|.+.+|+++..+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g-----~~V~~~~r~~~~~~ 44 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-G-----YKVAITARDQKELE 44 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-C-----CEEEEeeCCHHHHH
Confidence 67999996 99999999999998 8 88999999876543
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=85.75 E-value=1.3 Score=45.29 Aligned_cols=45 Identities=22% Similarity=0.068 Sum_probs=36.6
Q ss_pred HHHHHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 30 DELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 30 ~~~~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+|||-.+-|.. |||.|.|+ |.+|+.++..|.+. | ++|+.++|...
T Consensus 5 ~~~~~~~~~~~---~~vlVtGatGfiG~~lv~~L~~~-g-----~~V~~~d~~~~ 50 (348)
T PRK15181 5 EELRTKLVLAP---KRWLITGVAGFIGSGLLEELLFL-N-----QTVIGLDNFST 50 (348)
T ss_pred hhhhhcccccC---CEEEEECCccHHHHHHHHHHHHC-C-----CEEEEEeCCCC
Confidence 46666654433 79999996 99999999999998 7 89999998653
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.71 E-value=1.1 Score=47.85 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++++|+|||+|--|.+.|..|++. | ++|+++..+.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~-g-----~~v~v~E~~~ 37 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKR-G-----YPVTVLEADP 37 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 456899999999999999999998 8 8999998764
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=85.68 E-value=0.96 Score=46.61 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=29.3
Q ss_pred CceEEEECccHHHHHHHHHHHHh--cCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS--YGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~--~G~~~~~~~V~l~~r~ 81 (461)
+++|.|||+|..|.++|..|++. .| ++|+++++.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G-----~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGG-----LPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCC-----CEEEEEeCC
Confidence 36799999999999999999873 15 899999995
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=85.66 E-value=1.3 Score=43.80 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..|.|||+|.-|.+.|..|++. | .+|.++.++..
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~-G-----~~V~vlEk~~~ 55 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKN-G-----LKVCVLERSLA 55 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 5799999999999999999999 8 89999988763
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=85.66 E-value=1.6 Score=47.44 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=41.4
Q ss_pred cccccchhHHhhHHHHHhhcC------CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012547 18 IHHTNGSLEERLDELRRLMGK------AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (461)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~------~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~ 79 (461)
+++-.-+.++-++.++...+. ......+|.|||+|..|.+.|..+++. | ++|++++
T Consensus 181 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dVvIIGgGpAGl~AA~~la~~-G-----~~v~li~ 242 (515)
T TIGR03140 181 FHNGRMDLAELLEKLEETAGVEAASALEQLDPYDVLVVGGGPAGAAAAIYAARK-G-----LRTAMVA 242 (515)
T ss_pred EEecCCCHHHHHHHHhhccCcccchhccccCCCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEe
Confidence 344455666666776655222 223457899999999999999999998 8 8999885
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=85.58 E-value=1 Score=46.90 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=28.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
-.|+|||+|.+|+++|..|++..|+ .+|.+++++.
T Consensus 31 ~dvvIIGgGi~G~s~A~~L~~~~g~----~~V~vle~~~ 65 (407)
T TIGR01373 31 YDVIIVGGGGHGLATAYYLAKEHGI----TNVAVLEKGW 65 (407)
T ss_pred CCEEEECCcHHHHHHHHHHHHhcCC----CeEEEEEccc
Confidence 3699999999999999999983151 3899999864
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=85.55 E-value=2.3 Score=44.02 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=35.7
Q ss_pred HHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 31 ELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 31 ~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++...+|.. ...||.|||+|-||...+..|.++ |. .+|++.+|+.+
T Consensus 164 ~~~~~~~~l--~~k~vLvIGaGem~~l~a~~L~~~-g~----~~i~v~nRt~~ 209 (338)
T PRK00676 164 QELRRRQKS--KKASLLFIGYSEINRKVAYYLQRQ-GY----SRITFCSRQQL 209 (338)
T ss_pred HHHHHhCCc--cCCEEEEEcccHHHHHHHHHHHHc-CC----CEEEEEcCCcc
Confidence 333445443 346899999999999999999998 72 57999999864
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.55 E-value=0.96 Score=47.05 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=29.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
||+|||+|.-|.+.|..|++. | ++|+++.++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G-----~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-G-----HEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CcEEEEEeCC
Confidence 689999999999999999999 8 8999998765
|
|
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=85.47 E-value=3.7 Score=40.78 Aligned_cols=112 Identities=26% Similarity=0.275 Sum_probs=65.5
Q ss_pred ceEEEECccHHHHHHHHHHHHh---cCCCC--CCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDS---YGYLR--DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~---~G~~~--~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
.||.|+|+|+-|.++|..|... .|.-. ...+++++|+..=..+. .+.+ +... ..|....
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~--r~~l----~~~~---------~~~a~~~- 89 (255)
T PF03949_consen 26 QRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD--REDL----NPHK---------KPFARKT- 89 (255)
T ss_dssp -EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT--TSSH----SHHH---------HHHHBSS-
T ss_pred cEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc--CccC----Chhh---------hhhhccC-
Confidence 6899999999999999998754 14100 00368888887532211 0000 0000 0011100
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCC--CEEEEc--CCchhHHHHHHHHHHHhhccCCCCEEE
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA--DIVING--LPSTETKEVFEEISRYWKERITVPVII 194 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~a--DiIIia--Vps~~~~~vl~~i~~~l~~~~~~~iII 194 (461)
.......++.++++.+ |++|=+ +|--+.+++++.+.++.. ..+|.
T Consensus 90 ---------------------------~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~e----rPIIF 138 (255)
T PF03949_consen 90 ---------------------------NPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNE----RPIIF 138 (255)
T ss_dssp ---------------------------STTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSS----SEEEE
T ss_pred ---------------------------cccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCC----CCEEE
Confidence 0122236899999988 988876 456789999999998866 36778
Q ss_pred EEeecCcc
Q 012547 195 SLAKGVEA 202 (461)
Q Consensus 195 s~tkGi~~ 202 (461)
.++|-.+.
T Consensus 139 ~LSNPt~~ 146 (255)
T PF03949_consen 139 PLSNPTPK 146 (255)
T ss_dssp E-SSSCGG
T ss_pred ECCCCCCc
Confidence 88887664
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.44 E-value=1.5 Score=41.90 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=32.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+|+|.|.|+ |.+|.+++..|++. | ++|++.+|+++..+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~-G-----~~Vi~~~r~~~~~~ 39 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA-G-----ARLYLAARDVERLE 39 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc-C-----CEEEEEeCCHHHHH
Confidence 358999995 99999999999998 8 89999999976544
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=85.40 E-value=1.3 Score=45.29 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=34.9
Q ss_pred cCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 37 GKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 37 ~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
.+...+.|+|.|.|+ |.+|+.++..|.+. | ++|+...|+.+.
T Consensus 4 ~~~~~~~~~vlVTGatGfIG~~l~~~L~~~-G-----~~V~~~~r~~~~ 46 (342)
T PLN02214 4 DVASPAGKTVCVTGAGGYIASWIVKILLER-G-----YTVKGTVRNPDD 46 (342)
T ss_pred ccccCCCCEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEeCCchh
Confidence 344445678999998 99999999999999 8 899999997653
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.39 E-value=1.9 Score=41.02 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=32.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++|.|.|+ |.+|.++|..|++. | ++|.+++|+++..+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~-G-----~~v~~~~r~~~~~~ 45 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA-G-----ATVAFNDGLAAEAR 45 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 478999997 99999999999998 8 89999998876544
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.37 E-value=0.76 Score=47.56 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=30.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..+|||+|||+|--|.+-|..|++. |+|+++.-+.
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-------hdVTLfEA~~ 40 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-------HDVTLFEADR 40 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-------cceEEEeccc
Confidence 3568999999999999999999987 8999996553
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=85.32 E-value=2.2 Score=46.16 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|+|||+|..|...|..|++. | ++|+++++.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~-g-----~~V~v~e~~~ 176 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA-G-----HTVTVFERED 176 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-C-----CeEEEEecCC
Confidence 37999999999999999999998 8 8999998765
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=85.28 E-value=1.1 Score=48.12 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=30.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++|+|||+|.-|.+.|..|+++ | ++|.++.++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-G-----~~v~vlE~~~ 34 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-G-----YRVTLLEQHA 34 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 4799999999999999999999 8 8999998774
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.25 E-value=2.5 Score=42.57 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=23.6
Q ss_pred ceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeEEEE
Q 012547 44 LRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIW 78 (461)
Q Consensus 44 mkI~IIGaG-amG~alA~~La~~~G~~~~~~~V~l~ 78 (461)
++|+|||-+ .+|..+|..|.+. | ..|+++
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~-~-----AtVti~ 187 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNA-N-----ATVDIC 187 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHC-C-----CEEEEe
Confidence 589999977 8899999998877 5 777765
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=85.23 E-value=1.4 Score=40.55 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=28.7
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+|.|||+|.-|.+.|..|++. | .+|.+++...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~-----~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-G-----AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T-----SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-C-----CeEEEEeccc
Confidence 689999999999999999988 7 8999997654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.15 E-value=2.6 Score=42.40 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=23.6
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
++++.+++||+||.|++...+ +. ..++++ +++||.+.
T Consensus 188 ~L~~~~~~ADIvI~Avgk~~l---v~--~~~vk~---GavVIDVg 224 (279)
T PRK14178 188 NLKAELRQADILVSAAGKAGF---IT--PDMVKP---GATVIDVG 224 (279)
T ss_pred HHHHHHhhCCEEEECCCcccc---cC--HHHcCC---CcEEEEee
Confidence 345667889999999973321 11 123566 78887765
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.12 E-value=6.3 Score=38.40 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=29.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|.|||+|.+|..=+..|.+. | .+|++++..-
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~-g-----A~VtVVap~i 58 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKK-G-----CYVYILSKKF 58 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCC
Confidence 46899999999999988889888 7 8999998653
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=85.09 E-value=2.4 Score=45.82 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|.|+|.|..|.+.+..|... | .+|++++++.+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~-G-----~~v~~~D~~~~ 46 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF-G-----ARPTVCDDDPD 46 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC-C-----CEEEEEcCCHH
Confidence 5899999999999999988888 8 89999997653
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=85.06 E-value=1.4 Score=46.67 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|.|+|+|..|.++|..|++. | ++|++++++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~-G-----~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL-G-----AKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCc
Confidence 47899999999999999999999 8 9999999875
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.96 E-value=1.3 Score=42.40 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=31.3
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+|+|.|.|+ |.+|.+++..|++. | ++|.+.+|+.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~-G-----~~v~~~~r~~~ 36 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQP-G-----IAVLGVARSRH 36 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhC-C-----CEEEEEecCcc
Confidence 478999997 99999999999998 8 89999998764
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.96 E-value=1.8 Score=42.55 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=32.5
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|.|.|+ |.+|.++|..|++. | ++|.+.+|+.+.++
T Consensus 5 k~vlItGasggiG~~la~~l~~~-G-----~~Vi~~~r~~~~~~ 42 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSD-G-----WRVFATCRKEEDVA 42 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 47899998 99999999999998 8 89999999876544
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.94 E-value=1.6 Score=42.08 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=32.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+++.|.|+ |.+|.+++..|++. | ++|.+++|+.+.++.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~~ 40 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE-G-----WRVGAYDINEAGLAA 40 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHH
Confidence 46999996 99999999999999 8 899999998765543
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=84.89 E-value=1.3 Score=44.95 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=30.2
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
||||.|.|+ |.+|+.++..|.++.| ++|..++|+.+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-----~~V~~~~r~~~ 37 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-----WEVYGMDMQTD 37 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-----CeEEEEeCcHH
Confidence 479999997 9999999999986414 89999998754
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=84.85 E-value=1.2 Score=51.93 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=31.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
..+||+|||+|.-|.+.|..|++. | |+|++++..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-G-----h~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-G-----HNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-C-----CeEEEEccc
Confidence 457999999999999999999998 8 999999974
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.85 E-value=1.7 Score=41.30 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=32.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|.|+|+ |.+|.+++..|++. | ++|++.+|+++..+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~-G-----~~V~~~~r~~~~~~ 43 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAE-G-----ARVVVTDRNEEAAE 43 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 68999997 99999999999998 8 88999999986544
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.84 E-value=16 Score=36.79 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=69.7
Q ss_pred CeEEecCHHHHhcCCCEEEEcCCchh-HHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCC
Q 012547 147 PLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPI 225 (461)
Q Consensus 147 ~i~~t~dl~~av~~aDiIIiaVps~~-~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~ 225 (461)
++++++|-.||++++|++|+.+|--. ...+++++.+++++ +++|.. +=.+++. .+...+++ +++.
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipE---gAII~~-tCTIpt~--------~ly~~le~-l~R~- 193 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKE---GAIVTH-ACTIPTT--------KFAKIFKD-LGRD- 193 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCC---CCEEec-cccCCHH--------HHHHHHHH-hCcc-
Confidence 68888888899999999999999654 78999999999998 564433 3234332 12233333 4432
Q ss_pred CcEEEEeC-cchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEe-cCChHH
Q 012547 226 ENILYLGG-PNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD-NGDLVT 279 (461)
Q Consensus 226 ~~v~vlsG-Pn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~-s~Di~g 279 (461)
.+.+.|. |.-.- ...|+.....--.+++..+++.++-.+.+-..|. ..|+++
T Consensus 194 -DvgIsS~HPaaVP-gt~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvs 247 (342)
T PRK00961 194 -DLNVTSYHPGAVP-EMKGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIG 247 (342)
T ss_pred -cCCeeccCCCCCC-CCCCceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcc
Confidence 2222222 22111 0113321111112567888888888887766664 456665
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=84.82 E-value=1.4 Score=48.80 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=32.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.++||+|||+|..|.+.|..|++. | ++|+++.+.+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~-g-----~~v~i~E~~~~ 109 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQ-G-----HEVDIYESRPF 109 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-C-----CeeEEEecCCC
Confidence 347999999999999999999999 8 99999987653
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.77 E-value=2.8 Score=48.96 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=33.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (461)
..||+|||+|..|+.++..|+.. |. .+++++|.+.-....+|
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAra-GV----G~I~L~D~D~Ve~SNLN 373 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLART-GI----GNFNLADFDAYSPVNLN 373 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHc-CC----CeEEEEcCCEecccccc
Confidence 36899999999999999999999 83 57888887754433333
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=84.74 E-value=1.4 Score=45.70 Aligned_cols=35 Identities=29% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..|||.|.|+ |.+|+.++..|.+. | ++|+.++|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~-G-----~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE-G-----HYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC-C-----CEEEEEEecc
Confidence 4589999998 99999999999998 8 9999999864
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.67 E-value=1.7 Score=43.38 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=33.3
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
++|.|.|+ |.+|.++|..|++. | ++|.+.+|+.+.++.
T Consensus 41 k~vlItGasggIG~~la~~La~~-G-----~~Vi~~~R~~~~l~~ 79 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARR-G-----ATVVAVARREDLLDA 79 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 67999997 99999999999999 8 899999999765543
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.61 E-value=1.2 Score=47.42 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|||.|||+|.-|.+.|..+++. | .+|.+++++.
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~-g-----~~V~lie~~~ 33 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQN-G-----KNVTLIDEAD 33 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCc
Confidence 6999999999999999999998 8 8999999863
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.51 E-value=1.3 Score=47.54 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|++|.|||+|..|...|..+++. | ++|.++.++.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~-g-----~~v~~~e~~~ 34 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQL-G-----ADVTVIERDG 34 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEccC
Confidence 46899999999999999999998 8 8999998753
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.31 E-value=1.4 Score=47.69 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..|.|||+|..|.++|..|++. | .+|.++++.++
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~-G-----i~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLC-G-----LNTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHc-C-----CCEEEEeCCCc
Confidence 5799999999999999999998 8 89999998864
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=84.27 E-value=1.2 Score=45.72 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=29.3
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|.|||+|..|+++|..|++. | +++|+++.+...
T Consensus 2 v~IvGaG~aGl~~A~~L~~~-G----~~~v~v~E~~~~ 34 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL-G----KIKIALIEANSP 34 (382)
T ss_pred EEEECccHHHHHHHHHHhcC-C----CceEEEEeCCCc
Confidence 89999999999999999998 6 268999998754
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.19 E-value=3.1 Score=41.90 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=20.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEE
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIW 78 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~ 78 (461)
++|+|||- ..+|..+|..|.+. | ..|+++
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~-~-----atVtic 186 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNH-D-----ATVTIA 186 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHC-C-----CEEEEE
Confidence 57888884 56777888887766 5 666665
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=83.97 E-value=1.2 Score=47.29 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=26.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+|.|||+|+-|...|..+++. | .+|.++.++++.-+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~-g-----~~V~vlE~~~~~gk 37 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEK-G-----ARVLVLERNKRVGK 37 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHT-T-------EEEE-SSSSS-H
T ss_pred cEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCccccc
Confidence 589999999999999999999 8 99999999986543
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=83.94 E-value=1.5 Score=51.57 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=31.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..++|+|||+|.-|.+.|..|++. | ++|+++++.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~-G-----~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA-G-----HPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccc
Confidence 347899999999999999999999 8 9999998764
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.90 E-value=2.3 Score=40.45 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=32.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|.|.|+ |.+|.+++..|++. | ++|.+++|+++..+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~-g-----~~V~~~~r~~~~~~ 44 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAA-G-----ATVILVARHQKKLE 44 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHc-C-----CEEEEEeCChHHHH
Confidence 58999996 99999999999998 8 89999999986544
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.83 E-value=2.4 Score=41.24 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=32.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.+++.|.|+ |.+|.++|..|++. | ++|.+.+|+.+..+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~-G-----~~V~~~~r~~~~~~ 44 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAA-G-----ARVAIVDIDADNGA 44 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 368999997 99999999999999 8 89999999876544
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.82 E-value=2.3 Score=41.66 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=32.5
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++|.|.|+ |.+|.+++..|++. | ++|.+++|+.+..+
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 44 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL-G-----MKLVLADVQQDALD 44 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC-C-----CEEEEEeCChHHHH
Confidence 367999996 89999999999999 8 89999999876544
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=3.3 Score=42.06 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=23.4
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEE
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~ 196 (461)
|+++..++||+||.|+....+ +. ..++++ +++||.+
T Consensus 194 ~l~~~~~~ADIvIsAvGkp~~---i~--~~~ik~---gavVIDv 229 (297)
T PRK14186 194 DLASITREADILVAAAGRPNL---IG--AEMVKP---GAVVVDV 229 (297)
T ss_pred CHHHHHhhCCEEEEccCCcCc---cC--HHHcCC---CCEEEEe
Confidence 455667889999999964432 11 235666 6777654
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=83.74 E-value=7.7 Score=39.01 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=42.6
Q ss_pred ecCHHHHhcC-CC-EEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 151 VTNLQEAVWD-AD-IVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 151 t~dl~~av~~-aD-iIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
..++++.+.. +| ++|=.+.+..+.+.++.... . +..+|.-|.|+..+. . +.+.+.- .+
T Consensus 58 ~~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~~~---~---gv~~ViGTTG~~~~~--------~-~~l~~~~-----~i 117 (275)
T TIGR02130 58 EARIGEVFAKYPELICIDYTHPSAVNDNAAFYGK---H---GIPFVMGTTGGDREA--------L-AKLVADA-----KH 117 (275)
T ss_pred cccHHHHHhhcCCEEEEECCChHHHHHHHHHHHH---C---CCCEEEcCCCCCHHH--------H-HHHHHhc-----CC
Confidence 5778887766 89 77878877777666555443 2 456777888887652 1 1122221 24
Q ss_pred EEEeCcchhH
Q 012547 229 LYLGGPNIAS 238 (461)
Q Consensus 229 ~vlsGPn~a~ 238 (461)
.++..|||..
T Consensus 118 ~~l~apNfSi 127 (275)
T TIGR02130 118 PAVIAPNMAK 127 (275)
T ss_pred CEEEECcccH
Confidence 5678888865
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 461 | ||||
| 1wpq_A | 349 | Ternary Complex Of Glycerol 3-Phosphate Dehydrogena | 7e-11 | ||
| 1x0x_A | 354 | Co-Structure Of Homo Sapiens Glycerol-3-Phosphate D | 2e-10 | ||
| 2pla_A | 349 | Crystal Structure Of Human Glycerol-3-Phosphate Deh | 9e-10 | ||
| 1x0v_A | 354 | Crystal Structure Of Homo Sapien Glycerol-3-Phospha | 2e-09 | ||
| 1txg_A | 335 | Structure Of Glycerol-3-Phosphate Dehydrogenase Fro | 2e-05 | ||
| 4fgw_A | 391 | Structure Of Glycerol-3-phosphate Dehydrogenase, Gp | 2e-05 | ||
| 1z82_A | 335 | Crystal Structure Of Glycerol-3-Phosphate Dehydroge | 3e-04 | ||
| 1evy_A | 366 | Crystal Structure Of Leishmania Mexicana Glycerol-3 | 3e-04 | ||
| 3k96_A | 356 | 2.1 Angstrom Resolution Crystal Structure Of Glycer | 3e-04 |
| >pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1 With Nad And Dihydroxyactone Length = 349 | Back alignment and structure |
|
| >pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate Dehydrogenase 1 Complex With Nad Length = 354 | Back alignment and structure |
|
| >pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate Dehydrogenase 1-Like Protein Length = 349 | Back alignment and structure |
|
| >pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate Dehydrogenase 1 Length = 354 | Back alignment and structure |
|
| >pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From Archaeoglobus Fulgidus Length = 335 | Back alignment and structure |
|
| >pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1, From Sacharomyces Cerevisiae Length = 391 | Back alignment and structure |
|
| >pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase (Tm0378) From Thermotoga Maritima At 2.00 A Resolution Length = 335 | Back alignment and structure |
|
| >pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-phosphate Dehydrogenase Length = 366 | Back alignment and structure |
|
| >pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella Burnetii Length = 356 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 461 | |||
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 4e-30 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 6e-28 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 2e-23 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 3e-16 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 6e-15 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 5e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 3e-06 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 5e-06 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 3e-04 |
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} Length = 375 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 4e-30
Identities = 80/422 (18%), Positives = 143/422 (33%), Gaps = 93/422 (22%)
Query: 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIW-RRPGRSVDRA 88
R L K + PL+I +G+G W S + ++ + ++V R+W R
Sbjct: 11 RNLFDKLKDGPLKISILGSGNWASAISKVVGTNAKNNYLFENEV--RMWIRDE-----FV 63
Query: 89 TAEHLFEVINS-REDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCP 147
E + ++IN+ E+ KY L L +
Sbjct: 64 NGERMVDIINNKHENT-----------KY----LKGVPLPHN------------------ 90
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERIT-VPVIISLAKGVEAELEA 206
+ ++L + DAD++I +P + V I +I ISL KG +
Sbjct: 91 IVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQ 150
Query: 207 VPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLR 265
+ + I+ +P L G NIA ++ + ++ A I + +
Sbjct: 151 MKLC---SNYISDFLNIP---CSALSGANIAMDVAMENFSEATIGGNDKDSLVIWQRVFD 204
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAALT-------NESATSKSVYFAHCT---SEM 315
P+F + + + E+ G LKN+ + N + A +EM
Sbjct: 205 LPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKS-------AIIRNGINEM 257
Query: 316 V-FITHLLAEEPEK----LAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIK--G 368
+ F + E G AD + L GRNA E K +
Sbjct: 258 ILFGKVFFQKFNENILLESCG--FADIITSFLAGRNAKCSAEFIKSTPKKTWEELENEIL 315
Query: 369 KGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAI 427
KG +QG +K Y ++ + +++ P+ +L+KI E P +
Sbjct: 316 KGQKLQGTVTLKYVYHMIKEKNMT-------------NEFPLFTVLHKISFENEDPSSLL 362
Query: 428 LE 429
Sbjct: 363 KT 364
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* Length = 354 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 6e-28
Identities = 85/416 (20%), Positives = 151/416 (36%), Gaps = 91/416 (21%)
Query: 43 PLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINS- 99
++ VG+G WGS ++ + + + +W + L E+IN+
Sbjct: 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEE-----DIGGKKLTEIINTQ 62
Query: 100 REDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW 159
E+V KY L L + + V ++ +A
Sbjct: 63 HENV-----------KY----LPGHKLPPN------------------VVAVPDVVQAAE 89
Query: 160 DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINR 219
DADI+I +P ++ +++ + K ISL KGV+ + I +++I
Sbjct: 90 DADILIFVVPHQFIGKICDQLKGHLKAN---ATGISLIKGVDEGPNGLKLI---SEVIGE 143
Query: 220 ATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLV 278
G+P+ L G NIASE+ ++++ I C + L + ++ P+F + ++
Sbjct: 144 RLGIPM---SVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVD 200
Query: 279 THEVMGGLKNVYAIGAALT-------NESATSKSVYFAHCT---SEMV-FITHLLAEEPE 327
T E+ G LKNV A+GA N A A EM+ F +
Sbjct: 201 TVEICGALKNVVAVGAGFCDGLGFGDNTKA-------AVIRLGLMEMIAFAKLFCSGPVS 253
Query: 328 K-----LAGPLLADTYVTLLKGRNAWYGQELAKGRLTLD-LGDSIKGKGMIQGISAVKAF 381
G +AD T GRN + A+ +++ L + +QG +
Sbjct: 254 SATFLESCG--VADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETAREL 311
Query: 382 YELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEAL-RDETM 436
Y +L L V+ P+ +YK+ + + I E M
Sbjct: 312 YSILQHKGL-------------VDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM 354
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 Length = 335 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 2e-23
Identities = 74/412 (17%), Positives = 136/412 (33%), Gaps = 110/412 (26%)
Query: 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
+ +GAGA GS + L D+ G +V RIW G D + I++
Sbjct: 2 IVSILGAGAMGSALSVPLVDN-GN---EV--RIW---GTEFDTEILKS----ISAG---- 44
Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
R R + + L++ + +A++V
Sbjct: 45 REHPR---LG--------------------------VKLNGVEIFWPEQLEKCLENAEVV 75
Query: 165 INGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP 224
+ G+ + V I Y K+ I+ ++KG+ ++T + + R
Sbjct: 76 LLGVSTDGVLPVMSRILPYLKD----QYIVLISKGLIDFDN---SVLTVPEAVWRLKHDL 128
Query: 225 IENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVM 283
E + + GP IA E+ + +E + + +F V D++ E+
Sbjct: 129 RERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTTDIIGTEIT 188
Query: 284 GGLKNVYAIGA--------ALTNESATSKSVYFAHCTSEMVFITHLLAE----------E 325
LKNVY+I E + +K V T + E +
Sbjct: 189 SALKNVYSIAIAWIRGYESRKNVEMSNAKGV----------IATRAINEMAELIEILGGD 238
Query: 326 PEKLAGPLLA---DTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQ-----GISA 377
E G L+ D T GRN G+ L KG ++D ++++ G
Sbjct: 239 RETAFG--LSGFGDLIATFRGGRNGMLGELLGKGL-SID--EAMEELERRGVGVVEGYKT 293
Query: 378 VKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE 429
+ Y L S+ + + +L +Y++L + + E
Sbjct: 294 AEKAYRLSSKIN--------------ADT-KLLDSIYRVLYEGLKVEEVLFE 330
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} Length = 356 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 82/446 (18%), Positives = 144/446 (32%), Gaps = 133/446 (29%)
Query: 18 IHHTNGSLEERLDELRRLMGKA---EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL 74
+HH + L ++ E I +GAG+WG+ +L G KV
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSNAMEPFKHPIAILGAGSWGTALALVLARK-GQ---KV- 55
Query: 75 IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKD 134
R+W VD AE +N+R YL +
Sbjct: 56 -RLWSYESDHVDEMQAEG----VNNR------------YLP-------NYPFPET----- 86
Query: 135 GFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194
LK +L+ ++ ++ +PS EV + + I
Sbjct: 87 -------------LKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAK---TRIA 130
Query: 195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGA 253
KG+ +++ + + + GP++A+E+ +
Sbjct: 131 WGTKGLAKGSR------LLHEVVATE--LGQVPMAVISGPSLATEVAANLPTAVSLASNN 182
Query: 254 EKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIG--------------AALTNE 299
++ K L + L F V+ N D++ E+ G +KN+ AI AAL
Sbjct: 183 SQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAAL--- 239
Query: 300 SATSKSVYFAHCTSEMVFITHLLAE----------EPEKLAGPLLA---DTYVTL--LKG 344
IT L E + E L G LA D +T +
Sbjct: 240 ------------------ITRGLTEMGRLVSVFGGKQETLTG--LAGLGDLVLTCTDNQS 279
Query: 345 RNAWYGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVAT 403
RN +G L +G ++ + G I+G+ + L + +
Sbjct: 280 RNRRFGLALGEGV-DKK--EAQQAIGQAIEGLYNTDQVHALAQKHA-------------- 322
Query: 404 VELCPILKMLYKILIMRESPIQAILE 429
+E+ P+ +++IL P QA+ E
Sbjct: 323 IEM-PLTFQVHRILHEDLDPQQAVQE 347
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* Length = 366 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 6e-15
Identities = 71/422 (16%), Positives = 132/422 (31%), Gaps = 134/422 (31%)
Query: 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
+ V G+GA+G+ +L +V +W V + N
Sbjct: 17 KAVVFGSGAFGTALAMVLSKK-CR---EV--CVWHMNEEEVRLVNEKR----ENVL---- 62
Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
+LK L ++ + +++++A A+I+
Sbjct: 63 --------FLK-------GVQLASN------------------ITFTSDVEKAYNGAEII 89
Query: 165 INGLPSTETKEVFEEISRYWKERITVP--VIISLAKGVEAELEAVPRIITPTQMINRATG 222
+ +P+ + FE+ ++ KG+E P ++I
Sbjct: 90 LFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLK-----FPAEIIGEF-- 142
Query: 223 VPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFL--RRPHFTVWDNGDLVT 279
+P + L GP+ A E+ + I + L + + F W D V
Sbjct: 143 LPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDTVG 202
Query: 280 HEVMGGLKNVYAIG--------------AALTNESATSKSVYFAHCTSEMVFITHLLAE- 324
EV +KNV AIG AAL I L E
Sbjct: 203 CEVASAVKNVLAIGSGVANGLGMGLNARAAL---------------------IMRGLLEI 241
Query: 325 ---------EPEKLAGPLLA---DTYVT----LLKGRNAWYGQELAKGRLTLDLGDSIKG 368
+ + G LA D +T L RN G++L KG ++ + +
Sbjct: 242 RDLTAALGGDGSAVFG--LAGLGDLQLTCSSEL--SRNFTVGKKLGKGL-PIE--EIQRT 294
Query: 369 KGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAI 427
+G++ L Q V++ P+ +Y+I+ +++P A+
Sbjct: 295 SKAVAEGVATADPLMRLAKQLK--------------VKM-PLCHQIYEIVYKKKNPRDAL 339
Query: 428 LE 429
+
Sbjct: 340 AD 341
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} Length = 335 | Back alignment and structure |
|---|
Score = 71.7 bits (177), Expect = 5e-14
Identities = 77/422 (18%), Positives = 152/422 (36%), Gaps = 148/422 (35%)
Query: 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102
+R +GAG+WG+VF ML ++ G +V +W R E + ++IN
Sbjct: 14 EMRFFVLGAGSWGTVFAQMLHEN-GE---EV--ILWAR--------RKEIV-DLINVS-- 56
Query: 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDAD 162
Y++ ++ + ++ +L E + D
Sbjct: 57 ------HTSPYVE--------------------------ESKI-TVRATNDL-EEIKKED 82
Query: 163 IVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG 222
I++ +P +E + + ++++L+KG+E + ++++ G
Sbjct: 83 ILVIAIPVQYIREHLLRL------PVKPSMVLNLSKGIEIKTGK-----RVSEIVEEILG 131
Query: 223 VPIENILYLGGPNIASEIYNKEYANAR-----ICGAEKWRKPLAKFLRRPHFTVWDNGDL 277
P L GP+ A E+ A+ + A + K L K + +F V+ D+
Sbjct: 132 CPY---AVLSGPSHAEEV-------AKKLPTAVTLAGENSKELQKRISTEYFRVYTCEDV 181
Query: 278 VTHEVMGGLKNVYAIG--------------AALTNESATSKSVYFAHCTSEMVFITHLLA 323
V E+ G LKNV AI AAL T +
Sbjct: 182 VGVEIAGALKNVIAIAAGILDGFGGWDNAKAAL---------------------ETRGIY 220
Query: 324 E----------EPEKLAGPLLA---DTYVTL--LKGRNAWYGQELAKGRLTLDLGDSIKG 368
E + + G LA D VT RN +G+ +A+G ++
Sbjct: 221 EIARFGMFFGADQKTFMG--LAGIGDLMVTCNSRYSRNRRFGELIARGF-NPL--KLLES 275
Query: 369 KGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAI 427
++G VKA ++ ++ +++ PI + +Y+++ + P+Q++
Sbjct: 276 SNQVVEGAFTVKAVMKIAKENK--------------IDM-PISEEVYRVVYEGKPPLQSM 320
Query: 428 LE 429
+
Sbjct: 321 RD 322
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 8e-09
Identities = 64/504 (12%), Positives = 142/504 (28%), Gaps = 179/504 (35%)
Query: 2 VQTNEVVNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFT-A 60
+ + E ++ + S ++ + RL +V F
Sbjct: 45 ILSKEEIDHIIMS-----------KDAVSGTLRLFWTLLSKQEEMV--------QKFVEE 85
Query: 61 MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120
+L+ +Y +L + E ++ R Y+E R
Sbjct: 86 VLRINYKFLMSPI-------------------------KTEQRQPSMMTR----MYIEQR 116
Query: 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDAD----IVINGLP----STE 172
DR + +++ + L+ L++A+ + ++I+G+ +
Sbjct: 117 --DRLYNDNQVFAKYN--------VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 173 TKEVFEEISR--------YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP 224
+V +W ++L +P ++
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW---------LNLK-----------NCNSPETVLE-----M 201
Query: 225 IENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT--------VWDNGD 276
++ +LY PN S + RI + L + L+ + V +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRI---HSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 277 ----------LVT---HEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHL-- 321
L+T +V L +L + S T + + + +L
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-----LTPDEVKSLLLKYLDC 313
Query: 322 -LAEEPE--KLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAV 378
+ P P ++++ + + G T D + + I
Sbjct: 314 RPQDLPREVLTTNPRR----LSII-------AESIRDGLATWDNWKHVNCDKLTTII--- 359
Query: 379 KAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKIL-IMRES---PIQAILEAL-RD 433
+SSL+VL P E + ++ L + S P +L + D
Sbjct: 360 --------ESSLNVLEPAE------------YRKMFDRLSVFPPSAHIPTI-LLSLIWFD 398
Query: 434 ETMNDPRDRIEIAQTHVFYRPSLL 457
+D + ++ SL+
Sbjct: 399 VIKSDVMV---VVNK--LHKYSLV 417
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 1e-04
Identities = 67/488 (13%), Positives = 135/488 (27%), Gaps = 159/488 (32%)
Query: 1 MVQTNEVVNDSLSSNGLIHHTNGSL--EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVF 58
M+Q D ++ H +N L ELRRL+
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---------------------K 239
Query: 59 TAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEV-----INSREDVLRRLIRRCAY 113
+ ++ L + + + F + + +R +++ +
Sbjct: 240 SKPYENCLLVLLN-----VQ-------NAKAWNA-FNLSCKILLTTRF---KQVTDFLSA 283
Query: 114 LKYVEARLGDR--TLHADEILKDGF--CLNMIDTPL----C---PLKV---VTNLQE--A 157
L TL DE +K L+ L P ++ ++++ A
Sbjct: 284 ATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 158 VWD-------------ADIVINGLPSTETKEVFEEISRYWKE-RITVPVIISL-AKGVEA 202
WD + +N L E +++F+ +S + I ++ + +++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAK 262
++ + ++++ EK K
Sbjct: 403 DVM-----------------------------VVVNKLHKY-------SLVEKQPKESTI 426
Query: 263 FLRRPH-----FTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSV--YFAHCTSEM 315
+ V + H + + Y I ++ + YF
Sbjct: 427 SI---PSIYLELKVKLENEYALHRS---IVDHYNIPKTFDSDDLIPPYLDQYFYS----- 475
Query: 316 VFIT-HLL-AEEPEKLAGPLLADTYVTLLKGRNAWYGQEL--------AKGRLTLDLGDS 365
I HL E PE++ L ++ + Q++ A G + L
Sbjct: 476 -HIGHHLKNIEHPERMT--LFRMVFLDF-----RFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 366 IKGKGMIQGISAVKAFYELLSQSSLSVLH-PEENKPVATVELCPILKMLYKILIMRESPI 424
K I YE L + L L EEN + +L L+ + I
Sbjct: 528 KFYKPYICDNDPK---YERLVNAILDFLPKIEEN-----LICSKYTDLLRIALMAEDEAI 579
Query: 425 QAILEALR 432
EA +
Sbjct: 580 --FEEAHK 585
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 Length = 359 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 3e-06
Identities = 40/312 (12%), Positives = 79/312 (25%), Gaps = 51/312 (16%)
Query: 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
+G G G F A L G V W + +
Sbjct: 6 TYAVLGLGNGGHAFAAYLALK-GQ---SV--LAWDIDAQRIKEIQDRGAIIA-------- 51
Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
+ P + +++ AV DAD++
Sbjct: 52 --------EGPGLA------------------------GTAHPDLLTSDIGLAVKDADVI 79
Query: 165 INGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP 224
+ +P+ + I+ Y E + + G + + P I + +
Sbjct: 80 LIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILRENGAPEVTIGETSSML 139
Query: 225 IENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVM 283
G + I A + + L P + +N + +
Sbjct: 140 FTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGSVL--PQYVAVENVLHTSLTNV 197
Query: 284 GGLKNV-YAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLL 342
+ + + A ES T Y T + + + E +A + ++
Sbjct: 198 NAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEKVDAERIAIAKAFDLN-VPSVC 256
Query: 343 KGRNAWYGQELA 354
+ YGQ A
Sbjct: 257 EWYKESYGQSPA 268
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 5e-06
Identities = 30/235 (12%), Positives = 68/235 (28%), Gaps = 42/235 (17%)
Query: 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103
+++ G G + + G +V R+ +R
Sbjct: 3 VKVCVCGGGNGAHTLSGLAASRDGV---EV--RVLTLFADEAER---------------- 41
Query: 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADI 163
+ + V + G + + P + + + A+ AD+
Sbjct: 42 WTKALGADELTVIVNEKDGTQ----------------TEVKSRPKVITKDPEIAISGADV 85
Query: 164 VINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGV 223
VI +P+ + F+ ++ Y ++ + V + G E + + + +
Sbjct: 86 VILTVPAFAHEGYFQAMAPYVQDSALI-VGLPSQAGFEFQCRDILGDKAAAVSMMSFETL 144
Query: 224 PIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR----RPHFTVWDN 274
P + G + A + I G K PL+ P F + +
Sbjct: 145 PWACRIKEFGRKVEVLGTKSVLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKH 199
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* Length = 358 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 3e-04
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 7/153 (4%)
Query: 148 LKVVTNLQEAVWDADIVINGLP-STETKEVFEEISRYWKERITVPVIISLAKGVEAELEA 206
LKV ++ +EAV ADIVI LP + ++ ++ + E V ++ A++
Sbjct: 129 LKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK 188
Query: 207 VPRIITPTQMINRATGVP-IENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR 265
VP ++ +Y+ + E NK Y +I + ++ P
Sbjct: 189 DLGREDLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMPANL--- 245
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTN 298
V D VT V GL +
Sbjct: 246 --IGPVCDMCSAVTATVYAGLLAYRDAVTKILG 276
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 461 | |||
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 100.0 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 100.0 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 100.0 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 100.0 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 100.0 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 100.0 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 100.0 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.97 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.97 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.97 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.96 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.95 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.95 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.92 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.92 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.91 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.9 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.9 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.89 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.87 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.84 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.81 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.81 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.79 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.79 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.79 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.78 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.78 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.78 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.78 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.78 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.77 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.76 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.76 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.76 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.76 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.75 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.75 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.75 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.74 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.74 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.73 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.73 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.73 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.72 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.71 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.71 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.7 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.69 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.69 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.69 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.68 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.67 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.67 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.67 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.66 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.65 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.65 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.65 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.63 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.63 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.6 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.6 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.58 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.58 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.53 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.52 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.52 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.46 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.45 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.43 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.42 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.42 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.41 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.39 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.39 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.02 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.33 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.29 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.27 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.24 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.22 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.21 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.2 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.19 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.19 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.11 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.1 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.95 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.95 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.93 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.88 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.85 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.79 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.78 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.72 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 98.69 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.67 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.67 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.58 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.51 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.48 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.47 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.44 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.43 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.39 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.38 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.38 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.37 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.36 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.36 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.36 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.35 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.35 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.33 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.3 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.29 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.26 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.26 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.24 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.23 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.23 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.21 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.21 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.21 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.19 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.17 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.17 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.16 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.15 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.13 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.12 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.08 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.07 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.07 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.06 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.05 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.05 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.03 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.02 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.01 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.99 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 97.98 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 97.97 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 97.97 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 97.95 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.95 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.95 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 97.94 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 97.94 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.92 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.92 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.92 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 97.92 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.92 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.9 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 97.9 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 97.89 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 97.89 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.87 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.86 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.85 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.85 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 97.84 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 97.82 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 97.82 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 97.81 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.81 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.8 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.79 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.78 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.78 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 97.78 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.77 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 97.77 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 97.75 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 97.75 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.74 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.74 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 97.74 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.7 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.7 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.7 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.7 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.68 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.68 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 97.67 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 97.66 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.66 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.66 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 97.64 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.64 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.64 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.63 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.63 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.62 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.61 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 97.6 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.6 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.6 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.59 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 97.57 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.56 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.56 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.54 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.54 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.53 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.53 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.51 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.48 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.47 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.44 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.43 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.41 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.36 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.34 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 97.33 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.32 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.31 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.3 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.3 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.29 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.29 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.27 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.27 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.26 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.22 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.22 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.21 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.21 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.2 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.18 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.18 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.17 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.14 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.14 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.1 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.1 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.09 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.08 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.07 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.06 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.04 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.0 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 96.97 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.97 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 96.97 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.96 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.95 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 96.95 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 96.95 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 96.93 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 96.89 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.89 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.86 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 96.86 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 96.85 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 96.85 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.82 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 96.82 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 96.79 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 96.75 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.68 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 96.67 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.67 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.66 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.66 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.65 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 96.64 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 96.64 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 96.63 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.63 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.62 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 96.6 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.6 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 96.58 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.57 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.54 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 96.52 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 96.51 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.39 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 96.39 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 96.37 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.36 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 96.32 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 96.32 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 96.3 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.28 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.23 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 96.22 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 96.21 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.18 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.13 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 96.05 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.04 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.03 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 95.99 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 95.97 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 95.97 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 95.88 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 95.81 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 95.8 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 95.77 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.76 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 95.75 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.74 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 95.73 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.71 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 95.67 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.61 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.54 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.52 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.52 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 95.47 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 95.46 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 95.43 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.42 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.38 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 95.36 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.26 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.25 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 95.11 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 95.07 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 94.91 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 94.9 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 94.75 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 94.65 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 94.64 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 94.6 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 94.58 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 94.58 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 94.58 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 94.58 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 94.57 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 94.5 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 94.39 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.38 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 94.34 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 94.34 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 94.3 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.29 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 94.24 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 94.21 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 94.18 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 94.18 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 94.12 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 94.1 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 94.05 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 94.04 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 94.04 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 94.01 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 93.96 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 93.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 93.86 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 93.84 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 93.78 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 93.74 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 93.64 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 93.62 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 93.61 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 93.46 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 93.46 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 93.46 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 93.42 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 93.39 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 93.37 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 93.33 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 93.29 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 93.29 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 93.24 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 93.22 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 93.18 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 93.11 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 93.1 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 93.09 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 93.01 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 92.99 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 92.96 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 92.86 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 92.83 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 92.82 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 92.81 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 92.79 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 92.72 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 92.68 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 92.65 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 92.59 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 92.58 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 92.58 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 92.56 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 92.54 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 92.47 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 92.46 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 92.43 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 92.4 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 92.31 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 92.29 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 92.28 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 92.23 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 92.22 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 92.12 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 92.03 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 92.03 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 91.97 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 91.92 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 91.91 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 91.9 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 91.86 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 91.86 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 91.83 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 91.82 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 91.74 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 91.72 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 91.72 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 91.67 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 91.64 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 91.62 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 91.61 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 91.59 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 91.51 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 91.5 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 91.46 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 91.35 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 91.33 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 91.31 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 91.3 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 91.28 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 91.28 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 91.18 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 91.11 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 91.09 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 91.07 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 91.06 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 91.05 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 91.04 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 91.01 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 90.94 | |
| 2nvu_B | 805 | Maltose binding protein/NEDD8-activating enzyme E1 | 90.82 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 90.79 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 90.74 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 90.66 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 90.63 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 90.4 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 90.36 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 90.33 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 90.3 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 90.3 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 90.29 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 90.28 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 90.26 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 90.18 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 90.14 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 90.09 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 90.07 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 90.05 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 90.01 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 89.89 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 89.78 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 89.78 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 89.74 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 89.66 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 89.64 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 89.45 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 89.45 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 89.4 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 89.39 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 89.39 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 89.36 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 89.33 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 89.31 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 89.21 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 89.21 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 89.19 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 89.17 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 89.16 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 89.12 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 88.94 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 88.91 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 88.91 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 88.84 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 88.69 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 88.61 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 88.49 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 88.49 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 88.39 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 88.37 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 88.28 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 88.27 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 88.22 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 88.15 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 88.11 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 88.09 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 88.08 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 87.89 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 87.85 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 87.82 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 87.8 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 87.78 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 87.71 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 87.66 |
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-65 Score=525.89 Aligned_cols=334 Identities=20% Similarity=0.300 Sum_probs=281.2
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCC---CCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccch
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGY---LRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~---~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~ 116 (461)
..++.||+|||+|+||+|+|..|+++ |. ....++|++|.|+++... +.+.+.|+..+ +|++|||+
T Consensus 31 ~~~p~KI~ViGaGsWGTALA~~la~n-g~~~~~~~~~~V~lw~r~~e~~~----~~~~e~in~~~-------~N~~YLpg 98 (391)
T 4fgw_A 31 AEKPFKVTVIGSGNWGTTIAKVVAEN-CKGYPEVFAPIVQMWVFEEEING----EKLTEIINTRH-------QNVKYLPG 98 (391)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHH-HHHCTTTEEEEEEEECCCCBSSS----CBHHHHHTTTC-------CBTTTBTT
T ss_pred cCCCCeEEEECcCHHHHHHHHHHHHc-CCCccccCCceEEEEEcchHhhh----HHHHHHHHhcC-------cCcccCCC
Confidence 33567999999999999999999998 60 000025999999986432 23445566655 59999987
Q ss_pred hhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEE
Q 012547 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (461)
Q Consensus 117 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~ 196 (461)
++ || .++.+++|+++++++||+||++||+++++++++++.+++++ ++++|++
T Consensus 99 v~-------Lp------------------~~i~~t~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~---~~~iv~~ 150 (391)
T 4fgw_A 99 IT-------LP------------------DNLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDS---HVRAISC 150 (391)
T ss_dssp CC-------CC------------------SSEEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCT---TCEEEEC
T ss_pred Cc-------CC------------------CCcEEeCCHHHHHhcCCEEEEECChhhhHHHHHHhccccCC---CceeEEe
Confidence 62 32 26899999999999999999999999999999999999887 7899999
Q ss_pred eecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe-CCh---------hHHHHHHHHhcC
Q 012547 197 AKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAE---------KWRKPLAKFLRR 266 (461)
Q Consensus 197 tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~-~~~---------~~~~~l~~ll~~ 266 (461)
+||++..+ +..+++++++.+.++ .++++++|||||.|++.+.|+.++++ .+. ...+.++++|++
T Consensus 151 ~KGie~~~---~~~~~~se~i~e~~~---~~~~vLsGPs~A~EVa~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~ 224 (391)
T 4fgw_A 151 LKGFEVGA---KGVQLLSSYITEELG---IQCGALSGANIATEVAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHR 224 (391)
T ss_dssp CCSCEEET---TEEECHHHHHHHHHC---CEEEEEECSCCHHHHHTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCB
T ss_pred cccccccc---ccchhHHHHHHHHhC---ccceeccCCchHHHhhcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCC
Confidence 99998753 134789999999887 35789999999999999999987753 322 236889999999
Q ss_pred CCceEEecCChHHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHh---CCCchhhccC-hhhhhhh
Q 012547 267 PHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLL---AEEPEKLAGP-LLADTYV 339 (461)
Q Consensus 267 ~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~---G~~~~t~~g~-glgDl~~ 339 (461)
++|++|.++|++|+|+||++||||||++|+++| |+|++|++++++++||.+|+.++ |.++.||.++ |+|||++
T Consensus 225 ~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakAALitrGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~ 304 (391)
T 4fgw_A 225 PYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAIQRVGLGEIIRFGQMFFPESREETYYQESAGVADLIT 304 (391)
T ss_dssp TTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHH
T ss_pred CCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCceeecCCCcccceeE
Confidence 999999999999999999999999999999997 69999999999999999999999 4455567787 9999999
Q ss_pred hccccchhHHHHHHhc-CCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 340 TLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 340 T~~~sRN~~~G~~l~~-g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
||+.||||+||..|++ |++.+++++.+.+++++||+.|+++++++++++|+. .+ |||+++||+||+
T Consensus 305 Tc~sSRNr~~G~~lg~~G~~~~~~~~~~~~g~v~EGv~ta~~v~~l~~~~~v~------------~e-mPI~~~vy~IL~ 371 (391)
T 4fgw_A 305 TCAGGRNVKVARLMATSGKDAWECEKELLNGQSAQGLITCKEVHEWLETCGSV------------ED-FPLFEAVYQIVY 371 (391)
T ss_dssp HHHSSHHHHHHHHHHHTCCCHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHTCS------------TT-CHHHHHHHHHHH
T ss_pred EecCCccHHHHHHHHhcCCCHHHHHHHHhCCCEEehHHHHHHHHHHHHHcCCC------------CC-CCHHHHHHHHHh
Confidence 9988999999999996 899888887776667899999999999999999962 25 899999999999
Q ss_pred cCCCHHHHHHHHHhc
Q 012547 419 MRESPIQAILEALRD 433 (461)
Q Consensus 419 ~~~~~~~~~~~~l~~ 433 (461)
++.+|.+ +.++|++
T Consensus 372 ~~~~~~~-~~~~l~~ 385 (391)
T 4fgw_A 372 NNYPMKN-LPDMIEE 385 (391)
T ss_dssp SCCCSTT-HHHHHCC
T ss_pred CCCCHHH-HHHHHHh
Confidence 9997655 4455543
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-60 Score=484.79 Aligned_cols=322 Identities=22% Similarity=0.333 Sum_probs=287.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+|||+|||+|+||+++|..|+++ | ++|++|+|++++++.+++.+ .|+.|++++
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~~-G-----~~V~l~~r~~~~~~~i~~~~----------------~~~~~l~g~---- 81 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLARK-G-----QKVRLWSYESDHVDEMQAEG----------------VNNRYLPNY---- 81 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSCHHHHHHHHHHS----------------SBTTTBTTC----
T ss_pred cCCeEEEECccHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHcC----------------CCcccCCCC----
Confidence 358999999999999999999999 8 99999999988777543321 366777754
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.++ .++.+++|++++++++|+||+|||+++++++++++.+++++ ++++|+++||++
T Consensus 82 ---~l~------------------~~i~~t~d~~ea~~~aDvVilaVp~~~~~~vl~~i~~~l~~---~~ivvs~~kGi~ 137 (356)
T 3k96_A 82 ---PFP------------------ETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDA---KTRIAWGTKGLA 137 (356)
T ss_dssp ---CCC------------------TTEEEESCHHHHHTTCCEEEECCCHHHHHHHHHHHGGGCCT---TCEEEECCCSCB
T ss_pred ---ccC------------------CCeEEECCHHHHHhcCCEEEECCCHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 221 25788999999999999999999999999999999999987 789999999999
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (461)
+. + ..+++++++.++. .++++++||+++.|++.+.++.+++ +.+++..+.++++|++.+|++|.++|++|+
T Consensus 138 ~~-----t-~~~se~i~~~l~~--~~~~vlsgP~~a~ev~~g~pt~~via~~~~~~~~~v~~lf~~~~~rv~~~~Di~g~ 209 (356)
T 3k96_A 138 KG-----S-RLLHEVVATELGQ--VPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKNDDMIGV 209 (356)
T ss_dssp TT-----T-BCHHHHHHHHHCS--CCEEEEESSCCHHHHHTTCCEEEEEEESCHHHHHHHHHHHCCSSEEEEEESCHHHH
T ss_pred cC-----c-cCHHHHHHHHcCC--CCEEEEECccHHHHHHcCCCeEEEEecCCHHHHHHHHHHhCCCCeeEEEeCCHHHH
Confidence 87 5 8899999998873 4678999999999999999887765 567888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc--ccchhHHHHHHh
Q 012547 281 EVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELA 354 (461)
Q Consensus 281 e~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~ 354 (461)
||+|++||++|+++|++++ ++|+++++++++++||.+|++++|++++||+++ |+|||++||+ .||||++|.+|+
T Consensus 210 e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~~gl~g~gDl~~tc~s~~sRN~~~G~~l~ 289 (356)
T 3k96_A 210 ELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTGLAGLGDLVLTCTDNQSRNRRFGLALG 289 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHhhcccchhhHHHHhccCCCCccHHHHHHHH
Confidence 9999999999999999985 689999999999999999999999999999997 9999999995 599999999999
Q ss_pred cCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhcc
Q 012547 355 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDE 434 (461)
Q Consensus 355 ~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l~~~ 434 (461)
+|++.+++++.+ ++++||++|++.++++++++|+ + +||++++|+||+++++|.+++..||.|+
T Consensus 290 ~g~~~~~~~~~~--~~~~eG~~t~~~~~~la~~~~v--------------~-~Pi~~~v~~il~~~~~~~~~~~~l~~r~ 352 (356)
T 3k96_A 290 EGVDKKEAQQAI--GQAIEGLYNTDQVHALAQKHAI--------------E-MPLTFQVHRILHEDLDPQQAVQELLERS 352 (356)
T ss_dssp HTCCHHHHHHHH--CSCCSHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHHSCCCHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHc--CCccchHHHHHHHHHHHHHcCC--------------C-CcHHHHHHHHHhCCCCHHHHHHHHHcCC
Confidence 999998877665 4679999999999999999995 7 8999999999999999999999999999
Q ss_pred cCCC
Q 012547 435 TMND 438 (461)
Q Consensus 435 ~~~~ 438 (461)
.|.|
T Consensus 353 ~~~e 356 (356)
T 3k96_A 353 PKAE 356 (356)
T ss_dssp ----
T ss_pred CCCC
Confidence 9876
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-44 Score=365.67 Aligned_cols=340 Identities=22% Similarity=0.324 Sum_probs=277.1
Q ss_pred HHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCC--CeeEEEEecCch-----hhhhhhhhhHHHHHhhhhhhHH
Q 012547 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPGR-----SVDRATAEHLFEVINSREDVLR 105 (461)
Q Consensus 33 ~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~--~~~V~l~~r~~~-----~~~~~~~~~l~~~i~~~~~~~~ 105 (461)
|+++......+|||+|||+|+||+++|..|+++ |...+ .++|++|+|+++ +++.++ +.+
T Consensus 11 ~~~~~~~~~~~~kI~iIGaG~mG~alA~~L~~~-G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~---------~~~---- 76 (375)
T 1yj8_A 11 RNLFDKLKDGPLKISILGSGNWASAISKVVGTN-AKNNYLFENEVRMWIRDEFVNGERMVDIIN---------NKH---- 76 (375)
T ss_dssp CSHHHHHHHSCBCEEEECCSHHHHHHHHHHHHH-HHHCTTBCSCEEEECCSCC---CCHHHHHH---------HHC----
T ss_pred HHHHhcCccCCCEEEEECcCHHHHHHHHHHHHc-CCccCCCCCeEEEEECChhhhhHHHHHHHH---------hcC----
Confidence 444433333458999999999999999999988 51100 068999999987 554432 211
Q ss_pred hhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHH---
Q 012547 106 RLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR--- 182 (461)
Q Consensus 106 ~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~--- 182 (461)
.|..|+++. .++ .++.+++|++++++++|+||+|||+++++++++++.+
T Consensus 77 ---~~~~~~~~~-------~~~------------------~~i~~~~~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~ 128 (375)
T 1yj8_A 77 ---ENTKYLKGV-------PLP------------------HNIVAHSDLASVINDADLLIFIVPCQYLESVLASIKESES 128 (375)
T ss_dssp ---BCTTTSTTC-------BCC------------------TTEEEESSTHHHHTTCSEEEECCCHHHHHHHHHHHTC---
T ss_pred ---cccccCCcc-------cCc------------------CCeEEECCHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhh
Confidence 234455432 111 2577888998889999999999999999999999998
Q ss_pred -HhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHH
Q 012547 183 -YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPL 260 (461)
Q Consensus 183 -~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l 260 (461)
++++ ++++|+++||+++.. .+...+++.+.+.++ .++.+++||+++.++..+.++.++. +.+++..+.+
T Consensus 129 ~~l~~---~~ivvs~~~Gi~~~~---~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~v~~g~~~~~~~~~~~~~~~~~v 199 (375)
T 1yj8_A 129 IKIAS---HAKAISLTKGFIVKK---NQMKLCSNYISDFLN---IPCSALSGANIAMDVAMENFSEATIGGNDKDSLVIW 199 (375)
T ss_dssp CCCCT---TCEEEECCCSCEEET---TEEECHHHHHHHHSS---SCEEEEECSCCHHHHHTTCCEEEEEECSCHHHHHHH
T ss_pred ccCCC---CCEEEEeCCccccCC---ccccCHHHHHHHHcC---CCEEEEeCCchHHHHHhCCCeEEEEecCCHHHHHHH
Confidence 8876 789999999998730 034678888887765 3467899999999999988876665 4567788999
Q ss_pred HHHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHh--CCCchhhccC-hh
Q 012547 261 AKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLL--AEEPEKLAGP-LL 334 (461)
Q Consensus 261 ~~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~--G~~~~t~~g~-gl 334 (461)
+++|+..+++++.++|+.+++|++++||++++++|+..+ +.|...+++.++++|+..+++++ |.+++++.++ |+
T Consensus 200 ~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~ 279 (375)
T 1yj8_A 200 QRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEMILFGKVFFQKFNENILLESCGF 279 (375)
T ss_dssp HHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTH
T ss_pred HHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHhccCCCcchhhccccc
Confidence 999999999999999999999999999999999988764 46777789999999999999999 5899999886 99
Q ss_pred hhhhhhccccchhHHHHHHhc-C--CChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHH
Q 012547 335 ADTYVTLLKGRNAWYGQELAK-G--RLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILK 411 (461)
Q Consensus 335 gDl~~T~~~sRN~~~G~~l~~-g--~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~ 411 (461)
||++.||..|||+++|..+++ | .+.+|+.+.+.+++..||..++++++++++++|++ .+ +|+++
T Consensus 280 ~dl~~t~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~g~~~E~~~~~~~v~~~a~~~gv~------------~~-~P~~~ 346 (375)
T 1yj8_A 280 ADIITSFLAGRNAKCSAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIKEKNMT------------NE-FPLFT 346 (375)
T ss_dssp HHHHHHHSSSSHHHHHHHHHHHTTSSCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCG------------GG-CHHHH
T ss_pred cceeEeeeCCccHHHHHHHHhcCCCCCHHHHHHhhcCCcEeeHHHHHHHHHHHHHHhCCC------------CC-CCHHH
Confidence 999999988999999999998 8 67667665554566899999999999999999941 06 89999
Q ss_pred HHHHHHhcCCCHHHHHHHHHhcccC
Q 012547 412 MLYKILIMRESPIQAILEALRDETM 436 (461)
Q Consensus 412 ~ly~il~~~~~~~~~~~~~l~~~~~ 436 (461)
++|++++++.+|.+++..||.++.+
T Consensus 347 ~v~~~~~~~~~~~~~~~~l~~~~~~ 371 (375)
T 1yj8_A 347 VLHKISFENEDPSSLLKTFMNNKIN 371 (375)
T ss_dssp HHHHHHHSCCCTTHHHHHHSSCCCC
T ss_pred HHHHHHhCCCCHHHHHHHHHcCcHh
Confidence 9999999999999999999988654
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=337.58 Aligned_cols=329 Identities=22% Similarity=0.316 Sum_probs=269.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCC--CeeEEEEecCch-----hhhhhhhhhHHHHHhhhhhhHHhhhhcccccc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPGR-----SVDRATAEHLFEVINSREDVLRRLIRRCAYLK 115 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~--~~~V~l~~r~~~-----~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~ 115 (461)
+|||+|||+|+||+++|..|+++ |...+ .++|++|+|+++ +++.++ +.+ .+..|++
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~-g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~---------~~~-------~~~~~~~ 70 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGN-AAQLAQFDPRVTMWVFEEDIGGKKLTEIIN---------TQH-------ENVKYLP 70 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHH-HHHCTTEEEEEEEECCCCBSSSSBHHHHHH---------HHS-------CCTTTST
T ss_pred CCeEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEcChhhhhhHHHHHHH---------hcC-------cccccCC
Confidence 47999999999999999999988 41000 068999999987 444322 111 1223333
Q ss_pred hhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEE
Q 012547 116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (461)
Q Consensus 116 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs 195 (461)
+. .+ ..++.+++|++++++++|+||+|||+++++++++++.+++++ +++||+
T Consensus 71 ~~-------~~------------------~~~~~~~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~---~~ivv~ 122 (354)
T 1x0v_A 71 GH-------KL------------------PPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKA---NATGIS 122 (354)
T ss_dssp TC-------CC------------------CTTEEEESSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCT---TCEEEE
T ss_pred cc-------cC------------------ccCeEEEcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCC---CCEEEE
Confidence 21 11 024677889988899999999999999999999999998876 789999
Q ss_pred EeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEec
Q 012547 196 LAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDN 274 (461)
Q Consensus 196 ~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s 274 (461)
++||+..+. .+...+++.+.+.++ .+..+++||+++.++..+.++.++. +.+++..+.++++|+..+++++.+
T Consensus 123 ~~~Gi~~~~---~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~ 196 (354)
T 1x0v_A 123 LIKGVDEGP---NGLKLISEVIGERLG---IPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVV 196 (354)
T ss_dssp CCCCBCSSS---SSCCBHHHHHHHHHT---CCEEEEECSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEE
T ss_pred ECCccCCCC---CccccHHHHHHHHcC---CCEEEEECCCcHHHHHhcCCceEEEEECCHHHHHHHHHHhCCCCEEEEEc
Confidence 999998510 034667888887775 3467899999999999888766555 456778899999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCC---CchhhccC-hhhhhhhhccccchh
Q 012547 275 GDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAE---EPEKLAGP-LLADTYVTLLKGRNA 347 (461)
Q Consensus 275 ~Di~gve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~---~~~t~~g~-glgDl~~T~~~sRN~ 347 (461)
+|+.+++|++++||++++++|+..+ +.|...+++..+++|+.++++++|. +++++.++ |++|++.||..|||+
T Consensus 197 ~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~~~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~~~~~ 276 (354)
T 1x0v_A 197 QEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNR 276 (354)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGGGSTTTHHHHHHHHHHCHHH
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHHhhcccccH
Confidence 9999999999999999999988764 4677778899999999999999998 89999886 899999999889999
Q ss_pred HHHHHHhc-CCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHH
Q 012547 348 WYGQELAK-GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQA 426 (461)
Q Consensus 348 ~~G~~l~~-g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~ 426 (461)
++|..+++ |++.+++.+.+.+++..||...++.++++++++|+. .+ +|+++++|++++++++|.++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~g~v~~~a~~~gv~------------~~-~P~~~~v~~~~~~~~~~~~~ 343 (354)
T 1x0v_A 277 KVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLV------------DK-FPLFMAVYKVCYEGQPVGEF 343 (354)
T ss_dssp HHHHHHHHHCCCHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHTCG------------GG-SHHHHHHHHHHHSCCCGGGT
T ss_pred HHHHHHHhcCCCHHHHHHhhcCCcEeehHHHHHHHHHHHHHhCCC------------CC-CCHHHHHHHHHhCCCCHHHH
Confidence 99999987 888777665554566899999999999999999940 06 89999999999999999999
Q ss_pred HHHHHhccc
Q 012547 427 ILEALRDET 435 (461)
Q Consensus 427 ~~~~l~~~~ 435 (461)
+..||.++.
T Consensus 344 ~~~l~~~~~ 352 (354)
T 1x0v_A 344 IHCLQNHPE 352 (354)
T ss_dssp HHHHHTCCS
T ss_pred HHHHHcCCC
Confidence 999998754
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=337.07 Aligned_cols=316 Identities=24% Similarity=0.415 Sum_probs=258.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+|||+|||+|+||+++|..|+++ | ++|++|+|++++++.+++++ .|. |+++..
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~-G-----~~V~~~~r~~~~~~~l~~~g----------------~~~-~~~~~~--- 66 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHEN-G-----EEVILWARRKEIVDLINVSH----------------TSP-YVEESK--- 66 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHHHS----------------CBT-TBTTCC---
T ss_pred cCCcEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHHhC----------------Ccc-cCCCCe---
Confidence 458999999999999999999999 8 99999999988776543221 122 443210
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
. ++.+++|+++ ++++|+||+|||+++++++++++.+ + ++++|+++||++
T Consensus 67 -----------------------~-~~~~~~~~~~-~~~aDvVil~vk~~~~~~v~~~l~~---~---~~~vv~~~nGi~ 115 (335)
T 1z82_A 67 -----------------------I-TVRATNDLEE-IKKEDILVIAIPVQYIREHLLRLPV---K---PSMVLNLSKGIE 115 (335)
T ss_dssp -----------------------C-CSEEESCGGG-CCTTEEEEECSCGGGHHHHHTTCSS---C---CSEEEECCCCCC
T ss_pred -----------------------e-eEEEeCCHHH-hcCCCEEEEECCHHHHHHHHHHhCc---C---CCEEEEEeCCCC
Confidence 0 3567788888 8999999999999999999988876 4 689999999999
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHHHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (461)
+. +...+++.+.+.++ ....++.||+++.+++.|.++.+.+++.+ .+.++++|+..+++++.++|+++++
T Consensus 116 ~~-----~~~~l~~~~~~~~~---~~~~~~~~P~~~~~~~~g~~~~~~~g~~~--~~~~~~ll~~~g~~~~~~~di~~~~ 185 (335)
T 1z82_A 116 IK-----TGKRVSEIVEEILG---CPYAVLSGPSHAEEVAKKLPTAVTLAGEN--SKELQKRISTEYFRVYTCEDVVGVE 185 (335)
T ss_dssp TT-----TCCCHHHHHHHHTC---CCEEEEESSCCHHHHHTTCCEEEEEEETT--HHHHHHHHCCSSEEEEEESCHHHHH
T ss_pred CC-----ccCcHHHHHHHHcC---CceEEEECCccHHHHhCCCceEEEEEehh--HHHHHHHhCCCCEEEEecCchHHHH
Confidence 86 35678888877664 34678999999999999887665554433 7889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc--ccchhHHHHHHhc
Q 012547 282 VMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELAK 355 (461)
Q Consensus 282 ~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~~ 355 (461)
|++++||++++++|+..+ ++|...+++..++.|+..+++++|.+++++.++ +++|++.||. .+||+++|+++.+
T Consensus 186 ~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~l~~~~~~~~t~~s~~~~n~~~~~~~~~ 265 (335)
T 1z82_A 186 IAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIAR 265 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhcccccccceeeeccCccCcHHHHHHHHhC
Confidence 999999999998887653 467777889999999999999999999998886 8999999984 6999999999999
Q ss_pred CCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhccc
Q 012547 356 GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDET 435 (461)
Q Consensus 356 g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l~~~~ 435 (461)
|++.+++.+. .+.++||....+.++++++++|+ + +|+++++|++++++.+|.+++..||.++.
T Consensus 266 g~~~~~~~~~--~g~~~e~~~~~~~v~~~a~~~gv--------------~-~P~~~~v~~~~~~~~~~~~~~~~l~~~~~ 328 (335)
T 1z82_A 266 GFNPLKLLES--SNQVVEGAFTVKAVMKIAKENKI--------------D-MPISEEVYRVVYEGKPPLQSMRDLMRRSL 328 (335)
T ss_dssp TCCHHHHHHT--CSSCCTHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHHSCCCHHHHHHHHHC---
T ss_pred CCCHHHHHHh--cCCeeeHHHHHHHHHHHHHHhCC--------------C-CcHHHHHHHHHhCCCCHHHHHHHHHcCCc
Confidence 9887665532 24568999999999999999995 6 89999999999999999999999999999
Q ss_pred CCCccc
Q 012547 436 MNDPRD 441 (461)
Q Consensus 436 ~~~~~~ 441 (461)
|.|+++
T Consensus 329 ~~~~~~ 334 (335)
T 1z82_A 329 KDEFWA 334 (335)
T ss_dssp ------
T ss_pred cccccc
Confidence 998665
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=323.24 Aligned_cols=321 Identities=21% Similarity=0.357 Sum_probs=266.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (461)
||+|||+|+||+++|..|+++ | ++|++|+|++++++.+++.+ .+..|+++.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~-G-----~~V~~~~r~~~~~~~l~~~~----------------~~~~~~~~~------- 67 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKK-C-----REVCVWHMNEEEVRLVNEKR----------------ENVLFLKGV------- 67 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTT-E-----EEEEEECSCHHHHHHHHHHT----------------BCTTTSTTC-------
T ss_pred eEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHcC----------------ccccccccc-------
Confidence 999999999999999999998 8 99999999988776533211 123333321
Q ss_pred ccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHH----HHHHhhccCCCCEEEEEeecC
Q 012547 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEE----ISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~----i~~~l~~~~~~~iIIs~tkGi 200 (461)
.++ .++.+++|++++++++|+||+|||++++++++++ +.+++++. +++||+++||+
T Consensus 68 ~~~------------------~~~~~~~~~~~~~~~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~--~~ivv~~~~gi 127 (366)
T 1evy_A 68 QLA------------------SNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEK--QVPVLVCTKGI 127 (366)
T ss_dssp BCC------------------TTEEEESCHHHHHTTCSSEEECCCHHHHHHHHHHHCHHHHHHHHHH--TCCEEECCCSC
T ss_pred ccc------------------cceeeeCCHHHHHcCCCEEEECCChHHHHHHHHHhHHHHHHhcCcc--CCEEEEECCcC
Confidence 110 1467788998888999999999999999999999 99988741 26899999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCC--CceEEecCCh
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRP--HFTVWDNGDL 277 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~--g~~v~~s~Di 277 (461)
.+. +...+++.+.+.++. .+..++.||+++.++..+.++.+.. +.+.+..+.++++|+.. +++++.++|+
T Consensus 128 ~~~-----~~~~~~~~l~~~~~~--~~~~v~~gp~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~g~~~~~~~di 200 (366)
T 1evy_A 128 ERS-----TLKFPAEIIGEFLPS--PLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDT 200 (366)
T ss_dssp CTT-----TCCCHHHHHTTTSCG--GGEEEEESSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHSCTTSSEEEEEESCH
T ss_pred CCc-----cccCHHHHHHHHCCC--CcEEEEeCCChHHHHHhCCceEEEEecCCHHHHHHHHHHhcCCCCeEEEEEcCCc
Confidence 886 356677877776552 3567899999999998888776655 45667889999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc--ccchhHHHH
Q 012547 278 VTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQ 351 (461)
Q Consensus 278 ~gve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~ 351 (461)
.+++|++++||++++++|+..+ +.|...+++..++.|+..+++++|.+++++.++ +++|++.+|. .+||+++|+
T Consensus 201 ~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~Gi~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 280 (366)
T 1evy_A 201 VGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGK 280 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCCTTTTSTTTHHHHHHHHTCTTSHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHhCCCCccccccccchhheeeecCCCCchHHHHH
Confidence 9999999999999998887764 467777888999999999999999999888886 8999999884 679999999
Q ss_pred HHhcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 012547 352 ELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEAL 431 (461)
Q Consensus 352 ~l~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l 431 (461)
++.+|++.+++... .+..+|+...++.++++++++|+ + +|+++++|++++++.+|.+++..+|
T Consensus 281 ~~~~g~~~~~~~~~--~~~~~e~~~~~~~v~~~a~~~gv--------------~-~P~~~~v~~~~~~~~~~~~~~~~l~ 343 (366)
T 1evy_A 281 KLGKGLPIEEIQRT--SKAVAEGVATADPLMRLAKQLKV--------------K-MPLCHQIYEIVYKKKNPRDALADLL 343 (366)
T ss_dssp HHHTTCCHHHHHC-----CCCHHHHHHHHHHHHHHHHTC--------------C-CHHHHHHHHHHHSCCCHHHHHHHHG
T ss_pred HHhCCCCHHHHHHH--cCCeeehHHHHHHHHHHHHHhCC--------------C-CcHHHHHHHHHHCCCCHHHHHHHHH
Confidence 99999887655422 13468999999999999999995 6 8999999999999999999999999
Q ss_pred hcccCCC
Q 012547 432 RDETMND 438 (461)
Q Consensus 432 ~~~~~~~ 438 (461)
.++.|.|
T Consensus 344 ~~~~~~~ 350 (366)
T 1evy_A 344 SCGLQDE 350 (366)
T ss_dssp GGCSCCC
T ss_pred cCCcccc
Confidence 9999888
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=286.83 Aligned_cols=314 Identities=22% Similarity=0.334 Sum_probs=248.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec--CchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR--PGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
|||+|||+|+||+++|..|+++ | ++|++|+| ++++++.+++++ .+..+ +.
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~~~~----------------~~~~~--g~---- 52 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN-G-----NEVRIWGTEFDTEILKSISAGR----------------EHPRL--GV---- 52 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH-C-----CEEEEECCGGGHHHHHHHHTTC----------------CBTTT--TB----
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEEccCCHHHHHHHHHhC----------------cCccc--Cc----
Confidence 6999999999999999999999 8 99999999 877665432211 00111 10
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEec--CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVT--NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~--dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
. ..++.+++ +++++++++|+||+|||+++++++++++.+ +++ +++||+++||
T Consensus 53 ---~-------------------~~~~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~i~~-l~~---~~~vv~~~ng 106 (335)
T 1txg_A 53 ---K-------------------LNGVEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILP-YLK---DQYIVLISKG 106 (335)
T ss_dssp ---C-------------------CCSEEEECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHTT-TCC---SCEEEECCCS
T ss_pred ---c-------------------ccceEEecHHhHHHHHhcCCEEEEcCChHHHHHHHHHHhc-CCC---CCEEEEEcCc
Confidence 0 01346666 888888999999999999999999999999 876 6899999999
Q ss_pred C---ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe-CChhHHHHHHHHhcCCCceEEecC
Q 012547 200 V---EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 200 i---~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
+ .+. +...+++.+.+.++.. ...++++||+++.+++.+.++.++++ .+++..+.++++|+..+++++..+
T Consensus 107 ~~~~~~~-----~~~~l~~~~~~~~g~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~~ 180 (335)
T 1txg_A 107 LIDFDNS-----VLTVPEAVWRLKHDLR-ERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTT 180 (335)
T ss_dssp EEEETTE-----EEEHHHHHHTTSTTCG-GGEEEEESSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEES
T ss_pred CccCCCC-----cCccHHHHHHHhcCCC-CcEEEEECCCcHHHHHccCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEecC
Confidence 9 543 2233445444433321 24678999999999888876655554 457778999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhhccC---c-----cchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhccccch
Q 012547 276 DLVTHEVMGGLKNVYAIGAALTNE---S-----ATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRN 346 (461)
Q Consensus 276 Di~gve~~galKNv~Ai~~Gi~~g---~-----~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN 346 (461)
|+.+.+|+|+++|++++++|...+ + .|....++..+++|+..+++++|.+++++.++ +++|++.+|..+||
T Consensus 181 di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 260 (335)
T 1txg_A 181 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRGGRN 260 (335)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTCHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcchhhcccchhheeeccccCcc
Confidence 999999999999999888776543 3 56666788899999999999999999998886 89999999866899
Q ss_pred hHHHHHHhcCCChhhHhhhhcC-C-CccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHH
Q 012547 347 AWYGQELAKGRLTLDLGDSIKG-K-GMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPI 424 (461)
Q Consensus 347 ~~~G~~l~~g~~~~~~~~~~~~-~-~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~ 424 (461)
+++|..++.|.+..+....+.+ + ...|+......++++++++|+ + +|+++++|++++++.+|.
T Consensus 261 ~~~~~~~~~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a~~~gv--------------~-~P~~~~~~~~~~~~~~~~ 325 (335)
T 1txg_A 261 GMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINA--------------D-TKLLDSIYRVLYEGLKVE 325 (335)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHhCCCCHHHHHHHhccCCceecchHHHHHHHHHHHHHcCC--------------C-CcHHHHHHHHHhCCCCHH
Confidence 9999999888765332222110 1 468999999999999999995 7 899999999999999999
Q ss_pred HHHHHHHh
Q 012547 425 QAILEALR 432 (461)
Q Consensus 425 ~~~~~~l~ 432 (461)
+++..||.
T Consensus 326 ~~~~~l~~ 333 (335)
T 1txg_A 326 EVLFELAT 333 (335)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99998875
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=259.84 Aligned_cols=281 Identities=14% Similarity=0.122 Sum_probs=201.2
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
..+|||+|||+|+||+++|..|+++ | ++|++| +++++++.++++++ +.. .++.
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~-G-----~~V~l~-~~~~~~~~i~~~g~----------------~~~-~~~~--- 69 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARA-G-----HEVILI-ARPQHVQAIEATGL----------------RLE-TQSF--- 69 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHT-T-----CEEEEE-CCHHHHHHHHHHCE----------------EEE-CSSC---
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHC-C-----CeEEEE-EcHhHHHHHHhCCe----------------EEE-cCCC---
Confidence 4568999999999999999999999 8 999999 88877776443221 111 1111
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.++ .++.+++|+++ +.++|+||+|||+++++++++++.+++.+ +++||+++||+
T Consensus 70 ----~~~------------------~~~~~~~~~~~-~~~~D~vilavk~~~~~~~l~~l~~~l~~---~~~iv~~~nGi 123 (318)
T 3hwr_A 70 ----DEQ------------------VKVSASSDPSA-VQGADLVLFCVKSTDTQSAALAMKPALAK---SALVLSLQNGV 123 (318)
T ss_dssp ----EEE------------------ECCEEESCGGG-GTTCSEEEECCCGGGHHHHHHHHTTTSCT---TCEEEEECSSS
T ss_pred ----cEE------------------EeeeeeCCHHH-cCCCCEEEEEcccccHHHHHHHHHHhcCC---CCEEEEeCCCC
Confidence 110 14667788765 68999999999999999999999999987 78999999999
Q ss_pred ccccccccccCCHHHHHHhHhCCC-----CCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecC
Q 012547 201 EAELEAVPRIITPTQMINRATGVP-----IENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~-----~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
+.. +.+.+.++.+ ....++++||+++.+++.+.++ ++. .+..+.++++|++.+|+++.++
T Consensus 124 ~~~-----------~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~~~---ig~-~~~~~~l~~~l~~~~~~~~~~~ 188 (318)
T 3hwr_A 124 ENA-----------DTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGELV---IEP-TSHGANLAAIFAAAGVPVETSD 188 (318)
T ss_dssp SHH-----------HHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEEEE---ECC-CTTTHHHHHHHHHTTCCEEECS
T ss_pred CcH-----------HHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCceEE---EcC-CHHHHHHHHHHHhCCCCcEech
Confidence 875 3566666411 0123678999999998887533 333 4567889999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhhccC---c---cc-hHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhccccchhH
Q 012547 276 DLVTHEVMGGLKNVYAIGAALTNE---S---AT-SKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAW 348 (461)
Q Consensus 276 Di~gve~~galKNv~Ai~~Gi~~g---~---~n-~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~ 348 (461)
|+.+.+|.++++|+.....+...+ + .+ ....++.+++.|+..++++.|.+...- +-+.+. .
T Consensus 189 Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~----~~~~~~--------~ 256 (318)
T 3hwr_A 189 NVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEGVKLPDD----VALAIR--------R 256 (318)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTTCCCCTT----HHHHHH--------H
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcCCCCChH----HHHHHH--------H
Confidence 999999999999997665544332 1 11 233689999999999999999975321 111111 1
Q ss_pred HHHHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 349 YGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 349 ~G~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
+....+..++ +..+|..++++| +|-+++ +++++++++|+ + +|+++++|++++.
T Consensus 257 ~~~~~~~~~s-SM~qD~~~gr~tEid~i~G--~vv~~a~~~gv--------------~-tP~~~~l~~ll~~ 310 (318)
T 3hwr_A 257 IAETMPRQSS-STAQDLARGKRSEIDHLNG--LIVRRGDALGI--------------P-VPANRVLHALVRL 310 (318)
T ss_dssp HHHHSTTCCC-HHHHHHHTTCCCSGGGTHH--HHHHHHHHTTC--------------C-CHHHHHHHHHHHH
T ss_pred HHHhcCCCCc-HHHHHHHcCChhHHHHHHH--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 1111121222 222333344555 777777 99999999995 7 8999999999975
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-30 Score=256.30 Aligned_cols=278 Identities=16% Similarity=0.192 Sum_probs=199.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+++ | ++|++|+|++ .+.++++++ . .+..+..
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~-g-----~~V~~~~r~~--~~~i~~~Gl-------~-------~~~~~~g------- 52 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKT-G-----HCVSVVSRSD--YETVKAKGI-------R-------IRSATLG------- 52 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHT-T-----CEEEEECSTT--HHHHHHHCE-------E-------EEETTTC-------
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCh--HHHHHhCCc-------E-------EeecCCC-------
Confidence 48999999999999999999999 8 9999999986 244332211 0 0111111
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
+..+ .++.+++|++++.+++|+||+|||+++++++++++.+++.+ +++||+++||+++
T Consensus 53 ~~~~-------------------~~~~~~~~~~~~~~~~DlVilavK~~~~~~~l~~l~~~l~~---~t~Iv~~~nGi~~ 110 (320)
T 3i83_A 53 DYTF-------------------RPAAVVRSAAELETKPDCTLLCIKVVEGADRVGLLRDAVAP---DTGIVLISNGIDI 110 (320)
T ss_dssp CEEE-------------------CCSCEESCGGGCSSCCSEEEECCCCCTTCCHHHHHTTSCCT---TCEEEEECSSSSC
T ss_pred cEEE-------------------eeeeeECCHHHcCCCCCEEEEecCCCChHHHHHHHHhhcCC---CCEEEEeCCCCCh
Confidence 1111 13556788877666899999999999999999999999887 7899999999987
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchh-------HhhhccCceEEEEe----CChhHHHHHHHHhcCCCceE
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIA-------SEIYNKEYANARIC----GAEKWRKPLAKFLRRPHFTV 271 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a-------~ev~~g~~~~~~~~----~~~~~~~~l~~ll~~~g~~v 271 (461)
. +.+++.++. .+ +++||++. .++....+..+.++ .+.+..+.++++|++.+|++
T Consensus 111 ~-----------~~l~~~~~~--~~--vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~~~~~~~~~~~l~~~l~~~~~~~ 175 (320)
T 3i83_A 111 E-----------PEVAAAFPD--NE--VISGLAFIGVTRTAPGEIWHQAYGRLMLGNYPGGVSERVKTLAAAFEEAGIDG 175 (320)
T ss_dssp S-----------HHHHHHSTT--SC--EEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHHHTTSCE
T ss_pred H-----------HHHHHHCCC--Cc--EEEEEEEeceEEcCCCEEEECCCCEEEEecCCCCccHHHHHHHHHHHhCCCCc
Confidence 6 568888863 22 45666654 33333223333343 23567899999999999999
Q ss_pred EecCChHHHHHHHHHHHH----HHHHHhhccC--ccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhc--cc
Q 012547 272 WDNGDLVTHEVMGGLKNV----YAIGAALTNE--SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTL--LK 343 (461)
Q Consensus 272 ~~s~Di~gve~~galKNv----~Ai~~Gi~~g--~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~--~~ 343 (461)
+.++|+.+.+|+|+++|+ +++++|+.+| ..|....++++++.|+.++++++|.+... .+.|.+.++ ..
T Consensus 176 ~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~~va~a~G~~l~~----~~~~~~~~~~~~~ 251 (320)
T 3i83_A 176 IATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIRAVAAANGHPLPE----DIVEKNVASTYKM 251 (320)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHHHHHHHTTCCCCT----THHHHHHHHHHHS
T ss_pred eECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHhcC
Confidence 999999999999999975 6777777665 12323689999999999999999997532 234444444 24
Q ss_pred cchhH-HHHHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 344 GRNAW-YGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 344 sRN~~-~G~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
++|++ +-+++. +++++ +|.++. +++++++++|+ + +|+++++|++|+.
T Consensus 252 ~~~~sSM~qD~~------------~gr~tEid~i~G--~vv~~a~~~gv--------------~-~P~~~~l~~~l~~ 300 (320)
T 3i83_A 252 PPYKTSMLVDFE------------AGQPMETEVILG--NAVRAGRRTRV--------------A-IPHLESVYALMKL 300 (320)
T ss_dssp CCCCCHHHHHHH------------HTCCCCHHHHTH--HHHHHHHHTTC--------------C-CHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHH------------hCCCchHHHHcc--HHHHHHHHhCC--------------C-CCHHHHHHHHHHH
Confidence 45543 222232 33333 444444 99999999995 7 8999999999975
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-30 Score=255.44 Aligned_cols=282 Identities=18% Similarity=0.160 Sum_probs=198.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+++ | ++|++|+|++ .+.++++++ +..+.. +
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~-g-----~~V~~~~r~~--~~~i~~~g~----------------~~~~~~------g 51 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRS-G-----EDVHFLLRRD--YEAIAGNGL----------------KVFSIN------G 51 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHT-S-----CCEEEECSTT--HHHHHHTCE----------------EEEETT------C
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEEcCc--HHHHHhCCC----------------EEEcCC------C
Confidence 37999999999999999999999 8 9999999986 344322211 111110 1
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
+..+ .++.+++++++ +.++|+||+|||+++++++++++++++.+ +++||+++||+++
T Consensus 52 ~~~~-------------------~~~~~~~~~~~-~~~~D~vilavk~~~~~~~l~~l~~~l~~---~~~iv~l~nGi~~ 108 (312)
T 3hn2_A 52 DFTL-------------------PHVKGYRAPEE-IGPMDLVLVGLKTFANSRYEELIRPLVEE---GTQILTLQNGLGN 108 (312)
T ss_dssp CEEE-------------------SCCCEESCHHH-HCCCSEEEECCCGGGGGGHHHHHGGGCCT---TCEEEECCSSSSH
T ss_pred eEEE-------------------eeceeecCHHH-cCCCCEEEEecCCCCcHHHHHHHHhhcCC---CCEEEEecCCCCc
Confidence 1111 13556778765 68999999999999999999999999987 7899999999986
Q ss_pred ccccccccCCHHHHHHhHhCCCCC------cEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecC
Q 012547 203 ELEAVPRIITPTQMINRATGVPIE------NILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~------~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
. +.+++.++.... ..+.+.||+++.+.+.+...+... +.+.+..+.++++|++.+|+++.++
T Consensus 109 ~-----------~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 177 (312)
T 3hn2_A 109 E-----------EALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPRDTGRIEELAAMFRQAGVDCRTTD 177 (312)
T ss_dssp H-----------HHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCCCSHHHHHHHHHHHHTTCCEEECS
T ss_pred H-----------HHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCCccHHHHHHHHHHHhCCCCcEECh
Confidence 5 457777763110 113467899998876553222222 1235678999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHh-hcc---C---ccchHHHHHHHHHHHHHHHHHHhC--CCchhhccChhhhhhhhc--ccc
Q 012547 276 DLVTHEVMGGLKNVYAIGAA-LTN---E---SATSKSVYFAHCTSEMVFITHLLA--EEPEKLAGPLLADTYVTL--LKG 344 (461)
Q Consensus 276 Di~gve~~galKNv~Ai~~G-i~~---g---~~n~~a~l~~~~~~Em~~l~~a~G--~~~~t~~g~glgDl~~T~--~~s 344 (461)
|+.+++|.|+++|+...+.+ +.+ | .++....++++++.|+.++++++| .+.. ..+.|.+.++ ..+
T Consensus 178 di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~----~~~~~~~~~~~~~~~ 253 (312)
T 3hn2_A 178 DLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQGLATFIA----DGYVDDMLEFTDAMG 253 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSCCSSCCC----TTHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcCCccCCC----HHHHHHHHHHHhcCC
Confidence 99999999999999644433 222 2 133556899999999999999999 7543 1344555554 245
Q ss_pred chhH-HHHHHhcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcC
Q 012547 345 RNAW-YGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMR 420 (461)
Q Consensus 345 RN~~-~G~~l~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~ 420 (461)
+|++ +-+++. ++++ .|.-....+++++++++|+ + +|+++++|++|+..
T Consensus 254 ~~~sSM~qD~~------------~gr~-tEid~i~G~vv~~a~~~gv--------------~-~P~~~~l~~ll~~~ 302 (312)
T 3hn2_A 254 EYKPSMEIDRE------------EGRP-LEIAAIFRTPLAYGAREGI--------------A-MPRVEMLATLLEQA 302 (312)
T ss_dssp SCCCHHHHHHH------------TTCC-CCHHHHTHHHHHHHHHTTC--------------C-CHHHHHHHHHHHHH
T ss_pred CCCchHHHHHH------------hCCC-ccHHHHhhHHHHHHHHhCC--------------C-CCHHHHHHHHHHHH
Confidence 5653 222332 2333 3333334499999999995 7 89999999999763
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=247.88 Aligned_cols=289 Identities=16% Similarity=0.137 Sum_probs=201.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+++ | ++|++|+|+ +.++.+++.++ +.. .++.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~-g-----~~V~~~~r~-~~~~~~~~~g~----------------~~~-~~~~----- 53 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALA-G-----EAINVLARG-ATLQALQTAGL----------------RLT-EDGA----- 53 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHT-T-----CCEEEECCH-HHHHHHHHTCE----------------EEE-ETTE-----
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEEECh-HHHHHHHHCCC----------------EEe-cCCC-----
Confidence 48999999999999999999999 8 999999996 45554322211 110 0110
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.++ .++.+++|+++ +.++|+||+|||+++++++++++.+++.+ +++||+++||++.
T Consensus 54 --~~~------------------~~~~~~~~~~~-~~~~D~Vilavk~~~~~~~~~~l~~~l~~---~~~iv~~~nGi~~ 109 (335)
T 3ghy_A 54 --THT------------------LPVRATHDAAA-LGEQDVVIVAVKAPALESVAAGIAPLIGP---GTCVVVAMNGVPW 109 (335)
T ss_dssp --EEE------------------ECCEEESCHHH-HCCCSEEEECCCHHHHHHHHGGGSSSCCT---TCEEEECCSSSCT
T ss_pred --eEE------------------EeeeEECCHHH-cCCCCEEEEeCCchhHHHHHHHHHhhCCC---CCEEEEECCCCcc
Confidence 010 14667788876 58999999999999999999999999887 7899999999851
Q ss_pred cc-c--cccccC-----CHHHHHHhHhCCCCCcE--------EEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhc
Q 012547 203 EL-E--AVPRII-----TPTQMINRATGVPIENI--------LYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLR 265 (461)
Q Consensus 203 ~~-~--~~~~~~-----~~se~i~~~lg~~~~~v--------~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~ 265 (461)
.. . +..+.. ...+.+.+.++. .++ +.+.+|+++.+.+.+...+... +.+.+..+.++++|+
T Consensus 110 ~~~~~~g~~~~~~~~~~~~~~~l~~~~~~--~~v~~gv~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~ 187 (335)
T 3ghy_A 110 WFFDRPGPLQGQRLQAVDPHGRIAQAIPT--RHVLGCVVHLTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFG 187 (335)
T ss_dssp TTTCSSSTTTTCCCTTTCTTSHHHHHSCG--GGEEEEEECCCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHH
T ss_pred ccccccccccccccccCCcHHHHHHhcCc--ccEEEEEEEEEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHH
Confidence 10 0 000111 123467777763 222 5678999998876653222212 223567899999999
Q ss_pred CCCceEEecCChHHHHHHH----HHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhh
Q 012547 266 RPHFTVWDNGDLVTHEVMG----GLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTY 338 (461)
Q Consensus 266 ~~g~~v~~s~Di~gve~~g----alKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~ 338 (461)
+.+|+++.++|+.+..|.+ +.+|++++++|+.+| .++....+++++++|+.++++++|.++.... +..
T Consensus 188 ~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~-----~~~ 262 (335)
T 3ghy_A 188 RAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLVSAFCLAVMAEAKAIGARIGCPIEQSG-----EAR 262 (335)
T ss_dssp HTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHHHHHHHHHHHHHHHHHHTTTCCCCSCH-----HHH
T ss_pred hCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcChHHHHHHHHHHHHHHHHHHHcCCCCCccH-----HHH
Confidence 9999999999999998765 568999999998876 3556678999999999999999999764321 212
Q ss_pred hhc--cccchhHHHHHHhcCCChhhHhhhhcCC-Cc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHH
Q 012547 339 VTL--LKGRNAWYGQELAKGRLTLDLGDSIKGK-GM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLY 414 (461)
Q Consensus 339 ~T~--~~sRN~~~G~~l~~g~~~~~~~~~~~~~-~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly 414 (461)
.++ ..++|+ + +..+|..+++ ++ +|-++. +++++++++|+ + +|+++++|
T Consensus 263 ~~~~~~~~~~~----------s-SM~qD~~~gr~~tEid~i~G--~vv~~a~~~gv--------------~-~P~~~~l~ 314 (335)
T 3ghy_A 263 SAVTRQLGAFK----------T-SMLQDAEAGRGPLEIDALVA--SVREIGLHVGV--------------P-TPQIDTLL 314 (335)
T ss_dssp HHHHHTTCSCC----------C-TTTC-----CCCCCHHHHTH--HHHHHHHHHTC--------------C-CHHHHHHH
T ss_pred HHHHhccCCCC----------c-HHHHHHHcCCCCchHHHHhh--HHHHHHHHhCC--------------C-CCHHHHHH
Confidence 111 123333 2 1122222344 33 455544 99999999995 7 89999999
Q ss_pred HHHhc
Q 012547 415 KILIM 419 (461)
Q Consensus 415 ~il~~ 419 (461)
++++.
T Consensus 315 ~li~~ 319 (335)
T 3ghy_A 315 GLVRL 319 (335)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=236.60 Aligned_cols=271 Identities=13% Similarity=0.105 Sum_probs=188.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.. .. + +
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~---------~~----------~-----g------ 45 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQS-L-----PHTTLIGRHAKTITYY---------TV----------P-----H------ 45 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHH-C-----TTCEEEESSCEEEEEE---------SS----------T-----T------
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeccCcEEEE---------ec----------C-----C------
Confidence 47999999999999999999999 8 8999999997544310 00 0 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh-cCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av-~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.+ +..++.+..+++ .++|+||+|||+++++++++++.+++.+ +++||+++||++
T Consensus 46 --~~--------------------~~~~~~~~~~~~~~~~D~vilavk~~~~~~~l~~l~~~l~~---~~~iv~~~nGi~ 100 (294)
T 3g17_A 46 --AP--------------------AQDIVVKGYEDVTNTFDVIIIAVKTHQLDAVIPHLTYLAHE---DTLIILAQNGYG 100 (294)
T ss_dssp --SC--------------------CEEEEEEEGGGCCSCEEEEEECSCGGGHHHHGGGHHHHEEE---EEEEEECCSSCC
T ss_pred --ee--------------------ccceecCchHhcCCCCCEEEEeCCccCHHHHHHHHHHhhCC---CCEEEEeccCcc
Confidence 00 112223344444 7899999999999999999999999987 689999999999
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHHHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (461)
... . .+. .+.++......+.+.||+++. .. +..+.. ++.+..+.++++|++.+|+++.++|+.+.+
T Consensus 101 ~~~-----~-~~~---~~v~~g~~~~~a~~~~pg~v~-~~---~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~di~~~~ 166 (294)
T 3g17_A 101 QLE-----H-IPF---KNVCQAVVYISGQKKGDVVTH-FR---DYQLRI-QDNALTRQFRDLVQDSQIDIVLEANIQQAI 166 (294)
T ss_dssp CGG-----G-CCC---SCEEECEEEEEEEEETTEEEE-EE---EEEEEE-ECSHHHHHHHHHTTTSSCEEEEESSHHHHH
T ss_pred cHh-----h-CCC---CcEEEEEEEEEEEEcCCCEEE-EC---CCEEec-CccHHHHHHHHHHHhCCCceEEChHHHHHH
Confidence 862 0 000 011110001235688999873 22 222223 345678999999999999999999999999
Q ss_pred HHHHHHHH-HH--HHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhh-c-cccchhHHHHHH
Q 012547 282 VMGGLKNV-YA--IGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVT-L-LKGRNAWYGQEL 353 (461)
Q Consensus 282 ~~galKNv-~A--i~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T-~-~~sRN~~~G~~l 353 (461)
|.|+++|+ ++ .+.|...| .++....++++++.|+.+++++.|.+...- .+.+.+.. + ..+.|+
T Consensus 167 w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~---~~~~~~~~~~~~~~~~~------ 237 (294)
T 3g17_A 167 WYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQ---TVDTIMTIYQGYPDEMG------ 237 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHH---HHHHHHHHHHTSCTTCC------
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhhcCCCCC------
Confidence 99999999 34 33344333 245566899999999999999999975321 12222222 1 123333
Q ss_pred hcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 354 AKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
++..+|..++++| +|.+++ +++++++++|+ + +|+++++|++++.
T Consensus 238 -----sSM~qD~~~gr~tEid~i~G--~vv~~a~~~gv--------------~-~P~~~~l~~ll~~ 282 (294)
T 3g17_A 238 -----TSMYYDIVHQQPLEVEAIQG--FIYRRAREHNL--------------D-TPYLDTIYSFLRA 282 (294)
T ss_dssp -----CHHHHHHHTTCCCSGGGTHH--HHHHHHHHTTC--------------C-CHHHHHHHHHHHH
T ss_pred -----CcHHHHHHcCCCccHHHhhh--HHHHHHHHhCC--------------C-CChHHHHHHHHHH
Confidence 1122333344455 788877 99999999995 7 8999999999975
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=227.33 Aligned_cols=282 Identities=16% Similarity=0.147 Sum_probs=202.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+++ | ++|++|+|++++++.++++++ +..+.++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~r~~~~~~~~~~~g~----------------~~~~~~~------ 54 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG-G-----NDVTLIDQWPAHIEAIRKNGL----------------IADFNGE------ 54 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHCE----------------EEEETTE------
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHHHHhCCE----------------EEEeCCC------
Confidence 48999999999999999999999 8 999999999887765332210 0011100
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecC--HHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTN--LQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d--l~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.++ .++.++++ ..++++++|+||+|||++.++++++++.+++++ +++||+++||+
T Consensus 55 --~~~------------------~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~---~~~iv~~~~g~ 111 (316)
T 2ew2_A 55 --EVV------------------ANLPIFSPEEIDHQNEQVDLIIALTKAQQLDAMFKAIQPMITE---KTYVLCLLNGL 111 (316)
T ss_dssp --EEE------------------ECCCEECGGGCCTTSCCCSEEEECSCHHHHHHHHHHHGGGCCT---TCEEEECCSSS
T ss_pred --eeE------------------ecceeecchhhcccCCCCCEEEEEeccccHHHHHHHHHHhcCC---CCEEEEecCCC
Confidence 000 02333332 222334899999999999999999999999886 78999999998
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcE--------EEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceE
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENI--------LYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTV 271 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v--------~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v 271 (461)
... +.+.+.++. .++ +.+.||+++.+...|.+..+.. +.+++..+.++++|+..|+++
T Consensus 112 ~~~-----------~~l~~~~~~--~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~ 178 (316)
T 2ew2_A 112 GHE-----------DVLEKYVPK--ENILVGITMWTAGLEGPGRVKLLGDGEIELENIDPSGKKFALEVVDVFQKAGLNP 178 (316)
T ss_dssp CTH-----------HHHTTTSCG--GGEEEEEECCCCEEEETTEEEECSCCCEEEEESSGGGHHHHHHHHHHHHHTTCCE
T ss_pred CcH-----------HHHHHHcCC--ccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCCCccHHHHHHHHHHHhCCCCc
Confidence 753 345555542 111 2478999888777776554333 345677899999999999999
Q ss_pred EecCChHHHHHHHHHHHHHHHHHhhccC------ccchHH-HHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhcc--
Q 012547 272 WDNGDLVTHEVMGGLKNVYAIGAALTNE------SATSKS-VYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLL-- 342 (461)
Q Consensus 272 ~~s~Di~gve~~galKNv~Ai~~Gi~~g------~~n~~a-~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~-- 342 (461)
+..+|+.+.+|.++++|++..+.+...+ ..|..+ .++..++.|+..+++++|.++.. ..+.|++.+|.
T Consensus 179 ~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~~~G~~~~~---~~~~~~~~~~~~~ 255 (316)
T 2ew2_A 179 SYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEAIYLDQ---AEVYTHIVQTYDP 255 (316)
T ss_dssp EECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHHHTTCCCCH---HHHHHHHHHTTCT
T ss_pred EEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHHHcCCCCCh---HHHHHHHHHHhcc
Confidence 9999999999999999986544332221 134333 67889999999999999998621 14678777763
Q ss_pred c--cchhH-HHHHH-hcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 343 K--GRNAW-YGQEL-AKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 343 ~--sRN~~-~G~~l-~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
. ++|+. +.+++ .+|+ ..|.......++++++++|+ + +|+++++|++++
T Consensus 256 ~~~~~~~~sm~~d~~~~g~-------------~~E~~~~~~~~~~~a~~~gv--------------~-~P~~~~~~~~~~ 307 (316)
T 2ew2_A 256 NGIGLHYPSMYQDLIKNHR-------------LTEIDYINGAVWRKGQKYNV--------------A-TPFCAMLTQLVH 307 (316)
T ss_dssp TTTTTSCCHHHHHHTTTCC-------------CCSGGGTHHHHHHHHHHHTC--------------C-CHHHHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHcCC-------------cchHHHHhhHHHHHHHHhCC--------------C-CCHHHHHHHHHH
Confidence 3 67765 55555 4444 23455566789999999995 7 899999999997
Q ss_pred c
Q 012547 419 M 419 (461)
Q Consensus 419 ~ 419 (461)
.
T Consensus 308 ~ 308 (316)
T 2ew2_A 308 G 308 (316)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=215.63 Aligned_cols=278 Identities=16% Similarity=0.080 Sum_probs=185.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+ + | ++|++|+|+++++++++++++ +.. .++.
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~-g-----~~V~~~~r~~~~~~~l~~~G~----------------~~~-~~~~----- 52 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-L-Y-----HDVTVVTRRQEQAAAIQSEGI----------------RLY-KGGE----- 52 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-T-T-----SEEEEECSCHHHHHHHHHHCE----------------EEE-ETTE-----
T ss_pred CCEEEEECCCHHHHHHHHHHh-c-C-----CceEEEECCHHHHHHHHhCCc----------------eEe-cCCC-----
Confidence 489999999999999999999 8 8 999999999877665433221 000 0000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
..+ ..+..+. ++..++|+||+|||+++++++++++.++ .+ ++ ||+++||++.
T Consensus 53 --~~~------------------~~~~~~~---~~~~~~D~vilavK~~~~~~~l~~l~~~-~~---~~-ivs~~nGi~~ 104 (307)
T 3ego_A 53 --EFR------------------ADCSADT---SINSDFDLLVVTVKQHQLQSVFSSLERI-GK---TN-ILFLQNGMGH 104 (307)
T ss_dssp --EEE------------------ECCEEES---SCCSCCSEEEECCCGGGHHHHHHHTTSS-CC---CE-EEECCSSSHH
T ss_pred --eec------------------ccccccc---cccCCCCEEEEEeCHHHHHHHHHHhhcC-CC---Ce-EEEecCCccH
Confidence 000 0122222 2457899999999999999999999875 43 56 9999999987
Q ss_pred ccccccccCCHHHHHHhHhCCCC------CcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCC
Q 012547 203 ELEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~------~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
. +.+++.++... ...+.+.+|+...+.+.+...+....+..+..+.+.++|...++++..++|
T Consensus 105 ~-----------e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~l~~~l~~ag~~~~~~~d 173 (307)
T 3ego_A 105 I-----------HDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDDAEPDRLNILFQHNHSDFPIYYETD 173 (307)
T ss_dssp H-----------HHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECCCEEEEECTTCCGGGGTTTTSSCCTTSCEEECSC
T ss_pred H-----------HHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCCCcHHHHHHHHHhhhCCCCcEechh
Confidence 5 56777766321 112456788888776666543333323345667788899999999999999
Q ss_pred hHHHHHHHHHHHHH-HHHHhhcc---C--ccc-hHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhccccchhHH
Q 012547 277 LVTHEVMGGLKNVY-AIGAALTN---E--SAT-SKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWY 349 (461)
Q Consensus 277 i~gve~~galKNv~-Ai~~Gi~~---g--~~n-~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~ 349 (461)
+.+..|.+++.|+. .-.+.+.+ | ..+ ....++...+.|+..++++.+ ++.+ +..+...+
T Consensus 174 i~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~~~--~~~~----~~~~~~~~-------- 239 (307)
T 3ego_A 174 WYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILKLEN--EEKA----WERVQAVC-------- 239 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTCSC--HHHH----HHHHHHHH--------
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHHhccC--hHHH----HHHHHHHH--------
Confidence 99999999999983 33333332 3 112 223678899999999986431 2211 11111111
Q ss_pred HHHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCC
Q 012547 350 GQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRE 421 (461)
Q Consensus 350 G~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~ 421 (461)
......++ +..+|..++++| +|-+++ +++++++++|+ + +|+++++|++++.-+
T Consensus 240 -~~~~~~~s-SM~qD~~~gr~tEid~i~G--~vv~~a~~~gv--------------~-tP~~~~l~~li~~~e 293 (307)
T 3ego_A 240 -GQTKENRS-SMLVDVIGGRQTEADAIIG--YLLKEASLQGL--------------D-AVHLEFLYGSIKALE 293 (307)
T ss_dssp -HHTTTCCC-HHHHHHHHTCCCSHHHHHH--HHHHHHHHTTC--------------C-CHHHHHHHHHHHHTC
T ss_pred -HhcCCCCc-hHHHHHHcCCcccHHHhhh--HHHHHHHHcCC--------------C-CcHHHHHHHHHHHHH
Confidence 11111222 233333345555 778777 99999999995 7 899999999998644
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=213.56 Aligned_cols=286 Identities=14% Similarity=0.097 Sum_probs=187.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCC-eeEEEEecCchhhhhhhh-hhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDK-VLIRIWRRPGRSVDRATA-EHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~-~~V~l~~r~~~~~~~~~~-~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
.+|||+|||+|+||+++|..|+++ +....+ ++|++|+| +++++.+++ .++ +.....+
T Consensus 7 ~~m~I~iiG~G~mG~~~a~~L~~~-~~~~~g~~~V~~~~r-~~~~~~l~~~~g~----------------~~~~~~~--- 65 (317)
T 2qyt_A 7 QPIKIAVFGLGGVGGYYGAMLALR-AAATDGLLEVSWIAR-GAHLEAIRAAGGL----------------RVVTPSR--- 65 (317)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHH-HHHTTSSEEEEEECC-HHHHHHHHHHTSE----------------EEECSSC---
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-ccccCCCCCEEEEEc-HHHHHHHHhcCCe----------------EEEeCCC---
Confidence 458999999999999999999876 100002 78999999 666655332 110 0000000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
+ ... .++.++++.+ ++.++|+||+|||+++++++++++.+++.+ +++||+++||
T Consensus 66 ---~-~~~------------------~~~~~~~~~~-~~~~~D~vil~vk~~~~~~v~~~i~~~l~~---~~~iv~~~nG 119 (317)
T 2qyt_A 66 ---D-FLA------------------RPTCVTDNPA-EVGTVDYILFCTKDYDMERGVAEIRPMIGQ---NTKILPLLNG 119 (317)
T ss_dssp ---E-EEE------------------CCSEEESCHH-HHCCEEEEEECCSSSCHHHHHHHHGGGEEE---EEEEEECSCS
T ss_pred ---C-eEE------------------ecceEecCcc-ccCCCCEEEEecCcccHHHHHHHHHhhcCC---CCEEEEccCC
Confidence 0 000 1345666665 478999999999999999999999998886 6889999999
Q ss_pred CccccccccccCCHHHHHHhHhCCCC------CcEEEEeCcchhHhhhccCceEEEEeC-----ChhHHHHHHHHhcCCC
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICG-----AEKWRKPLAKFLRRPH 268 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~------~~v~vlsGPn~a~ev~~g~~~~~~~~~-----~~~~~~~l~~ll~~~g 268 (461)
+... +.+++.++... .-.+.++||+.+.+...+. ..+++. +.+.. .++++|+..|
T Consensus 120 ~~~~-----------~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~--~~~ig~~~~~~~~~~~-~~~~ll~~~g 185 (317)
T 2qyt_A 120 ADIA-----------ERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRE--LFYFGSGLPEQTDDEV-RLAELLTAAG 185 (317)
T ss_dssp SSHH-----------HHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEE--EEEEECCSSSCCHHHH-HHHHHHHHTT
T ss_pred CCcH-----------HHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCc--eEEEcCCCCCCcCHHH-HHHHHHHHCC
Confidence 8653 45666665311 0124567787766555442 221322 24556 8999999999
Q ss_pred ceEEecCChHHHHHHHHHHHHHHHHHhhccCccch-----HHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhcc-
Q 012547 269 FTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATS-----KSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLL- 342 (461)
Q Consensus 269 ~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~-----~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~- 342 (461)
++++..+|+.+.+|.++++|++..+.+...+..+. ...++.+++.|+..+++++|.++++. .+.|++.+|.
T Consensus 186 ~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~~~v~~a~G~~~~~~---~~~~~~~~~~~ 262 (317)
T 2qyt_A 186 IRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAELFRAKYGQVPDD---VVQQLLDKQRK 262 (317)
T ss_dssp CCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHHHHHHHHHTSCCCSS---HHHHHHHHHHH
T ss_pred CCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChH---HHHHHHHHHhc
Confidence 99999999999999999999875554433332111 23577889999999999999986432 4567776652
Q ss_pred -ccchhH-HHHHHhcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 343 -KGRNAW-YGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 343 -~sRN~~-~G~~l~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
.++|+. +.+++.+|+. .|.......++++++++|+ + +|+++.+|++++.
T Consensus 263 ~~~~~~~sm~~d~~~g~~-------------~E~~~~~g~~~~~a~~~gv--------------~-~P~~~~~~~~~~~ 313 (317)
T 2qyt_A 263 MPPESTSSMHSDFLQGGS-------------TEVETLTGYVVREAEALRV--------------D-LPMYKRMYRELVS 313 (317)
T ss_dssp C---------------------------------CTTTHHHHHHHHHTTC--------------C-CHHHHHHHHTTCC
T ss_pred cCCCCCChHHHHHHcCCc-------------cCHHHHhhHHHHHHHHcCC--------------C-CCHHHHHHHHHHH
Confidence 466664 3334433332 2222335589999999995 7 8999999999875
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=202.84 Aligned_cols=276 Identities=11% Similarity=0.091 Sum_probs=188.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|+++ | ++|++|+|++++++.++..+ ..+ .
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~r~~~~~~~l~~~~---------------------~~~------~ 47 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ-G-----HEVQGWLRVPQPYCSVNLVE---------------------TDG------S 47 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSEEEEEEEC---------------------TTS------C
T ss_pred CeEEEECcCHHHHHHHHHHHhC-C-----CCEEEEEcCccceeeEEEEc---------------------CCC------c
Confidence 7999999999999999999999 8 99999999987554321100 000 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.++ ..+. .++. ++++++|+||+|||+++++++++++.+++++ +++||+++||+...
T Consensus 48 -~~~------------------~~~~-~~~~-~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~---~~~vv~~~~g~~~~ 103 (291)
T 1ks9_A 48 -IFN------------------ESLT-ANDP-DFLATSDLLLVTLKAWQVSDAVKSLASTLPV---TTPILLIHNGMGTI 103 (291)
T ss_dssp -EEE------------------EEEE-ESCH-HHHHTCSEEEECSCGGGHHHHHHHHHTTSCT---TSCEEEECSSSCTT
T ss_pred -eee------------------eeee-ecCc-cccCCCCEEEEEecHHhHHHHHHHHHhhCCC---CCEEEEecCCCCcH
Confidence 000 0122 2444 5678999999999999999999999998876 68899999999654
Q ss_pred cccccccCCHHHHHHhHhCC--C--CCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 204 LEAVPRIITPTQMINRATGV--P--IENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~--~--~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
+.+.+.++. . ....+.+.|| .+.+...|...+...+++++..+.++++|+..|++++..+|+.+
T Consensus 104 -----------~~l~~~~~~~~~g~~~~~~~~~~p-~~~~~~~g~~~i~~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~~ 171 (291)
T 1ks9_A 104 -----------EELQNIQQPLLMGTTTHAARRDGN-VIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRA 171 (291)
T ss_dssp -----------GGGTTCCSCEEEEEECCEEEEETT-EEEEEECCCEEEEESSGGGTTCTHHHHHHHTTSSCEEECTTHHH
T ss_pred -----------HHHHHhcCCeEEEEEeEccEEcCC-EEEEecccceEEccCCCCcchHHHHHHHHHhcCCCCeecHHHHH
Confidence 123343331 0 0113468899 66666666533222233456678899999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHhhc---cCc-cchHHHHHHHHHHHHHHHHHHhCCCchhhcc--ChhhhhhhhccccchhHHHHH
Q 012547 280 HEVMGGLKNVY-AIGAALT---NES-ATSKSVYFAHCTSEMVFITHLLAEEPEKLAG--PLLADTYVTLLKGRNAWYGQE 352 (461)
Q Consensus 280 ve~~galKNv~-Ai~~Gi~---~g~-~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g--~glgDl~~T~~~sRN~~~G~~ 352 (461)
..|.+++.|.. ...+++. ++. .+ ...++..++.|+..+++++|.++. ... ..+.|++.+|...+.+.+ ++
T Consensus 172 ~~~~Kl~~n~~~n~~tal~~~~~g~~~~-~~~~~~~~~~E~~~va~a~G~~~~-~~~~~~~~~~~~~~~~~~~ssm~-~d 248 (291)
T 1ks9_A 172 ELWRKLAVNCVINPLTAIWNCPNGELRH-HPQEIMQICEEVAAVIEREGHHTS-AEDLRDYVMQVIDATAENISSML-QD 248 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGGGG-CHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHTTTCCCHHH-HH
T ss_pred HHHHHHeeeeeecHHHHHHCCCchHHHh-HHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCCCCChHH-HH
Confidence 99988877763 2223333 221 11 236788999999999999999752 112 156777776643333333 56
Q ss_pred HhcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 353 LAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 353 l~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
+.+|+.. ++. .+.| .++++++++|+ + +|+++++|+++..
T Consensus 249 ~~~g~~~-e~~-------~~~g-----~~~~~a~~~gv--------------~-~P~~~~~~~~~~~ 287 (291)
T 1ks9_A 249 IRALRHT-EID-------YING-----FLLRRARAHGI--------------A-VPENTRLFEMVKR 287 (291)
T ss_dssp HHTTCCC-SGG-------GTHH-----HHHHHHHHHTC--------------C-CHHHHHHHHHHHH
T ss_pred HHcCCcc-HHH-------HHHH-----HHHHHHHHhCC--------------C-CCHHHHHHHHHHH
Confidence 6666653 111 2344 69999999995 7 8999999999863
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=215.72 Aligned_cols=296 Identities=10% Similarity=0.134 Sum_probs=188.2
Q ss_pred CceEEEECccHHHHHHHHHHHH-hcCCCCCCeeEEEEe---cCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQD-SYGYLRDKVLIRIWR---RPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~-~~G~~~~~~~V~l~~---r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
+|||+|||+|+||+++|..|++ + | ++|++|+ |++++++. .+++++. ..+..+.++.
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~-G-----~~V~~~~~~~r~~~~~~~--------~~~~~g~-----~~~~~~~~~~- 61 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRD-G-----VEVRVLTLFADEAERWTK--------ALGADEL-----TVIVNEKDGT- 61 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTST-T-----EEEEEECCSTTHHHHHHH--------HHTTSCE-----EEEEECSSSC-
T ss_pred CceEEEECCCHHHHHHHHHHHhCC-C-----CEEEEEeCCCCcHHHHHH--------HHhhccc-----eeeeecCCCc-
Confidence 4899999999999999999987 6 7 9999999 66655443 1221110 0010111110
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeE-EecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEE-
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLK-VVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL- 196 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~-~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~- 196 (461)
...++ ..+. +++|++++++++|+||+|||++.++++++++.+++.+ +++|+++
T Consensus 62 ----~~~~~------------------~~~~~~~~~~~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~---~~ivv~~~ 116 (404)
T 3c7a_A 62 ----QTEVK------------------SRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQD---SALIVGLP 116 (404)
T ss_dssp ----EEEEE------------------ECCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCT---TCEEEETT
T ss_pred ----cceee------------------ccceEEeCCHHHHhCCCCEEEEeCchHHHHHHHHHHHhhCCC---CcEEEEcC
Confidence 00000 0233 7789988899999999999999999999999999887 6888884
Q ss_pred -eecCccccccccccCCHHHHHHhH-----h-CCCCCc-EEEEeCcchhHhhhccCce--EEEE-e--C-ChhHHHHHHH
Q 012547 197 -AKGVEAELEAVPRIITPTQMINRA-----T-GVPIEN-ILYLGGPNIASEIYNKEYA--NARI-C--G-AEKWRKPLAK 262 (461)
Q Consensus 197 -tkGi~~~~~~~~~~~~~se~i~~~-----l-g~~~~~-v~vlsGPn~a~ev~~g~~~--~~~~-~--~-~~~~~~~l~~ 262 (461)
++|++... .+.+.+. + +....+ .+.+.||+++.++..+... .... + . .++..+.+++
T Consensus 117 ~~~G~~~~~---------~~~l~~~~~~~v~~~~~~~~~~~~~~gpg~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 187 (404)
T 3c7a_A 117 SQAGFEFQC---------RDILGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAASLIKGTAKTVDPLSTLQML 187 (404)
T ss_dssp CCTTHHHHH---------HHHHGGGGGTSEEEEESSCSEEEEEEETTTEEEEEEECSEEEEEEECCSSCCSCHHHHHHHH
T ss_pred CCccHHHHH---------HHHHHhcCCCeEEEEecCchHhhcccCCCcEEEEEEECceEEEEEccCCcchHHHHHHHHHH
Confidence 45543220 1233321 1 100122 3667899977666544311 1122 2 1 2334555666
Q ss_pred HhcCCCceEEecCChHHHHHHH-HHHHHHHHHHhh-c-cC---------cc---chHHHHHHHHHHHHHHHHHHh-----
Q 012547 263 FLRRPHFTVWDNGDLVTHEVMG-GLKNVYAIGAAL-T-NE---------SA---TSKSVYFAHCTSEMVFITHLL----- 322 (461)
Q Consensus 263 ll~~~g~~v~~s~Di~gve~~g-alKNv~Ai~~Gi-~-~g---------~~---n~~a~l~~~~~~Em~~l~~a~----- 322 (461)
++..++ +..++|+++++|.+ +..|...+..++ . ++ .+ ...+.++.+++.|+.++++++
T Consensus 188 ~~~~~~--~~~~~di~~~~l~~N~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~E~~~va~a~~~~~~ 265 (404)
T 3c7a_A 188 HGAEPV--FRLAKHFLEMLIMSYSFVHPAILFGRWGSWDGKPVPEAPLFYQGIDQATADMLTACSNECKDVANAIMAACP 265 (404)
T ss_dssp HCSSSE--EEECSCHHHHHHTTCTTHHHHHHHHHHTTCCSCCBSSCCBSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hCCCCc--eeEcCCEeeeeecCCceeccHHHHHHHHhhhcCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 654332 44799999999984 445554444444 1 11 12 245688999999999999999
Q ss_pred CCCchhhccChhhhhhhhccccchhHHHHHHhcCCChhhHhh---------------------hhcCCCccchHH-HHHH
Q 012547 323 AEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGD---------------------SIKGKGMIQGIS-AVKA 380 (461)
Q Consensus 323 G~~~~t~~g~glgDl~~T~~~sRN~~~G~~l~~g~~~~~~~~---------------------~~~~~~~vEG~~-~~~~ 380 (461)
|.++.++ .+++|++.+|... .++.+.+..++.+ .++.+...||+. +..+
T Consensus 266 G~~~~~~--~~~~d~~~~~~~~-------~~~~~~s~~~~~~~~~~~~d~~~P~~~te~~~~~d~~~r~~~Edv~~~~~~ 336 (404)
T 3c7a_A 266 GNDLSDV--KDIYQWYLEYYHE-------DIQDDHDLYHAITTNKSYKGLVHPVKAVDGGVAPDFGNRYLTEDIPMGMIV 336 (404)
T ss_dssp TCCCTTC--CCHHHHHHHHSTT-------TBSCCSSHHHHHHTBGGGTTCBCCEEEETTEEEECCCSSTTTTTTTTTHHH
T ss_pred CCCcccC--CCHHHHHHHhCCC-------ccCChhhHHHHHHhhhhhccCCCCCCCcCCCccCCccccccccccccchHH
Confidence 9987665 4688988888321 1222222211111 123444689886 8889
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 381 FYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 381 v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
++++++++|+ + +|++++||++++
T Consensus 337 v~~la~~~gV--------------~-tP~~~~l~~l~~ 359 (404)
T 3c7a_A 337 FKGVAIAAGV--------------A-IPSNDKLIMWAQ 359 (404)
T ss_dssp HHHHHHHHTC--------------C-CHHHHHHHHHHH
T ss_pred HHHHHHHhCC--------------C-CchHHHHHHHHH
Confidence 9999999995 7 899999999986
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=220.31 Aligned_cols=289 Identities=13% Similarity=0.073 Sum_probs=202.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..|||+|||+|+||+++|..|+++ | ++|++|++++++++.+++ + .++.|.+++.
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~-G-----~~V~~~d~~~~~v~~l~~---------~--------~~~i~e~gl~--- 60 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADI-G-----HDVFCLDVDQAKIDILNN---------G--------GVPIHEPGLK--- 60 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHT---------T--------CCSSCCTTHH---
T ss_pred CCceEEEECcCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHC---------C--------CCCcCCCCHH---
Confidence 458999999999999999999999 8 999999999988776432 2 1344555432
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------hhHHHHHHHHHHHhhccCCCC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVP 191 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------~~~~~vl~~i~~~l~~~~~~~ 191 (461)
+++.+... ..++.+++|+++++++||+||+|||+ +++++++++|.+++++ ++
T Consensus 61 --------~~l~~~~~-------~~~l~~ttd~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~---~~ 122 (478)
T 2y0c_A 61 --------EVIARNRS-------AGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTG---FK 122 (478)
T ss_dssp --------HHHHHHHH-------TTCEEEECCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS---CE
T ss_pred --------HHHHHhcc-------cCCEEEECCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCC---CC
Confidence 11111000 02578999998889999999999998 8999999999999987 67
Q ss_pred EEEEEeecCccccccccccCCHHHHHHhHhCCCC--CcEEEEeCcchhHhhhc----cCceEEEEeCC-h----hHHHHH
Q 012547 192 VIISLAKGVEAELEAVPRIITPTQMINRATGVPI--ENILYLGGPNIASEIYN----KEYANARICGA-E----KWRKPL 260 (461)
Q Consensus 192 iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~--~~v~vlsGPn~a~ev~~----g~~~~~~~~~~-~----~~~~~l 260 (461)
+||..+ |+.+. +...+++.+.+.++.+. ..+.+.++|.++.+... +.+..+++++. + +..+.+
T Consensus 123 iVV~~S-Tv~~g-----t~~~l~~~l~~~~~~g~~~~~~~v~~~Pe~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~ 196 (478)
T 2y0c_A 123 VIVDKS-TVPVG-----TAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELM 196 (478)
T ss_dssp EEEECS-CCCTT-----HHHHHHHHHHHHHHHTTCCCCEEEEECCCCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHH
T ss_pred EEEEeC-CcCCC-----chHHHHHHHHHHhcCCCCCccEEEEEChhhhcccceeeccCCCCEEEEEECCCcccHHHHHHH
Confidence 776655 77665 33446666665432111 35678999999988664 45555566544 4 577889
Q ss_pred HHHhcCCCc---eEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhh
Q 012547 261 AKFLRRPHF---TVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADT 337 (461)
Q Consensus 261 ~~ll~~~g~---~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl 337 (461)
+++|+. .+ .++...|+.+.||.|.+-|.+ .++....++|+..+|+++|++++++.. +++
T Consensus 197 ~~l~~~-~~~~~~~~~~~di~~ae~~Kl~~N~~--------------~a~~ia~~nE~~~la~~~Gid~~~v~~-~i~-- 258 (478)
T 2y0c_A 197 KKLYAP-FNRNHERTLYMDVRSAEFTKYAANAM--------------LATRISFMNELANLADRFGADIEAVRR-GIG-- 258 (478)
T ss_dssp HHHTGG-GGSSSCCEEEECHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTTCCHHHHHH-HHH--
T ss_pred HHHHHH-HhccCCeEEcCCHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhCCCHHHHHH-HHh--
Confidence 999985 55 378889999999999888872 245557899999999999999987642 121
Q ss_pred hhhc--cccchhHHHHHHhcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHH
Q 012547 338 YVTL--LKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYK 415 (461)
Q Consensus 338 ~~T~--~~sRN~~~G~~l~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~ 415 (461)
+- ...++++.|..++. ..+ ....+++.++++++|+ + +|+++++++
T Consensus 259 --~~~rig~~~~~pG~g~gg-~c~---------------~kD~~~l~~~A~~~gv--------------~-~pl~~~v~~ 305 (478)
T 2y0c_A 259 --SDPRIGYHFLYAGCGYGG-SCF---------------PKDVEALIRTADEHGQ--------------S-LQILKAVSS 305 (478)
T ss_dssp --TSTTTCSTTCCCSSCCCS-SSH---------------HHHHHHHHHHHHHTTC--------------C-CHHHHHHHH
T ss_pred --cCCccCcccCCCCccccc-CcC---------------HHHHHHHHHHHHHcCC--------------C-cHHHHHHHH
Confidence 10 01224444432321 111 1125689999999995 6 899999999
Q ss_pred HHhcCCC-HHHHHHHHH
Q 012547 416 ILIMRES-PIQAILEAL 431 (461)
Q Consensus 416 il~~~~~-~~~~~~~~l 431 (461)
+...... ..+-+.+.|
T Consensus 306 in~~~~~~~~~~~~~~~ 322 (478)
T 2y0c_A 306 VNATQKRVLADKIVARF 322 (478)
T ss_dssp HHHHHTTHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHh
Confidence 9986432 334444444
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-22 Score=208.88 Aligned_cols=222 Identities=16% Similarity=0.124 Sum_probs=171.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.+|+|||+|+||+++|..|+++ | |+|++|+|++++++.++ ++ +++.|++++.
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~-G-----~~V~~~D~~~~kv~~l~---------~g--------~~~~~epgl~----- 60 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDF-G-----HEVVCVDKDARKIELLH---------QN--------VMPIYEPGLD----- 60 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCSTTHHHHT---------TT--------CCSSCCTTHH-----
T ss_pred eEEEEEcCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHh---------cC--------CCCccCCCHH-----
Confidence 5899999999999999999999 8 99999999999887643 32 3677877653
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-----------hHHHHHHHHHHHhhccCCCCE
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVPV 192 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-----------~~~~vl~~i~~~l~~~~~~~i 192 (461)
+++.+.+. ..++.+++|+++++++||+||+|||+. +++++++++.+++++ +++
T Consensus 61 ------~~~~~~~~-------~g~l~~ttd~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~---g~i 124 (446)
T 4a7p_A 61 ------ALVASNVK-------AGRLSFTTDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTK---PSV 124 (446)
T ss_dssp ------HHHHHHHH-------TTCEEEESCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCS---CCE
T ss_pred ------HHHHhhcc-------cCCEEEECCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCC---CCE
Confidence 22221110 025889999999999999999998754 599999999999887 677
Q ss_pred EEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhc----cCceEEEEeCC-hhHHHHHHHHhcCC
Q 012547 193 IISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGA-EKWRKPLAKFLRRP 267 (461)
Q Consensus 193 IIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~----g~~~~~~~~~~-~~~~~~l~~ll~~~ 267 (461)
||..+ ++++. +...+++.+.+..+. ..+.+.++|+++.++.. ..++.++++++ ++..+.++++|+..
T Consensus 125 VV~~S-Tv~pg-----tt~~l~~~l~e~~~~--~d~~v~~~Pe~a~eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~ 196 (446)
T 4a7p_A 125 IVTKS-TVPVG-----TGDEVERIIAEVAPN--SGAKVVSNPEFLREGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPL 196 (446)
T ss_dssp EEECS-CCCTT-----HHHHHHHHHHHHSTT--SCCEEEECCCCCCTTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSC
T ss_pred EEEeC-CCCch-----HHHHHHHHHHHhCCC--CCceEEeCcccccccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHH
Confidence 77765 88776 456677777765432 45788999999998775 55666666654 67789999999764
Q ss_pred Cce---EEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 268 HFT---VWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 268 g~~---v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
+-. ++...|+.+.|++|.+.|.+ .++....++|+..+|+++|++++++.+
T Consensus 197 ~~~~~~~~~~~d~~~aE~~Kl~~N~~--------------~a~~ia~~nE~~~l~~~~GiD~~~v~~ 249 (446)
T 4a7p_A 197 SLNQSAPVLFTGRRTSELIKYAANAF--------------LAVKITFINEIADLCEQVGADVQEVSR 249 (446)
T ss_dssp C-----CEEEECHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hcCCCeEEEeCCHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 332 47788999999998888772 345567899999999999999988764
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=204.65 Aligned_cols=224 Identities=13% Similarity=0.097 Sum_probs=168.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|+++ | ++|++|++++++++.++ ++ .++.|.+++.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~-G-----~~V~~~D~~~~~v~~l~---------~g--------~~~i~e~gl~----- 54 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL-G-----ANVRCIDTDRNKIEQLN---------SG--------TIPIYEPGLE----- 54 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHH---------HT--------CSCCCSTTHH-----
T ss_pred CEEEEECcCHHHHHHHHHHHhc-C-----CEEEEEECCHHHHHHHH---------cC--------CCcccCCCHH-----
Confidence 8999999999999999999999 8 99999999998877533 22 2445555432
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch----------hHHHHHHHHHHHhhccCCCCEE
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~----------~~~~vl~~i~~~l~~~~~~~iI 193 (461)
+++.+... ..++.+++|+++++++||+||+|||+. +++++++++.+++++ +++|
T Consensus 55 ------~~l~~~~~-------~~~l~~t~d~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~---g~iV 118 (450)
T 3gg2_A 55 ------KMIARNVK-------AGRLRFGTEIEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSR---YILI 118 (450)
T ss_dssp ------HHHHHHHH-------TTSEEEESCHHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS---CEEE
T ss_pred ------HHHHhhcc-------cCcEEEECCHHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCC---CCEE
Confidence 11211000 025788999999999999999999987 899999999999987 6777
Q ss_pred EEEeecCccccccccccCCHHHHHHhHhCCC--CCcEEEEeCcchhHhhhc----cCceEEEEeC-ChhHHHHHHHHhcC
Q 012547 194 ISLAKGVEAELEAVPRIITPTQMINRATGVP--IENILYLGGPNIASEIYN----KEYANARICG-AEKWRKPLAKFLRR 266 (461)
Q Consensus 194 Is~tkGi~~~~~~~~~~~~~se~i~~~lg~~--~~~v~vlsGPn~a~ev~~----g~~~~~~~~~-~~~~~~~l~~ll~~ 266 (461)
|..+ ++.+. +...+++.+.+..+.. ...+.+.+||+++.+... ..++.+++++ +++..+.++++|+.
T Consensus 119 V~~S-Tv~pg-----t~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~ 192 (450)
T 3gg2_A 119 VTKS-TVPVG-----SYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKP 192 (450)
T ss_dssp EECS-CCCTT-----HHHHHHHHHHHHHHHTTCCCCEEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTT
T ss_pred EEee-eCCCc-----chHHHHHHHHHhccccCcCcceeEEechhhhcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHH
Confidence 7666 67665 3455666666643211 134788999999988765 4566566654 57788999999985
Q ss_pred CCc--eEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 267 PHF--TVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 267 ~g~--~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
-+- .++...|+.+.|+.|..-|. ..++...+++|+..+|+++|++++++.+
T Consensus 193 ~~~~~~~~~~~d~~~aE~~Kl~~N~--------------~~a~~ia~~nE~~~l~~~~Gid~~~v~~ 245 (450)
T 3gg2_A 193 MLLNNFRVLFMDIASAEMTKYAANA--------------MLATRISFMNDVANLCERVGADVSMVRL 245 (450)
T ss_dssp TCCSCCCEEEECHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HhcCCCeEEecCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 432 15678899999998877766 3356667999999999999999998865
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=193.41 Aligned_cols=292 Identities=16% Similarity=0.096 Sum_probs=195.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|+++ | ++|++|++++++++.+++ ++ .+.+.+++.
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~-G-----~~V~~~d~~~~~~~~l~~---------~~--------~~i~e~~l~----- 52 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR-G-----HEVIGVDVSSTKIDLINQ---------GK--------SPIVEPGLE----- 52 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHT---------TC--------CSSCCTTHH-----
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHhC---------CC--------CCcCCCCHH-----
Confidence 7999999999999999999999 8 999999999987775432 11 233433321
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh----------HHHHHHHHHHHhhccCCCCEE
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------TKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~----------~~~vl~~i~~~l~~~~~~~iI 193 (461)
+++..+... ..+.+++|+++++++||+||+|||+.. ++++++++.+++++...+++|
T Consensus 53 ------~~~~~~~~~-------g~l~~t~~~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iV 119 (436)
T 1mv8_A 53 ------ALLQQGRQT-------GRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTV 119 (436)
T ss_dssp ------HHHHHHHHT-------TCEEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEE
T ss_pred ------HHHHhhccc-------CceEEeCCHHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEE
Confidence 111110000 147888999988999999999999765 999999999988750002566
Q ss_pred EEEeecCccccccccccCCHHHHHHhHhCCCC-CcEEEEeCcchhHhhhc----cCceEEEEeC-ChhHHHHHHHHhcCC
Q 012547 194 ISLAKGVEAELEAVPRIITPTQMINRATGVPI-ENILYLGGPNIASEIYN----KEYANARICG-AEKWRKPLAKFLRRP 267 (461)
Q Consensus 194 Is~tkGi~~~~~~~~~~~~~se~i~~~lg~~~-~~v~vlsGPn~a~ev~~----g~~~~~~~~~-~~~~~~~l~~ll~~~ 267 (461)
|..+ ++.+.. +...+.+.+.+..+... ..+.+..+|.++.+... ..+..++++. +++..+.++++|+..
T Consensus 120 V~~S-tv~~g~----t~~~l~~~l~~~~g~~~~~~~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~ 194 (436)
T 1mv8_A 120 VVRS-TVLPGT----VNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYREL 194 (436)
T ss_dssp EECS-CCCTTH----HHHTHHHHHHHHHSCCBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTS
T ss_pred EEeC-CcCCCc----hHHHHHHHHHHhcCcccCCcEEEEECcccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhcc
Confidence 6443 554441 13445566655434211 23567789998776443 2333345544 477788999999998
Q ss_pred CceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhccc--c
Q 012547 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLK--G 344 (461)
Q Consensus 268 g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~~--s 344 (461)
+.+++. .|+...||.+.+-|.+ .++....++|+..+|+++|.+++++... +...- .. +
T Consensus 195 ~~~v~~-~~~~~ae~~Kl~~N~~--------------~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~r----~~~~~ 255 (436)
T 1mv8_A 195 DAPIIR-KTVEVAEMIKYTCNVW--------------HAAKVTFANEIGNIAKAVGVDGREVMDVICQDHK----LNLSR 255 (436)
T ss_dssp SSCEEE-EEHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTT----TTTSS
T ss_pred CCCEEc-CCHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCC----CCCcc
Confidence 888777 8898999999888772 1344568899999999999998876542 22100 12 4
Q ss_pred chhHHHHHHhcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHH
Q 012547 345 RNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPI 424 (461)
Q Consensus 345 RN~~~G~~l~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~ 424 (461)
|++..|..++.+.... ...++.++++++|+ + +|++++++++ + +..|.
T Consensus 256 ~~~~pg~g~gg~~~~k----------------D~~~l~~~a~~~g~--------------~-~pl~~~v~~i-n-~~~~~ 302 (436)
T 1mv8_A 256 YYMRPGFAFGGSCLPK----------------DVRALTYRASQLDV--------------E-HPMLGSLMRS-N-SNQVQ 302 (436)
T ss_dssp TTCSCCSCCCSSSHHH----------------HHHHHHHHHHHTTC--------------C-CTTGGGHHHH-H-HHHHH
T ss_pred cCCCCcccccCcCcHh----------------hHHHHHHHHHHcCC--------------C-cHHHHHHHHH-H-hHhHH
Confidence 5555544332211111 13578999999995 6 8999999999 3 34466
Q ss_pred HHHHHHHhc
Q 012547 425 QAILEALRD 433 (461)
Q Consensus 425 ~~~~~~l~~ 433 (461)
..+.+++..
T Consensus 303 ~~~~~~~~~ 311 (436)
T 1mv8_A 303 KAFDLITSH 311 (436)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHHh
Confidence 666666554
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-19 Score=174.50 Aligned_cols=260 Identities=13% Similarity=0.042 Sum_probs=175.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
||||+|||+|+||+++|..|+++ | ++|++|+|++++++.+.+
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~~~~-------------------------------- 42 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRA-G-----FDVTVWNRNPAKCAPLVA-------------------------------- 42 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHH-T-----CCEEEECSSGGGGHHHHH--------------------------------
T ss_pred CCeEEEEccCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH--------------------------------
Confidence 47899999999999999999999 8 999999999876653110
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH---HHHHHHhhccCCCCEEEEEee
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl---~~i~~~l~~~~~~~iIIs~tk 198 (461)
.++..+++++++++++|+||+|||+. .+++++ +++.+.+.+ ++++|.+++
T Consensus 43 -----------------------~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~---g~~vv~~st 96 (287)
T 3pdu_A 43 -----------------------LGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGG---GRGYIDMST 96 (287)
T ss_dssp -----------------------HTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCT---TCEEEECSC
T ss_pred -----------------------CCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccC---CCEEEECCC
Confidence 02456678889999999999999985 899998 788887776 678887765
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHh--hhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCC
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~e--v~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
+ .+. +...+.+.+.+ .+ +.++.+|.+... ...+..+ ++++++++..+.++++|+..+.+++...+
T Consensus 97 ~-~~~-----~~~~~~~~~~~-~g-----~~~~~~pv~g~~~~a~~g~l~-~~~gg~~~~~~~~~~ll~~~g~~~~~~g~ 163 (287)
T 3pdu_A 97 V-DDE-----TSTAIGAAVTA-RG-----GRFLEAPVSGTKKPAEDGTLI-ILAAGDQSLFTDAGPAFAALGKKCLHLGE 163 (287)
T ss_dssp C-CHH-----HHHHHHHHHHH-TT-----CEEEECCEECCHHHHHHTCEE-EEEEECHHHHHHTHHHHHHHEEEEEECSS
T ss_pred C-CHH-----HHHHHHHHHHH-cC-----CEEEECCccCCHHHHhcCCEE-EEEeCCHHHHHHHHHHHHHhCCCEEEcCC
Confidence 3 332 11222233322 12 122333332211 1233322 34567788889999999988888888777
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhccccchhHHHHHHhc
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYGQELAK 355 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G~~l~~ 355 (461)
.-..++.+.+-|. ....+..+++|+..++++.|.+++++.+. +.+. ..+...+|+ +..+.+
T Consensus 164 ~g~~~~~Kl~~N~--------------~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~--~~s~~~~~~--~~~~~~ 225 (287)
T 3pdu_A 164 VGQGARMKLVVNM--------------IMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGA--MANPMFKGK--GQMLLS 225 (287)
T ss_dssp TTHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST--TCCHHHHHH--HHHHHH
T ss_pred CChHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc--ccChHHHhh--cccccc
Confidence 6556676666665 22445568899999999999999988653 2211 011122333 344443
Q ss_pred CCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 356 GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 356 g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
+... .+...-.+....+.+.+++++.|+ + +|+++.+++++..
T Consensus 226 ~~~~-------~~~~~~~~~kd~~~~~~~a~~~g~--------------~-~p~~~~~~~~~~~ 267 (287)
T 3pdu_A 226 GEFP-------TSFPLKHMQKDLRLAVELGDRLGQ--------------P-LHGAATANESFKR 267 (287)
T ss_dssp TCCC-------CSSBHHHHHHHHHHHHHHHHHHTC--------------C-CHHHHHHHHHHHH
T ss_pred CCCC-------CCCcHHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHHH
Confidence 3210 111234677888899999999995 6 8999999988753
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=172.24 Aligned_cols=257 Identities=14% Similarity=0.099 Sum_probs=170.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.||+++|..|++. | ++|.+|+|++++++.+.+
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~~--------------------------------- 46 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVSDRNPEAIADVIA--------------------------------- 46 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH---------------------------------
T ss_pred ceEEEECchHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHH---------------------------------
Confidence 7999999999999999999998 8 899999999875543110
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHH---HHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF---EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl---~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.++..+++++++++++|+||+||| +..++.++ +++.+.+++ ++++|++++|
T Consensus 47 ----------------------~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~---~~~vv~~s~~ 101 (299)
T 1vpd_A 47 ----------------------AGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVLIDMSSI 101 (299)
T ss_dssp ----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCT---TCEEEECSCC
T ss_pred ----------------------CCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhcCCC---CCEEEECCCC
Confidence 023455678888889999999999 67788888 778888876 6889999888
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhh--ccCceEEEEeCChhHHHHHHHHhcCCCceEEecCCh
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~--~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
..... +.+.+.++.. .+.++..|-+..... .+. ..++++++++..+.++++|+..|++++...|.
T Consensus 102 ~~~~~----------~~l~~~~~~~--g~~~~~~pv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~g~~~~~~~~~ 168 (299)
T 1vpd_A 102 APLAS----------REISDALKAK--GVEMLDAPVSGGEPKAIDGT-LSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDI 168 (299)
T ss_dssp CHHHH----------HHHHHHHHTT--TCEEEECCEESHHHHHHHTC-EEEEEESCHHHHHHHHHHHHTTEEEEEEEEST
T ss_pred CHHHH----------HHHHHHHHHc--CCeEEEecCCCCHhHHhcCC-EEEEeCCCHHHHHHHHHHHHHHcCCeEEeCCc
Confidence 65321 2344444211 112222233211111 222 22345667788899999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhccccchhHHHHHHhcC
Q 012547 278 VTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYGQELAKG 356 (461)
Q Consensus 278 ~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G~~l~~g 356 (461)
....|.+.+-|. ...++..++.|+..++++.|.+++++.++ +.++. .+...+++.. ..+.+
T Consensus 169 ~~~~~~Kl~~n~--------------~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~--~s~~~~~~~~-~~l~~- 230 (299)
T 1vpd_A 169 GAGNVTKLANQV--------------IVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLA--GSTVLDAKAP-MVMDR- 230 (299)
T ss_dssp THHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTT--CCHHHHHHHH-HHHTT-
T ss_pred CHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC--CCHHHHHhhh-HhhcC-
Confidence 666777766664 23566789999999999999998877553 22111 0000011100 01110
Q ss_pred CChhhHhhhhcCCCccchH-HHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 357 RLTLDLGDSIKGKGMIQGI-SAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 357 ~~~~~~~~~~~~~~~vEG~-~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
....+.+++.. ...+.++++++++|+ + +|+++++|+++.
T Consensus 231 --------~~~~g~~~~~~~kd~~~~~~~a~~~gv--------------~-~p~~~~~~~~~~ 270 (299)
T 1vpd_A 231 --------NFKPGFRIDLHIKDLANALDTSHGVGA--------------Q-LPLTAAVMEMMQ 270 (299)
T ss_dssp --------CCCCSSBHHHHHHHHHHHHHHHHHHTC--------------C-CHHHHHHHHHHH
T ss_pred --------CCCCCCChHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 01111233332 356789999999995 6 899999999886
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-18 Score=169.00 Aligned_cols=261 Identities=11% Similarity=0.032 Sum_probs=177.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.||+++|..|+++ | ++|++|+|++++++.+.+
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~~~~--------------------------------- 42 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA-G-----CSVTIWNRSPEKAEELAA--------------------------------- 42 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSGGGGHHHHH---------------------------------
T ss_pred CEEEEEeecHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH---------------------------------
Confidence 7999999999999999999999 8 999999999876653110
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHH---HHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF---EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl---~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.++..+++++++++++|+||+||| +..+++++ +++.+.+++ ++++|.++ +
T Consensus 43 ----------------------~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~---~~~vi~~s-t 96 (287)
T 3pef_A 43 ----------------------LGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGE---GRGYVDMS-T 96 (287)
T ss_dssp ----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCT---TCEEEECS-C
T ss_pred ----------------------CCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCC---CCEEEeCC-C
Confidence 034566889999999999999999 57899999 888888876 67777764 4
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
+.+.. ...+.+.+.+ .+.......+..+|..+. .+.. .++++++++..+.++++|+..+.+++...+.-.
T Consensus 97 ~~~~~-----~~~~~~~~~~-~g~~~~~~pv~g~~~~a~---~g~l-~~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~ 166 (287)
T 3pef_A 97 VDPAT-----SQRIGVAVVA-KGGRFLEAPVSGSKKPAE---DGTL-IILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGK 166 (287)
T ss_dssp CCHHH-----HHHHHHHHHH-TTCEEEECCEECCHHHHH---HTCE-EEEEEECHHHHHHHHHHHHHHEEEEEECSSTTH
T ss_pred CCHHH-----HHHHHHHHHH-hCCEEEECCCcCCHHHHh---cCCE-EEEEeCCHHHHHHHHHHHHHhCCCeEEeCCCCH
Confidence 44431 2223333332 121100112344555543 2322 234567788889999999988888888777655
Q ss_pred HHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhccccchhHHHHHHhcCCC
Q 012547 280 HEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYGQELAKGRL 358 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G~~l~~g~~ 358 (461)
.++.+.+-|.+ ......+++|+..++++.|.+++++.+. +.+. ..+...+|+ +..+.++..
T Consensus 167 ~~~~Kl~~N~~--------------~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~--~~s~~~~~~--~~~~~~~~~ 228 (287)
T 3pef_A 167 GAEMKLVVNMV--------------MGGMMACFCEGLALGEKAGLATDAILDVIGAGA--MANPMFALK--GGLIRDRNF 228 (287)
T ss_dssp HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST--TCCHHHHHH--HHHHHTTCC
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc--cccHHHHHH--hhhhhcCCC
Confidence 67777666662 2344567899999999999999988653 2221 011122333 444444321
Q ss_pred hhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 359 TLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 359 ~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
. .+-..-.+....+.+.+++++.|+ + +|+++.+++++..
T Consensus 229 ~-------~~~~~~~~~kd~~~~~~~a~~~g~--------------~-~p~~~~~~~~~~~ 267 (287)
T 3pef_A 229 A-------PAFPLKHMQKDLRLAVALGDRVGQ--------------P-LVASAAANELFKG 267 (287)
T ss_dssp C-------CSSBHHHHHHHHHHHHHHHHHHTC--------------C-CHHHHHHHHHHHH
T ss_pred C-------CCCchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHHH
Confidence 0 011124667778899999999995 6 8999999988753
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-18 Score=172.44 Aligned_cols=287 Identities=14% Similarity=0.129 Sum_probs=170.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+++ | ++|++|+|++++++.+++++ . .++.+.. +.
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~~--------~----------~~~~~~~--~~ 57 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALK-G-----QSVLAWDIDAQRIKEIQDRG--------A----------IIAEGPG--LA 57 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHT--------S----------EEEESSS--CC
T ss_pred cCeEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHhcC--------C----------eEEeccc--cc
Confidence 38999999999999999999998 8 89999999987766532210 0 1111100 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCe-EEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
. ...+ .+++|+++++.++|+||+|||++..+++++++.+++++ +++||++ +|+.
T Consensus 58 ~---------------------~~~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~l~~~l~~---~~~vv~~-~~~~ 112 (359)
T 1bg6_A 58 G---------------------TAHPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISE---GQLIILN-PGAT 112 (359)
T ss_dssp E---------------------EECCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TCEEEES-SCCS
T ss_pred c---------------------ccccceecCCHHHHHhcCCEEEEeCCchHHHHHHHHHHHhCCC---CCEEEEc-CCCc
Confidence 0 0023 46788888889999999999999999999999998887 6778877 5643
Q ss_pred cccccccccCCHHHHHHhHh-------CCCCCcEE-EEeCcchhHhhh-ccCceEEEE-e-CChhHHHHHHHHhcCCCce
Q 012547 202 AELEAVPRIITPTQMINRAT-------GVPIENIL-YLGGPNIASEIY-NKEYANARI-C-GAEKWRKPLAKFLRRPHFT 270 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~l-------g~~~~~v~-vlsGPn~a~ev~-~g~~~~~~~-~-~~~~~~~~l~~ll~~~g~~ 270 (461)
... .. +.+.+.+.. +....+++ .+.||+++...+ .+...+... + .+++..+.++++|.. +
T Consensus 113 ~~~-----~~-~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~--~- 183 (359)
T 1bg6_A 113 GGA-----LE-FRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGSVLPQ--Y- 183 (359)
T ss_dssp SHH-----HH-HHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSCEEEEEESGGGHHHHHHHHTTTCTT--E-
T ss_pred hHH-----HH-HHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecceEEEeccccccHHHHHHHHHHhhh--c-
Confidence 321 11 223333311 00012333 346777665433 133222222 2 233456778888843 3
Q ss_pred EEecCChHHHHHHHHHHHHHHH--------HHhhc----cCc------cchHHHHHHHHHHHHHHHHHHhCCCchhhccC
Q 012547 271 VWDNGDLVTHEVMGGLKNVYAI--------GAALT----NES------ATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP 332 (461)
Q Consensus 271 v~~s~Di~gve~~galKNv~Ai--------~~Gi~----~g~------~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~ 332 (461)
..++|+ |.+++||+.++ .+|.. +.. .+..+.++.+++.|+..+++++|.+++++.+.
T Consensus 184 -~~~~di----~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~ 258 (359)
T 1bg6_A 184 -VAVENV----LHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEKVDAERIAIAKAFDLNVPSVCEW 258 (359)
T ss_dssp -EECSCH----HHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHH
T ss_pred -EEcCCh----HhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHH
Confidence 346775 78888886655 23332 111 22335788899999999999999988665431
Q ss_pred hhhhhhhhccccchhHHHHHHhcCCChhhHhhhhcCCCc-cchHHH-------HHHHHHHHHHcCCCCCCCCCCCCCCcc
Q 012547 333 LLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGM-IQGISA-------VKAFYELLSQSSLSVLHPEENKPVATV 404 (461)
Q Consensus 333 glgDl~~T~~~sRN~~~G~~l~~g~~~~~~~~~~~~~~~-vEG~~~-------~~~v~~l~~~~~l~~~~~~~~~~~~~v 404 (461)
+...... ...|. ..... ++ +...+ +. +++ +++... ...++++++++|+
T Consensus 259 -~~~~~~~--~~~~l---~~~~~-~~-sm~~d-~~-~~~e~~~~~~~~D~~~~~g~~~~~a~~~gv-------------- 314 (359)
T 1bg6_A 259 -YKESYGQ--SPATI---YEAVQ-GN-PAYRG-IA-GPINLNTRYFFEDVSTGLVPLSELGRAVNV-------------- 314 (359)
T ss_dssp -C---------CCSH---HHHHH-TC-GGGTT-CB-CCSSSCCHHHHHHHHTTHHHHHHHHHHTTC--------------
T ss_pred -HHHHhCC--CcccH---HHHHh-cc-hhhcC-CC-CCCCCCccceecCcCccHHHHHHHHHHcCC--------------
Confidence 0000000 01100 00000 00 00111 11 222 554332 2489999999995
Q ss_pred cCCcHHHHHHHHHhc
Q 012547 405 ELCPILKMLYKILIM 419 (461)
Q Consensus 405 ~~~Pi~~~ly~il~~ 419 (461)
+ +|+++++|+++..
T Consensus 315 ~-~P~~~~l~~~~~~ 328 (359)
T 1bg6_A 315 P-TPLIDAVLDLISS 328 (359)
T ss_dssp C-CHHHHHHHHHHHH
T ss_pred C-chHHHHHHHHHHH
Confidence 7 8999999998864
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-18 Score=170.49 Aligned_cols=259 Identities=12% Similarity=0.055 Sum_probs=166.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|++. | ++|.+|+|+++.++.+.+ .
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~~---------~---------------------- 72 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKM-G-----HTVTVWNRTAEKCDLFIQ---------E---------------------- 72 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSGGGGHHHHH---------T----------------------
T ss_pred CCeEEEEcccHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHH---------c----------------------
Confidence 48999999999999999999998 8 899999999876543110 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHHHHHH---HHhhccCCCCEEEEEee
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFEEIS---RYWKERITVPVIISLAK 198 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl~~i~---~~l~~~~~~~iIIs~tk 198 (461)
++..+++++++++++|+||+||| +..+++++.++. +.+.+ +++||++++
T Consensus 73 ------------------------g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~---~~~vv~~s~ 125 (316)
T 2uyy_A 73 ------------------------GARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRP---GKCYVDMST 125 (316)
T ss_dssp ------------------------TCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCT---TCEEEECSC
T ss_pred ------------------------CCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhHhhcCCC---CCEEEECCC
Confidence 23345677788889999999999 788999988754 55665 678888886
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchh--HhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCC
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIA--SEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a--~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
+.... .+.+.+.++.. ...++.+|.+. .....+... .+++++++..+.++++|+..|++++...|
T Consensus 126 ~~~~~----------~~~l~~~~~~~--~~~~v~~p~~g~~~~~~~g~~~-~~~~g~~~~~~~v~~ll~~~g~~~~~~~~ 192 (316)
T 2uyy_A 126 VDADT----------VTELAQVIVSR--GGRFLEAPVSGNQQLSNDGMLV-ILAAGDRGLYEDCSSCFQAMGKTSFFLGE 192 (316)
T ss_dssp CCHHH----------HHHHHHHHHHT--TCEEEECCEESCHHHHHHTCEE-EEEEECHHHHHHTHHHHHHHEEEEEECSS
T ss_pred CCHHH----------HHHHHHHHHHc--CCEEEEcCccCChhHHhhCCEE-EEeCCCHHHHHHHHHHHHHhcCCEEEeCC
Confidence 53221 12233333211 12334445442 223344322 23455677888999999999999988877
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhccccchhHHHHHHhc
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYGQELAK 355 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G~~l~~ 355 (461)
+....|.+.+.|.+ + ..+...+.|+..+++++|.+++++.+. ..++.-.. ..+++. ...+.+
T Consensus 193 ~~~~~~~K~~~n~~---~-----------~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~--~~~~~~-~~~l~~ 255 (316)
T 2uyy_A 193 VGNAAKMMLIVNMV---Q-----------GSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASI--FLDQKC-QNILQG 255 (316)
T ss_dssp TTHHHHHHHHHHHH---H-----------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCH--HHHHHH-HHHHHT
T ss_pred CCHHHHHHHHHHHH---H-----------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCH--HHHHhh-HHhhcC
Confidence 65555655554442 1 124568899999999999998876543 21110000 000110 011111
Q ss_pred CCChhhHhhhhcCCCccch-HHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 356 GRLTLDLGDSIKGKGMIQG-ISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 356 g~~~~~~~~~~~~~~~vEG-~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
....+.++|. ....+.++++++++|+ + +|+++++|+++..
T Consensus 256 ---------~~~~g~~~~~~~kd~~~~~~~a~~~gv--------------~-~p~~~~v~~~~~~ 296 (316)
T 2uyy_A 256 ---------NFKPDFYLKYIQKDLRLAIALGDAVNH--------------P-TPMAAAANEVYKR 296 (316)
T ss_dssp ---------CCCCSSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHHH
T ss_pred ---------CCCCCCcHHHHHHHHHHHHHHHHHhCC--------------C-ChHHHHHHHHHHH
Confidence 1111223443 5556789999999995 6 8999999998863
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-18 Score=168.59 Aligned_cols=263 Identities=11% Similarity=0.033 Sum_probs=170.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++|||+|||+|+||+++|..|+++ | ++|++|+|++++++.+.+. +
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~~~~~------------------------g----- 50 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRA-G-----LSTWGADLNPQACANLLAE------------------------G----- 50 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHT------------------------T-----
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHHc------------------------C-----
Confidence 458999999999999999999999 8 9999999998766532110 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH---HHHHHHhhccCCCCEEEEEe
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLA 197 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl---~~i~~~l~~~~~~~iIIs~t 197 (461)
...++++++++++++|+||+|||+ ..++.++ +++.+.+++ +++||.++
T Consensus 51 -------------------------~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~---g~ivv~~s 102 (303)
T 3g0o_A 51 -------------------------ACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKP---GSAVMVSS 102 (303)
T ss_dssp -------------------------CSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCT---TCEEEECS
T ss_pred -------------------------CccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCC---CCEEEecC
Confidence 012256777888999999999998 4788888 788888876 67888776
Q ss_pred ecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCC-
Q 012547 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD- 276 (461)
Q Consensus 198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D- 276 (461)
+. .+.. ...+.+.+.+ .|.......+..+|..+. .+.. .++++++++..+.++++|+..+.+++...+
T Consensus 103 t~-~~~~-----~~~~~~~~~~-~g~~~~~~pv~g~~~~a~---~g~l-~~~~gg~~~~~~~~~~ll~~~g~~~~~~~~~ 171 (303)
T 3g0o_A 103 TI-SSAD-----AQEIAAALTA-LNLNMLDAPVSGGAVKAA---QGEM-TVMASGSEAAFTRLKPVLDAVASNVYRISDT 171 (303)
T ss_dssp CC-CHHH-----HHHHHHHHHT-TTCEEEECCEESCHHHHH---TTCE-EEEEECCHHHHHHHHHHHHHHEEEEEEEESS
T ss_pred CC-CHHH-----HHHHHHHHHH-cCCeEEeCCCCCChhhhh---cCCe-EEEeCCCHHHHHHHHHHHHHHCCCEEECCCC
Confidence 43 3321 1112222222 121000011233444332 3322 234567788889999999988888776666
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhccccchhHHHHHHhc
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYGQELAK 355 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G~~l~~ 355 (461)
+-..++.+.+-|.+ .+....+++|+..++++.|.+++++.+. +.+ ...+...+|+. ..+.+
T Consensus 172 ~g~a~~~Kl~~N~~--------------~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~--~~~s~~~~~~~--~~~~~ 233 (303)
T 3g0o_A 172 PGAGSTVKIIHQLL--------------AGVHIAAAAEAMALAARAGIPLDVMYDVVTHA--AGNSWMFENRM--QHVVD 233 (303)
T ss_dssp TTHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTS--TTCCHHHHHHH--HHHHT
T ss_pred CcHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc--ccCCHHHHhhh--HHHhc
Confidence 66577777766652 2344568999999999999999887653 221 00011223332 23322
Q ss_pred CCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 356 GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 356 g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
+.-. .+-..-......+.+.+++++.|+ + +|+++.+++++.
T Consensus 234 ~~~~-------~~~~~~~~~kD~~~~~~~a~~~g~--------------~-~p~~~~~~~~~~ 274 (303)
T 3g0o_A 234 GDYT-------PRSAVDIFVKDLGLVADTAKALRF--------------P-LPLASTALNMFT 274 (303)
T ss_dssp TCCC-------CSSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHH
T ss_pred CCCC-------CCCchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 2100 011123566677789999999995 6 899999999885
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.8e-18 Score=168.64 Aligned_cols=266 Identities=13% Similarity=0.085 Sum_probs=176.4
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
.+..+|||+|||+|.||+++|..|+++ | ++|++|+|++++++.+.+
T Consensus 17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~-G-----~~V~~~dr~~~~~~~l~~---------------------------- 62 (310)
T 3doj_A 17 RGSHMMEVGFLGLGIMGKAMSMNLLKN-G-----FKVTVWNRTLSKCDELVE---------------------------- 62 (310)
T ss_dssp -CCCSCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSGGGGHHHHH----------------------------
T ss_pred ccccCCEEEEECccHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH----------------------------
Confidence 345578999999999999999999999 8 999999999876653110
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH---HHHHHHhhccCCCCEEE
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVII 194 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl---~~i~~~l~~~~~~~iII 194 (461)
.++..+++++++++++|+||+|||. ..+++++ +++.+.+.+ +++||
T Consensus 63 ---------------------------~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~---g~~vv 112 (310)
T 3doj_A 63 ---------------------------HGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICE---GKGYI 112 (310)
T ss_dssp ---------------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCT---TCEEE
T ss_pred ---------------------------CCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCC---CCEEE
Confidence 0345668889999999999999996 5888988 788887776 67888
Q ss_pred EEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEec
Q 012547 195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN 274 (461)
Q Consensus 195 s~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s 274 (461)
.++ ++.+. +...+.+.+.+ .|.......+..+|..+. .+.. .++++++++..+.++++|+..+.+++..
T Consensus 113 ~~s-t~~~~-----~~~~~~~~~~~-~g~~~v~~pv~g~~~~a~---~g~l-~i~~gg~~~~~~~~~~ll~~~g~~~~~~ 181 (310)
T 3doj_A 113 DMS-TVDAE-----TSLKINEAITG-KGGRFVEGPVSGSKKPAE---DGQL-IILAAGDKALFEESIPAFDVLGKRSFYL 181 (310)
T ss_dssp ECS-CCCHH-----HHHHHHHHHHH-TTCEEEECCEECCHHHHH---HTCE-EEEEEECHHHHHHHHHHHHHHEEEEEEC
T ss_pred ECC-CCCHH-----HHHHHHHHHHH-cCCEEEeCCCCCChhHHh---cCCe-EEEEcCCHHHHHHHHHHHHHhCCCEEEe
Confidence 766 44443 12222333332 121100111334444433 3332 2345667888899999999888888888
Q ss_pred CChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhccccchhHHHHHH
Q 012547 275 GDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYGQEL 353 (461)
Q Consensus 275 ~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G~~l 353 (461)
.++-..++.+.+-|.+ ......+++|+..++++.|.+++++.+. +.+.. .+...+| .|..+
T Consensus 182 g~~g~a~~~Kl~~N~~--------------~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~--~s~~~~~--~~~~~ 243 (310)
T 3doj_A 182 GQVGNGAKMKLIVNMI--------------MGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAM--TNPMFKG--KGPSM 243 (310)
T ss_dssp SSTTHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTT--CCHHHHH--HHHHH
T ss_pred CCcCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccc--ccHHHHH--Hhhhh
Confidence 7765567777666652 2334467899999999999999887653 22100 0001122 23334
Q ss_pred hcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 354 AKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
.++.-. .+-..-.+....+.+.+++++.|+ + +|+++.+++++..
T Consensus 244 ~~~~~~-------~~f~~~~~~KDl~~~~~~a~~~g~--------------~-~p~~~~~~~~~~~ 287 (310)
T 3doj_A 244 NKSSYP-------PAFPLKHQQKDMRLALALGDENAV--------------S-MPVAAAANEAFKK 287 (310)
T ss_dssp HTTCCC-------CSSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHHH
T ss_pred hcCCCC-------CCccHHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHHH
Confidence 332210 011123677788899999999995 6 8999999988753
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-18 Score=181.13 Aligned_cols=282 Identities=12% Similarity=0.061 Sum_probs=179.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|+++ | ++|.+|+|++++++.+.++ .+ +. +. +
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~-G-----~~V~v~dr~~~~~~~l~~~--------~g--------~~---~~-----~- 50 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK-G-----FKVAVFNRTYSKSEEFMKA--------NA--------SA---PF-----A- 50 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHHH--------TT--------TS---TT-----G-
T ss_pred CEEEEEChHHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHHh--------cC--------CC---CC-----C-
Confidence 7999999999999999999999 8 8999999998877653211 00 00 10 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc---CCCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~---~aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.++..++|+++++. ++|+||+|||+ +.++++++++.+++++ +++||++++|
T Consensus 51 ----------------------~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~~l~~~l~~---g~iIId~sng 105 (478)
T 1pgj_A 51 ----------------------GNLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEK---GDILVDTGNA 105 (478)
T ss_dssp ----------------------GGEEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCT---TCEEEECCCC
T ss_pred ----------------------CCeEEECCHHHHHhcccCCCEEEEecCChHHHHHHHHHHHhhCCC---CCEEEECCCC
Confidence 03566788888776 49999999999 4899999999999887 6899999999
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCc---EEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCce------
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIEN---ILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT------ 270 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~---v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~------ 270 (461)
..... +.+.+.+...... ..+..||..+ ..|. + ++++++++..+.++++|+..+.+
T Consensus 106 ~~~~~----------~~l~~~l~~~g~~~v~~pv~gg~~~a---~~g~-~-i~~gg~~~~~~~v~~ll~~~g~~~~dg~~ 170 (478)
T 1pgj_A 106 HFKDQ----------GRRAQQLEAAGLRFLGMGISGGEEGA---RKGP-A-FFPGGTLSVWEEIRPIVEAAAAKADDGRP 170 (478)
T ss_dssp CHHHH----------HHHHHHHHTTTCEEEEEEEESHHHHH---HHCC-E-EEEEECHHHHHHHHHHHHHHSCBCTTSCB
T ss_pred ChHHH----------HHHHHHHHHCCCeEEEeeccCCHHHH---hcCC-e-EeccCCHHHHHHHHHHHHHhcccccCCCe
Confidence 76541 2233333211111 1233334322 2333 3 34566777788899998876654
Q ss_pred -EEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-h----hhhhhhhcccc
Q 012547 271 -VWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-L----LADTYVTLLKG 344 (461)
Q Consensus 271 -v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-g----lgDl~~T~~~s 344 (461)
+....+.--..+.+.. .|....++.+++.|+..+++++|.+++++.+. . -|++ +....
T Consensus 171 ~v~~~g~~G~g~~~Kl~--------------~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~--~s~l~ 234 (478)
T 1pgj_A 171 CVTMNGSGGAGSCVKMY--------------HNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFL--KSYML 234 (478)
T ss_dssp SCCCCCSTTHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTT--CBHHH
T ss_pred eEEEeCCchHHHHHhhH--------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCc--CchHH
Confidence 2222221111222222 24344567789999999999999998876553 2 1211 11122
Q ss_pred chhHHHHHHh----cCCC-hhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHH-HH-HHH
Q 012547 345 RNAWYGQELA----KGRL-TLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKM-LY-KIL 417 (461)
Q Consensus 345 RN~~~G~~l~----~g~~-~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~-ly-~il 417 (461)
+++. ..+. .|.. .+.+.+.. + ..| |.+.++++++++|+ + +|+++. || +++
T Consensus 235 ~~~~--~~l~~~d~~G~~~ld~i~D~~--~--~kg--tg~~~~~~A~~~Gv--------------~-~Pi~~~av~~r~l 291 (478)
T 1pgj_A 235 DISI--AAARAKDKDGSYLTEHVMDRI--G--SKG--TGLWSAQEALEIGV--------------P-APSLNMAVVSRQF 291 (478)
T ss_dssp HHHH--HHHHCBCTTSSBGGGGBCCCC--C--CCS--HHHHHHHHHHHHTC--------------C-CHHHHHHHHHHHH
T ss_pred Hhhc--hhhhcCCCCChhHHHHHHHHh--c--Ccc--HHHHHHHHHHHhCC--------------C-ChHHHHHHHHHHH
Confidence 3322 1232 2321 21121111 0 112 45789999999995 7 899998 77 899
Q ss_pred hcCCCHHHHHHHHHhccc
Q 012547 418 IMRESPIQAILEALRDET 435 (461)
Q Consensus 418 ~~~~~~~~~~~~~l~~~~ 435 (461)
+..+++.+++.++|..+.
T Consensus 292 s~~~~~r~~~~~~l~~~~ 309 (478)
T 1pgj_A 292 TMYKTERQANASNAPGIT 309 (478)
T ss_dssp HHTHHHHHHHHHHSTTTT
T ss_pred hCCCCHHHHHHHhcCCCC
Confidence 999999999999887553
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=183.81 Aligned_cols=281 Identities=14% Similarity=0.034 Sum_probs=182.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+++|+|||+|+||++||..|+++ | ++|++|+|++++++.+.++ .++
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~-G-----~~V~v~~r~~~~~~~l~~~----------------------~~~------ 60 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESR-G-----YTVSIFNRSREKTEEVIAE----------------------NPG------ 60 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSHHHHHHHHHH----------------------STT------
T ss_pred CCeEEEEccHHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHhh----------------------CCC------
Confidence 36899999999999999999999 8 8999999998876642210 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC---CCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~---aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.++..++|+++++++ +|+||++||+ +.++++++++.+++++ +++||++++
T Consensus 61 -----------------------~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~l~~---g~iIId~s~ 114 (480)
T 2zyd_A 61 -----------------------KKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDK---GDIIIDGGN 114 (480)
T ss_dssp -----------------------SCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHHHHHHHGGGCCT---TCEEEECSC
T ss_pred -----------------------CCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHHhhcCC---CCEEEECCC
Confidence 035667888888876 9999999999 6899999999999887 689999999
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCce-------E
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT-------V 271 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~-------v 271 (461)
|..... ..+.+.+.+ .+.......+..||..+. .|. .++++++++..+.++++|+..+.+ +
T Consensus 115 g~~~~t------~~l~~~l~~-~g~~~v~~pv~gg~~~a~---~g~--~i~~gg~~~~~~~v~~ll~~~g~~~~dGe~~v 182 (480)
T 2zyd_A 115 TFFQDT------IRRNRELSA-EGFNFIGTGVSGGEEGAL---KGP--SIMPGGQKEAYELVAPILTKIAAVAEDGEPCV 182 (480)
T ss_dssp CCHHHH------HHHHHHHHH-TTCEEEEEEEESHHHHHH---HCC--EEEEESCHHHHHHHHHHHHHHSCBCTTSCBSB
T ss_pred CCHHHH------HHHHHHHHH-CCCCeeCCccccCHhHHh---cCC--eEEecCCHHHHHHHHHHHHHHhccccCCCceE
Confidence 986542 112333333 121111122333444432 343 345677788889999999866554 2
Q ss_pred EecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHH-hCCCchhhccC------h-hhhhhhhcc-
Q 012547 272 WDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHL-LAEEPEKLAGP------L-LADTYVTLL- 342 (461)
Q Consensus 272 ~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a-~G~~~~t~~g~------g-lgDl~~T~~- 342 (461)
....+.--..+.+ ++ .|.....+.+++.|+..++++ +|.+++++.++ | ++|+..+|.
T Consensus 183 ~~~g~~G~g~~~K-----------l~---~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~ 248 (480)
T 2zyd_A 183 TYIGADGAGHYVK-----------MV---HNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITK 248 (480)
T ss_dssp CCCBSTTHHHHHH-----------HH---HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHH
T ss_pred EEECCccHHHHHH-----------HH---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 2222211112222 22 354556777899999999999 79999887663 4 777888874
Q ss_pred -ccchhHHHHHHhcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHH--HHHHhc
Q 012547 343 -KGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKML--YKILIM 419 (461)
Q Consensus 343 -~sRN~~~G~~l~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~l--y~il~~ 419 (461)
..||+.+ ..|...+.+.+.. .+..+| +.+++.++++|+ + +|+++.. ++++..
T Consensus 249 ~~l~~~d~----~~~~~v~~i~D~~--~~k~tG----~~~~~~A~~~gv--------------~-~Pi~~~av~ar~~s~ 303 (480)
T 2zyd_A 249 DIFTKKDE----DGNYLVDVILDEA--ANKGTG----KWTSQSALDLGE--------------P-LSLITESVFARYISS 303 (480)
T ss_dssp HHHHCBCT----TSSBGGGGBCCCC--CCCSCT----THHHHHHHHHTC--------------C-CHHHHHHHHHHHHHT
T ss_pred HHHhcCCC----CCcchHHHHHHHh--cCchHH----HHHHHHHHHcCC--------------C-CchHHHHHHHHhhhc
Confidence 3344443 2233333232211 123345 357788999995 7 8999984 677777
Q ss_pred CCCHHHHHHHHHhcc
Q 012547 420 RESPIQAILEALRDE 434 (461)
Q Consensus 420 ~~~~~~~~~~~l~~~ 434 (461)
.++......+++..+
T Consensus 304 ~k~~R~~~~~~~~g~ 318 (480)
T 2zyd_A 304 LKDQRVAASKVLSGP 318 (480)
T ss_dssp CHHHHHHHHTTCCCC
T ss_pred chhhhHHhhcccCCC
Confidence 665555544455444
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-18 Score=170.85 Aligned_cols=275 Identities=13% Similarity=0.119 Sum_probs=166.1
Q ss_pred chhHHhhHHHHHhhcC-CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhh
Q 012547 23 GSLEERLDELRRLMGK-AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRE 101 (461)
Q Consensus 23 ~~~~~~~~~~~~~~~~-~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~ 101 (461)
+....+-.-+.+.+.. ...++|||+|||+|.||+++|..|++. | ++|++|+|++++++.+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~l~~----------- 72 (320)
T 4dll_A 10 GVDLGTENLYFQSMTVESDPYARKITFLGTGSMGLPMARRLCEA-G-----YALQVWNRTPARAASLAA----------- 72 (320)
T ss_dssp -------------------CCCSEEEEECCTTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHT-----------
T ss_pred cccccccccceechhhccccCCCEEEEECccHHHHHHHHHHHhC-C-----CeEEEEcCCHHHHHHHHH-----------
Confidence 4445544444444432 344568999999999999999999999 8 999999999876543110
Q ss_pred hhHHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH--
Q 012547 102 DVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-- 178 (461)
Q Consensus 102 ~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-- 178 (461)
.++..+++++++++++|+||+|||. ..+++++.
T Consensus 73 --------------------------------------------~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~ 108 (320)
T 4dll_A 73 --------------------------------------------LGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ 108 (320)
T ss_dssp --------------------------------------------TTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT
T ss_pred --------------------------------------------CCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch
Confidence 0345678899999999999999995 68888887
Q ss_pred HHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhh--ccCceEEEEeCChhH
Q 012547 179 EISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKW 256 (461)
Q Consensus 179 ~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~--~g~~~~~~~~~~~~~ 256 (461)
.+.+.+.+ +++||.++.+ .+. +...+.+.+.+ .+ +.++..|-+..+.. .+.. .++++++++.
T Consensus 109 ~~~~~l~~---~~~vi~~st~-~~~-----~~~~~~~~~~~-~g-----~~~~~~pv~g~~~~a~~g~l-~i~~gg~~~~ 172 (320)
T 4dll_A 109 GVAAAMKP---GSLFLDMASI-TPR-----EARDHAARLGA-LG-----IAHLDTPVSGGTVGAEQGTL-VIMAGGKPAD 172 (320)
T ss_dssp CHHHHCCT---TCEEEECSCC-CHH-----HHHHHHHHHHH-TT-----CEEEECCEECHHHHHHHTCE-EEEEESCHHH
T ss_pred hHHhhCCC---CCEEEecCCC-CHH-----HHHHHHHHHHH-cC-----CEEEeCCCcCCHhHHhcCCe-eEEeCCCHHH
Confidence 78887776 6788877644 332 11222232322 12 12333343322211 3332 2346778888
Q ss_pred HHHHHHHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC---h
Q 012547 257 RKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP---L 333 (461)
Q Consensus 257 ~~~l~~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~---g 333 (461)
.+.++++|+.. .+++...+.-..++.+.+-|. .......+++|+..++++.|.+++++.+. +
T Consensus 173 ~~~~~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~--------------~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~ 237 (320)
T 4dll_A 173 FERSLPLLKVF-GRATHVGPHGSGQLTKLANQM--------------IVGITIGAVAEALLFATKGGADMAKVKEAITGG 237 (320)
T ss_dssp HHHHHHHHHHH-EEEEEEESTTHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTS
T ss_pred HHHHHHHHHhc-CCEEEeCCccHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Confidence 88899998877 677766665445666655554 22344568999999999999999887642 1
Q ss_pred hhhhhhhccccchhHHHHHHhcCCChhhHhhhhcCC-CccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHH
Q 012547 334 LADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGK-GMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKM 412 (461)
Q Consensus 334 lgDl~~T~~~sRN~~~G~~l~~g~~~~~~~~~~~~~-~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ 412 (461)
.++... .++ .+..+-++. +..+ ..--.....+.+.+++++.|+ + +|+++.
T Consensus 238 ~~~s~~----~~~--~~~~~l~~~--------~~~gf~~~~~~KDl~~~~~~a~~~g~--------------~-~p~~~~ 288 (320)
T 4dll_A 238 FADSRV----LQL--HGQRMVERD--------FAPRARLSIQLKDMRNALATAQEIGF--------------D-APITGL 288 (320)
T ss_dssp TTCBHH----HHT--HHHHHHTTC--------CCCSSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHH
T ss_pred cccCHH----HHH--hhhhhccCC--------CCCcccHHHHHHHHHHHHHHHHHcCC--------------C-ChHHHH
Confidence 111110 011 111221111 0000 012334556689999999995 6 899999
Q ss_pred HHHHHh
Q 012547 413 LYKILI 418 (461)
Q Consensus 413 ly~il~ 418 (461)
+.+++.
T Consensus 289 ~~~~~~ 294 (320)
T 4dll_A 289 FEQLYA 294 (320)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888775
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-18 Score=165.63 Aligned_cols=252 Identities=14% Similarity=0.069 Sum_probs=162.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|++. | ++|++|+|++++++.+. +
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~---------~------------------------ 41 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH-G-----YPLIIYDVFPDACKEFQ---------D------------------------ 41 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHH---------T------------------------
T ss_pred CeEEEEeccHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHH---------H------------------------
Confidence 6899999999999999999998 8 89999999987654311 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHHHHHH---HHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFEEIS---RYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl~~i~---~~l~~~~~~~iIIs~tkG 199 (461)
.++..+++++++++++|+||+||| ++.++.++.++. +++++ ++++|+ ++|
T Consensus 42 ----------------------~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~~~~l~~---~~~vv~-~s~ 95 (296)
T 2gf2_A 42 ----------------------AGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKK---GSLLID-SST 95 (296)
T ss_dssp ----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSGGGTCCT---TCEEEE-CSC
T ss_pred ----------------------cCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhHHhcCCC---CCEEEE-CCC
Confidence 024456778888889999999995 678899888753 34555 678888 788
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
+.+.. ...+.+.+.+. +.......+..||..+. .+.. .+..+++++..+.++++|+..|++++...+.-.
T Consensus 96 ~~~~~-----~~~~~~~~~~~-g~~~~~~p~~~g~~~a~---~~~~-~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~g~ 165 (296)
T 2gf2_A 96 IDPAV-----SKELAKEVEKM-GAVFMDAPVSGGVGAAR---SGNL-TFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGT 165 (296)
T ss_dssp CCHHH-----HHHHHHHHHHT-TCEEEECCEESHHHHHH---HTCE-EEEEESCGGGHHHHHHHHTTTEEEEEEEESTTH
T ss_pred CCHHH-----HHHHHHHHHHc-CCEEEEcCCCCChhHHh---cCcE-EEEeCCCHHHHHHHHHHHHHHcCCeEEeCCccH
Confidence 87752 11222223221 21000001233343222 2322 234567788899999999999998876555221
Q ss_pred HHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhh---hhhhcc-----------cc
Q 012547 280 HEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLAD---TYVTLL-----------KG 344 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgD---l~~T~~-----------~s 344 (461)
..+.+..- |....++..++.|+..+++++|.+++++.++ ..++ ..+++. .+
T Consensus 166 ~~~~kl~~--------------n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~ 231 (296)
T 2gf2_A 166 GQAAKICN--------------NMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSA 231 (296)
T ss_dssp HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGG
T ss_pred HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhc
Confidence 22332222 3333556678999999999999998877553 2121 112210 11
Q ss_pred chhHHHHHHhcCCChhhHhhhhcCCCccc-hHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 345 RNAWYGQELAKGRLTLDLGDSIKGKGMIQ-GISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 345 RN~~~G~~l~~g~~~~~~~~~~~~~~~vE-G~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
|++.. +-.++ ....++.++++++++|+ + +|+++++|+++.
T Consensus 232 ~~~~~-------------------g~~~~~~~kd~~~~~~~a~~~gv--------------~-~p~~~~~~~~~~ 272 (296)
T 2gf2_A 232 NNYQG-------------------GFGTTLMAKDLGLAQDSATSTKS--------------P-ILLGSLAHQIYR 272 (296)
T ss_dssp GTTCS-------------------SSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHH
T ss_pred cCCCC-------------------CCchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 22111 11122 34566789999999995 7 899999999886
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.7e-18 Score=166.79 Aligned_cols=263 Identities=12% Similarity=0.065 Sum_probs=167.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|.||+++|..|+++ | ++|++|+|++++++.+.+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~-G-----~~V~~~dr~~~~~~~~~~-------------------------------- 56 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEW-P-----GGVTVYDIRIEAMTPLAE-------------------------------- 56 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTS-T-----TCEEEECSSTTTSHHHHH--------------------------------
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH--------------------------------
Confidence 47999999999999999999999 8 999999999876653110
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.++..++|++++++ +|+||+|||. ..++++++++.+.+++ +++||.++.+ .
T Consensus 57 -----------------------~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~~~l~~---g~ivv~~st~-~ 108 (296)
T 3qha_A 57 -----------------------AGATLADSVADVAA-ADLIHITVLDDAQVREVVGELAGHAKP---GTVIAIHSTI-S 108 (296)
T ss_dssp -----------------------TTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHHTTCCT---TCEEEECSCC-C
T ss_pred -----------------------CCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHHHhcCC---CCEEEEeCCC-C
Confidence 03456788999888 9999999995 6899999999988876 6788776643 3
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHHHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (461)
+. +...+.+.+.+. +.......+..+|..+. .+.. .++++++++..+.++++|+..+.+++...+.-..+
T Consensus 109 ~~-----~~~~~~~~~~~~-g~~~~~~pv~g~~~~a~---~g~l-~~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a~ 178 (296)
T 3qha_A 109 DT-----TAVELARDLKAR-DIHIVDAPVSGGAAAAA---RGEL-ATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGT 178 (296)
T ss_dssp HH-----HHHHHHHHHGGG-TCEEEECCEESCHHHHH---HTCE-EEEEECCHHHHHHHHHHHHHHEEEEEEEESTTHHH
T ss_pred HH-----HHHHHHHHHHHc-CCEEEeCCCcCCHHHHh---cCCc-cEEecCCHHHHHHHHHHHHHHcCCeEEcCChhHHH
Confidence 32 111222222221 21000011233344333 3332 23457778888999999998888887777755566
Q ss_pred HHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc----ccchhHHHHHHhcC
Q 012547 282 VMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL----KGRNAWYGQELAKG 356 (461)
Q Consensus 282 ~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~----~sRN~~~G~~l~~g 356 (461)
+.+.+-|. .......+++|+..+++++|.+++++.++ ...|.+..+. ..| +..+.++
T Consensus 179 ~~Kl~~N~--------------~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~----~~~~~~~ 240 (296)
T 3qha_A 179 RMKLARNM--------------LTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD----NMKDLEP 240 (296)
T ss_dssp HHHHHHHH--------------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS----SCSCCCT
T ss_pred HHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh----chhhhhc
Confidence 66666655 22445568899999999999999988332 2223222211 111 1111111
Q ss_pred CChh-hHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 357 RLTL-DLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 357 ~~~~-~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
.... .... .. --.....+.+.+++++.|+ + +|+.+.+++++..
T Consensus 241 ~~~~f~~~~-----~~~~~~~KD~~~~~~~a~~~g~--------------~-~p~~~~~~~~~~~ 285 (296)
T 3qha_A 241 DNFLYQPFL-----HTRGLGEKDLSLALALGEAVSV--------------D-LPLARLAYEGLAA 285 (296)
T ss_dssp TSTTHHHHH-----HHHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHHH
T ss_pred CCCCCchhh-----hhhHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHHH
Confidence 0000 0000 00 0123345678899999995 6 8999999998754
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=164.97 Aligned_cols=252 Identities=13% Similarity=0.109 Sum_probs=166.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++|||+|||+|.||+++|..|++. | ++|++|+|++++++.+. +
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~---------~---------------------- 45 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINLLKE-G-----VTVYAFDLMEANVAAVV---------A---------------------- 45 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHH---------T----------------------
T ss_pred CCCEEEEECccHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHH---------H----------------------
Confidence 458999999999999999999998 8 89999999986554311 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHHH---HHHHHhhccCCCCEEEEEe
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE---EISRYWKERITVPVIISLA 197 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl~---~i~~~l~~~~~~~iIIs~t 197 (461)
.++...+++++++.++|+||+||| +..++.++. ++.+.+++ +++||+++
T Consensus 46 ------------------------~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~---~~~vv~~~ 98 (301)
T 3cky_A 46 ------------------------QGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKA---GTVIVDMS 98 (301)
T ss_dssp ------------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCT---TCEEEECC
T ss_pred ------------------------CCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCC---CCEEEECC
Confidence 023455678888889999999997 567888885 78888876 78999999
Q ss_pred ecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhh--hccCceEEEEeCChhHHHHHHHHhcCCCceEEecC
Q 012547 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev--~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
+|..... +.+.+.++..... ++..|....+. ..+..+ .+++++++..+.++++|+..|++++...
T Consensus 99 ~~~~~~~----------~~l~~~~~~~g~~--~~~~p~~~~~~~a~~g~~~-~~~~g~~~~~~~v~~ll~~~g~~~~~~~ 165 (301)
T 3cky_A 99 SVSPSST----------LKMAKVAAEKGID--YVDAPVSGGTKGAEAGTLT-IMVGASEAVFEKIQPVLSVIGKDIYHVG 165 (301)
T ss_dssp CCCHHHH----------HHHHHHHHHTTCE--EEECCEESHHHHHHHTCEE-EEEESCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCHHHH----------HHHHHHHHHcCCe--EEEccCCCCHHHHHcCCeE-EEECCCHHHHHHHHHHHHHhcCCEEEeC
Confidence 8874221 2233333211111 22334322211 123322 2355677888999999999999888776
Q ss_pred ChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-h---hhh--hhhhc---cccch
Q 012547 276 DLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-L---LAD--TYVTL---LKGRN 346 (461)
Q Consensus 276 Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-g---lgD--l~~T~---~~sRN 346 (461)
+.-...|.+.+-|. ....+..++.|+..++++.|.+++++... . .++ +..++ ..+||
T Consensus 166 ~~g~~~~~Kl~~N~--------------~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 231 (301)
T 3cky_A 166 DTGAGDAVKIVNNL--------------LLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGD 231 (301)
T ss_dssp STTHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCCCCCTCC
T ss_pred CCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhhhhhcCC
Confidence 65555677666664 23456678999999999999998776542 1 111 11111 11223
Q ss_pred hHHHHHHhcCCChhhHhhhhcCCCccch-HHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 347 AWYGQELAKGRLTLDLGDSIKGKGMIQG-ISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 347 ~~~G~~l~~g~~~~~~~~~~~~~~~vEG-~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
+..| .+++. ....+.++++++++|+ + +|+++++|+++.
T Consensus 232 ~~~g-------------------~~~~~~~kd~~~~~~~a~~~gv--------------~-~p~~~~~~~~~~ 270 (301)
T 3cky_A 232 FAGG-------------------FAMDLQHKDLGLALEAGKEGNV--------------P-LPMTAMATQIFE 270 (301)
T ss_dssp CSSS-------------------SBHHHHHHHHHHHHHHHHHHTC--------------C-CHHHHHHHHHHH
T ss_pred CCCC-------------------ccHHHHHHHHHHHHHHHHHhCC--------------C-ChHHHHHHHHHH
Confidence 2211 12222 2344689999999995 6 899999999886
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-17 Score=173.86 Aligned_cols=226 Identities=11% Similarity=0.039 Sum_probs=164.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCch----hhhhhhhhhHHHHHhhhhhhHHhhhhccc--cc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR----SVDRATAEHLFEVINSREDVLRRLIRRCA--YL 114 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~----~~~~~~~~~l~~~i~~~~~~~~~~~~n~~--~l 114 (461)
.+|||+|||+|+||+++|..|+++.| + +|++|+++++ +++.++ ++. ++. |.
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G-----~~~V~~~D~~~~~~~~kv~~l~---------~g~--------~~i~~~e 74 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPC-----FEKVLGFQRNSKSSGYKIEMLN---------RGE--------SPLKGEE 74 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTT-----CCEEEEECCCCTTTTTHHHHHT---------TTC--------CCSSCCG
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCC-----CCeEEEEECChhHhHHHHHHHH---------hcC--------CCccccC
Confidence 45899999999999999999997624 8 9999999998 776533 221 333 44
Q ss_pred chhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch------------hHHHHHHHHHH
Q 012547 115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------ETKEVFEEISR 182 (461)
Q Consensus 115 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~------------~~~~vl~~i~~ 182 (461)
+++. +++.++.. ...+.+++| .+++++||+||+|||+. ++..+++.+.+
T Consensus 75 ~gl~-----------~l~~~~~~-------~g~l~~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~ 135 (478)
T 3g79_A 75 PGLE-----------ELIGKVVK-------AGKFECTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGK 135 (478)
T ss_dssp GGHH-----------HHHHHHHH-------TTCEEEESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHH
T ss_pred CCHH-----------HHHHhhcc-------cCCeEEeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHh
Confidence 4432 12211100 025788899 57899999999999875 37888899999
Q ss_pred HhhccCCCCEEEEEeecCccccccccccCCHHHHHH-hHhCCC-CCcEEEEeCcchhHhhhcc----CceEEEEeCChhH
Q 012547 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMIN-RATGVP-IENILYLGGPNIASEIYNK----EYANARICGAEKW 256 (461)
Q Consensus 183 ~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~-~~lg~~-~~~v~vlsGPn~a~ev~~g----~~~~~~~~~~~~~ 256 (461)
++++ +++|| ..+++++. +...+++.+. +..|.. ...+.++++|.++.+.... .+..++.+.+++.
T Consensus 136 ~l~~---g~iVV-~~STv~pg-----tt~~v~~~ile~~~g~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~ 206 (478)
T 3g79_A 136 YLKP---GMLVV-LESTITPG-----TTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIREHDRIVGGIDEAS 206 (478)
T ss_dssp HCCT---TCEEE-ECSCCCTT-----TTTTHHHHHHHHHHCCCBTTTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHH
T ss_pred hcCC---CcEEE-EeCCCChH-----HHHHHHHHHHHHhcCCCcCCceeEEeCCccCCccchhhhhcCCcEEEEeCCHHH
Confidence 9987 66665 55588887 5677776443 555532 1346789999998775531 2344566778888
Q ss_pred HHHHHHHhcCC-CceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 257 RKPLAKFLRRP-HFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 257 ~~~l~~ll~~~-g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
.+.++++|+.. +..++...|+...|++|++.|.+- +.-...++|+..+|+++|.|+..+..
T Consensus 207 ~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~--------------a~~Ia~~nE~~~l~e~~GiD~~~v~~ 268 (478)
T 3g79_A 207 TKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFR--------------DLQIAAINQLALYCEAMGINVYDVRT 268 (478)
T ss_dssp HHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 89999999987 677888889999999999998831 22234789999999999999877643
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=162.83 Aligned_cols=259 Identities=12% Similarity=0.064 Sum_probs=167.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++|||+|||+|.||+++|..|++. | ++|++|+ ++++++.+.+ .
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~-~~~~~~~~~~---------~--------------------- 44 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARA-G-----HQLHVTT-IGPVADELLS---------L--------------------- 44 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHT-T-----CEEEECC-SSCCCHHHHT---------T---------------------
T ss_pred CCCEEEEEccCHHHHHHHHHHHhC-C-----CEEEEEc-CHHHHHHHHH---------c---------------------
Confidence 458999999999999999999998 8 8999999 8765543110 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh-HHHHHH---HHHHHhhccCCCCEEEEEe
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFE---EISRYWKERITVPVIISLA 197 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~-~~~vl~---~i~~~l~~~~~~~iIIs~t 197 (461)
++..+++++++++++|+||+|||... ++.++. ++.+.+.+ +++||+++
T Consensus 45 -------------------------g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~---~~~vv~~s 96 (295)
T 1yb4_A 45 -------------------------GAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQ---GKTIVDMS 96 (295)
T ss_dssp -------------------------TCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSCCT---TEEEEECS
T ss_pred -------------------------CCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhcCCC---CCEEEECC
Confidence 12234677788889999999998664 888887 77777776 68889888
Q ss_pred ecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHh--hhccCceEEEEeCChhHHHHHHHHhcCCCceEEecC
Q 012547 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~e--v~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
+|.... .+.+.+.++.. .+.++..|..... ...+... ++++++++..+.++++|+..|++++...
T Consensus 97 ~~~~~~----------~~~l~~~~~~~--g~~~~~~p~~~~~~~a~~g~~~-~~~~~~~~~~~~~~~ll~~~g~~~~~~~ 163 (295)
T 1yb4_A 97 SISPIE----------TKRFAQRVNEM--GADYLDAPVSGGEIGAREGTLS-IMVGGEQKVFDRVKPLFDILGKNITLVG 163 (295)
T ss_dssp CCCHHH----------HHHHHHHHHTT--TEEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCHHH----------HHHHHHHHHHc--CCeEEEccCCCCHHHHHcCCeE-EEECCCHHHHHHHHHHHHHhcCCEEEeC
Confidence 774322 12233433211 1222233332211 1134332 3456677888999999999999888777
Q ss_pred ChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhccccchhHHHHHHh
Q 012547 276 DLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYGQELA 354 (461)
Q Consensus 276 Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G~~l~ 354 (461)
|.-...|.+.+-|.+ ..++..++.|+..++++.|.+++++... ..++ .++...++ ..+..+.
T Consensus 164 ~~~~~~~~Kl~~n~~--------------~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~--~~s~~~~~-~~~~~~~ 226 (295)
T 1yb4_A 164 GNGDGQTCKVANQII--------------VALNIEAVSEALVFASKAGADPVRVRQALMGGF--ASSRILEV-HGERMIN 226 (295)
T ss_dssp STTHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSS--SCBHHHHH-HHHHHHT
T ss_pred CCCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC--CCCHHHHH-hhHHHhc
Confidence 766667777666652 2455678999999999999998776542 1111 11111122 1222332
Q ss_pred cCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 355 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 355 ~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
+..+ .+..+-.....++.++++++++|+ + +|+++++|+++.
T Consensus 227 ~~~~--------~g~~~~~~~kd~~~~~~~a~~~g~--------------~-~p~~~~~~~~~~ 267 (295)
T 1yb4_A 227 RTFE--------PGFKIALHQKDLNLALQSAKALAL--------------N-LPNTATCQELFN 267 (295)
T ss_dssp TCCC--------CSSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHH
T ss_pred CCCC--------CCCchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 2110 111122344566789999999995 6 899999999876
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-17 Score=164.06 Aligned_cols=252 Identities=12% Similarity=0.019 Sum_probs=169.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+++ | .++|++|+|+++..+.... ..+. +..
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~-G----~~~V~~~dr~~~~~~~~~~-----~~~~--------------~~~------ 73 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGR-N----AARLAAYDLRFNDPAASGA-----LRAR--------------AAE------ 73 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-T----CSEEEEECGGGGCTTTHHH-----HHHH--------------HHH------
T ss_pred CCeEEEECccHHHHHHHHHHHHc-C----CCeEEEEeCCCccccchHH-----HHHH--------------HHH------
Confidence 47999999999999999999988 6 1799999999743321100 0000 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEec-CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.++ ++ ++++++++||+||+|||++...+.++++.+.+++ +++||+++ ++.
T Consensus 74 -----------------------~g~--~~~s~~e~~~~aDvVi~avp~~~~~~~~~~i~~~l~~---~~ivv~~s-t~~ 124 (317)
T 4ezb_A 74 -----------------------LGV--EPLDDVAGIACADVVLSLVVGAATKAVAASAAPHLSD---EAVFIDLN-SVG 124 (317)
T ss_dssp -----------------------TTC--EEESSGGGGGGCSEEEECCCGGGHHHHHHHHGGGCCT---TCEEEECC-SCC
T ss_pred -----------------------CCC--CCCCHHHHHhcCCEEEEecCCHHHHHHHHHHHhhcCC---CCEEEECC-CCC
Confidence 023 44 7778899999999999999888888999998877 67888776 555
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCC-hHHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD-LVTH 280 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D-i~gv 280 (461)
+.. ...+.+.+.+. |.... -+.++||..+. .+.++ ++++++++ +.++++|+..+.+++...+ +-..
T Consensus 125 p~~-----~~~~~~~l~~~-g~~~~-d~pv~g~~~a~---~g~l~-i~vgg~~~--~~~~~ll~~~g~~v~~~g~~~g~a 191 (317)
T 4ezb_A 125 PDT-----KALAAGAIATG-KGSFV-EGAVMARVPPY---AEKVP-ILVAGRRA--VEVAERLNALGMNLEAVGETPGQA 191 (317)
T ss_dssp HHH-----HHHHHHHHHTS-SCEEE-EEEECSCSTTT---GGGSE-EEEESTTH--HHHHHHHHTTTCEEEEEESSTTHH
T ss_pred HHH-----HHHHHHHHHHc-CCeEE-eccCCCCchhh---cCCEE-EEEeCChH--HHHHHHHHHhCCCeEEeCCCcCHH
Confidence 541 22233333321 21111 13578886543 33333 34555444 8899999999988877776 6667
Q ss_pred HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC--hh-h-hhhhhc--cccchhHHHHHHh
Q 012547 281 EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP--LL-A-DTYVTL--LKGRNAWYGQELA 354 (461)
Q Consensus 281 e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~--gl-g-Dl~~T~--~~sRN~~~G~~l~ 354 (461)
++.+.+-|.+ ......+++|+..+++++|.+++.+..+ +. + +....+ ..+|++..|..+
T Consensus 192 ~~~Kl~~N~~--------------~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~- 256 (317)
T 4ezb_A 192 SSLKMIRSVM--------------IKGVEALLIEALSSAERAGVTERILDSVQETFPGLDWRDVADYYLSRTFEHGARR- 256 (317)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCccccHHHhhhhhhcCCCCCCcch-
Confidence 8888777763 2344568899999999999999765443 11 1 222222 255666555543
Q ss_pred cCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHH
Q 012547 355 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKI 416 (461)
Q Consensus 355 ~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~i 416 (461)
....+.+.+++++.|+ + +|+++.++++
T Consensus 257 --------------------~KDl~~~~~~a~~~g~--------------~-~pl~~~~~~~ 283 (317)
T 4ezb_A 257 --------------------VTEMTEAAETIESFGL--------------N-APMSRAACET 283 (317)
T ss_dssp --------------------HHHHHHHHHHHHTTTC--------------C-CHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHcCC--------------C-ChHHHHHHHH
Confidence 2334578999999995 6 8999999988
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=175.76 Aligned_cols=273 Identities=11% Similarity=0.027 Sum_probs=170.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|+++ | ++|.+|+|++++++.+.+. . .++
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~-G-----~~V~v~dr~~~~~~~l~~~--------~-------------~~g------- 48 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH-G-----FVVCAFNRTVSKVDDFLAN--------E-------------AKG------- 48 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHHHT--------T-------------TTT-------
T ss_pred CeEEEEChHHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHhc--------c-------------ccC-------
Confidence 7899999999999999999999 8 8999999998876642210 0 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHh---cCCCEEEEcCCch-hHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV---WDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av---~~aDiIIiaVps~-~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.++..++|+++++ +++|+||++||+. .++++++++.+++++ +++||++++|
T Consensus 49 ----------------------~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~~l~~~l~~---g~iII~~s~~ 103 (482)
T 2pgd_A 49 ----------------------TKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDI---GDIIIDGGNS 103 (482)
T ss_dssp ----------------------SSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHHHHHHHCCT---TCEEEECSCC
T ss_pred ----------------------CCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHHHHHHHHhhcCC---CCEEEECCCC
Confidence 0355677888876 4899999999995 899999999999887 6899999998
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
..... ..+.+.+.+ .+ +.++.+|....+...+..+.++++++++..+.++++|+..+.++. +|..+
T Consensus 104 ~~~~~------~~l~~~l~~-~g-----~~~v~~pv~g~~~~a~~g~~i~~gg~~e~~~~v~~ll~~~g~~v~--d~~~~ 169 (482)
T 2pgd_A 104 EYRDT------MRRCRDLKD-KG-----ILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVG--TGEPC 169 (482)
T ss_dssp CHHHH------HHHHHHHHH-TT-----CEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHHSCBCT--TSCBS
T ss_pred CHHHH------HHHHHHHHH-cC-----CeEeCCCCCCChhhhccCCeEEeCCCHHHHHHHHHHHHHhhhhcc--CCCcc
Confidence 86542 112233322 12 123345554333322222233556677788899999998877651 11111
Q ss_pred HHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHh-CCCchhhccC-h---hhhhhhhccccchhHHHHHHh
Q 012547 280 HEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLL-AEEPEKLAGP-L---LADTYVTLLKGRNAWYGQELA 354 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~-G~~~~t~~g~-g---lgDl~~T~~~sRN~~~G~~l~ 354 (461)
+.++|. +-.+...++. .|.....+.+++.|+..++++. |.+++++.+. + -|+ .+.+..|++. ..+.
T Consensus 170 ~~~~g~--~g~g~~~Kl~---~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~--~~S~l~~~~~--~~l~ 240 (482)
T 2pgd_A 170 CDWVGD--DGAGHFVKMV---HNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTE--LDSFLIEITA--SILK 240 (482)
T ss_dssp CCCCEE--TTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTT--TCBHHHHHHH--HHHH
T ss_pred eEEECC--CcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCC--cCchHHHHHh--HHhh
Confidence 111110 0001111222 2444466778999999999998 9998877553 2 122 1212334443 1233
Q ss_pred cCC-----ChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHH-HHHHHHhc
Q 012547 355 KGR-----LTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILK-MLYKILIM 419 (461)
Q Consensus 355 ~g~-----~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~-~ly~il~~ 419 (461)
++. .++.+. .......+.+.++++++++|+ + +|++. .+|+.+..
T Consensus 241 ~~d~~~~~~ld~i~------d~~~~k~t~~~~~~~A~~~Gv--------------~-~P~i~~av~~~~~s 290 (482)
T 2pgd_A 241 FQDADGKHLLPKIR------DSAGQKGTGKWTAISALEYGV--------------P-VTLIGEAVFARCLS 290 (482)
T ss_dssp CBCTTSSBSGGGSC------CCCCCCSHHHHHHHHHHHHTC--------------C-CHHHHHHHHHHHHH
T ss_pred ccCCCCCeeecccc------cccccccHHHHHHHHHHHcCC--------------C-cchHHHHHHHHhhh
Confidence 221 111111 112234566789999999995 7 89995 79998754
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-18 Score=166.45 Aligned_cols=210 Identities=12% Similarity=0.067 Sum_probs=148.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|++. | ++|++|+|++++++.+. +. +.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~---------~~---------------g~------ 44 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR-G-----HYLIGVSRQQSTCEKAV---------ER---------------QL------ 44 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHH---------HT---------------TS------
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHH---------hC---------------CC------
Confidence 7999999999999999999998 8 89999999987654311 00 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
....++|++++ .++|+||+|||++.++++++++.+++++ +++|+++ .++...
T Consensus 45 -----------------------~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~~~l~~~~~~---~~~vv~~-~~~~~~ 96 (279)
T 2f1k_A 45 -----------------------VDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLIPHLSP---TAIVTDV-ASVKTA 96 (279)
T ss_dssp -----------------------CSEEESCGGGG-TTCSEEEECSCHHHHHHHHHHHGGGSCT---TCEEEEC-CSCCHH
T ss_pred -----------------------CccccCCHHHh-CCCCEEEEECCHHHHHHHHHHHHhhCCC---CCEEEEC-CCCcHH
Confidence 11345677777 8999999999999999999999998876 6788886 333322
Q ss_pred cccccccCCHHHHHHhHhCCC--CCcEE--EEeCcchhH-hhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCC
Q 012547 204 LEAVPRIITPTQMINRATGVP--IENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~--~~~v~--vlsGPn~a~-ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
. .+.+.+.+... .+++. ..+||+++. ++..+.++.+... .+++..+.++++|+..|++++..+|
T Consensus 97 ~---------~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~ 167 (279)
T 2f1k_A 97 I---------AEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLCTP 167 (279)
T ss_dssp H---------HHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEECCH
T ss_pred H---------HHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 0 12233333210 11221 345787776 4556655554442 3577889999999999999999999
Q ss_pred hHHHHHHHHHHHH-HHHHHhhccC----c----cchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 277 LVTHEVMGGLKNV-YAIGAALTNE----S----ATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 277 i~gve~~galKNv-~Ai~~Gi~~g----~----~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
....+|+++++|. ..+++++.++ + .+....++++++.|+.+++ +.+|..+
T Consensus 168 ~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~---~~~p~~~ 226 (279)
T 2f1k_A 168 ADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFRDTSRVG---GGNPELG 226 (279)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTGG---GSCHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCCcccchhccc---CCCHHHH
Confidence 9999999999996 6677777653 2 1455567788888887665 3555443
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=157.54 Aligned_cols=157 Identities=18% Similarity=0.228 Sum_probs=121.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||++++..|+++ |+ .+ .+|++|+|++++++.+.+ .|
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~-g~-~~-~~V~v~dr~~~~~~~l~~---------------------~~--------- 49 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIAN-GY-DP-NRICVTNRSLDKLDFFKE---------------------KC--------- 49 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHT-TC-CG-GGEEEECSSSHHHHHHHH---------------------TT---------
T ss_pred CCEEEEEcccHHHHHHHHHHHHC-CC-CC-CeEEEEeCCHHHHHHHHH---------------------Hc---------
Confidence 47999999999999999999999 81 11 289999999876653110 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH-hhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~-l~~~~~~~iIIs~tkGi~ 201 (461)
++..++|..++++++|+||+|||++.++++++++.++ +++ +++|||+++|+.
T Consensus 50 ------------------------gi~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~l~~---~~iiiS~~agi~ 102 (280)
T 3tri_A 50 ------------------------GVHTTQDNRQGALNADVVVLAVKPHQIKMVCEELKDILSET---KILVISLAVGVT 102 (280)
T ss_dssp ------------------------CCEEESCHHHHHSSCSEEEECSCGGGHHHHHHHHHHHHHTT---TCEEEECCTTCC
T ss_pred ------------------------CCEEeCChHHHHhcCCeEEEEeCHHHHHHHHHHHHhhccCC---CeEEEEecCCCC
Confidence 3456778888899999999999999999999999998 876 679999999997
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEec
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN 274 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s 274 (461)
.. .+++.++.+ .+ ++..+||++..++.+... +..+ .+++..+.+.++|+..|..+++.
T Consensus 103 ~~------------~l~~~l~~~-~~-vvr~mPn~p~~v~~g~~~-l~~~~~~~~~~~~~v~~l~~~iG~~~~v~ 162 (280)
T 3tri_A 103 TP------------LIEKWLGKA-SR-IVRAMPNTPSSVRAGATG-LFANETVDKDQKNLAESIMRAVGLVIWVS 162 (280)
T ss_dssp HH------------HHHHHHTCC-SS-EEEEECCGGGGGTCEEEE-EECCTTSCHHHHHHHHHHHGGGEEEEECS
T ss_pred HH------------HHHHHcCCC-Ce-EEEEecCChHHhcCccEE-EEeCCCCCHHHHHHHHHHHHHCCCeEEEC
Confidence 64 467777642 34 467889999888776322 1222 24678899999999999866653
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-16 Score=159.49 Aligned_cols=163 Identities=14% Similarity=0.129 Sum_probs=121.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch--hhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR--SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+|||+|||+|+||++||..|+++ |...+ ++|++|+|+++ +++.++ +
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~-G~~~~-~~V~v~~r~~~~~~~~~l~---------~--------------------- 69 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAA-GVLAA-HKIMASSPDMDLATVSALR---------K--------------------- 69 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHT-TSSCG-GGEEEECSCTTSHHHHHHH---------H---------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCCCc-ceEEEECCCccHHHHHHHH---------H---------------------
Confidence 47999999999999999999998 73222 68999999875 443210 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.++.+++++.++++++|+||+|||+++++++++++.+.+.+ +++||++++|+
T Consensus 70 -------------------------~G~~~~~~~~e~~~~aDvVilav~~~~~~~vl~~l~~~l~~---~~ivvs~s~gi 121 (322)
T 2izz_A 70 -------------------------MGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIED---RHIVVSCAAGV 121 (322)
T ss_dssp -------------------------HTCEEESCHHHHHHHCSEEEECSCGGGHHHHHHHHGGGCCT---TCEEEECCTTC
T ss_pred -------------------------cCCEEeCChHHHhccCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEeCCCC
Confidence 02455677888889999999999999999999999998876 68999999998
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCC---hhHHHHHHHHhcCCCceEEecCCh
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGA---EKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~---~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
.... +.+.+.+.++ .. .++...|+++.++..+. .++.+++ ++..+.++++|+..|+.+++.+|.
T Consensus 122 ~~~~--------l~~~l~~~~~--~~-~vv~~~p~~p~~~~~g~--~v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~ 188 (322)
T 2izz_A 122 TISS--------IEKKLSAFRP--AP-RVIRCMTNTPVVVREGA--TVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDL 188 (322)
T ss_dssp CHHH--------HHHHHHTTSS--CC-EEEEEECCGGGGGTCEE--EEEEECTTCCHHHHHHHHHHHHTTEEEEECCGGG
T ss_pred CHHH--------HHHHHhhcCC--CC-eEEEEeCCcHHHHcCCe--EEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHH
Confidence 7541 2333333322 12 35678899988877663 2233333 677889999999999999888776
Q ss_pred H
Q 012547 278 V 278 (461)
Q Consensus 278 ~ 278 (461)
+
T Consensus 189 ~ 189 (322)
T 2izz_A 189 I 189 (322)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.4e-17 Score=157.98 Aligned_cols=256 Identities=16% Similarity=0.141 Sum_probs=162.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
||||+|||+|+||+++|..|++ | ++|++|+|++++++.+.+. +
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~--g-----~~V~~~~~~~~~~~~~~~~------------------------g------ 43 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR--R-----FPTLVWNRTFEKALRHQEE------------------------F------ 43 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT--T-----SCEEEECSSTHHHHHHHHH------------------------H------
T ss_pred CCeEEEEcccHHHHHHHHHHhC--C-----CeEEEEeCCHHHHHHHHHC------------------------C------
Confidence 3789999999999999999986 5 8999999998765532110 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh-HHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~-~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+..++ +++++.++|+||+|||+.. ++++++++.+.+++ ++++|+++++-.
T Consensus 44 -------------------------~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~l~~---~~~vv~~s~~~~ 94 (289)
T 2cvz_A 44 -------------------------GSEAV-PLERVAEARVIFTCLPTTREVYEVAEALYPYLRE---GTYWVDATSGEP 94 (289)
T ss_dssp -------------------------CCEEC-CGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCCT---TEEEEECSCCCH
T ss_pred -------------------------CcccC-HHHHHhCCCEEEEeCCChHHHHHHHHHHHhhCCC---CCEEEECCCCCH
Confidence 11122 4566789999999999774 99999999888776 678887775432
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcch--hHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~--a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
.. .+.+.+.++.. .+.++..|.. ......+... +..+++++..+.++++| ..|++++...|...
T Consensus 95 ~~----------~~~l~~~~~~~--g~~~~~~p~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~ll-~~g~~~~~~~~~~~ 160 (289)
T 2cvz_A 95 EA----------SRRLAERLREK--GVTYLDAPVSGGTSGAEAGTLT-VMLGGPEEAVERVRPFL-AYAKKVVHVGPVGA 160 (289)
T ss_dssp HH----------HHHHHHHHHTT--TEEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHGGGC-TTEEEEEEEESTTH
T ss_pred HH----------HHHHHHHHHHc--CCEEEEecCCCChhHHhhCCeE-EEECCCHHHHHHHHHHH-hhcCCeEEcCCCcH
Confidence 21 12344444321 1223334533 1222344332 23466778889999999 99998777777655
Q ss_pred HHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhccccchhHHHHHHhcCCC
Q 012547 280 HEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYGQELAKGRL 358 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G~~l~~g~~ 358 (461)
..|.+..-|. ...++..++.|+..+++++|.+++++.+. ..++.-. ...+++..+..+.+..
T Consensus 161 ~~~~k~~~n~--------------~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s--~~~~~~~~~~~l~~~~- 223 (289)
T 2cvz_A 161 GHAVKAINNA--------------LLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRS--NATENLIPQRVLTRAF- 223 (289)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCB--HHHHHTHHHHTTTSCC-
T ss_pred HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCC--HHHHHhccchhhcCCC-
Confidence 6666655554 23566789999999999999998876543 2111100 0011111101111111
Q ss_pred hhhHhhhhcCCCccch-HHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 359 TLDLGDSIKGKGMIQG-ISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 359 ~~~~~~~~~~~~~vEG-~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
..+.+++. ....+.++++++++|+ + +|+++++|+++.
T Consensus 224 --------~~g~~~~~~~kd~~~~~~~a~~~gv--------------~-~p~~~~v~~~~~ 261 (289)
T 2cvz_A 224 --------PKTFALGLLVKDLGIAMGVLDGEKA--------------P-SPLLRLAREVYE 261 (289)
T ss_dssp --------CCSSBHHHHHHHHHHHHHHHTTTCC--------------C-CHHHHHHHHHHH
T ss_pred --------CCCcChHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 11123332 2345689999999995 6 899999999886
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.7e-17 Score=155.99 Aligned_cols=161 Identities=18% Similarity=0.128 Sum_probs=119.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||++++..|+++ |++.+ .+|.+|+|++++++.+.++ +
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~-g~~~~-~~V~~~~r~~~~~~~~~~~---------------------~--------- 49 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINK-NIVSS-NQIICSDLNTANLKNASEK---------------------Y--------- 49 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT-TSSCG-GGEEEECSCHHHHHHHHHH---------------------H---------
T ss_pred CCeEEEECccHHHHHHHHHHHhC-CCCCC-CeEEEEeCCHHHHHHHHHH---------------------h---------
Confidence 47999999999999999999999 82111 2999999998765532100 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
++..++|++++++++|+||+|||++.++++++++.+++++ ++++||+++|+..
T Consensus 50 ------------------------g~~~~~~~~e~~~~aDvVilav~~~~~~~v~~~l~~~l~~---~~~vvs~~~gi~~ 102 (247)
T 3gt0_A 50 ------------------------GLTTTTDNNEVAKNADILILSIKPDLYASIINEIKEIIKN---DAIIVTIAAGKSI 102 (247)
T ss_dssp ------------------------CCEECSCHHHHHHHCSEEEECSCTTTHHHHC---CCSSCT---TCEEEECSCCSCH
T ss_pred ------------------------CCEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEecCCCCH
Confidence 2455678888889999999999999999999999998876 6899999999875
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE--eCChhHHHHHHHHhcCCCceEEecCCh
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
+ .+++.++.+ .+ .+...|+++..+..|... +.. ..+++..+.++++|+..|..+++.++.
T Consensus 103 ~------------~l~~~~~~~-~~-~v~~~p~~p~~~~~g~~~-~~~~~~~~~~~~~~~~~l~~~~G~~~~~~e~~ 164 (247)
T 3gt0_A 103 E------------STENAFNKK-VK-VVRVMPNTPALVGEGMSA-LCPNEMVTEKDLEDVLNIFNSFGQTEIVSEKL 164 (247)
T ss_dssp H------------HHHHHHCSC-CE-EEEEECCGGGGGTCEEEE-EEECTTCCHHHHHHHHHHHGGGEEEEECCGGG
T ss_pred H------------HHHHHhCCC-Cc-EEEEeCChHHHHcCceEE-EEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHH
Confidence 4 466767532 23 456789998877776422 222 246778899999999999877776554
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-16 Score=155.65 Aligned_cols=251 Identities=10% Similarity=0.047 Sum_probs=162.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCc--hhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG--RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~--~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
.+|||+|||+|.||+++|..|+++ | + +|++|+|++ +..+.+ ..
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~-G-----~~~V~~~dr~~~~~~~~~~--------------------------~~-- 68 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQA-G-----AIDMAAYDAASAESWRPRA--------------------------EE-- 68 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHH-S-----CCEEEEECSSCHHHHHHHH--------------------------HH--
T ss_pred CCCEEEEECccHHHHHHHHHHHHC-C-----CCeEEEEcCCCCHHHHHHH--------------------------HH--
Confidence 468999999999999999999999 8 8 999999973 333210 00
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.++..++++++++++||+||+|||++...++++++.+.+++ +++||.++
T Consensus 69 ---------------------------~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~l~~~l~~---~~ivvd~s- 117 (312)
T 3qsg_A 69 ---------------------------LGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQAGPHLCE---GALYADFT- 117 (312)
T ss_dssp ---------------------------TTCEECSCHHHHHHHCSEEEECSCTTTHHHHHHHHGGGCCT---TCEEEECC-
T ss_pred ---------------------------CCCEEeCCHHHHHhcCCEEEEecCchhHHHHHHhhHhhcCC---CCEEEEcC-
Confidence 03456678888899999999999999988899999998876 67888766
Q ss_pred cCccccccccccCCHHHHHHhHh-CCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCC-
Q 012547 199 GVEAELEAVPRIITPTQMINRAT-GVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD- 276 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~l-g~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D- 276 (461)
++.+. +...+.+.+.+.. |..... +.++||..+. .+..+ +++++++. +.++++|+..+.+++...+
T Consensus 118 t~~~~-----~~~~~~~~~~~~~~g~~~vd-~pv~g~~~~~---~g~l~-i~vgg~~~--~~~~~ll~~~g~~~~~~g~~ 185 (312)
T 3qsg_A 118 SCSPA-----VKRAIGDVISRHRPSAQYAA-VAVMSAVKPH---GHRVP-LVVDGDGA--RRFQAAFTLYGCRIEVLDGE 185 (312)
T ss_dssp CCCHH-----HHHHHHHHHHHHCTTCEEEE-EEECSCSTTT---GGGSE-EEEESTTH--HHHHHHHHTTTCEEEECCSS
T ss_pred CCCHH-----HHHHHHHHHHhhcCCCeEEe-ccccCCchhh---cCCEE-EEecCChH--HHHHHHHHHhCCCeEEcCCC
Confidence 44443 1222333333321 321111 3456665433 33333 34455444 8899999999998887776
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC--hhhh--h--hhhccccchhHHH
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP--LLAD--T--YVTLLKGRNAWYG 350 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~--glgD--l--~~T~~~sRN~~~G 350 (461)
+-..++.+.+-|.+. .....+++|+..+++++|.+++.+..+ +.+. + +.....+|++..|
T Consensus 186 ~g~a~~~Kl~~n~~~--------------~~~~~~~~Ea~~la~~~Gld~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 251 (312)
T 3qsg_A 186 VGGAALLKMCRSAVL--------------KGLEALFLEALAAAEKMGLADRVLASLDASFPEHHLRDLALYLVERNLEHA 251 (312)
T ss_dssp TTHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHSGGGTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCchhHHHhhhHhhcCCCCcc
Confidence 666777777666622 233357899999999999988433211 1110 0 0000122333332
Q ss_pred HHHhcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 351 QELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 351 ~~l~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
..+ ....+.+.+.+++.|+ + +|+++++++++..
T Consensus 252 ~~~---------------------~KDl~~~~~~a~~~g~--------------~-~pl~~~~~~~~~~ 284 (312)
T 3qsg_A 252 DRR---------------------AHELGEVAATLCSVGV--------------E-PLVAEAGYRRLTR 284 (312)
T ss_dssp HHH---------------------HHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHHH
T ss_pred cch---------------------HHHHHHHHHHHHHcCC--------------C-cHHHHHHHHHHHH
Confidence 222 2344578899999995 6 8999999887753
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=169.25 Aligned_cols=227 Identities=13% Similarity=0.095 Sum_probs=156.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++|||+|||+|+||+.+|..|+++ |. +++|++|++++++++.+++ +. .+.+.+++.
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~-g~---g~~V~~~D~~~~~v~~l~~---------g~--------~~i~e~gl~--- 63 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHK-CP---HITVTVVDMNTAKIAEWNS---------DK--------LPIYEPGLD--- 63 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHH-CT---TSEEEEECSCHHHHHHHTS---------SS--------CSSCCTTHH---
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-CC---CCEEEEEECCHHHHHHHHC---------CC--------CCcCCCCHH---
Confidence 468999999999999999999987 30 1799999999988776432 11 222333221
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch---------------hHHHHHHHHHHHhhc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST---------------ETKEVFEEISRYWKE 186 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~---------------~~~~vl~~i~~~l~~ 186 (461)
+++..+. ..++.+++|+++++++||+||+|||+. ++++++++|.+++++
T Consensus 64 --------~~~~~~~--------~~~l~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~ 127 (481)
T 2o3j_A 64 --------EIVFAAR--------GRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGG 127 (481)
T ss_dssp --------HHHHHHB--------TTTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCS
T ss_pred --------HHHHHhh--------cCCEEEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCC
Confidence 1111100 014788899988899999999999763 489999999999887
Q ss_pred cCCCCEEEEEeecCccccccccccCCHHHHHHhHhCC-CCCcEEEEeCcchhHhhhc----cCceEEEEeCCh-----hH
Q 012547 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGV-PIENILYLGGPNIASEIYN----KEYANARICGAE-----KW 256 (461)
Q Consensus 187 ~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~-~~~~v~vlsGPn~a~ev~~----g~~~~~~~~~~~-----~~ 256 (461)
+++||..+ ++.+. +...+.+.+.+..+. ....+.+.++|.++.+... ..+..+++++.+ +.
T Consensus 128 ---g~iVV~~S-Tv~~g-----t~~~l~~~l~~~~~~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a 198 (481)
T 2o3j_A 128 ---PKIVVEKS-TVPVK-----AAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQA 198 (481)
T ss_dssp ---CEEEEECS-CCCTT-----HHHHHHHHHHHHTC----CCEEEEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHH
T ss_pred ---CCEEEECC-CCCCC-----HHHHHHHHHHHhhCcCcCCceEEEeCcccccccchhhcccCCCEEEEEecCchhhHHH
Confidence 66666444 66655 233344555542221 1134567899998766542 223334554332 46
Q ss_pred HHHHHHHhcCCCc-eEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 257 RKPLAKFLRRPHF-TVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 257 ~~~l~~ll~~~g~-~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
.+.++++|+..+. .++...|+...||.|.+.|.+ .++....++|+..+|+++|.+++++.+
T Consensus 199 ~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~--------------~a~~ia~~nE~~~la~~~Gid~~~v~~ 260 (481)
T 2o3j_A 199 VAELVRIYENWVPRNRIITTNTWSSELSKLVANAF--------------LAQRISSINSISAVCEATGAEISEVAH 260 (481)
T ss_dssp HHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 6888999998874 677788999999999988873 244456899999999999999887654
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=167.84 Aligned_cols=278 Identities=11% Similarity=0.022 Sum_probs=177.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+++ | ++|.+|+|++++++.+.++ .++
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~-G-----~~V~v~dr~~~~~~~l~~~----------------------~~~------ 50 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESR-G-----YTVAIYNRTTSKTEEVFKE----------------------HQD------ 50 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHHH----------------------TTT------
T ss_pred CCcEEEEeeHHHHHHHHHHHHhC-C-----CEEEEEcCCHHHHHHHHHh----------------------CcC------
Confidence 37899999999999999999999 8 8999999998776542210 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC---CCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~---aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.++..++|++++++. +|+||+|||+ +.++++++++.+++++ +++||++++
T Consensus 51 -----------------------~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~vl~~l~~~l~~---g~iiId~s~ 104 (474)
T 2iz1_A 51 -----------------------KNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDI---GDILIDGGN 104 (474)
T ss_dssp -----------------------SCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHHHHHHGGGCCT---TCEEEECSC
T ss_pred -----------------------CCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHHHHHHHhhCCC---CCEEEECCC
Confidence 035567788887776 9999999998 5899999999998877 689999998
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHh--hhccCceEEEEeCChhHHHHHHHHhcCCCce------
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFT------ 270 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~e--v~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~------ 270 (461)
|..... +.+.+.+... .+.++..|....+ ...|. + ++++++++..+.++++|+..+.+
T Consensus 105 ~~~~~~----------~~l~~~l~~~--g~~~v~~pv~gg~~~a~~g~-~-i~~gg~~~~~~~v~~ll~~~g~~~~~dge 170 (474)
T 2iz1_A 105 THFPDT----------MRRNAELADS--GINFIGTGVSGGEKGALLGP-S-MMPGGQKEAYDLVAPIFEQIAAKAPQDGK 170 (474)
T ss_dssp CCHHHH----------HHHHHHTTTS--SCEEEEEEECSHHHHHHHCC-C-EEEEECHHHHHHHHHHHHHHSCBCTTTCC
T ss_pred CCHHHH----------HHHHHHHHHC--CCeEECCCCCCChhhhccCC-e-EEecCCHHHHHHHHHHHHHHhcccccCCC
Confidence 875431 2344444321 1222333443222 22343 3 34566778888899998876654
Q ss_pred --EEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHH-hCCCchhhccC------h-hhhhhhh
Q 012547 271 --VWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHL-LAEEPEKLAGP------L-LADTYVT 340 (461)
Q Consensus 271 --v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a-~G~~~~t~~g~------g-lgDl~~T 340 (461)
+....+.-...|.+..- |....++.+++.|+..++++ +|.+++++.++ | +++...+
T Consensus 171 ~~~~~~g~~g~g~~~Kl~~--------------N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~ 236 (474)
T 2iz1_A 171 PCVAYMGANGAGHYVKMVH--------------NGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIE 236 (474)
T ss_dssp BSBCCCBSTTHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHH
T ss_pred ceEEEECCccHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHH
Confidence 22233321123333333 33345667899999999999 89998876542 3 5556666
Q ss_pred cc----ccchhHHHHHHhcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHH--H
Q 012547 341 LL----KGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKML--Y 414 (461)
Q Consensus 341 ~~----~sRN~~~G~~l~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~l--y 414 (461)
|. .+||+..|. ...+.+.|.. .+.-.| +.+.+.++++|+ + +|+++.. +
T Consensus 237 ~~~~~l~~~d~~~g~-----~~vd~i~D~~--~~k~tG----~~~~~~A~~~gv--------------~-~P~~~~av~a 290 (474)
T 2iz1_A 237 ITKEVLKRKDDEGEG-----YIVDKILDKA--GNKGTG----KWTSESALDLGV--------------P-LPLITESVFA 290 (474)
T ss_dssp HHHHHTTCBCSSSSS-----BGGGGBCSCC--CCCSHH----HHHHHHHHHHTC--------------C-CHHHHHHHHH
T ss_pred hhhhHhhcCCCCCCh-----hHHHHHHHhh--cccchH----HHHHHHHHHcCC--------------C-CchHHHHHHH
Confidence 62 456765441 1121122111 112233 467788999995 7 8999884 6
Q ss_pred HHHhcCCCHHHHHHHHHhcc
Q 012547 415 KILIMRESPIQAILEALRDE 434 (461)
Q Consensus 415 ~il~~~~~~~~~~~~~l~~~ 434 (461)
+++...++......+++..+
T Consensus 291 r~~s~~k~~r~~~~~~~~g~ 310 (474)
T 2iz1_A 291 RYISTYKDERVKASKVLSGP 310 (474)
T ss_dssp HHHHHCHHHHHHHHHHCCCC
T ss_pred HHhhhhhhhhHHhhhccCCC
Confidence 67776655444444555544
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=165.39 Aligned_cols=219 Identities=15% Similarity=0.088 Sum_probs=156.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.|.+|||+|+||+.+|..|+++ | |+|++|++++++++.++ ++ +++.|.+++.
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~-G-----~~V~~~D~~~~kv~~L~---------~g--------~~pi~epgl~----- 63 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKH-G-----VDVLGVDINQQTIDKLQ---------NG--------QISIEEPGLQ----- 63 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHH---------TT--------CCSSCCTTHH-----
T ss_pred CccEEEeeCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHH---------CC--------CCCcCCCCHH-----
Confidence 4899999999999999999999 8 99999999999887643 32 2456666542
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh------------HHHHHHHHHHHhhccCCCC
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE------------TKEVFEEISRYWKERITVP 191 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~------------~~~vl~~i~~~l~~~~~~~ 191 (461)
|++.+.+.. ..+.+++|+ ++||+||+|||+.. +..+++.+.+++++ ++
T Consensus 64 ------~ll~~~~~~-------g~l~~ttd~----~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~---g~ 123 (431)
T 3ojo_A 64 ------EVYEEVLSS-------GKLKVSTTP----EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKK---GN 123 (431)
T ss_dssp ------HHHHHHHHT-------TCEEEESSC----CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCT---TE
T ss_pred ------HHHHhhccc-------CceEEeCch----hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCC---CC
Confidence 222221100 257888874 57999999999754 88888999999887 56
Q ss_pred EEEEEeecCccccccccccCCHHHHHHhHhCCC-CCcEEEEeCcchhHhhhc----cCceEEEEeCChhHHHHHHHHhcC
Q 012547 192 VIISLAKGVEAELEAVPRIITPTQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRR 266 (461)
Q Consensus 192 iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~-~~~v~vlsGPn~a~ev~~----g~~~~~~~~~~~~~~~~l~~ll~~ 266 (461)
+|| ..+++++. +.+.+++.+.+..|.. ...+.++++|.+..+... ..+..++.+++++..+.++++|+.
T Consensus 124 iVV-~~STV~pg-----tt~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~ 197 (431)
T 3ojo_A 124 TII-VESTIAPK-----TMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRT 197 (431)
T ss_dssp EEE-ECSCCCTT-----HHHHTHHHHHHTTTCCBTTTEEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHTT
T ss_pred EEE-EecCCChh-----HHHHHHHHHHHHcCCCcCCCeEEEECCCcCCCcchhhcccCCCEEEEeCCHHHHHHHHHHHHH
Confidence 555 55588876 3444445444434421 235789999988766542 224455667778888999999987
Q ss_pred CCceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhc
Q 012547 267 PHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 330 (461)
Q Consensus 267 ~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~ 330 (461)
-+-.+....|+...|+.+++-|.+ + +.-...++|+..+|+++|.|++.+.
T Consensus 198 ~~~~~~~~~~~~~AE~~Kl~~N~~-------------~-a~~Ia~~nE~~~l~e~~GiD~~~v~ 247 (431)
T 3ojo_A 198 FVQGEMIETDARTAEMSKLMENTY-------------R-DVNIALANELTKICNNLNINVLDVI 247 (431)
T ss_dssp TCCSCEEEEEHHHHHHHHHHHHHH-------------H-HHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhCCcEEeCCHHHHHHHHHHHHHH-------------H-HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 654444557888899999888872 1 2223478999999999999876553
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-16 Score=165.56 Aligned_cols=286 Identities=10% Similarity=-0.008 Sum_probs=171.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
..+|+|||+|+||++||..|+++ | ++|++|+|++++++.+.+ .. .++
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~-G-----~~V~v~dr~~~~~~~l~~--------~~-------------~~~------ 56 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADH-G-----FTVCAYNRTQSKVDHFLA--------NE-------------AKG------ 56 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSHHHHHHHH--------TT-------------TTT------
T ss_pred CCCEEEEeeHHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHc--------cc-------------ccC------
Confidence 35899999999999999999999 8 999999999987764221 00 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC---CCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~---aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.++..++|++++++. +|+||++||+ +.++++++++.+++++ +++||++++
T Consensus 57 -----------------------~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~l~~---g~iIId~s~ 110 (497)
T 2p4q_A 57 -----------------------KSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEK---GDIIIDGGN 110 (497)
T ss_dssp -----------------------SSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHHHHHHHGGGCCT---TCEEEECSC
T ss_pred -----------------------CCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHHHHHHHHHhCCC---CCEEEECCC
Confidence 035566788888776 9999999999 6999999999999887 689999998
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCce------EE
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT------VW 272 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~------v~ 272 (461)
|..... ..+.+.+.+ .|.......+..||..+. .|. .++++++++..+.++++|+..+.+ +.
T Consensus 111 ~~~~~~------~~l~~~l~~-~g~~~v~~pVsgg~~~a~---~G~--~im~gg~~e~~~~v~~ll~~~g~~~dGe~~v~ 178 (497)
T 2p4q_A 111 SHFPDS------NRRYEELKK-KGILFVGSGVSGGEEGAR---YGP--SLMPGGSEEAWPHIKNIFQSISAKSDGEPCCE 178 (497)
T ss_dssp CCHHHH------HHHHHHHHH-TTCEEEEEEEESHHHHHH---HCC--EEEEEECGGGHHHHHHHHHHHSCEETTEESCC
T ss_pred CChhHH------HHHHHHHHH-cCCceeCCCcccChhHhh---cCC--eEEecCCHHHHHHHHHHHHHhcCccCCCCceE
Confidence 876431 112232322 131111122333444432 343 345577788889999999876655 22
Q ss_pred ecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHH-hCCCchhhccC-h-h--hhhhhhccccchh
Q 012547 273 DNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHL-LAEEPEKLAGP-L-L--ADTYVTLLKGRNA 347 (461)
Q Consensus 273 ~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a-~G~~~~t~~g~-g-l--gDl~~T~~~sRN~ 347 (461)
...+.-...+.+.. .|.....+.+++.|+..++++ +|.+++++.++ . | |++ ++...+|+
T Consensus 179 ~vg~~G~g~~~Kl~--------------~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~--~S~l~~~~ 242 (497)
T 2p4q_A 179 WVGPAGAGHYVKMV--------------HNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVL--DSFLVEIT 242 (497)
T ss_dssp CCEETTHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTT--CBHHHHHH
T ss_pred EECCccHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCcc--ccHHHHHH
Confidence 22211111222222 244445667899999999999 79999887653 1 1 221 22234554
Q ss_pred HHHHHHhcCCChh-hHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHH-H-HHHHhcCCCHH
Q 012547 348 WYGQELAKGRLTL-DLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKM-L-YKILIMRESPI 424 (461)
Q Consensus 348 ~~G~~l~~g~~~~-~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~-l-y~il~~~~~~~ 424 (461)
. ..+.++.... -..+.+.....--| +.+...+.++++|+ + +|++.. + .+++...+...
T Consensus 243 ~--~~l~~~d~~~~~~vd~i~D~~~~Kg--tG~~~~~~A~~~Gv--------------~-~P~~~~av~ar~~s~~k~~r 303 (497)
T 2p4q_A 243 R--DILKFDDVDGKPLVEKIMDTAGQKG--TGKWTAINALDLGM--------------P-VTLIGEAVFARCLSALKNER 303 (497)
T ss_dssp H--HHHTCBCTTSSBGGGGSCCCCCCCS--HHHHHHHHHHHHTC--------------C-CHHHHHHHHHHHHHHCHHHH
T ss_pred H--HHHhcCCCCCccHHHHHHHhhccch--HHHHHHHHHHHcCC--------------C-CchHHHHHHHHHhhcchhhH
Confidence 2 3444432100 00111110000011 23457788999995 6 899887 4 45555544433
Q ss_pred HHHHHHHhcc
Q 012547 425 QAILEALRDE 434 (461)
Q Consensus 425 ~~~~~~l~~~ 434 (461)
....+++..+
T Consensus 304 ~~~~~~~~gp 313 (497)
T 2p4q_A 304 IRASKVLPGP 313 (497)
T ss_dssp HHHHHHCCCC
T ss_pred HHHhhhcCCC
Confidence 3443455444
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-15 Score=145.69 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=116.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+++ |++.+ ++|++|+|++++ .
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~-g~~~~-~~v~~~~~~~~~------------------------------~------- 44 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANA-NIIKK-ENLFYYGPSKKN------------------------------T------- 44 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHH-TSSCG-GGEEEECSSCCS------------------------------S-------
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCCCC-CeEEEEeCCccc------------------------------C-------
Confidence 47999999999999999999998 73221 589999998642 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
++..+++++++++++|+||+|||++.++++++++.+++ + ++.+|+.++|+..
T Consensus 45 ------------------------g~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~l-~---~~~vv~~~~gi~~ 96 (262)
T 2rcy_A 45 ------------------------TLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYL-S---SKLLISICGGLNI 96 (262)
T ss_dssp ------------------------SSEECSCHHHHHHHCSEEEECSCTTTHHHHHHHSGGGC-T---TCEEEECCSSCCH
T ss_pred ------------------------ceEEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHHHHhc-C---CCEEEEECCCCCH
Confidence 12345677788889999999999999999999999887 4 5789999999876
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeC--ChhHHHHHHHHhcCCCceEEecCCh
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
+ .+++.++.. .+ .+..+|+++..+..| .+.+..+. +++..+.++++|+..|..++..+|.
T Consensus 97 ~------------~l~~~~~~~-~~-~v~~~p~~p~~~~~g-~~~~~~~~~~~~~~~~~~~~ll~~~G~~~~~~~~~ 158 (262)
T 2rcy_A 97 G------------KLEEMVGSE-NK-IVWVMPNTPCLVGEG-SFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKD 158 (262)
T ss_dssp H------------HHHHHHCTT-SE-EEEEECCGGGGGTCE-EEEEEECTTCCHHHHHHHHHHHHTSEEEEECCGGG
T ss_pred H------------HHHHHhCCC-Cc-EEEECCChHHHHcCC-eEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHH
Confidence 4 366666531 13 356789998888777 44333332 5677899999999999855555554
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=147.61 Aligned_cols=250 Identities=14% Similarity=0.136 Sum_probs=156.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|+++ |. ++|++|+|++++++.+.++ +
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~-g~----~~v~~~~r~~~~~~~~~~~---------------------~---------- 44 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQ-GG----YRIYIANRGAEKRERLEKE---------------------L---------- 44 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CS----CEEEEECSSHHHHHHHHHH---------------------T----------
T ss_pred CEEEEECchHHHHHHHHHHHHC-CC----CeEEEECCCHHHHHHHHHh---------------------c----------
Confidence 7999999999999999999988 62 6899999998765532110 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
++..++|+++++ ++|+||+|||++.++++++++.+ + +++||++++|+.++
T Consensus 45 -----------------------g~~~~~~~~~~~-~~D~vi~~v~~~~~~~v~~~l~~--~----~~ivv~~~~g~~~~ 94 (263)
T 1yqg_A 45 -----------------------GVETSATLPELH-SDDVLILAVKPQDMEAACKNIRT--N----GALVLSVAAGLSVG 94 (263)
T ss_dssp -----------------------CCEEESSCCCCC-TTSEEEECSCHHHHHHHHTTCCC--T----TCEEEECCTTCCHH
T ss_pred -----------------------CCEEeCCHHHHh-cCCEEEEEeCchhHHHHHHHhcc--C----CCEEEEecCCCCHH
Confidence 233445666667 99999999999999999988765 2 47899999998763
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeC--ChhHHHHHHHHhcCCCceEEec-CChHHH
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN-GDLVTH 280 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~v~~s-~Di~gv 280 (461)
.+++.++.. .++ +...|+++..+..|... +..+. +++..+.++++|+..|+++++. +|
T Consensus 95 ------------~l~~~~~~~-~~~-v~~~~~~~~~~~~g~~~-i~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~---- 155 (263)
T 1yqg_A 95 ------------TLSRYLGGT-RRI-VRVMPNTPGKIGLGVSG-MYAEAEVSETDRRIADRIMKSVGLTVWLDDEE---- 155 (263)
T ss_dssp ------------HHHHHTTSC-CCE-EEEECCGGGGGTCEEEE-EECCTTSCHHHHHHHHHHHHTTEEEEECSSTT----
T ss_pred ------------HHHHHcCCC-CcE-EEEcCCHHHHHcCceEE-EEcCCCCCHHHHHHHHHHHHhCCCEEEeCChh----
Confidence 466666532 233 33479988877766432 23343 5677899999999999998777 55
Q ss_pred HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhccccchhHHHHHHh-cCCCh
Q 012547 281 EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELA-KGRLT 359 (461)
Q Consensus 281 e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~G~~l~-~g~~~ 359 (461)
.+.++.|+. |. ++.. ...+..++.|+ +++.|.+++++..+ .... . ...+..+. .|.+.
T Consensus 156 ----~~~~~~al~-g~---~~~~-~~~~~~~l~e~---~~~~G~~~~~~~~~-----~~~~--~--~~~~~~~~~~~~~~ 214 (263)
T 1yqg_A 156 ----KMHGITGIS-GS---GPAY-VFYLLDALQNA---AIRQGFDMAEARAL-----SLAT--F--KGAVALAEQTGEDF 214 (263)
T ss_dssp ----HHHHHHHHT-TS---HHHH-HHHHHHHHHHH---HHHTTCCHHHHHHH-----HHHH--H--HHHHHHHHHHCCCH
T ss_pred ----hccHHHHHH-cc---HHHH-HHHHHHHHHHH---HHHcCCCHHHHHHH-----HHHH--H--HHHHHHHHhcCCCH
Confidence 222222222 21 1111 23333444554 88899988766442 1000 0 00111111 23333
Q ss_pred hhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 360 LDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 360 ~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
.++.+.. +..|..+...+..+ ++.|+ + .|+.+++++.+..
T Consensus 215 ~~~~~~~----~~~~~~~~~~l~~l-~~~~~--------------~-~~~~~a~~~~~~~ 254 (263)
T 1yqg_A 215 EKLQKNV----TSKGGTTHEAVEAF-RRHRV--------------A-EAISEGVCACVRR 254 (263)
T ss_dssp HHHHHHT----CCTTSHHHHHHHHH-HHTTH--------------H-HHHHHHHHHHHHH
T ss_pred HHHHHhc----CCCChhHHHHHHHH-HHCCH--------------H-HHHHHHHHHHHHH
Confidence 2222221 23454454445444 77884 6 7999999998764
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-15 Score=144.12 Aligned_cols=239 Identities=14% Similarity=0.148 Sum_probs=150.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec--CchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR--PGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
|||+|||+|+||+++|..|+++ | ++|++|+| +++.++.+ .+
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~-g-----~~V~~~~~~~~~~~~~~~---------~~---------------------- 43 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR-G-----VEVVTSLEGRSPSTIERA---------RT---------------------- 43 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-T-----CEEEECCTTCCHHHHHHH---------HH----------------------
T ss_pred CeEEEEechHHHHHHHHHHHHC-C-----CeEEEeCCccCHHHHHHH---------HH----------------------
Confidence 6999999999999999999998 8 89999988 33332210 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
. ++. ++++++++++|+||+|||++...+.+.++.+.++ + ++|++ +++.
T Consensus 44 ------------~------------g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~~~~~~~~~----~-~vi~~-s~~~ 91 (264)
T 1i36_A 44 ------------V------------GVT--ETSEEDVYSCPVVISAVTPGVALGAARRAGRHVR----G-IYVDI-NNIS 91 (264)
T ss_dssp ------------H------------TCE--ECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTCC----S-EEEEC-SCCC
T ss_pred ------------C------------CCc--CCHHHHHhcCCEEEEECCCHHHHHHHHHHHHhcC----c-EEEEc-cCCC
Confidence 0 223 5566778899999999999865555666766543 4 66665 4655
Q ss_pred cccccccccCCHHHHHHhHhCCCC-CcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecC-ChHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPI-ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG-DLVT 279 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~-~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~-Di~g 279 (461)
+.. .+.+.+.++... ....+..+|..+. .+.+ +++++++. +.+++ |+..|.+++... ++-.
T Consensus 92 ~~~---------~~~l~~~~~~~g~~~~~v~~~~~~~~---~g~~--~~~~g~~~--~~~~~-l~~~g~~~~~~~~~~g~ 154 (264)
T 1i36_A 92 PET---------VRMASSLIEKGGFVDAAIMGSVRRKG---ADIR--IIASGRDA--EEFMK-LNRYGLNIEVRGREPGD 154 (264)
T ss_dssp HHH---------HHHHHHHCSSSEEEEEEECSCHHHHG---GGCE--EEEESTTH--HHHHG-GGGGTCEEEECSSSTTH
T ss_pred HHH---------HHHHHHHHhhCCeeeeeeeCCccccc---cCCe--EEecCCcH--HHhhh-HHHcCCeeEECCCCcCH
Confidence 431 134666654211 0122344454333 4443 34444433 78888 999998865544 4555
Q ss_pred HHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC--hhh-hhhhhcc--ccchhHHHHHHh
Q 012547 280 HEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP--LLA-DTYVTLL--KGRNAWYGQELA 354 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~--glg-Dl~~T~~--~sRN~~~G~~l~ 354 (461)
..|.+..-|.+. ..+..++.|+..+++++|.+++.+..+ ..| ++..++. .+|++..|.
T Consensus 155 ~~~~kl~~n~~~--------------~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~--- 217 (264)
T 1i36_A 155 ASAIKMLRSSYT--------------KGVSALLWETLTAAHRLGLEEDVLEMLEYTEGNDFRESAISRLKSSCIHAR--- 217 (264)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSCSSTHHHHHHHHHHHHHTHH---
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHhcCccHHHHHHHHhcCCCCcch---
Confidence 677766666532 345678999999999999987633111 112 2222211 122222211
Q ss_pred cCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 355 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 355 ~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
+ ++...+.++++++++ + + +|+++++|+++..
T Consensus 218 ----------------~--~~~~~~~~~~~a~~~-v--------------~-~p~~~~v~~~~~~ 248 (264)
T 1i36_A 218 ----------------R--RYEEMKEVQDMLAEV-I--------------D-PVMPTCIIRIFDK 248 (264)
T ss_dssp ----------------H--HHHHHHHHHHHHHTT-S--------------C-CSHHHHHHHHHHH
T ss_pred ----------------h--hHHHHHHHHHHHHHh-c--------------C-chHHHHHHHHHHH
Confidence 1 456667889999999 8 5 8999999999874
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.8e-16 Score=159.88 Aligned_cols=211 Identities=14% Similarity=0.073 Sum_probs=147.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+.+|..|++ | ++|++|+|++++++.+++.+. +.+.++..
T Consensus 1 MkI~VIG~G~vG~~~A~~La~--G-----~~V~~~d~~~~~~~~l~~~~~-----------------~i~e~~l~----- 51 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL--Q-----NEVTIVDILPSKVDKINNGLS-----------------PIQDEYIE----- 51 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT--T-----SEEEEECSCHHHHHHHHTTCC-----------------SSCCHHHH-----
T ss_pred CEEEEECCCHHHHHHHHHHhC--C-----CEEEEEECCHHHHHHHHcCCC-----------------CcCCCCHH-----
Confidence 799999999999999999996 5 899999999988776432210 11111110
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-----------hHHHHHHHHHHHhhccCCCCE
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVPV 192 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-----------~~~~vl~~i~~~l~~~~~~~i 192 (461)
++++.. ...+.+++|++++++++|+||+|||+. +++++++.+.+ +++ +++
T Consensus 52 ------~~~~~~---------~~~l~~t~~~~~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~---~~i 112 (402)
T 1dlj_A 52 ------YYLKSK---------QLSIKATLDSKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNS---HAT 112 (402)
T ss_dssp ------HHHHHS---------CCCEEEESCHHHHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCS---SCE
T ss_pred ------HHHHhc---------cCcEEEeCCHHHHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCC---CCE
Confidence 111110 014678889888889999999999987 69999999999 876 677
Q ss_pred EEE-EeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhc----cCceEEEEeCCh-------hHHHHH
Q 012547 193 IIS-LAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAE-------KWRKPL 260 (461)
Q Consensus 193 IIs-~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~----g~~~~~~~~~~~-------~~~~~l 260 (461)
||. .+++.... +.+.+.++. . .+.++|.+..+... ..+..+++++.+ +.++.+
T Consensus 113 VV~~ST~~~g~~-----------~~l~~~~~~--~--~v~~~Pe~~~~G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~ 177 (402)
T 1dlj_A 113 LIIKSTIPIGFI-----------TEMRQKFQT--D--RIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPKVKADAEKF 177 (402)
T ss_dssp EEECSCCCTTHH-----------HHHHHHTTC--S--CEEECCCCCCTTSTTHHHHSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred EEEeCCCCccHH-----------HHHHHHhCC--C--eEEECCccccCcchhhcccCCCEEEEeCCCcccchhHHHHHHH
Confidence 765 45444332 456666653 2 35688887655431 123334555544 667888
Q ss_pred HHHhcCCCce---EEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 261 AKFLRRPHFT---VWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 261 ~~ll~~~g~~---v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
.++|...+++ ++...|+...||.+++.|.+- +.....++|+..+|+++|.+++++..
T Consensus 178 ~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~--------------a~~ia~~nE~~~l~~~~Gid~~~v~~ 237 (402)
T 1dlj_A 178 ALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYL--------------ALRVAYFNELDTYAESRKLNSHMIIQ 237 (402)
T ss_dssp HHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhhhhccCCceEEecChHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 8999765554 566788999999999999841 23335789999999999999877654
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=158.77 Aligned_cols=212 Identities=15% Similarity=0.153 Sum_probs=149.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+|||+|||+|+||+++|..|++ | ++|++|++++++++.++ ++ .++.+.+++.
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~--G-----~~V~~~D~~~~~v~~l~---------~g--------~~~i~e~~l~--- 87 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ--N-----HEVVALDIVQAKVDMLN---------QK--------ISPIVDKEIQ--- 87 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT--T-----SEEEEECSCHHHHHHHH---------TT--------CCSSCCHHHH---
T ss_pred CCCEEEEECcCHHHHHHHHHHHc--C-----CeEEEEecCHHHhhHHh---------cc--------CCccccccHH---
Confidence 45899999999999999999985 5 99999999998877643 22 1344555432
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-----------hHHHHHHHHHHHhhccCCC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITV 190 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-----------~~~~vl~~i~~~l~~~~~~ 190 (461)
+++.++ ..++.+++|+++++++||+||+|||+. +++++++.+.+ +++ +
T Consensus 88 --------~ll~~~---------~~~l~~ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~---g 146 (432)
T 3pid_A 88 --------EYLAEK---------PLNFRATTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INP---N 146 (432)
T ss_dssp --------HHHHHS---------CCCEEEESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCT---T
T ss_pred --------HHHhhc---------cCCeEEEcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCC---C
Confidence 122211 025789999999999999999999985 68999999999 877 6
Q ss_pred CEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhc----cCceEEEEeCChhHHHHHHHHhcC
Q 012547 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRR 266 (461)
Q Consensus 191 ~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~----g~~~~~~~~~~~~~~~~l~~ll~~ 266 (461)
++|| ...++.+.+ .+.+.+.++. . .+.+.|.+..+... -.+..++++++++.++.+..+|..
T Consensus 147 ~iVV-~~STv~pgt---------t~~l~~~l~~--~--~v~~sPe~~~~G~A~~~~l~p~rIvvG~~~~~~~~~~~ll~~ 212 (432)
T 3pid_A 147 AVMI-IKSTIPVGF---------TRDIKERLGI--D--NVIFSPEFLREGRALYDNLHPSRIVIGERSARAERFADLLKE 212 (432)
T ss_dssp SEEE-ECSCCCTTH---------HHHHHHHHTC--C--CEEECCCCCCTTSHHHHHHSCSCEEESSCSHHHHHHHHHHHH
T ss_pred cEEE-EeCCCChHH---------HHHHHHHHhh--c--cEeecCccCCcchhhhcccCCceEEecCCHHHHHHHHHHHHh
Confidence 7666 444677652 2344555542 1 24568888665442 224445677777778888888864
Q ss_pred C----CceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhc
Q 012547 267 P----HFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 330 (461)
Q Consensus 267 ~----g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~ 330 (461)
. +.++.. .|+...|+.+++-|.+- +.....++|+..+|+++|.|++.+.
T Consensus 213 ~~~~~~~~v~~-~~~~~AE~~Kl~~N~~~--------------a~~Ia~~nEl~~lae~~GiD~~~v~ 265 (432)
T 3pid_A 213 GAIKQDIPTLF-TDSTEAEAIKLFANTYL--------------ALRVAYFNELDSYAESQGLNSKQII 265 (432)
T ss_dssp HCSSSSCCEEE-CCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hhccCCCeEEe-cCccHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 2 234444 57888899988887731 3334578999999999999887654
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=152.08 Aligned_cols=257 Identities=16% Similarity=0.175 Sum_probs=157.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.||+|||.|.||..||..|+++ | |+|++|+|++++++.+ ..
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l--------------------------~~------- 46 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEA-G-----YELVVWNRTASKAEPL--------------------------TK------- 46 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEC-------CTT--------------------------TT-------
T ss_pred CcEEEEecHHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHH--------------------------HH-------
Confidence 4899999999999999999999 8 9999999998765431 10
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.+....+++.++++++|+||+++|.. .+++++ ..+.+.+.+ ++++|.++ .+.
T Consensus 47 ----------------------~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~~---~~iiid~s-T~~ 100 (297)
T 4gbj_A 47 ----------------------LGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVEKLGK---DGVHVSMS-TIS 100 (297)
T ss_dssp ----------------------TTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHCT---TCEEEECS-CCC
T ss_pred ----------------------cCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHhhcCC---CeEEEECC-CCC
Confidence 13456778889999999999999965 455554 557777776 67777766 344
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHH-H
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT-H 280 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g-v 280 (461)
+.. ...+.+.+.+ .|.......+..||..+. .|..+ ++++++++..++++.+|+.-+-+++...+..| -
T Consensus 101 p~~-----~~~~~~~~~~-~g~~~ldapVsGg~~~a~---~g~l~-im~gG~~~~~~~~~~~l~~~g~~i~~~g~~~G~g 170 (297)
T 4gbj_A 101 PET-----SRQLAQVHEW-YGAHYVGAPIFARPEAVR---AKVGN-ICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAA 170 (297)
T ss_dssp HHH-----HHHHHHHHHH-TTCEEEECCEECCHHHHH---HTCCE-EEEEECHHHHHHHHHHHHTTCSEEEECCSCTTHH
T ss_pred hHH-----HHHHHHHHHh-cCCceecCCcCCCccccc---cccce-eecccchhHHHHHHHHHHHhhCCeEEecCCccHH
Confidence 441 2222333322 121111112334444433 33322 35678888899999999999988877665433 3
Q ss_pred HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC---hhhhhhhhccccchhHHHHHHhcCC
Q 012547 281 EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP---LLADTYVTLLKGRNAWYGQELAKGR 357 (461)
Q Consensus 281 e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~---glgDl~~T~~~sRN~~~G~~l~~g~ 357 (461)
+..+++-|. -......++.|...+++++|.+++++.+. +.+..... + .++..+..+.
T Consensus 171 ~~~Kl~~N~--------------~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~----~--~~~~~~~~~~ 230 (297)
T 4gbj_A 171 NVIKLAGNF--------------MIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIF----Q--NYGKLVASNT 230 (297)
T ss_dssp HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHH----H--HHHHHHHHTC
T ss_pred HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchh----h--ccCccccCCC
Confidence 444444444 22344568899999999999999987642 22211111 1 1222332221
Q ss_pred ChhhHhhhhcCCC-cc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 358 LTLDLGDSIKGKG-MI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 358 ~~~~~~~~~~~~~-~v-EG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
- ...+ ++ -.....+.+.+++++.|+ + +|+.+.+++++.
T Consensus 231 ~--------~p~~f~~~l~~KDl~l~~~~A~~~g~--------------~-~p~~~~~~~~~~ 270 (297)
T 4gbj_A 231 Y--------EPVAFRFPLGLKDINLTLQTASDVNA--------------P-MPFADIIRNRFI 270 (297)
T ss_dssp C--------CSCSSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHH
T ss_pred C--------CCccchhHHHHHHHHHHHHHHHHhCC--------------C-ChHHHHHHHHHH
Confidence 0 0000 11 234556678999999995 6 899999888764
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=151.34 Aligned_cols=201 Identities=15% Similarity=0.160 Sum_probs=135.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.|+||++||.|.||..||..|.++ | |+|++|+|++++++.+.+
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~-G-----~~v~v~dr~~~~~~~l~~------------------------------- 44 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKA-G-----YLLNVFDLVQSAVDGLVA------------------------------- 44 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHH-------------------------------
T ss_pred CcCEEEEeeehHHHHHHHHHHHhC-C-----CeEEEEcCCHHHHHHHHH-------------------------------
Confidence 456999999999999999999999 8 999999999876653110
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHHH---HHHHhhccCCCCEEEEEe
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEE---ISRYWKERITVPVIISLA 197 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~~---i~~~l~~~~~~~iIIs~t 197 (461)
.+.....+++++++.+|+||+|+|. .++++++.. +.+.+.+ ++++|.++
T Consensus 45 ------------------------~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~---g~iiId~s 97 (300)
T 3obb_A 45 ------------------------AGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAP---GTLVLECS 97 (300)
T ss_dssp ------------------------TTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC----CEEEECS
T ss_pred ------------------------cCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhhhhcCCC---CCEEEECC
Confidence 0345678899999999999999996 578888755 4455555 67888776
Q ss_pred ecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCCh
Q 012547 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
. +.++. ...+.+.+.+ .|.......+..||.-|. .|..+ ++++++++..++++.+|+.-+-++++..+.
T Consensus 98 T-~~p~~-----~~~~a~~~~~-~G~~~lDaPVsGg~~~A~---~G~L~-imvGG~~~~~~~~~p~l~~~g~~i~~~G~~ 166 (300)
T 3obb_A 98 T-IAPTS-----ARKIHAAARE-RGLAMLDAPVSGGTAGAA---AGTLT-FMVGGDAEALEKARPLFEAMGRNIFHAGPD 166 (300)
T ss_dssp C-CCHHH-----HHHHHHHHHT-TTCEEEECCEESCHHHHH---HTCEE-EEEESCHHHHHHHHHHHHHHEEEEEEEEST
T ss_pred C-CCHHH-----HHHHHHHHHH-cCCEEEecCCCCCHHHHH---hCCEE-EEEeCCHHHHHHHHHHHHHhCCCEEEeCCc
Confidence 3 44431 1222222222 121111112445555554 34333 356888888999999998888777777665
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 278 VTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 278 ~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
-.-...+++-|.+ ......++.|...++++.|.+++.+.+
T Consensus 167 G~g~~~Kl~~N~l--------------~~~~~~a~aEa~~la~~~Gld~~~~~~ 206 (300)
T 3obb_A 167 GAGQVAKVCNNQL--------------LAVLMIGTAEAMALGVANGLEAKVLAE 206 (300)
T ss_dssp THHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3334455444442 233446889999999999999988754
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-15 Score=142.49 Aligned_cols=169 Identities=14% Similarity=0.180 Sum_probs=127.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..|||+|||+|+||+++|..|+++ | ++|++|+|+++
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~-g-----~~V~~~~~~~~-------------------------------------- 53 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIA-G-----HEVTYYGSKDQ-------------------------------------- 53 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECTTCC--------------------------------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHH--------------------------------------
Confidence 347999999999999999999998 8 89999977631
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
++++||+||+|||+++++++++++.++++ +++++++++|++
T Consensus 54 -----------------------------------~~~~aD~vi~av~~~~~~~v~~~l~~~~~----~~~vi~~~~g~~ 94 (209)
T 2raf_A 54 -----------------------------------ATTLGEIVIMAVPYPALAALAKQYATQLK----GKIVVDITNPLN 94 (209)
T ss_dssp -----------------------------------CSSCCSEEEECSCHHHHHHHHHHTHHHHT----TSEEEECCCCBC
T ss_pred -----------------------------------HhccCCEEEEcCCcHHHHHHHHHHHHhcC----CCEEEEECCCCC
Confidence 24578999999999999999999988776 479999999997
Q ss_pred -ccccc--ccccCCHHHHHHhHhCCCCCcEE----EEeCcchhHhhhcc-CceEEEE-eCChhHHHHHHHHhcCCCceEE
Q 012547 202 -AELEA--VPRIITPTQMINRATGVPIENIL----YLGGPNIASEIYNK-EYANARI-CGAEKWRKPLAKFLRRPHFTVW 272 (461)
Q Consensus 202 -~~~~~--~~~~~~~se~i~~~lg~~~~~v~----vlsGPn~a~ev~~g-~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~ 272 (461)
..... .++...+++.+++.++. .++. .++||+++.+...+ .+..+.+ +.+++..+.++++|+..|++++
T Consensus 95 ~~~~~~l~~~~~~~~~~~l~~~l~~--~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g~~~~~~~~v~~ll~~~G~~~~ 172 (209)
T 2raf_A 95 FDTWDDLVVPADSSAAQELQQQLPD--SQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGNDDSAKQRFTRALADSPLEVK 172 (209)
T ss_dssp TTTSSSBSSCTTCCHHHHHHHHCTT--SEEEECSTTSCHHHHHHSEETTTEECEEEEEESCHHHHHHHHHHTTTSSCEEE
T ss_pred ccccccccCCCCCcHHHHHHHHCCC--CcEEEeeecccHhhccccccCCCCCceeEEcCCCHHHHHHHHHHHHHcCCceE
Confidence 32000 00234567888887752 2321 12389999877655 2333334 4456788999999999999999
Q ss_pred ecCChHHHHHHHHHHHHHHHHHhhcc
Q 012547 273 DNGDLVTHEVMGGLKNVYAIGAALTN 298 (461)
Q Consensus 273 ~s~Di~gve~~galKNv~Ai~~Gi~~ 298 (461)
...| ++.+..+||+.+++++++.
T Consensus 173 ~~~~---i~~a~~~K~i~~l~~~~~~ 195 (209)
T 2raf_A 173 DAGK---LKRARELEAMGFMQMTLAA 195 (209)
T ss_dssp EEES---GGGHHHHHHHHHHHHHHHH
T ss_pred eCCC---HhHHHHhcchHHHHHHHHH
Confidence 8888 4567788999999888875
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=159.65 Aligned_cols=226 Identities=13% Similarity=0.110 Sum_probs=153.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+|||+|||+|+||+++|..|+++ | ++++|++|+|++++++.++ +++ .+.+.+++.
T Consensus 4 ~~mkI~VIG~G~mG~~lA~~La~~-g---~G~~V~~~d~~~~~~~~l~---------~g~--------~~i~e~~l~--- 59 (467)
T 2q3e_A 4 EIKKICCIGAGYVGGPTCSVIAHM-C---PEIRVTVVDVNESRINAWN---------SPT--------LPIYEPGLK--- 59 (467)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHH-C---TTSEEEEECSCHHHHHHHT---------SSS--------CSSCCTTHH---
T ss_pred CccEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEEECCHHHHHHHh---------CCC--------CCcCCCCHH---
Confidence 358999999999999999999987 4 1289999999998776533 221 233333321
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh---------------HHHHHHHHHHHhhc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE---------------TKEVFEEISRYWKE 186 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~---------------~~~vl~~i~~~l~~ 186 (461)
+++.++. ..++.+++|+++++++||+||+|||+.. +.++++++.+++++
T Consensus 60 --------~~~~~~~--------~~~~~~t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~ 123 (467)
T 2q3e_A 60 --------EVVESCR--------GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNG 123 (467)
T ss_dssp --------HHHHHHB--------TTTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCS
T ss_pred --------HHHHHhh--------cCCEEEECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCC
Confidence 1111100 0147788999888999999999998533 67888999988876
Q ss_pred cCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhc----cCceEEEEeC-----ChhHH
Q 012547 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICG-----AEKWR 257 (461)
Q Consensus 187 ~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~----g~~~~~~~~~-----~~~~~ 257 (461)
+++||..+ ++.+. +...+.+.+.+. +.....+.+.++|.++.+... ..+..+++++ +++..
T Consensus 124 ---g~iVV~~S-Tv~~g-----~~~~l~~~l~~~-~~~~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~ 193 (467)
T 2q3e_A 124 ---YKIVTEKS-TVPVR-----AAESIRRIFDAN-TKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAV 193 (467)
T ss_dssp ---EEEEEECS-CCCTT-----HHHHHHHHHHHT-CCTTCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHH
T ss_pred ---CCEEEECC-cCCch-----HHHHHHHHHHHh-CCCCCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHH
Confidence 56666544 44444 122234444442 211234567899998765432 1233344554 45678
Q ss_pred HHHHHHhcCC-CceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 258 KPLAKFLRRP-HFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 258 ~~l~~ll~~~-g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
+.++++|+.. +..+....|+...||.|.+-|.+ .++....++|+..+|+++|.+++++.+
T Consensus 194 ~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~--------------~a~~ia~~nE~~~l~~~~Gid~~~v~~ 254 (467)
T 2q3e_A 194 QALCAVYEHWVPREKILTTNTWSSELSKLAANAF--------------LAQRISSINSISALCEATGADVEEVAT 254 (467)
T ss_dssp HHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 8999999887 65566667888889999888873 134456889999999999999887654
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.9e-15 Score=152.59 Aligned_cols=241 Identities=15% Similarity=0.107 Sum_probs=157.2
Q ss_pred ccCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhh
Q 012547 13 SSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEH 92 (461)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~ 92 (461)
||.-+-|||+|-+- ....+.+|+|||+|++|..+|..||+. | ++|+.+|.++++++.+|
T Consensus 3 ~~~~~~~~~~~~~p------------~~~~m~~IaViGlGYVGLp~A~~~A~~-G-----~~V~g~Did~~kV~~ln--- 61 (444)
T 3vtf_A 3 SSHHHHHHSSGLVP------------RGSHMASLSVLGLGYVGVVHAVGFALL-G-----HRVVGYDVNPSIVERLR--- 61 (444)
T ss_dssp ----------CCCC------------TTCCCCEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSCHHHHHHHH---
T ss_pred cccccccccCCcCC------------CCCCCCEEEEEccCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHHHH---
Confidence 56677888888653 122456999999999999999999999 8 99999999999887643
Q ss_pred HHHHHhhhhhhHHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc--
Q 012547 93 LFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-- 170 (461)
Q Consensus 93 l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-- 170 (461)
++. .+.+.|++. |++.+.+.. .++.+++|.++++++||++|+|||.
T Consensus 62 ------~G~--------~pi~Epgl~-----------ell~~~~~~-------g~l~~tt~~~~ai~~ad~~~I~VpTP~ 109 (444)
T 3vtf_A 62 ------AGR--------PHIYEPGLE-----------EALGRALSS-------GRLSFAESAEEAVAATDATFIAVGTPP 109 (444)
T ss_dssp ------TTC--------CSSCCTTHH-----------HHHHHHHHT-------TCEEECSSHHHHHHTSSEEEECCCCCB
T ss_pred ------CCC--------CCCCCCCHH-----------HHHHHHHHc-------CCeeEEcCHHHHHhcCCceEEEecCCC
Confidence 332 344555432 333332211 2688999999999999999999974
Q ss_pred --------hhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCH-HHHHHhHhCCCCCcEEEEeCcchhHhhh
Q 012547 171 --------TETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITP-TQMINRATGVPIENILYLGGPNIASEIY 241 (461)
Q Consensus 171 --------~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~-se~i~~~lg~~~~~v~vlsGPn~a~ev~ 241 (461)
.+++++++.|.+++++..++++|| .-..+.+. +...+ ...+.+..+ ...+.+.+.|.+..+..
T Consensus 110 ~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV-~eSTVppG-----tte~~~~~~l~~~~~--~~~f~v~~~PErl~eG~ 181 (444)
T 3vtf_A 110 APDGSADLRYVEAAARAVGRGIRAKGRWHLVV-VKSTVPPG-----TTEGLVARAVAEEAG--GVKFSVASNPEFLREGS 181 (444)
T ss_dssp CTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEE-ECSCCCTT-----TTTTHHHHHHHTTTT--TCCCEEEECCCCCCTTS
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEE-EeCCCCCc-----hHHHHHHHHHHHhCC--CCCceeecCcccccCCc
Confidence 378999999999886421134443 44455555 33433 334444333 24567889999987654
Q ss_pred c----cCceEEEEe-CChhHHHHHHHHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHH
Q 012547 242 N----KEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMV 316 (461)
Q Consensus 242 ~----g~~~~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~ 316 (461)
. ..+..++++ .++...+.+.+++....-.+. ..|+...|+.+.+-|.+ ++.-+ ..++|+.
T Consensus 182 a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~-~~~~~~AE~~Kl~eN~~-------------ravnI-a~~NEla 246 (444)
T 3vtf_A 182 ALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKL-VMKPREAELVKYASNVF-------------LALKI-SFANEVG 246 (444)
T ss_dssp HHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEE-EECHHHHHHHHHHHHHH-------------HHHHH-HHHHHHH
T ss_pred cccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEE-EechhHHHHHHHHHHHH-------------HHHHH-HHHHHHH
Confidence 2 123444554 455667888888876554443 46788999999888872 21222 3579999
Q ss_pred HHHHHhCCCchhh
Q 012547 317 FITHLLAEEPEKL 329 (461)
Q Consensus 317 ~l~~a~G~~~~t~ 329 (461)
.+|+++|+|...+
T Consensus 247 ~ice~~GiDv~eV 259 (444)
T 3vtf_A 247 LLAKRLGVDTYRV 259 (444)
T ss_dssp HHHHHTTCCHHHH
T ss_pred HHHHHcCCCHHHH
Confidence 9999999986544
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-15 Score=157.41 Aligned_cols=276 Identities=13% Similarity=0.056 Sum_probs=165.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+|+|+|||+|.||++||..|+++ | ++|++|+|++++++.+.++ + ..+
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~-G-----~~V~v~dr~~~~~~~l~~~--------g-------------~~g----- 50 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDH-G-----FVVCAFNRTVSKVDDFLAN--------E-------------AKG----- 50 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHHHT--------T-------------TTT-----
T ss_pred CCCEEEEEChhHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHhc--------c-------------cCC-----
Confidence 458999999999999999999999 8 9999999999876642211 0 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc---CCCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~---~aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
..+..+++++++++ ++|+||++||+ +.++++++++.+++++ +++||.++
T Consensus 51 ------------------------~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~L~~---g~iIId~s 103 (484)
T 4gwg_A 51 ------------------------TKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDT---GDIIIDGG 103 (484)
T ss_dssp ------------------------SSCEECSSHHHHHHTBCSSCEEEECSCSSHHHHHHHHHHGGGCCT---TCEEEECS
T ss_pred ------------------------CceeccCCHHHHHhhccCCCEEEEecCChHHHHHHHHHHHHhcCC---CCEEEEcC
Confidence 13455678888776 59999999998 5899999999999887 78999988
Q ss_pred ecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCCh
Q 012547 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
++....+ ....+.+.+ .|.......+..||..+. .|. .++++++++..+.++.+|+..+.++ .+|.
T Consensus 104 t~~~~~t------~~~~~~l~~-~Gi~fvd~pVsGg~~gA~---~G~--~im~GG~~ea~~~v~pll~~ig~~v--~~~~ 169 (484)
T 4gwg_A 104 NSEYRDT------TRRCRDLKA-KGILFVGSGVSGGEEGAR---YGP--SLMPGGNKEAWPHIKTIFQGIAAKV--GTGE 169 (484)
T ss_dssp CCCHHHH------HHHHHHHHH-TTCEEEEEEEESHHHHHH---HCC--EEEEEECGGGHHHHHHHHHHHSCBC--TTSC
T ss_pred CCCchHH------HHHHHHHHh-hccccccCCccCCHHHHh---cCC--eeecCCCHHHHHHHHHHHHHhcCcc--cCCC
Confidence 8765442 112222322 132111223344455443 343 4456778888888999887655433 1121
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHH-hCCCchhhccC-h-hhhhhhhccccchhHHHHHHh
Q 012547 278 VTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHL-LAEEPEKLAGP-L-LADTYVTLLKGRNAWYGQELA 354 (461)
Q Consensus 278 ~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a-~G~~~~t~~g~-g-lgDl~~T~~~sRN~~~G~~l~ 354 (461)
.++.++|-. --+-...++ .|.....+.++++|+..+++. +|.+++++.+. . |..-...+...+|+. ..+.
T Consensus 170 ~~~~~~G~~--Gag~~vKmv---~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e~~~--~~l~ 242 (484)
T 4gwg_A 170 PCCDWVGDE--GAGHFVKMV---HNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITA--NILK 242 (484)
T ss_dssp BSBCCCEET--THHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHH--HHHH
T ss_pred ceEEEECCc--cHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHHHHHH--HHHh
Confidence 121121100 001111222 233334556789999999999 99999877542 1 100011111233433 2333
Q ss_pred c----CC-ChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCc-HHHHHHHHHh
Q 012547 355 K----GR-LTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCP-ILKMLYKILI 418 (461)
Q Consensus 355 ~----g~-~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~P-i~~~ly~il~ 418 (461)
+ |. .++++.+.. ++.-||.-|+.. +.++| ++ +| |.++||.-+.
T Consensus 243 ~~D~~g~~~ld~i~d~~--~~kgtG~wt~~~----A~~~g--------------vp-~p~i~~av~~R~~ 291 (484)
T 4gwg_A 243 FQDTDGKHLLPKIRDSA--GQKGTGKWTAIS----ALEYG--------------VP-VTLIGEAVFARCL 291 (484)
T ss_dssp CBCTTSSBSGGGSCCCC--CSSCTTHHHHHH----HHHHT--------------CC-CHHHHHHHHHHHH
T ss_pred cCCccCCccHHHHhccc--cCcchHHHHHHH----HHHcC--------------CC-chHHHHHHHHHHH
Confidence 2 32 233343322 345688877655 44778 47 79 6777876443
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-15 Score=141.91 Aligned_cols=178 Identities=14% Similarity=0.164 Sum_probs=126.0
Q ss_pred HHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEE-EecCchhhhhhhhhhHHHHHhhhhhhHHhhhhc
Q 012547 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRPGRSVDRATAEHLFEVINSREDVLRRLIRR 110 (461)
Q Consensus 32 ~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l-~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n 110 (461)
.++++.|. +|||+|||+|+||+++|..|+++ | ++|++ |+|++++++.+.++
T Consensus 15 ~~~~~~m~---mmkI~IIG~G~mG~~la~~l~~~-g-----~~V~~v~~r~~~~~~~l~~~------------------- 66 (220)
T 4huj_A 15 TENLYFQS---MTTYAIIGAGAIGSALAERFTAA-Q-----IPAIIANSRGPASLSSVTDR------------------- 66 (220)
T ss_dssp --CTTGGG---SCCEEEEECHHHHHHHHHHHHHT-T-----CCEEEECTTCGGGGHHHHHH-------------------
T ss_pred ccchhhhc---CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCCHHHHHHHHHH-------------------
Confidence 34555443 48999999999999999999999 8 89999 99998776542110
Q ss_pred ccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCC
Q 012547 111 CAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV 190 (461)
Q Consensus 111 ~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~ 190 (461)
+ ++..+.+..+++.++|+||+|||++.++++++++.+ ++ +
T Consensus 67 --~---------------------------------g~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~-~~----~ 106 (220)
T 4huj_A 67 --F---------------------------------GASVKAVELKDALQADVVILAVPYDSIADIVTQVSD-WG----G 106 (220)
T ss_dssp --H---------------------------------TTTEEECCHHHHTTSSEEEEESCGGGHHHHHTTCSC-CT----T
T ss_pred --h---------------------------------CCCcccChHHHHhcCCEEEEeCChHHHHHHHHHhhc-cC----C
Confidence 0 011122334557899999999999999999999887 53 5
Q ss_pred CEEEEEeecCccccccc--cccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhc-cC-----ceEEEE-eCChhHHHHHH
Q 012547 191 PVIISLAKGVEAELEAV--PRIITPTQMINRATGVPIENILYLGGPNIASEIYN-KE-----YANARI-CGAEKWRKPLA 261 (461)
Q Consensus 191 ~iIIs~tkGi~~~~~~~--~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~-g~-----~~~~~~-~~~~~~~~~l~ 261 (461)
++||++++|++...... .+....++.+++.++. .+ ++...|++...+.. +. +..+++ +.+++..+.++
T Consensus 107 ~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~--~~-vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g~~~~~~~~v~ 183 (220)
T 4huj_A 107 QIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPG--AK-VVKAFNTLPAAVLAADPDKGTGSRVLFLSGNHSDANRQVA 183 (220)
T ss_dssp CEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTT--CE-EEEESCSSCHHHHTSCSBCSSCEEEEEEEESCHHHHHHHH
T ss_pred CEEEEcCCCCCcccccccccCCCcHHHHHHHHCCC--CC-EEECCCCCCHHHhhhCcccCCCCeeEEEeCCCHHHHHHHH
Confidence 79999999996110000 0234567888888862 23 56778887766655 21 233333 55678889999
Q ss_pred HHhcCCCceEEecCChHHH
Q 012547 262 KFLRRPHFTVWDNGDLVTH 280 (461)
Q Consensus 262 ~ll~~~g~~v~~s~Di~gv 280 (461)
++|+..|++++...++...
T Consensus 184 ~l~~~~G~~~~~~G~l~~a 202 (220)
T 4huj_A 184 ELISSLGFAPVDLGTLAAS 202 (220)
T ss_dssp HHHHHTTCEEEECCSHHHH
T ss_pred HHHHHhCCCeEeeCChhhc
Confidence 9999999999998886544
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-14 Score=145.35 Aligned_cols=190 Identities=13% Similarity=0.094 Sum_probs=127.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|.||..+|..|+++ | ++|++|+|++++++.+.+
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~-G-----~~V~v~dr~~~~~~~l~~-------------------------------- 63 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKG-G-----HECVVYDLNVNAVQALER-------------------------------- 63 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHT--------------------------------
T ss_pred CCEEEEECchHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHH--------------------------------
Confidence 48999999999999999999999 8 999999999876553110
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCC---CEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA---DIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~a---DiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.++..+++++++++++ |+||+|||+..++++++++.+.+++ +++||.++++
T Consensus 64 -----------------------~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl~~l~~~l~~---g~iiId~st~ 117 (358)
T 4e21_A 64 -----------------------EGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSMLQRMTPLLAA---NDIVIDGGNS 117 (358)
T ss_dssp -----------------------TTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHHHHHGGGCCT---TCEEEECSSC
T ss_pred -----------------------CCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHhhCCC---CCEEEeCCCC
Confidence 0233456788888888 9999999999999999999998887 7888888766
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCC-----------
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPH----------- 268 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g----------- 268 (461)
..... ..+.+.+.+ .+.......+..||..+. .|. .++++++++..+.++.+|...+
T Consensus 118 ~~~~~------~~~~~~l~~-~g~~~vdapVsGg~~~a~---~G~--~im~GG~~~a~~~~~~ll~~lg~~~~~~~~~~~ 185 (358)
T 4e21_A 118 HYQDD------IRRADQMRA-QGITYVDVGTSGGIFGLE---RGY--CLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPG 185 (358)
T ss_dssp CHHHH------HHHHHHHHT-TTCEEEEEEEECGGGHHH---HCC--EEEEESCHHHHHHTHHHHHHHSCCGGGSCCCTT
T ss_pred ChHHH------HHHHHHHHH-CCCEEEeCCCCCCHHHHh---cCC--eeeecCCHHHHHHHHHHHHHhccccccCccccc
Confidence 53321 111222222 121111233445565554 343 3456788887788888876544
Q ss_pred ---------ceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHh
Q 012547 269 ---------FTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLL 322 (461)
Q Consensus 269 ---------~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~ 322 (461)
-.+....+.-.-++.+.+.|.+- .....++.|...++++.
T Consensus 186 ~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~--------------~~~i~~~aE~~~la~~a 234 (358)
T 4e21_A 186 REKREGTAELGYLHCGPSGAGHFVKMVHNGIE--------------YGLMAAYAEGLNILHHA 234 (358)
T ss_dssp GGGCCSSGGGTEEEEESTTHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHTT
T ss_pred ccccccccccceEEECCccHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhc
Confidence 23444445434556666665521 22234678888888876
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.2e-15 Score=141.13 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=121.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh--hhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS--VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~--~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
..|||+|||+|+||+++|..|+++ | ++|++|+|+++. ++....+ ++ +.. ...+.
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~-G-----~~V~~~~r~~~~~~~~~~~~~-----~~-----------~~~-~~~~~- 73 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADL-G-----HEVTIGTRDPKATLARAEPDA-----MG-----------APP-FSQWL- 73 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHTCC-----------------------CC-HHHHG-
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCChhhhhhhhhhhh-----hc-----------chh-hhHHH-
Confidence 458999999999999999999999 8 999999999875 2211000 00 000 00000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHH-HHHhhccCCCCEEEEEee
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEI-SRYWKERITVPVIISLAK 198 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i-~~~l~~~~~~~iIIs~tk 198 (461)
.+ .+....+++++++++||+||+|||++...+++.++ .+.+ + +++||++++
T Consensus 74 -------------~~-----------~~~~~~~~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~---g~ivi~~s~ 125 (245)
T 3dtt_A 74 -------------PE-----------HPHVHLAAFADVAAGAELVVNATEGASSIAALTAAGAENL-A---GKILVDIAN 125 (245)
T ss_dssp -------------GG-----------STTCEEEEHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-T---TSEEEECCC
T ss_pred -------------hh-----------cCceeccCHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-C---CCEEEECCC
Confidence 00 01123467788889999999999999999999999 7777 4 689999998
Q ss_pred cCcccc-----ccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccC------ceEEEE-eCChhHHHHHHHHhcC
Q 012547 199 GVEAEL-----EAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKE------YANARI-CGAEKWRKPLAKFLRR 266 (461)
Q Consensus 199 Gi~~~~-----~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~------~~~~~~-~~~~~~~~~l~~ll~~ 266 (461)
|+.... ....+...+++.+++.++. .+ ++...|+....+..+. +..+++ +.+++..+.++++|+.
T Consensus 126 ~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~--~~-vv~~~~~~~a~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~ 202 (245)
T 3dtt_A 126 PLDFSHGMPPTLNPVNTDSLGEQIQRTFPE--AK-VVKTLNTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKS 202 (245)
T ss_dssp CEECTTCSSCEESSCSSCCHHHHHHHHSTT--SE-EEECSTTSCHHHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCcCCccccccCCCCccHHHHHHHHCCC--Ce-EEEeecccCHHHhcCccccCCCCeeEEEECCCHHHHHHHHHHHHH
Confidence 763210 0001456788889888752 23 3344555443333221 222344 4457888999999999
Q ss_pred CCce-EEecCChHHHHHHHHHHHH
Q 012547 267 PHFT-VWDNGDLVTHEVMGGLKNV 289 (461)
Q Consensus 267 ~g~~-v~~s~Di~gve~~galKNv 289 (461)
.|++ ++...++-.....+.+-|.
T Consensus 203 ~g~~~~~~~G~~g~a~~~k~~~~~ 226 (245)
T 3dtt_A 203 LGHQDVIDLGDITTARGAEMLLPV 226 (245)
T ss_dssp TTCCCEEEEESGGGHHHHHTTHHH
T ss_pred cCCCceeccCcHHHHHHhhhhHHH
Confidence 9985 4545554333334433333
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-13 Score=138.14 Aligned_cols=255 Identities=14% Similarity=0.092 Sum_probs=156.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+|||+|||+|.||.++|..|+++ | ++|++|+|+++.++.+.+ .
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~-G-----~~V~~~dr~~~~~~~~~~--------~---------------------- 51 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQ-G-----KRVAIWNRSPGKAAALVA--------A---------------------- 51 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHH--------H----------------------
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHH--------C----------------------
Confidence 458999999999999999999999 8 999999999876553110 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHH--HHHHHhhccCCCCEEEEEee
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE--EISRYWKERITVPVIISLAK 198 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~--~i~~~l~~~~~~~iIIs~tk 198 (461)
++..+++++++++++|+||+|||.. .+++++. .+.+. .+ ++++|.++.
T Consensus 52 -------------------------g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~l~~~-~~---g~ivid~st 102 (306)
T 3l6d_A 52 -------------------------GAHLCESVKAALSASPATIFVLLDNHATHEVLGMPGVARA-LA---HRTIVDYTT 102 (306)
T ss_dssp -------------------------TCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTSTTHHHH-TT---TCEEEECCC
T ss_pred -------------------------CCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcccchhhc-cC---CCEEEECCC
Confidence 2345678889899999999999976 5888886 66554 44 678887764
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEec--CC
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN--GD 276 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s--~D 276 (461)
+.+.. ...+.+.+.+ .|.......+..+|..+ ..+.. .++++++++..+.++.+|+..+-+++.. .+
T Consensus 103 -~~~~~-----~~~l~~~~~~-~g~~~vdapv~g~~~~~---~~~~~-~i~~gg~~~~~~~~~~ll~~lg~~~~~~~~g~ 171 (306)
T 3l6d_A 103 -NAQDE-----GLALQGLVNQ-AGGHYVKGMIVAYPRNV---GHRES-HSIHTGDREAFEQHRALLEGLAGHTVFLPWDE 171 (306)
T ss_dssp -CCTTH-----HHHHHHHHHH-TTCEEEEEEEESCGGGT---TCTTC-EEEEEECHHHHHHHHHHHHTTCSEEEECCHHH
T ss_pred -CCHHH-----HHHHHHHHHH-cCCeEEecccccCcccc---cCCce-EEEEcCCHHHHHHHHHHHHHhcCCEEEecCCC
Confidence 34331 1222232322 22111111222223221 22222 3456778888899999999885466555 32
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC---hh--hhhhhhccccchhHHHH
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP---LL--ADTYVTLLKGRNAWYGQ 351 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~---gl--gDl~~T~~~sRN~~~G~ 351 (461)
-.| -+.++|+++ +....++.|+..+++++|.+++++... +. ++... .++ ++.
T Consensus 172 ~~g--~g~~~k~~~---------------~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~----~~~--~~~ 228 (306)
T 3l6d_A 172 ALA--FATVLHAHA---------------FAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADA----LEE--AVR 228 (306)
T ss_dssp HHH--HHHHHHHHH---------------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH----HHH--HHH
T ss_pred Ccc--HHHHHHHHH---------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHH----HHH--HHH
Confidence 112 222444221 112357899999999999999887642 11 12111 111 122
Q ss_pred HHhcCCChhhHhhhhcCCC-cc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 352 ELAKGRLTLDLGDSIKGKG-MI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 352 ~l~~g~~~~~~~~~~~~~~-~v-EG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
.+.++. +.... ++ -.....+.+.+.+++.|+ + +|+.+.+.+++.
T Consensus 229 ~~~~~~--------~~~~~~~~~~~~KDl~~~~~~a~~~g~--------------~-~p~~~~~~~~~~ 274 (306)
T 3l6d_A 229 RLETQD--------FKGDQARLDVHADAFAHIAQSLHAQGV--------------W-TPVFDAVCQVVQ 274 (306)
T ss_dssp HHHHTC--------CCTTSSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHH
T ss_pred HHhcCC--------CCCCcccHHHHHHHHHHHHHHHHHcCC--------------C-chHHHHHHHHHH
Confidence 222211 11111 22 234566789999999995 6 899999988774
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-14 Score=138.91 Aligned_cols=175 Identities=16% Similarity=0.105 Sum_probs=117.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+|||+|||+|+||+++|..|++. | + +|++|+|+++.++.+. +. +.
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~-g-----~~~~V~~~d~~~~~~~~~~---------~~---------------g~--- 47 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRS-G-----FKGKIYGYDINPESISKAV---------DL---------------GI--- 47 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT-T-----CCSEEEEECSCHHHHHHHH---------HT---------------TS---
T ss_pred CcEEEEEecCHHHHHHHHHHHhc-C-----CCcEEEEEeCCHHHHHHHH---------HC---------------CC---
Confidence 36999999999999999999998 8 6 8999999987554311 00 00
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc-CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~-~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
....++|++++++ ++|+||+|||++.+.++++++.+++++ +++|+.+++
T Consensus 48 --------------------------~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~~l~~---~~iv~~~~~- 97 (281)
T 2g5c_A 48 --------------------------IDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSE---DATVTDQGS- 97 (281)
T ss_dssp --------------------------CSEEESCGGGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCT---TCEEEECCS-
T ss_pred --------------------------cccccCCHHHHhcCCCCEEEEcCCHHHHHHHHHHHHhhCCC---CcEEEECCC-
Confidence 1123567777888 999999999999999999999998876 666666553
Q ss_pred CccccccccccCCHHHHHHhHhCC---CCCcEE--EEeCcchhH-hhhccCceEEEE--eCChhHHHHHHHHhcCCCceE
Q 012547 200 VEAELEAVPRIITPTQMINRATGV---PIENIL--YLGGPNIAS-EIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTV 271 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~---~~~~v~--vlsGPn~a~-ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v 271 (461)
.... ..+.+.+.++. +.+++. ..+||+++. ++..+.++.++. +.+++..+.++++|+..|+++
T Consensus 98 ~~~~---------~~~~l~~~l~~~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~ 168 (281)
T 2g5c_A 98 VKGK---------LVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVV 168 (281)
T ss_dssp CCTH---------HHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEE
T ss_pred CcHH---------HHHHHHHhccccceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence 3222 11234444321 111211 234677764 345665444333 346778899999999999999
Q ss_pred EecCChHHHHH---HHHHHHH
Q 012547 272 WDNGDLVTHEV---MGGLKNV 289 (461)
Q Consensus 272 ~~s~Di~gve~---~galKNv 289 (461)
+..++...-+| ++.+.|.
T Consensus 169 ~~~~~~~~d~~~~~~~~~~~~ 189 (281)
T 2g5c_A 169 EYMSPELHDYVFGVVSHLPHA 189 (281)
T ss_dssp EECCHHHHHHHHHHHTHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHHH
Confidence 88887665434 4444444
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=132.66 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=109.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.|||+|||+|.||+++|..|++. | ++ |.+|+|+++.++.+.+ . +
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~-g-----~~~v~~~~~~~~~~~~~~~---------~------------~-------- 54 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRK-G-----FRIVQVYSRTEESARELAQ---------K------------V-------- 54 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSSHHHHHHHHH---------H------------T--------
T ss_pred CCeEEEEcCCHHHHHHHHHHHHC-C-----CeEEEEEeCCHHHHHHHHH---------H------------c--------
Confidence 47999999999999999999999 8 77 9999999876543110 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
++..+++++++++++|+||+|||++.++++++++.+++++ ++++|++++|++
T Consensus 55 -------------------------g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v~~~l~~~~~~---~~ivv~~s~~~~ 106 (266)
T 3d1l_A 55 -------------------------EAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQGIVEGKRE---EALMVHTAGSIP 106 (266)
T ss_dssp -------------------------TCEEESCGGGSCSCCSEEEECCCHHHHHHHHHHHHTTCCT---TCEEEECCTTSC
T ss_pred -------------------------CCceeCCHHHHhcCCCEEEEecCHHHHHHHHHHHHhhcCC---CcEEEECCCCCc
Confidence 2345677778788999999999999999999999888766 789999999987
Q ss_pred cccccccccCCHHHHHHhHhCCCC--CcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCCh
Q 012547 202 AELEAVPRIITPTQMINRATGVPI--ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~--~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
.+. +.+.++.+. +....++||.. . ..+....++.+.+++..+.++++|+..|++++..++.
T Consensus 107 ~~~------------l~~~~~~~~~~~~~~~~~g~~~--~-~~~~~~~~v~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 169 (266)
T 3d1l_A 107 MNV------------WEGHVPHYGVFYPMQTFSKQRE--V-DFKEIPFFIEASSTEDAAFLKAIASTLSNRVYDADSE 169 (266)
T ss_dssp GGG------------STTTCSSEEEEEECCCC---CC--C-CCTTCCEEEEESSHHHHHHHHHHHHTTCSCEEECCHH
T ss_pred hHH------------HHHHHHhccCcCCceecCCCch--h-hcCCCeEEEecCCHHHHHHHHHHHHhcCCcEEEeCHH
Confidence 641 333332100 01111223222 1 1222233333567788899999999999888877654
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-13 Score=129.66 Aligned_cols=152 Identities=15% Similarity=0.139 Sum_probs=109.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++|||+|||+|.||.+++..|++. | ++|.+|+|++++++.+.++ +
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~-g-----~~v~~~~~~~~~~~~~~~~---------------------~-------- 46 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQT-P-----HELIISGSSLERSKEIAEQ---------------------L-------- 46 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTS-S-----CEEEEECSSHHHHHHHHHH---------------------H--------
T ss_pred CccEEEEECCCHHHHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHHH---------------------c--------
Confidence 458999999999999999999988 7 8999999998765431100 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
++..++|++++++++|+||+|+|++.+++++.++. + ++++|++++|+.
T Consensus 47 -------------------------g~~~~~~~~~~~~~~D~Vi~~v~~~~~~~v~~~l~----~---~~~vv~~~~~~~ 94 (259)
T 2ahr_A 47 -------------------------ALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPLH----F---KQPIISMAAGIS 94 (259)
T ss_dssp -------------------------TCCBCSSHHHHHHTCSEEEECSCGGGHHHHHTTSC----C---CSCEEECCTTCC
T ss_pred -------------------------CCEeeCCHHHHHhcCCEEEEEeCcHhHHHHHHHhc----c---CCEEEEeCCCCC
Confidence 12234677788889999999999999998887753 3 578888888887
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeC--ChhHHHHHHHHhcCCCceEEecC
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
.+ .+++.++.. .++ +..+|+++..+..|. ..+..+. +++..+.++++|+..|..++..+
T Consensus 95 ~~------------~l~~~~~~~-~~~-v~~~p~~~~~~~~g~-~~i~~~~~~~~~~~~~~~~ll~~~G~~~~~~~ 155 (259)
T 2ahr_A 95 LQ------------RLATFVGQD-LPL-LRIMPNMNAQILQSS-TALTGNALVSQELQARVRDLTDSFGSTFDISE 155 (259)
T ss_dssp HH------------HHHHHHCTT-SCE-EEEECCGGGGGTCEE-EEEEECTTCCHHHHHHHHHHHHTTEEEEECCG
T ss_pred HH------------HHHHhcCCC-CCE-EEEcCCchHHHcCce-EEEEcCCCCCHHHHHHHHHHHHhCCCEEEecH
Confidence 54 356666532 233 347899888777763 2223443 67778999999999985444443
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=132.56 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=109.2
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+|||+|||+ |.||+++|..|++. | ++|++|+|+++.++.+.+ +
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~-g-----~~V~~~~r~~~~~~~~~~----------------------~-------- 54 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDS-A-----HHLAAIEIAPEGRDRLQG----------------------M-------- 54 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS-S-----SEEEEECCSHHHHHHHHH----------------------T--------
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHh----------------------c--------
Confidence 479999999 99999999999998 8 899999999875543110 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
++..+ ++.++++++|+||+|||++.++++++++.+++++ +++||++++|..
T Consensus 55 -------------------------g~~~~-~~~~~~~~aDvVi~av~~~~~~~v~~~l~~~l~~---~~ivv~~s~~~~ 105 (286)
T 3c24_A 55 -------------------------GIPLT-DGDGWIDEADVVVLALPDNIIEKVAEDIVPRVRP---GTIVLILDAAAP 105 (286)
T ss_dssp -------------------------TCCCC-CSSGGGGTCSEEEECSCHHHHHHHHHHHGGGSCT---TCEEEESCSHHH
T ss_pred -------------------------CCCcC-CHHHHhcCCCEEEEcCCchHHHHHHHHHHHhCCC---CCEEEECCCCch
Confidence 01111 4456788999999999999999999999998876 689999888874
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHh--------hhccCce-------EEE-EeCChhHHHHHHHHhc
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--------IYNKEYA-------NAR-ICGAEKWRKPLAKFLR 265 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~e--------v~~g~~~-------~~~-~~~~~~~~~~l~~ll~ 265 (461)
.. .+.+..+ ..+ .+...|+++.+ +..|.++ .+. .+.+++..+.++++|+
T Consensus 106 ~~------------~l~~~~~--~~~-~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~~~v~~l~~ 170 (286)
T 3c24_A 106 YA------------GVMPERA--DIT-YFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICE 170 (286)
T ss_dssp HH------------TCSCCCT--TSE-EEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHHHHHHHHHHH
T ss_pred hH------------HHHhhhC--CCe-EEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHHHHHHHHHHH
Confidence 33 1222111 122 34477777544 5666422 222 3456788899999999
Q ss_pred CCCc---eEEecC
Q 012547 266 RPHF---TVWDNG 275 (461)
Q Consensus 266 ~~g~---~v~~s~ 275 (461)
..|. +++..+
T Consensus 171 ~~G~~~~~~~~v~ 183 (286)
T 3c24_A 171 TMWSPVTRTHRVT 183 (286)
T ss_dssp HHTCSEEEEEECC
T ss_pred HhcCCcceEEEeC
Confidence 9998 666554
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.8e-13 Score=130.40 Aligned_cols=212 Identities=11% Similarity=0.115 Sum_probs=130.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhh---hHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAE---HLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~---~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
.++||+|||+|.||++||..|+++ | ++|++|+|+++.++..... .+....+.+ .+....
T Consensus 14 ~~~~I~VIG~G~mG~~iA~~la~~-G-----~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g------------~~~~~~ 75 (302)
T 1f0y_A 14 IVKHVTVIGGGLMGAGIAQVAAAT-G-----HTVVLVDQTEDILAKSKKGIEESLRKVAKKK------------FAENPK 75 (302)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHHHHHHHHHHHTT------------SSSCHH
T ss_pred cCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHHHHHHHHHHHHcC------------CCCccc
Confidence 357899999999999999999999 8 9999999999877653211 000000000 000000
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--HHHHHHHHHHHhhccCCCCEEEEE
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISL 196 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~--~~~vl~~i~~~l~~~~~~~iIIs~ 196 (461)
+. .+..++. ...+.+++|+++++++||+||+|||.+. .+++++++.+++++ ++++++.
T Consensus 76 ---~~-~~~~~~~-------------~~~i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~---~~iv~s~ 135 (302)
T 1f0y_A 76 ---AG-DEFVEKT-------------LSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAE---HTIFASN 135 (302)
T ss_dssp ---HH-HHHHHHH-------------HHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCT---TCEEEEC
T ss_pred ---cc-hhhHHHH-------------HhceEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEEC
Confidence 00 0000000 0147788999888999999999999864 67889999988876 6888888
Q ss_pred eecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEec
Q 012547 197 AKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN 274 (461)
Q Consensus 197 tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s 274 (461)
++|++.. + +.+.+..+ .++ +...|..+..+ +....++.+ .+++..+.+.+++...|..+...
T Consensus 136 ts~i~~~-----------~-l~~~~~~~-~~~-~g~h~~~P~~~--~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~ 199 (302)
T 1f0y_A 136 TSSLQIT-----------S-IANATTRQ-DRF-AGLHFFNPVPV--MKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC 199 (302)
T ss_dssp CSSSCHH-----------H-HHTTSSCG-GGE-EEEEECSSTTT--CCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCHH-----------H-HHHhcCCc-ccE-EEEecCCCccc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEe
Confidence 8887654 2 44444422 222 22233322222 222222223 25778899999998888766655
Q ss_pred CChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 275 GDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 275 ~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
.|.-|. +. | .++...++|..++++..|.+++++
T Consensus 200 ~~~~g~----i~---------------n---r~l~~~~~Ea~~l~~~g~~~~~~i 232 (302)
T 1f0y_A 200 KDTPGF----IV---------------N---RLLVPYLMEAIRLYERGDASKEDI 232 (302)
T ss_dssp CSCTTT----TH---------------H---HHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred cCcccc----cH---------------H---HHHHHHHHHHHHHHHcCCCCHHHH
Confidence 553321 11 1 122245789889998888877664
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-12 Score=119.47 Aligned_cols=186 Identities=14% Similarity=0.220 Sum_probs=123.1
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+||| +|.||++++..|++. | ++|++|+|++++++.+.++ + . .+++.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~-g-----~~V~~~~r~~~~~~~~~~~-----~---~----------~~~~~------ 50 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL-G-----HEIVVGSRREEKAEAKAAE-----Y---R----------RIAGD------ 50 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT-T-----CEEEEEESSHHHHHHHHHH-----H---H----------HHHSS------
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHHH-----h---c----------ccccc------
Confidence 6999999 999999999999998 8 8999999998765542211 0 0 01110
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
..+. .++++++++++|+||+|+|++.++++++++.+.++ +++++++++|+..
T Consensus 51 -----------------------~~~~-~~~~~~~~~~~D~Vi~~~~~~~~~~~~~~l~~~~~----~~~vi~~~~g~~~ 102 (212)
T 1jay_A 51 -----------------------ASIT-GMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILR----EKIVVSPLVPVSR 102 (212)
T ss_dssp -----------------------CCEE-EEEHHHHHHHCSEEEECSCHHHHHHHHHHTHHHHT----TSEEEECCCCEEC
T ss_pred -----------------------CCCC-hhhHHHHHhcCCEEEEeCChhhHHHHHHHHHHHcC----CCEEEEcCCCcCc
Confidence 0233 35677788899999999999999999999988774 5899999999985
Q ss_pred ccccc--cccCCHHHHHHhHhCCCCCcEEEEeCcchh-Hhhhc--cCceEE-EEeC-ChhHHHHHHHHhcCC-CceEEec
Q 012547 203 ELEAV--PRIITPTQMINRATGVPIENILYLGGPNIA-SEIYN--KEYANA-RICG-AEKWRKPLAKFLRRP-HFTVWDN 274 (461)
Q Consensus 203 ~~~~~--~~~~~~se~i~~~lg~~~~~v~vlsGPn~a-~ev~~--g~~~~~-~~~~-~~~~~~~l~~ll~~~-g~~v~~s 274 (461)
+.... .......+.+++.++. .++ +...|+.+ ..... ...... ..++ +++..+.++++|+.. |+.+...
T Consensus 103 ~~~~~~~~~g~~~~~~l~~~~~~--~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~l~~~~~G~~~~~~ 179 (212)
T 1jay_A 103 GAKGFTYSSERSAAEIVAEVLES--EKV-VSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDA 179 (212)
T ss_dssp CTTCCEECCSSCHHHHHHHHHTC--SCE-EECCTTCCHHHHHCTTCCCCEEEEEEESCHHHHHHHHHHHHHSTTEEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCC--CeE-EEEccchHHHHhhCcCCCCCccEEEECCcHHHHHHHHHHHHHcCCCCceec
Confidence 31000 0011234567777752 333 34444443 33222 122222 3334 477889999999999 9987776
Q ss_pred CChHHHHHHHHHHHHH
Q 012547 275 GDLVTHEVMGGLKNVY 290 (461)
Q Consensus 275 ~Di~gve~~galKNv~ 290 (461)
.++....|.+.+-|.+
T Consensus 180 ~~~~~a~~~k~~~~~~ 195 (212)
T 1jay_A 180 GPLSNSRLVESLTPLI 195 (212)
T ss_dssp ESGGGHHHHHTHHHHH
T ss_pred cchhHHHHhcchHHHH
Confidence 7765566666555543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-12 Score=124.94 Aligned_cols=210 Identities=14% Similarity=0.147 Sum_probs=130.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
++||+|||+|.||+++|..|+.+ | ++|++|+++++.++...+. +... +..+.+... .+.
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~~~~~~~~-----i~~~---------~~~~~~~g~-~~~ 62 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFH-G-----FAVTAYDINTDALDAAKKR-----FEGL---------AAVYEKEVA-GAA 62 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHHH-----HHHH---------HHHHHHHST-TCT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHHH-----HHHH---------HHHHHHhcc-cCC
Confidence 46999999999999999999999 8 9999999999877653321 1110 001111000 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.... ++. ...+..++|+++++++||+||+|||++ ..+++++++.+++++ ++++++.+.++
T Consensus 63 ~~~~--~~~-------------~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~---~~il~s~tS~~ 124 (283)
T 4e12_A 63 DGAA--QKA-------------LGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPA---KTIFATNSSTL 124 (283)
T ss_dssp TTHH--HHH-------------HHHCEEESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSSS
T ss_pred HHHH--HHH-------------HcCeEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCC---CcEEEECCCCC
Confidence 0000 000 013677899999899999999999987 889999999999887 78888888776
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEec-CCh
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN-GDL 277 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s-~Di 277 (461)
... + +.+.++.+ .++. -..|..+. ..+....++.+ .+++..+.+.+++...|..+... .|.
T Consensus 125 ~~~-----------~-la~~~~~~-~~~i-g~h~~~p~--~~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~ 188 (283)
T 4e12_A 125 LPS-----------D-LVGYTGRG-DKFL-ALHFANHV--WVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEK 188 (283)
T ss_dssp CHH-----------H-HHHHHSCG-GGEE-EEEECSST--TTSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCC
T ss_pred CHH-----------H-HHhhcCCC-cceE-EEccCCCc--ccCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 543 2 45555432 2321 11222211 12222222333 25678899999999888776654 554
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 278 VTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 278 ~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
-|- +-| .++...++|...+.+..+++++++
T Consensus 189 ~g~-----i~n-----------------r~~~~~~~ea~~l~~~g~~~~~~i 218 (283)
T 4e12_A 189 AGY-----VLN-----------------SLLVPLLDAAAELLVDGIADPETI 218 (283)
T ss_dssp TTT-----THH-----------------HHHHHHHHHHHHHHHTTSCCHHHH
T ss_pred CCE-----Eeh-----------------HHHHHHHHHHHHHHHhCCCCHHHH
Confidence 332 001 122235677777777777777654
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=124.45 Aligned_cols=166 Identities=11% Similarity=0.128 Sum_probs=114.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+|||+|||+|.||++++..|++. | ++|.+|+|++++++.+. .
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~-g-----~~V~~~~r~~~~~~~~~---------~---------------------- 69 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGS-G-----FKVVVGSRNPKRTARLF---------P---------------------- 69 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSHHHHHHHS---------B----------------------
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHH---------H----------------------
Confidence 347999999999999999999998 8 89999999976543210 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.++..+ +++++++++|+||+|+|++.++++++ +.+.+ + ++++|++++|+.
T Consensus 70 ------------------------~g~~~~-~~~~~~~~~DvVi~av~~~~~~~v~~-l~~~~-~---~~~vv~~s~g~~ 119 (215)
T 2vns_A 70 ------------------------SAAQVT-FQEEAVSSPEVIFVAVFREHYSSLCS-LSDQL-A---GKILVDVSNPTE 119 (215)
T ss_dssp ------------------------TTSEEE-EHHHHTTSCSEEEECSCGGGSGGGGG-GHHHH-T---TCEEEECCCCCH
T ss_pred ------------------------cCCcee-cHHHHHhCCCEEEECCChHHHHHHHH-HHHhc-C---CCEEEEeCCCcc
Confidence 012333 67778899999999999988888776 76666 4 689999999987
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEE----EeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCCh
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILY----LGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~v----lsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
.... .......+++.+.++. .++.. ++++.++..+..+.......+.+++..+.++++|+..|++++...++
T Consensus 120 ~~~l--~~~~~~~~~l~~~l~~--~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~g~~ 195 (215)
T 2vns_A 120 QEHL--QHRESNAEYLASLFPT--CTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDMGSL 195 (215)
T ss_dssp HHHH--HCSSCHHHHHHHHCTT--SEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHHHHHHHHHHHTTCEEEECCSG
T ss_pred cccc--cccccHHHHHHHHCCC--CeEEeccccccHhHhcccccCCceeEEEecCCHHHHHHHHHHHHHcCCceEeecch
Confidence 5410 0113456777777752 23221 12222222222333333344667888899999999999999988875
Q ss_pred H
Q 012547 278 V 278 (461)
Q Consensus 278 ~ 278 (461)
.
T Consensus 196 ~ 196 (215)
T 2vns_A 196 A 196 (215)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-12 Score=127.21 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=108.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.|||+|||+|.||+++|..|++. | + +|++|+|+++.++.+.+ . +.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~-G-----~~~~V~~~dr~~~~~~~a~~--------~----------------G~--- 79 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS-G-----FKGKIYGYDINPESISKAVD--------L----------------GI--- 79 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT-T-----CCSEEEEECSCHHHHHHHHH--------T----------------TS---
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-C-----CCCEEEEEECCHHHHHHHHH--------C----------------CC---
Confidence 48999999999999999999999 8 6 99999999876543110 0 00
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHH-HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~-av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
....++|+++ ++++||+||+|||++.+.++++++.+++++ +++|++++ +
T Consensus 80 --------------------------~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~---~~iv~d~~-S 129 (314)
T 3ggo_A 80 --------------------------IDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSE---DATVTDQG-S 129 (314)
T ss_dssp --------------------------CSEEESCTTGGGGGCCSEEEECSCGGGHHHHHHHHHHHSCT---TCEEEECC-S
T ss_pred --------------------------cchhcCCHHHHhhccCCEEEEeCCHHHHHHHHHHHhhccCC---CcEEEECC-C
Confidence 1134577778 889999999999999999999999999887 67777654 3
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEe-----CcchhH-hhhccCceEEEEe--CChhHHHHHHHHhcCCCceE
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLG-----GPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTV 271 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vls-----GPn~a~-ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v 271 (461)
+... +.+.+.+.++........+. ||..+. ++..+.+..++.. .+++..+.++++|+..|.++
T Consensus 130 vk~~---------~~~~~~~~l~~~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v 200 (314)
T 3ggo_A 130 VKGK---------LVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVV 200 (314)
T ss_dssp CCTH---------HHHHHHHHHGGGEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEE
T ss_pred CcHH---------HHHHHHHhcCCCEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEE
Confidence 3211 12334444421101111223 444443 2335544433332 35778899999999999887
Q ss_pred EecC
Q 012547 272 WDNG 275 (461)
Q Consensus 272 ~~s~ 275 (461)
+..+
T Consensus 201 ~~~~ 204 (314)
T 3ggo_A 201 EYMS 204 (314)
T ss_dssp EECC
T ss_pred EEcC
Confidence 7554
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-12 Score=124.52 Aligned_cols=164 Identities=16% Similarity=0.107 Sum_probs=109.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+++ |. +++|.+|+|+++.++.+. +. +.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~-g~---~~~V~~~d~~~~~~~~~~---------~~---------------g~----- 52 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRD-HP---HYKIVGYNRSDRSRDIAL---------ER---------------GI----- 52 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-CT---TSEEEEECSSHHHHHHHH---------HT---------------TS-----
T ss_pred cceEEEEeeCHHHHHHHHHHHhC-CC---CcEEEEEcCCHHHHHHHH---------Hc---------------CC-----
Confidence 47999999999999999999987 51 168999999987554311 00 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH-hhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~-l~~~~~~~iIIs~tkGi~ 201 (461)
....++|++++++++|+||+|||++.++++++++.++ +++ +++|++++++ .
T Consensus 53 ------------------------~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~~~l~~---~~ivi~~~~~-~ 104 (290)
T 3b1f_A 53 ------------------------VDEATADFKVFAALADVIILAVPIKKTIDFIKILADLDLKE---DVIITDAGST-K 104 (290)
T ss_dssp ------------------------CSEEESCTTTTGGGCSEEEECSCHHHHHHHHHHHHTSCCCT---TCEEECCCSC-H
T ss_pred ------------------------cccccCCHHHhhcCCCEEEEcCCHHHHHHHHHHHHhcCCCC---CCEEEECCCC-c
Confidence 0134566777788999999999999999999999988 876 6777755432 2
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEE--------EEeCcchhH-hhhccCceEEEE--eCChhHHHHHHHHhcCCCce
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENIL--------YLGGPNIAS-EIYNKEYANARI--CGAEKWRKPLAKFLRRPHFT 270 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~--------vlsGPn~a~-ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~ 270 (461)
.. ..+.+.+.++....++. ..+||+.+. ++..+.+..... +.+++..+.++++|+..|++
T Consensus 105 ~~---------~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~ 175 (290)
T 3b1f_A 105 YE---------IVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHAR 175 (290)
T ss_dssp HH---------HHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCE
T ss_pred hH---------HHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCE
Confidence 21 11445665542111221 112555443 344555444333 24567889999999999999
Q ss_pred EEecCC
Q 012547 271 VWDNGD 276 (461)
Q Consensus 271 v~~s~D 276 (461)
++..++
T Consensus 176 ~~~~~~ 181 (290)
T 3b1f_A 176 YVEIDA 181 (290)
T ss_dssp EEECCH
T ss_pred EEEcCH
Confidence 876654
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=130.26 Aligned_cols=177 Identities=10% Similarity=0.063 Sum_probs=113.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.||+.||..|+++ | ++|++|++++++....-.+.+....+.+ .+..-.
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~a-G-----~~V~l~D~~~e~a~~~i~~~l~~~~~~G------------~l~~~~---- 111 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLA-G-----IETFLVVRNEQRCKQELEVMYAREKSFK------------RLNDKR---- 111 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHHHHHHHHTT------------SCCHHH----
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEECcHHHHHHHHHHHHHHHHHcC------------CCCHHH----
Confidence 37999999999999999999999 8 9999999998733211111111111111 111000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
. ++ ....+.+++|++ ++++||+||+|||.+ ..+++++++.+++++ ++++++.+.++
T Consensus 112 ---~--~~-------------~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~---~aIlasnTSsl 169 (460)
T 3k6j_A 112 ---I--EK-------------INANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKS---TCIFGTNTSSL 169 (460)
T ss_dssp ---H--HH-------------HHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCT---TCEEEECCSSS
T ss_pred ---H--HH-------------HhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCC---CCEEEecCCCh
Confidence 0 00 012678889986 689999999999974 567889999999887 78888888776
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (461)
+.. .+.+.+..+ .++.- .-|-.+.. ......++.+ .+++..+.+.+++...|..+....|.-
T Consensus 170 ~i~------------~ia~~~~~p-~r~iG-~HffnPv~--~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~p 233 (460)
T 3k6j_A 170 DLN------------EISSVLRDP-SNLVG-IHFFNPAN--VIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCK 233 (460)
T ss_dssp CHH------------HHHTTSSSG-GGEEE-EECCSSTT--TCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCC
T ss_pred hHH------------HHHHhccCC-cceEE-EEecchhh--hCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 553 255555432 23221 11211111 1222222333 267888999999999998888777865
Q ss_pred H
Q 012547 279 T 279 (461)
Q Consensus 279 g 279 (461)
|
T Consensus 234 G 234 (460)
T 3k6j_A 234 S 234 (460)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-13 Score=130.37 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=109.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.|||+|||+|+||+++|..|.+. | ++|++|+|+++ .+. +..
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~-G-----~~V~~~~r~~~-~~~--------------------------~~~------ 59 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQC-G-----YSVVFGSRNPQ-VSS--------------------------LLP------ 59 (201)
Confidence 37899999999999999999998 8 89999999875 221 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.++.++ +++++++++|+||++||++++++++ ++.+.. + +++||++++|+..
T Consensus 60 -----------------------~g~~~~-~~~~~~~~aDvVilav~~~~~~~v~-~l~~~~-~---~~ivI~~~~G~~~ 110 (201)
T 2yjz_A 60 -----------------------RGAEVL-CYSEAASRSDVIVLAVHREHYDFLA-ELADSL-K---GRVLIDVSNNQKM 110 (201)
Confidence 012233 5566778999999999999998887 565543 3 5799999999963
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhc-cCc----eEEEEeCChhHHHHHHHHhcCCCceEEecCCh
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN-KEY----ANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~-g~~----~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
... ...-.+.+.+.++. .+ ++...|+++..+.. |.. +..+++.+++..+.++++|+..|++++...++
T Consensus 111 ~~~----~~~~~~~l~~~~~~--~~-vvra~~n~~a~~~~~g~l~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~G~l 183 (201)
T 2yjz_A 111 NQY----PESNAEYLAQLVPG--AH-VVKAFNTISAWALQSGTLDASRQVFVCGNDSKAKDRVMDIARTLGLTPLDQGSL 183 (201)
Confidence 100 00011345565542 22 46677888776554 321 12234455677889999999999988766654
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=121.88 Aligned_cols=152 Identities=21% Similarity=0.215 Sum_probs=102.1
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++||+||| +|+||+++|..|++. | ++|++|+|+++.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~-G-----~~V~~~~~~~~~------------------------------------- 57 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRAS-G-----YPISILDREDWA------------------------------------- 57 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT-T-----CCEEEECTTCGG-------------------------------------
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhC-C-----CeEEEEECCccc-------------------------------------
Confidence 35899999 999999999999998 8 899999877520
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
++.+++++||+||+|||++.++++++++.+++++ +++|+.+ .|+.
T Consensus 58 -------------------------------~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~---~~iv~~~-~svk 102 (298)
T 2pv7_A 58 -------------------------------VAESILANADVVIVSVPINLTLETIERLKPYLTE---NMLLADL-TSVK 102 (298)
T ss_dssp -------------------------------GHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TSEEEEC-CSCC
T ss_pred -------------------------------CHHHHhcCCCEEEEeCCHHHHHHHHHHHHhhcCC---CcEEEEC-CCCC
Confidence 1234577899999999999999999999998876 5655544 4543
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHHHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (461)
.. ..+.+.+..+....+...+.||.. +...+.+..++.+.+++..+.++++|+..|++++..++....+
T Consensus 103 ~~---------~~~~~~~~~~~~~v~~hP~~g~~~--~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~~d~ 171 (298)
T 2pv7_A 103 RE---------PLAKMLEVHTGAVLGLHPMFGADI--ASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQTNATEHDH 171 (298)
T ss_dssp HH---------HHHHHHHHCSSEEEEEEECSCTTC--SCCTTCEEEEEEEECGGGTHHHHHHHHHTTCEEEECCHHHHHH
T ss_pred cH---------HHHHHHHhcCCCEEeeCCCCCCCc--hhhcCCeEEEecCCCHHHHHHHHHHHHHcCCEEEECCHHHHHH
Confidence 32 112334433311001112345554 2334443333333467778999999999999887766543344
Q ss_pred HH
Q 012547 282 VM 283 (461)
Q Consensus 282 ~~ 283 (461)
+.
T Consensus 172 ~~ 173 (298)
T 2pv7_A 172 NM 173 (298)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.3e-11 Score=118.60 Aligned_cols=183 Identities=14% Similarity=0.161 Sum_probs=116.1
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
.....||+|||+|.||+.||..++.+ | ++|++|+++++.++...+ .+...+.... .. ..+.
T Consensus 3 ~p~~~~VaViGaG~MG~giA~~~a~~-G-----~~V~l~D~~~~~l~~~~~-~i~~~l~~~~-------~~-g~~~---- 63 (319)
T 3ado_A 3 SPAAGDVLIVGSGLVGRSWAMLFASG-G-----FRVKLYDIEPRQITGALE-NIRKEMKSLQ-------QS-GSLK---- 63 (319)
T ss_dssp ----CEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSCHHHHHHHHH-HHHHHHHHHH-------HT-TCCC----
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHH-HHHHHHHHHH-------Hc-CCCC----
Confidence 33456899999999999999999999 8 999999999887664321 1111111000 00 0010
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
. .+.+++. +..+..++|+++++++||+||.|||.. ..++++.+|.+++++ ++++.|.|
T Consensus 64 ---~-~~~~~~~-------------l~~i~~~~~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~---~aIlaSNT 123 (319)
T 3ado_A 64 ---G-SLSAEEQ-------------LSLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDD---RVVLSSSS 123 (319)
T ss_dssp ---S-SSCHHHH-------------HHTEEEECCHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCS---SSEEEECC
T ss_pred ---C-ccCHHHH-------------HhhcccccchHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhh---cceeehhh
Confidence 0 0000001 125788999999999999999999975 688999999999988 78888888
Q ss_pred ecCccccccccccCCHHHHHHhHhCCCCCcEEEE--eCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceE-E
Q 012547 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTV-W 272 (461)
Q Consensus 198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vl--sGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v-~ 272 (461)
.|+... + +.+.+..| .++..+ ..|-. .-....++.+ .+++..+.+.+++...|... .
T Consensus 124 Ssl~is-----------~-ia~~~~~p-~r~ig~HffNP~~-----~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~ 185 (319)
T 3ado_A 124 SCLLPS-----------K-LFTGLAHV-KQCIVAHPVNPPY-----YIPLVELVPHPETSPATVDRTHALMRKIGQSPVR 185 (319)
T ss_dssp SSCCHH-----------H-HHTTCTTG-GGEEEEEECSSTT-----TCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhccch-----------h-hhhhccCC-CcEEEecCCCCcc-----ccchHHhcCCCCCcHHHHHHHHHHHHHhCCccCC
Confidence 777664 3 55545443 343222 22221 1112222322 35678888999998888665 4
Q ss_pred ecCChHH
Q 012547 273 DNGDLVT 279 (461)
Q Consensus 273 ~s~Di~g 279 (461)
+..|.-|
T Consensus 186 v~kd~pG 192 (319)
T 3ado_A 186 VLKEIDG 192 (319)
T ss_dssp CSSCCTT
T ss_pred cCCCCCC
Confidence 6677654
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.9e-11 Score=125.67 Aligned_cols=180 Identities=15% Similarity=0.144 Sum_probs=114.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.||++||..|+++ | ++|++|+++++.++...+. +...++... .. ..+....
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~a-G-----~~V~l~D~~~e~l~~~~~~-i~~~l~~~~-------~~-g~~~~~~---- 65 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASH-G-----HQVLLYDISAEALTRAIDG-IHARLNSRV-------TR-GKLTAET---- 65 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSCHHHHHHHHHH-HHHHHHTTT-------TT-TSSCHHH----
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHHH-HHHHHHHHH-------Hc-CCCCHHH----
Confidence 46899999999999999999999 8 9999999999887754321 111111000 00 0000000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+++ ..++..++|++ ++++||+||+|||++ ..+++++++.+++++ ++++++.+.++
T Consensus 66 -----~~~~-------------~~~i~~~~~~~-~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~---~~IlasntSti 123 (483)
T 3mog_A 66 -----CERT-------------LKRLIPVTDIH-ALAAADLVIEAASERLEVKKALFAQLAEVCPP---QTLLTTNTSSI 123 (483)
T ss_dssp -----HHHH-------------HHTEEEECCGG-GGGGCSEEEECCCCCHHHHHHHHHHHHHHSCT---TCEEEECCSSS
T ss_pred -----HHHH-------------HhceeEeCCHH-HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhcc---CcEEEecCCCC
Confidence 0000 12577888885 689999999999987 567899999999887 78888888887
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (461)
+.. .+.+.+..+ .++ +-..|..+..+. ....++.+ .+++..+.+.+++...|..+....|.-
T Consensus 124 ~i~------------~ia~~~~~p-~~~-ig~hf~~Pa~v~--~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~ 187 (483)
T 3mog_A 124 SIT------------AIAAEIKNP-ERV-AGLHFFNPAPVM--KLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTP 187 (483)
T ss_dssp CHH------------HHTTTSSSG-GGE-EEEEECSSTTTC--CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CHH------------HHHHHccCc-cce-EEeeecChhhhC--CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 654 245544432 232 122233222222 22222222 257788999999999888776666754
Q ss_pred H
Q 012547 279 T 279 (461)
Q Consensus 279 g 279 (461)
|
T Consensus 188 G 188 (483)
T 3mog_A 188 G 188 (483)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-10 Score=114.97 Aligned_cols=183 Identities=17% Similarity=0.160 Sum_probs=120.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.||+.||..|+ + | ++|++|+|+++.++...+. +..-
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-a-G-----~~V~v~d~~~~~~~~~~~~----------------------l~~~----- 57 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-S-K-----HEVVLQDVSEKALEAAREQ----------------------IPEE----- 57 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-T-T-----SEEEEECSCHHHHHHHHHH----------------------SCGG-----
T ss_pred CCeEEEEeeCHHHHHHHHHHH-c-C-----CEEEEEECCHHHHHHHHHH----------------------HHHH-----
Confidence 479999999999999999999 9 8 9999999999876642110 1100
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--HHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~--~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
. +.++..++|+++ +++||+||.|+|... .+.++.++.++ + ++++++.+.++
T Consensus 58 --~-------------------~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~~l~~~l~~~--~---~~IlasntSti 110 (293)
T 1zej_A 58 --L-------------------LSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKVEVLREVERL--T---NAPLCSNTSVI 110 (293)
T ss_dssp --G-------------------GGGEEEESSCTT-GGGCSEEEECCCSCHHHHHHHHHHHHTT--C---CSCEEECCSSS
T ss_pred --H-------------------hCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHHHHHHHHhcC--C---CCEEEEECCCc
Confidence 0 114677788876 899999999999764 56677888776 5 68777766666
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcE-E-EEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCC
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENI-L-YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v-~-vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
.+. + +.+.+..+ .++ . -...|- ..+....++.+ .+++..+.+.+++...|..+....|
T Consensus 111 ~~~-----------~-~a~~~~~~-~r~~G~Hf~~Pv-----~~~~lveiv~g~~t~~~~~~~~~~l~~~lGk~~v~v~d 172 (293)
T 1zej_A 111 SVD-----------D-IAERLDSP-SRFLGVHWMNPP-----HVMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKG 172 (293)
T ss_dssp CHH-----------H-HHTTSSCG-GGEEEEEECSST-----TTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CHH-----------H-HHHHhhcc-cceEeEEecCcc-----ccCCEEEEECCCCCCHHHHHHHHHHHHHcCCeEEEecc
Confidence 553 2 44434322 122 1 112232 12222222333 3678889999999988877666666
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
. .+.- .++...++|...+++. |.+++++
T Consensus 173 ~------fi~N------------------rll~~~~~EA~~l~~~-Gv~~e~i 200 (293)
T 1zej_A 173 Q------SLVN------------------RFNAAVLSEASRMIEE-GVRAEDV 200 (293)
T ss_dssp S------CHHH------------------HHHHHHHHHHHHHHHH-TCCHHHH
T ss_pred c------ccHH------------------HHHHHHHHHHHHHHHh-CCCHHHH
Confidence 4 1111 1223468888888888 7787765
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-10 Score=128.70 Aligned_cols=178 Identities=15% Similarity=0.159 Sum_probs=111.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
++||+|||+|.||+.||..|+++ | ++|++|+++++.++..... +...+.... ...+++...
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~a-G-----~~V~l~D~~~~~~~~~~~~-i~~~l~~~~--------~~G~~~~~~---- 372 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILS-N-----YPVILKEVNEKFLEAGIGR-VKANLQSRV--------RKGSMSQEK---- 372 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSHHHHHHHHHH-HHHHHHHTT--------C----CTTH----
T ss_pred CcEEEEEcCCHhhHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHH-HHHHHHHHH--------hcCCCCHHH----
Confidence 46899999999999999999999 8 9999999999877653211 111110000 000011000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--HHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~--~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
. +.....+..++|+ +++++||+||+|||.+. .++++.++.+++++ ++++++.++++
T Consensus 373 ---~---------------~~~~~~i~~~~d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~---~~IlasntStl 430 (725)
T 2wtb_A 373 ---F---------------EKTMSLLKGSLDY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQ---HCILASNTSTI 430 (725)
T ss_dssp ---H---------------HHTTTSEEEESSS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSSS
T ss_pred ---H---------------HHHhcceEEeCCH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEeCCCCC
Confidence 0 0011357888888 57899999999999875 67888999999887 78888888777
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEE--EEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCC
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~--vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
+.. + +.+.+..+ .++. ....|.. ......++.+ .+++..+.+.+++...|..+....|
T Consensus 431 ~i~-----------~-la~~~~~p-~~~iG~hf~~P~~-----~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d 492 (725)
T 2wtb_A 431 DLN-----------K-IGERTKSQ-DRIVGAHFFSPAH-----IMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGN 492 (725)
T ss_dssp CHH-----------H-HTTTCSCT-TTEEEEEECSSTT-----TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CHH-----------H-HHHHhcCC-CCEEEecCCCCcc-----cCceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEECC
Confidence 653 2 44444332 2221 1112321 1112222233 2677889999999988877776666
Q ss_pred hHH
Q 012547 277 LVT 279 (461)
Q Consensus 277 i~g 279 (461)
..|
T Consensus 493 ~~G 495 (725)
T 2wtb_A 493 CTG 495 (725)
T ss_dssp STT
T ss_pred Ccc
Confidence 533
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.21 E-value=7.9e-11 Score=119.04 Aligned_cols=173 Identities=18% Similarity=0.189 Sum_probs=113.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|++. | ++|.+|+|+.+.... ....
T Consensus 17 ~~I~IIG~G~mG~alA~~L~~~-G-----~~V~~~~~~~~~~~~--------~a~~------------------------ 58 (338)
T 1np3_A 17 KKVAIIGYGSQGHAHACNLKDS-G-----VDVTVGLRSGSATVA--------KAEA------------------------ 58 (338)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECCTTCHHHH--------HHHH------------------------
T ss_pred CEEEEECchHHHHHHHHHHHHC-c-----CEEEEEECChHHHHH--------HHHH------------------------
Confidence 6899999999999999999998 8 899999998753211 0000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHH-HHHHHhhccCCCCEEEEEeecCcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.++.++ ++++++++||+||+|||++...++++ ++.+++++ +++|+++ +|+..
T Consensus 59 ----------------------~G~~~~-~~~e~~~~aDvVilavp~~~~~~v~~~~i~~~l~~---~~ivi~~-~gv~~ 111 (338)
T 1np3_A 59 ----------------------HGLKVA-DVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKK---GATLAFA-HGFSI 111 (338)
T ss_dssp ----------------------TTCEEE-CHHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCT---TCEEEES-CCHHH
T ss_pred ----------------------CCCEEc-cHHHHHhcCCEEEEeCCcHHHHHHHHHHHHhhCCC---CCEEEEc-CCchh
Confidence 023344 78888899999999999999999998 99998887 6777754 56543
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEE--EEeCcchhH-hh---hccCceEEEEe--CChhHHHHHHHHhcCCCc-e--E
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIAS-EI---YNKEYANARIC--GAEKWRKPLAKFLRRPHF-T--V 271 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~--vlsGPn~a~-ev---~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~-~--v 271 (461)
. +.+........+. .-.||+.+. ++ +.|.+..++.. .+.+..+.+.+++...|. + +
T Consensus 112 ~-------------~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv 178 (338)
T 1np3_A 112 H-------------YNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGGGRTGI 178 (338)
T ss_dssp H-------------TTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHHHHHHTTHHHHCE
T ss_pred H-------------HHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHHHHHHHcCCCccce
Confidence 1 1121111111221 115676653 33 33776654442 345667788888888787 3 4
Q ss_pred Eec----C---ChHHHH--HHHHHHHHHHHHH
Q 012547 272 WDN----G---DLVTHE--VMGGLKNVYAIGA 294 (461)
Q Consensus 272 ~~s----~---Di~gve--~~galKNv~Ai~~ 294 (461)
... . |..+.. +||.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~ 210 (338)
T 1np3_A 179 IETTFKDETETDLFGEQAVLCGGCVELVKAGF 210 (338)
T ss_dssp EECCHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred EeechhcccchHHHHHHHHHhhhHHHHHHHHH
Confidence 433 1 244433 5777888887664
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.9e-12 Score=122.12 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=85.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+|||+|||+|+||++++..|+++ ++| .+|+|+++.++.+.+ .+
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-------~~v~~v~~~~~~~~~~~~~----------------------~~------- 45 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-------YEIGYILSRSIDRARNLAE----------------------VY------- 45 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-----------CCCEECSSHHHHHHHHH----------------------HT-------
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHHHH----------------------Hc-------
Confidence 47999999999999999998755 578 599999876543110 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+. .++|++++++++|+||+|||++.++++++++. .+ +++||+++.++.
T Consensus 46 -------------------------g~-~~~~~~~~~~~~DvVilav~~~~~~~v~~~l~---~~---~~ivi~~s~~~~ 93 (276)
T 2i76_A 46 -------------------------GG-KAATLEKHPELNGVVFVIVPDRYIKTVANHLN---LG---DAVLVHCSGFLS 93 (276)
T ss_dssp -------------------------CC-CCCSSCCCCC---CEEECSCTTTHHHHHTTTC---CS---SCCEEECCSSSC
T ss_pred -------------------------CC-ccCCHHHHHhcCCEEEEeCChHHHHHHHHHhc---cC---CCEEEECCCCCc
Confidence 11 33455556778999999999999999998875 33 678888886655
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEec
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN 274 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s 274 (461)
... +++......++...++||....+...+.+. .++++++..+.++++|+..|.+++..
T Consensus 94 ~~~------------l~~~~~~~~~p~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~lG~~~~~v 152 (276)
T 2i76_A 94 SEI------------FKKSGRASIHPNFSFSSLEKALEMKDQIVF--GLEGDERGLPIVKKIAEEISGKYFVI 152 (276)
T ss_dssp GGG------------GCSSSEEEEEECSCC--CTTGGGCGGGCCE--EECCCTTTHHHHHHHHHHHCSCEEEC
T ss_pred HHH------------HHHhhccccchhhhcCCCchhHHHhCCCeE--EEEeChHHHHHHHHHHHHhCCCEEEE
Confidence 431 222111001122224453333332333322 33445555777788887767544433
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-10 Score=125.40 Aligned_cols=181 Identities=13% Similarity=0.099 Sum_probs=111.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..+||+|||+|.||+.||..|+++ | ++|++|+++++.++..... +...++... .+ -.+....
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~a-G-----~~V~l~D~~~~~~~~~~~~-i~~~l~~~~------~~--G~~~~~~--- 374 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSASK-G-----TPILMKDINEHGIEQGLAE-AAKLLVGRV------DK--GRMTPAK--- 374 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHHH-HHHHHHHHH------TT--TSSCHHH---
T ss_pred cCCEEEEECCChhhHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHH-HHHHHHHHH------hc--CCCCHHH---
Confidence 457899999999999999999999 8 9999999999877642110 100110000 00 0010000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--HHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~--~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
. ++. ...+..++|+ +++++||+||+|||.+. .++++.++.+++++ +++++|.+++
T Consensus 375 ----~--~~~-------------~~~i~~~~d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~---~~IlasntSt 431 (715)
T 1wdk_A 375 ----M--AEV-------------LNGIRPTLSY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVRE---DAILASNTST 431 (715)
T ss_dssp ----H--HHH-------------HHHEEEESSS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCT---TCEEEECCSS
T ss_pred ----H--HHH-------------hcCeEEECCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCC---CeEEEeCCCC
Confidence 0 000 0136778888 67899999999999764 67888999988887 7888888877
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeC--ChhHHHHHHHHhcCCCceEEecCCh
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
++.. + +.+.+..+ .++.- .-+-.+. .......++.+. +++..+.+.+++...|..+....|.
T Consensus 432 l~i~-----------~-la~~~~~~-~~~ig-~hf~~P~--~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~ 495 (715)
T 1wdk_A 432 ISIS-----------L-LAKALKRP-ENFVG-MHFFNPV--HMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDC 495 (715)
T ss_dssp SCHH-----------H-HGGGCSCG-GGEEE-EECCSST--TTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCHH-----------H-HHHHhcCc-cceEE-EEccCCc--ccCceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCC
Confidence 7553 2 44544332 23211 1111111 112222223332 6778899999999888777766665
Q ss_pred HH
Q 012547 278 VT 279 (461)
Q Consensus 278 ~g 279 (461)
.|
T Consensus 496 ~G 497 (715)
T 1wdk_A 496 PG 497 (715)
T ss_dssp TT
T ss_pred CC
Confidence 33
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.19 E-value=7e-10 Score=116.80 Aligned_cols=176 Identities=12% Similarity=0.098 Sum_probs=109.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.||++||..|+.+ | ++|++|+++++.++..... +...+.. ++.. +.+.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~-G-----~~V~l~D~~~~~~~~~~~~-i~~~l~~-------------~~~~--g~~~ 94 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV-G-----ISVVAVESDPKQLDAAKKI-ITFTLEK-------------EASR--AHQN 94 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSHHHHHHHHHH-HHHHHHH-------------HHHH--HHHT
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH-HHHHHHH-------------HHHc--CCCC
Confidence 57899999999999999999999 8 9999999999877653321 0000000 0000 0000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.... + .....+++|+ +++++||+||+|||.+ ..+++++++.+++++ +++|++.++++
T Consensus 95 ~~~~---------------~--~~~~~i~~~~-~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~---~~ii~snTs~~ 153 (463)
T 1zcj_A 95 GQAS---------------A--KPKLRFSSST-KELSTVDLVVEAVFEDMNLKKKVFAELSALCKP---GAFLCTNTSAL 153 (463)
T ss_dssp TCCC---------------C--CCCEEEESCG-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSSS
T ss_pred HHHH---------------H--HHHhhhcCCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCC---CeEEEeCCCCc
Confidence 0000 0 0123457788 4689999999999986 467899999998887 78888877665
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEE--EEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCC
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~--vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
... .+.+.+..+ .++. ....|.. ......++.+ .+++..+.+.+++...|..+.+..|
T Consensus 154 ~~~------------~la~~~~~~-~~~ig~hf~~P~~-----~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~ 215 (463)
T 1zcj_A 154 NVD------------DIASSTDRP-QLVIGTHFFSPAH-----VMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGN 215 (463)
T ss_dssp CHH------------HHHTTSSCG-GGEEEEEECSSTT-----TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCC
T ss_pred CHH------------HHHHHhcCC-cceEEeecCCCcc-----cceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECC
Confidence 443 355544432 2221 1122321 1222222332 4678888999998888877776666
Q ss_pred hHH
Q 012547 277 LVT 279 (461)
Q Consensus 277 i~g 279 (461)
..|
T Consensus 216 ~~g 218 (463)
T 1zcj_A 216 CYG 218 (463)
T ss_dssp STT
T ss_pred Ccc
Confidence 443
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-10 Score=115.38 Aligned_cols=156 Identities=9% Similarity=0.086 Sum_probs=101.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.||++||..|.++ | ++|++|+|+++.++... + +
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~-G-----~~V~~~dr~~~~~~~a~---------~--------------~-------- 50 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAA-N-----HSVFGYNRSRSGAKSAV---------D--------------E-------- 50 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSCHHHHHHHH---------H--------------T--------
T ss_pred CCEEEEEeecHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHH---------H--------------c--------
Confidence 57999999999999999999999 8 89999999987554310 0 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc----CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW----DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~----~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
++..++|++++++ ++|+||+|||...+.++++++.++ ++ +++|+.++
T Consensus 51 ------------------------G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl~~l~~~-~~---~~iv~Dv~- 101 (341)
T 3ktd_A 51 ------------------------GFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLLDAVHTH-AP---NNGFTDVV- 101 (341)
T ss_dssp ------------------------TCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHHHHHHHH-CT---TCCEEECC-
T ss_pred ------------------------CCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHHHHHHcc-CC---CCEEEEcC-
Confidence 2234566766654 479999999999999999999986 55 66665543
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcE---EEEe-----CcchhH-hhhccCceEEEEe--CChh--------HHHH
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENI---LYLG-----GPNIAS-EIYNKEYANARIC--GAEK--------WRKP 259 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v---~vls-----GPn~a~-ev~~g~~~~~~~~--~~~~--------~~~~ 259 (461)
++... +.+.+.+.+. ..++ .-+. ||..+. ++..+.+..++.. .+++ ..+.
T Consensus 102 Svk~~---------i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~ 170 (341)
T 3ktd_A 102 SVKTA---------VYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKD 170 (341)
T ss_dssp SCSHH---------HHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCCCHHHHHHHHH
T ss_pred CCChH---------HHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhhccchHHHHHH
Confidence 33222 1123333321 1111 1233 333332 3445554443332 2345 6789
Q ss_pred HHHHhcCCCceEEecC
Q 012547 260 LAKFLRRPHFTVWDNG 275 (461)
Q Consensus 260 l~~ll~~~g~~v~~s~ 275 (461)
+.++|+..|.+++..+
T Consensus 171 v~~l~~~~Ga~v~~~~ 186 (341)
T 3ktd_A 171 VVQMALAVGAEVVPSR 186 (341)
T ss_dssp HHHHHHHTTCEEEECC
T ss_pred HHHHHHHcCCEEEEeC
Confidence 9999999997766543
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-09 Score=113.12 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=103.1
Q ss_pred ceEEEECccHHHHHHHHHHHHh-----cCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDS-----YGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~-----~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
+||+|||.|+||.++|..|.++ .| ++|.++.|+....... ...
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G-----~~ViVg~r~~sks~e~--------A~e------------------- 102 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSD-----IVVKIGLRKGSKSFDE--------ARA------------------- 102 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCC-----CEEEEEECTTCSCHHH--------HHH-------------------
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCC-----CEEEEEeCCchhhHHH--------HHH-------------------
Confidence 6899999999999999999875 14 7888777764322110 000
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.|+.. ......++++++++||+||++||.....+++++|.+++++ +++ |+++.
T Consensus 103 ---------------~G~~v--------~d~ta~s~aEAa~~ADVVILaVP~~~~~eVl~eI~p~LK~---GaI-Ls~Aa 155 (525)
T 3fr7_A 103 ---------------AGFTE--------ESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKP---NSI-LGLSH 155 (525)
T ss_dssp ---------------TTCCT--------TTTCEEEHHHHHHHCSEEEECSCHHHHHHHHHHHHHHSCT---TCE-EEESS
T ss_pred ---------------CCCEE--------ecCCCCCHHHHHhcCCEEEECCChHHHHHHHHHHHHhcCC---CCe-EEEeC
Confidence 01000 0011246788999999999999999888999999999987 565 78888
Q ss_pred cCccccccccccCCHHHHHHh---HhCCCCCcEEEEeCcchhHhh-------h-----ccCceEEEEeC--ChhHHHHHH
Q 012547 199 GVEAELEAVPRIITPTQMINR---ATGVPIENILYLGGPNIASEI-------Y-----NKEYANARICG--AEKWRKPLA 261 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~---~lg~~~~~v~vlsGPn~a~ev-------~-----~g~~~~~~~~~--~~~~~~~l~ 261 (461)
|+... .+.+ .++. .. -+++.+||.+-.+ + .|.++.+.+.. +.+..+.+.
T Consensus 156 Gf~I~------------~le~~~i~~p~-dv-~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~al 221 (525)
T 3fr7_A 156 GFLLG------------HLQSAGLDFPK-NI-SVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVAL 221 (525)
T ss_dssp SHHHH------------HHHHTTCCCCT-TS-EEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHH
T ss_pred CCCHH------------HHhhhcccCCC-CC-cEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHH
Confidence 98754 3443 2221 12 3678899887765 3 56665554433 345667777
Q ss_pred HHhcCCCce
Q 012547 262 KFLRRPHFT 270 (461)
Q Consensus 262 ~ll~~~g~~ 270 (461)
+++...|..
T Consensus 222 ala~aiG~~ 230 (525)
T 3fr7_A 222 GWSVALGSP 230 (525)
T ss_dssp HHHHHTTCS
T ss_pred HHHHHCCCC
Confidence 777776654
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-09 Score=105.21 Aligned_cols=106 Identities=12% Similarity=0.180 Sum_probs=76.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+|||+|||+|+||+++|..|+.+ | + +|.+|+++++.++....+ +... + .++.
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~-g-----~~~V~L~D~~~~~~~~~~~~-----l~~~---------~-~~~~------ 61 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALR-E-----LADVVLYDVVKGMPEGKALD-----LSHV---------T-SVVD------ 61 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSSSSHHHHHHHH-----HHHH---------H-HHTT------
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEECChhHHHHHHHH-----HHhh---------h-hccC------
Confidence 48999999999999999999999 8 6 899999998776641110 1100 1 0111
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cch-------------------hHHHHHHHH
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST-------------------ETKEVFEEI 180 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps~-------------------~~~~vl~~i 180 (461)
. ...+.+++|+++++++||+||+++ |.. .++++++++
T Consensus 62 ----~------------------~~~i~~t~d~~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i 119 (331)
T 1pzg_A 62 ----T------------------NVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI 119 (331)
T ss_dssp ----C------------------CCCEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHH
T ss_pred ----C------------------CCEEEEeCCHHHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 025788899988899999999998 532 277788888
Q ss_pred HHHhhccCCCCEEEEEeecCc
Q 012547 181 SRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 181 ~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.++. + +.+++..+|-.+
T Consensus 120 ~~~~-p---~a~vi~~tNP~~ 136 (331)
T 1pzg_A 120 KKYC-P---KTFIIVVTNPLD 136 (331)
T ss_dssp HHHC-T---TCEEEECCSSHH
T ss_pred HHHC-C---CcEEEEEcCchH
Confidence 8876 3 577776776543
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-09 Score=106.35 Aligned_cols=107 Identities=17% Similarity=0.294 Sum_probs=74.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
++|||+|||+|+||+++|..|+.+ | + +|++|+|++++++... + + ++. . . .+..
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~-g-----~~~~V~l~d~~~~~~~~~~---~-~-~~~-~--------~-~~~~---- 60 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQR-G-----IAREIVLEDIAKERVEAEV---L-D-MQH-G--------S-SFYP---- 60 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-T-----CCSEEEEECSSHHHHHHHH---H-H-HHH-T--------G-GGST----
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CCCEEEEEeCChhHHHHHH---H-H-HHh-h--------h-hhcC----
Confidence 458999999999999999999998 7 7 9999999976554100 0 0 011 0 0 0100
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh----------------HHHHHHHHHHH
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------------TKEVFEEISRY 183 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~----------------~~~vl~~i~~~ 183 (461)
+ ..+..+++. +++++||+||++++... ++++++++.++
T Consensus 61 ---~----------------------~~v~~~~~~-~~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~ 114 (319)
T 1lld_A 61 ---T----------------------VSIDGSDDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV 114 (319)
T ss_dssp ---T----------------------CEEEEESCG-GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---C----------------------eEEEeCCCH-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 134555565 46889999999996543 33788888885
Q ss_pred hhccCCCCEEEEEeecCccc
Q 012547 184 WKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 184 l~~~~~~~iIIs~tkGi~~~ 203 (461)
.+ +++|++++||++..
T Consensus 115 -~~---~~~vi~~~Np~~~~ 130 (319)
T 1lld_A 115 -AP---NAIYMLITNPVDIA 130 (319)
T ss_dssp -CT---TSEEEECCSSHHHH
T ss_pred -CC---CceEEEecCchHHH
Confidence 44 68899999999765
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.93 E-value=6.2e-09 Score=104.01 Aligned_cols=123 Identities=11% Similarity=0.216 Sum_probs=85.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++|||+|||+|+||+++|..|+.+ | + +|.+|+++++.++....+ +... +. +..
T Consensus 3 ~~~kI~VIGaG~~G~~ia~~la~~-g-----~~~V~l~D~~~~~~~~~~~~-----l~~~---------~~-~~~----- 56 (317)
T 2ewd_A 3 ERRKIAVIGSGQIGGNIAYIVGKD-N-----LADVVLFDIAEGIPQGKALD-----ITHS---------MV-MFG----- 56 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSSSSHHHHHHHH-----HHHH---------HH-HHT-----
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CceEEEEeCCchHHHHHHHH-----HHhh---------hh-hcC-----
Confidence 358999999999999999999999 8 6 899999998766532100 0000 00 000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--------------C--chhHHHHHHHHHHHh
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--------------P--STETKEVFEEISRYW 184 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--------------p--s~~~~~vl~~i~~~l 184 (461)
. ...+..++|+ +++++||+||+++ | ...++++++++.++.
T Consensus 57 -----~------------------~~~i~~t~d~-~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~ 112 (317)
T 2ewd_A 57 -----S------------------TSKVIGTDDY-ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC 112 (317)
T ss_dssp -----C------------------CCCEEEESCG-GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC
T ss_pred -----C------------------CcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC
Confidence 0 0146777888 6789999999999 3 245788889998875
Q ss_pred hccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 185 KERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 185 ~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+ +++++.++|+.... ...+++..+.|..++
T Consensus 113 ~----~~iii~~sNp~~~~----------~~~~~~~~~~~~~rv 142 (317)
T 2ewd_A 113 P----NAFVICITNPLDVM----------VSHFQKVSGLPHNKV 142 (317)
T ss_dssp T----TSEEEECCSSHHHH----------HHHHHHHHCCCGGGE
T ss_pred C----CcEEEEeCChHHHH----------HHHHHHhhCCCHHHE
Confidence 4 57888899876542 345666666543453
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-08 Score=101.56 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=74.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|+.+ |. .++|.+|++++++++.+..+ +.. . +. +++
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~-g~---~~~V~l~d~~~~~~~~~~~~-----l~~-~--------~~-~~~-------- 54 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQ-GV---ADDYVFIDANEAKVKADQID-----FQD-A--------MA-NLE-------- 54 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TC---CSEEEEECSSHHHHHHHHHH-----HHH-H--------GG-GSS--------
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CC---CCEEEEEcCCHHHHHHHHHH-----HHh-h--------hh-hcC--------
Confidence 7999999999999999999998 73 16899999998766542211 110 0 00 110
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEE-ecCHHHHhcCCCEEEEcCCchh--------------------HHHHHHHHHH
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKV-VTNLQEAVWDADIVINGLPSTE--------------------TKEVFEEISR 182 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~dl~~av~~aDiIIiaVps~~--------------------~~~vl~~i~~ 182 (461)
..+.+ ++|+ +++++||+||+++|+.. ++++++++.+
T Consensus 55 ----------------------~~~~~~~~d~-~~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~ 111 (309)
T 1hyh_A 55 ----------------------AHGNIVINDW-AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKE 111 (309)
T ss_dssp ----------------------SCCEEEESCG-GGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCeEEEeCCH-HHhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 02333 5677 67899999999999765 4788888877
Q ss_pred HhhccCCCCEEEEEeecCcc
Q 012547 183 YWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 183 ~l~~~~~~~iIIs~tkGi~~ 202 (461)
+.. ++.++.++|+++.
T Consensus 112 ~~~----~~~ii~~tNp~~~ 127 (309)
T 1hyh_A 112 SGF----HGVLVVISNPVDV 127 (309)
T ss_dssp TTC----CSEEEECSSSHHH
T ss_pred HCC----CcEEEEEcCcHHH
Confidence 653 5677889998765
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-08 Score=102.08 Aligned_cols=105 Identities=17% Similarity=0.233 Sum_probs=74.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+|||+|||+|.||+++|..|+.+ | + +|.+|+++++.++.... . +... +. ++.
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~-g-----~~~V~L~Di~~~~l~~~~~-~----l~~~---------~~-~~~------ 66 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQK-D-----LGDVYMFDIIEGVPQGKAL-D----LNHC---------MA-LIG------ 66 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSTTHHHHHHH-H----HHHH---------HH-HHT------
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEECCHHHHHHHHH-H----HHhH---------hh-ccC------
Confidence 47999999999999999999998 8 6 89999999877663110 0 1110 00 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cc--------------hhHHHHHHHHHHHhh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps--------------~~~~~vl~~i~~~l~ 185 (461)
. ...+..++|+ +++++||+||+++ |. ..++++++++.++.
T Consensus 67 ----~------------------~~~i~~t~d~-~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~- 122 (328)
T 2hjr_A 67 ----S------------------PAKIFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC- 122 (328)
T ss_dssp ----C------------------CCCEEEESCG-GGGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-
T ss_pred ----C------------------CCEEEECCCH-HHHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-
Confidence 0 0257888898 7799999999998 43 23777888888876
Q ss_pred ccCCCCEEEEEeecCc
Q 012547 186 ERITVPVIISLAKGVE 201 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~ 201 (461)
+ +.+++.++|.+.
T Consensus 123 p---~a~viv~tNP~~ 135 (328)
T 2hjr_A 123 P---NAFVICITNPLD 135 (328)
T ss_dssp T---TCEEEECCSSHH
T ss_pred C---CeEEEEecCchH
Confidence 4 567776777543
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=8.8e-08 Score=106.14 Aligned_cols=177 Identities=13% Similarity=0.118 Sum_probs=115.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.||+|||+|.||+.||..++.+ | ++|++++++++.++...+ .+...++.... + ..... .
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~a-G-----~~V~l~D~~~~~l~~~~~-~i~~~l~~~~~------~--~~~~~------~ 375 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARV-G-----ISVVAVESDPKQLDAAKK-IITFTLEKEAS------R--AHQNG------Q 375 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSHHHHHHHHH-HHHHHHHHHHH------H--HHTTT------C
T ss_pred cEEEEEcccHHHHHHHHHHHhC-C-----CchhcccchHhhhhhHHH-HHHHHHHHHHH------h--ccccc------h
Confidence 6999999999999999999999 8 999999999987765332 11111111100 0 00000 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+.....+..++|.++ +++||+||.||+.. ..+++++++.+++++ ++++.|.|.+++
T Consensus 376 ------------------~~~~~~~~~~~~~~~-l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~---~aIlASNTSsl~ 433 (742)
T 3zwc_A 376 ------------------ASAKPKLRFSSSTKE-LSTVDLVVEAVFEDMNLKKKVFAELSALCKP---GAFLCTNTSALN 433 (742)
T ss_dssp ------------------CCCCCCEEEESCGGG-GGSCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSSSC
T ss_pred ------------------hhhhhhhcccCcHHH-HhhCCEEEEeccccHHHHHHHHHHHhhcCCC---CceEEecCCcCC
Confidence 001235778888765 79999999999975 788999999999998 788888887776
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
.. + |.+.+..| .+++.+ .|...+..-....++.+ .+++..+.+.++....|....+..|.-|
T Consensus 434 i~-----------~-ia~~~~~p-~r~ig~---HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~pG 497 (742)
T 3zwc_A 434 VD-----------D-IASSTDRP-QLVIGT---HFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYG 497 (742)
T ss_dssp HH-----------H-HHTTSSCG-GGEEEE---ECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEECCCSTT
T ss_pred hH-----------H-HHhhcCCc-cccccc---cccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCCcccCCCCC
Confidence 54 3 55555543 343222 22111111122233322 3567788888888888887777778555
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=3.4e-08 Score=98.93 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=72.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
|||+|||+|+||+++|..|+.+ | + +|.+|++++++++.+.. .+... .+ +..
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~-g-----~~~~V~l~D~~~~~~~~~~~-----~l~~~---------~~-~~~------ 53 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK-G-----FAREMVLIDVDKKRAEGDAL-----DLIHG---------TP-FTR------ 53 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-T-----CCSEEEEECSSHHHHHHHHH-----HHHHH---------GG-GSC------
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CCCeEEEEeCChHHHHHHHH-----HHHhh---------hh-hcC------
Confidence 7999999999999999999999 8 6 99999999876654211 01100 00 110
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh----------------HHHHHHHHHHHhh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------------TKEVFEEISRYWK 185 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~----------------~~~vl~~i~~~l~ 185 (461)
. ..+.. +|. +++++||+||+++|... ++++++++.++.
T Consensus 54 -~----------------------~~i~~-~d~-~~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~- 107 (319)
T 1a5z_A 54 -R----------------------ANIYA-GDY-ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA- 107 (319)
T ss_dssp -C----------------------CEEEE-CCG-GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -C----------------------cEEEe-CCH-HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-
Confidence 0 12444 464 56899999999998633 577888888775
Q ss_pred ccCCCCEEEEEeecCcc
Q 012547 186 ERITVPVIISLAKGVEA 202 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~~ 202 (461)
+ ++.+|.++|++..
T Consensus 108 ~---~~~ii~~tNp~~~ 121 (319)
T 1a5z_A 108 P---DSIVIVVTNPVDV 121 (319)
T ss_dssp T---TCEEEECSSSHHH
T ss_pred C---CeEEEEeCCcHHH
Confidence 3 5778888888764
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=7.2e-08 Score=96.13 Aligned_cols=107 Identities=16% Similarity=0.104 Sum_probs=72.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|+.+ +. .++|.+|++++++++.+.. -+... .+.. ..
T Consensus 1 mkI~VIGaG~vG~~la~~la~~-~~---g~~V~l~D~~~~~~~~~~~-----~l~~~-------------~~~~----~~ 54 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEK-QL---ARELVLLDVVEGIPQGKAL-----DMYES-------------GPVG----LF 54 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TC---CSEEEEECSSSSHHHHHHH-----HHHTT-------------HHHH----TC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CC---CCEEEEEeCChhHHHHHHH-----hHHhh-------------hhcc----cC
Confidence 7999999999999999999985 21 1899999999876653211 01100 0000 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch----------------hHHHHHHHHHHHhhcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWKER 187 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~----------------~~~~vl~~i~~~l~~~ 187 (461)
...+.+++|+++ +++||+||+++|.. .++++++.+.++. +
T Consensus 55 ---------------------~~~i~~t~d~~~-l~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~- 110 (310)
T 1guz_A 55 ---------------------DTKVTGSNDYAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-K- 110 (310)
T ss_dssp ---------------------CCEEEEESCGGG-GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-S-
T ss_pred ---------------------CcEEEECCCHHH-HCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-C-
Confidence 014677788876 89999999999642 2356666666664 3
Q ss_pred CCCCEEEEEeecCcc
Q 012547 188 ITVPVIISLAKGVEA 202 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~ 202 (461)
+..++.++|++..
T Consensus 111 --~~~viv~tNP~~~ 123 (310)
T 1guz_A 111 --NPIIIVVSNPLDI 123 (310)
T ss_dssp --SCEEEECCSSHHH
T ss_pred --CcEEEEEcCchHH
Confidence 5677778887653
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.8e-08 Score=93.80 Aligned_cols=129 Identities=9% Similarity=0.075 Sum_probs=87.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..|||+|||+|.||++||..|.++ | ++|+.|++.+
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~-G-----~~V~~~~~~~--------------------------------------- 39 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSV-G-----HYVTVLHAPE--------------------------------------- 39 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHT-T-----CEEEECSSGG---------------------------------------
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEecCHH---------------------------------------
Confidence 458999999999999999999999 8 8999987631
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+ +.+|| |+|||.+.+.++++++.+++++ ++++++++-.+.
T Consensus 40 ----------------------------------~-~~~aD--ilavP~~ai~~vl~~l~~~l~~---g~ivvd~sgs~~ 79 (232)
T 3dfu_A 40 ----------------------------------D-IRDFE--LVVIDAHGVEGYVEKLSAFARR---GQMFLHTSLTHG 79 (232)
T ss_dssp ----------------------------------G-GGGCS--EEEECSSCHHHHHHHHHTTCCT---TCEEEECCSSCC
T ss_pred ----------------------------------H-hccCC--EEEEcHHHHHHHHHHHHHhcCC---CCEEEEECCcCH
Confidence 0 23578 9999999999999999998877 688887763332
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCC
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
.. ++....... ..+ +-.-|-+ +. ..+....+++..+.+++++...|-+++..++
T Consensus 80 ~~------------vl~~~~~~g-~~f-vg~HPm~------g~-~~~i~a~d~~a~~~l~~L~~~lG~~vv~~~~ 133 (232)
T 3dfu_A 80 IT------------VMDPLETSG-GIV-MSAHPIG------QD-RWVASALDELGETIVGLLVGELGGSIVEIAD 133 (232)
T ss_dssp GG------------GGHHHHHTT-CEE-EEEEEEE------TT-EEEEEESSHHHHHHHHHHHHHTTCEECCCCG
T ss_pred HH------------HHHHHHhCC-CcE-EEeeeCC------CC-ceeeeCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 22 222222111 111 1112332 21 2223344667788899999988888776654
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-07 Score=94.56 Aligned_cols=123 Identities=11% Similarity=0.072 Sum_probs=78.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.||+++|..|+.+ |.. .+|.+|+++++.++... ++-.+ .++ +++.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~-~~~---~~v~L~D~~~~~~~g~~-------~dl~~-------~~~-~~~~------- 54 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLN-LDV---DEIALVDIAEDLAVGEA-------MDLAH-------AAA-GIDK------- 54 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-SCC---SEEEEECSSHHHHHHHH-------HHHHH-------HHH-TTTC-------
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCC---CeEEEEECChHHHHHHH-------HHHHh-------hhh-hcCC-------
Confidence 7999999999999999999998 721 28999999987765211 11111 011 1110
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch----------------hHHHHHHHHHHHhhcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWKER 187 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~----------------~~~~vl~~i~~~l~~~ 187 (461)
...+.+++| .+++++||+||++.... .++++.+.+..+ .+
T Consensus 55 ---------------------~~~i~~t~d-~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p- 110 (294)
T 1oju_A 55 ---------------------YPKIVGGAD-YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-AP- 110 (294)
T ss_dssp ---------------------CCEEEEESC-GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-ST-
T ss_pred ---------------------CCEEEEeCC-HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CC-
Confidence 014677778 67899999999987421 244444555554 23
Q ss_pred CCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+.+++.++|-++. +..++++..+.|..++
T Consensus 111 --~a~iivvsNPvd~----------~t~~~~k~~g~p~~rv 139 (294)
T 1oju_A 111 --ESKILVVTNPMDV----------MTYIMWKESGKPRNEV 139 (294)
T ss_dssp --TCEEEECSSSHHH----------HHHHHHHHSCCCTTSE
T ss_pred --CeEEEEeCCcchH----------HHHHHHHhcCCCHHHE
Confidence 5778878876543 2355666666554453
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-07 Score=94.18 Aligned_cols=106 Identities=16% Similarity=0.174 Sum_probs=74.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.+|||+|||+|.||+++|..|+.. | + +|.+|++++++++.... .++.. +...
T Consensus 3 ~~~kI~VIGaG~vG~~ia~~la~~-g-----~~~v~L~Di~~~~l~~~~~-----~l~~~-------------~~~~--- 55 (322)
T 1t2d_A 3 PKAKIVLVGSGMIGGVMATLIVQK-N-----LGDVVLFDIVKNMPHGKAL-----DTSHT-------------NVMA--- 55 (322)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSSSHHHHHHH-----HHHTH-------------HHHH---
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEeCCHHHHHHHHH-----HHHhh-------------hhhc---
Confidence 357999999999999999999998 7 5 79999999877653111 11110 0000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cch-------------------hHHHHHHH
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST-------------------ETKEVFEE 179 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps~-------------------~~~~vl~~ 179 (461)
.. ...+..++|+ +++++||+||+++ |.. .+++++++
T Consensus 56 -~~---------------------~~~i~~t~d~-~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~ 112 (322)
T 1t2d_A 56 -YS---------------------NCKVSGSNTY-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGH 112 (322)
T ss_dssp -TC---------------------CCCEEEECCG-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHH
T ss_pred -CC---------------------CcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 00 0257778898 7799999999998 531 47777788
Q ss_pred HHHHhhccCCCCEEEEEeecCc
Q 012547 180 ISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 180 i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+.++. + +.+++.++|-..
T Consensus 113 i~~~~-p---~a~iiv~tNP~~ 130 (322)
T 1t2d_A 113 IKKNC-P---NAFIIVVTNPVD 130 (322)
T ss_dssp HHHHC-T---TSEEEECSSSHH
T ss_pred HHHHC-C---CeEEEEecCChH
Confidence 88776 4 577776776543
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=93.81 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=69.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
|||+|||+|.||+++|..|+.. | + +|.+|++++++++... .+-.+ .++ +..
T Consensus 1 mkI~VIGaG~vG~~la~~la~~-g-----~~~eV~L~D~~~~~~~~~~-------~~l~~-------~~~-~~~------ 53 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLR-G-----SCSELVLVDRDEDRAQAEA-------EDIAH-------AAP-VSH------ 53 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CCSEEEEECSSHHHHHHHH-------HHHTT-------SCC-TTS------
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CCCEEEEEeCCHHHHHHHH-------Hhhhh-------hhh-hcC------
Confidence 6999999999999999999998 7 6 8999999986554210 00000 000 110
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch----------------hHHHHHHHHHHHhh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWK 185 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~----------------~~~~vl~~i~~~l~ 185 (461)
+ ..+.. ++. +++++||+||++++.. .++++++++.++.
T Consensus 54 -~----------------------~~i~~-~~~-~a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~- 107 (304)
T 2v6b_A 54 -G----------------------TRVWH-GGH-SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA- 107 (304)
T ss_dssp -C----------------------CEEEE-ECG-GGGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-
T ss_pred -C----------------------eEEEE-CCH-HHhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-
Confidence 0 12333 454 5789999999999533 3477888888874
Q ss_pred ccCCCCEEEEEeecCcc
Q 012547 186 ERITVPVIISLAKGVEA 202 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~~ 202 (461)
+ +++++.++|+.+.
T Consensus 108 p---~~~vi~~tNP~~~ 121 (304)
T 2v6b_A 108 P---DAVLLVTSNPVDL 121 (304)
T ss_dssp S---SSEEEECSSSHHH
T ss_pred C---CeEEEEecCchHH
Confidence 4 5777778988754
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.4e-07 Score=97.75 Aligned_cols=111 Identities=15% Similarity=0.226 Sum_probs=76.1
Q ss_pred CceEEEECccHH-HHHHHHHHHHhc-CCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAW-GSVFTAMLQDSY-GYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGam-G~alA~~La~~~-G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+|||+|||+|+| |+++|..|+.+. + + +.++|.||++++++++.++. . .. .+++...
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~-l-~~~eV~L~Di~~e~~~~~~~-----~-~~------------~~l~~~~-- 85 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEE-F-PIRKLKLYDNDKERQDRIAG-----A-CD------------VFIREKA-- 85 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTT-S-CEEEEEEECSCHHHHHHHHH-----H-HH------------HHHHHHC--
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCC-C-CCCEEEEEeCCHHHHHHHHH-----H-HH------------HHhccCC--
Confidence 469999999999 777887777651 1 1 01789999999987765321 0 00 1222210
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh----------------------------
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE---------------------------- 172 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~---------------------------- 172 (461)
+ ...+.+++|+++++++||+||+++|+..
T Consensus 86 -----~------------------~~~I~~t~D~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~ 142 (472)
T 1u8x_X 86 -----P------------------DIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIA 142 (472)
T ss_dssp -----T------------------TSEEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHH
T ss_pred -----C------------------CCEEEEECCHHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHH
Confidence 1 0257888999889999999999999842
Q ss_pred --------HHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 173 --------TKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 173 --------~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
+.++++++.++.. ++.++..+|-++.
T Consensus 143 ~~~rni~i~~~i~~~i~~~~P----~A~ii~~TNPvdi 176 (472)
T 1u8x_X 143 YGMRSIGGVLEILDYMEKYSP----DAWMLNYSNPAAI 176 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT----TCEEEECCSCHHH
T ss_pred HHhhhHHHHHHHHHHHHHHCC----CeEEEEeCCcHHH
Confidence 4566666666654 5788888887754
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.5e-07 Score=93.40 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=72.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..++|+|||+|.||.++|..+... | .+|.+|+|+.+..+
T Consensus 163 ~g~~vgIIG~G~iG~~vA~~l~~~-G-----~~V~~~dr~~~~~~----------------------------------- 201 (333)
T 3ba1_A 163 SGKRVGIIGLGRIGLAVAERAEAF-D-----CPISYFSRSKKPNT----------------------------------- 201 (333)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSCCTTC-----------------------------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCchhcc-----------------------------------
Confidence 447999999999999999999987 7 89999998864210
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
+.....++++++++||+|++++|.. .++.++ ++..+.+++ ++++|.++.|
T Consensus 202 -------------------------g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~---gailIn~srG 253 (333)
T 3ba1_A 202 -------------------------NYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGP---KGVLINIGRG 253 (333)
T ss_dssp -------------------------CSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCT---TCEEEECSCG
T ss_pred -------------------------CceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCC---CCEEEECCCC
Confidence 1223467888899999999999975 566666 345556676 7899999988
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
-..+
T Consensus 254 ~~vd 257 (333)
T 3ba1_A 254 PHVD 257 (333)
T ss_dssp GGBC
T ss_pred chhC
Confidence 6654
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.47 E-value=6.2e-07 Score=94.64 Aligned_cols=83 Identities=22% Similarity=0.254 Sum_probs=57.0
Q ss_pred CceEEEECccH--HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGA--WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGa--mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+|||+|||+|+ ||+++|..|+...+ + +.++|.+|++++++++.+... . ..+++...
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~-l-~~~eV~L~Di~~e~l~~~~~~-----~-------------~~~l~~~~-- 60 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPG-L-SGSTVTLMDIDEERLDAILTI-----A-------------KKYVEEVG-- 60 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGG-G-TTCEEEEECSCHHHHHHHHHH-----H-------------HHHHHHTT--
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCc-C-CCCEEEEEeCCHHHHHHHHHH-----H-------------HHHhccCC--
Confidence 47999999999 57888888874211 0 017999999999877653221 0 01222110
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS 170 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps 170 (461)
. ...+.+++|+++++++||+||+++|+
T Consensus 61 -----~------------------~~~I~~ttD~~eal~dAD~VIiaagv 87 (480)
T 1obb_A 61 -----A------------------DLKFEKTMNLDDVIIDADFVINTAMV 87 (480)
T ss_dssp -----C------------------CCEEEEESCHHHHHTTCSEEEECCCT
T ss_pred -----C------------------CcEEEEECCHHHHhCCCCEEEECCCc
Confidence 0 02578889998889999999999986
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-06 Score=86.99 Aligned_cols=122 Identities=14% Similarity=0.186 Sum_probs=79.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+|||+|||+|.||+++|..|+.. | + +|.+|++++++++.... + ++.. +. ++.
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~-~-----~~~v~L~Di~~~~~~g~~~----d-l~~~---------~~-~~~------ 59 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLK-E-----LGDVVLFDIAEGTPQGKGL----D-IAES---------SP-VDG------ 59 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSSSHHHHHHH----H-HHHH---------HH-HHT------
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEeCCchhHHHHHH----H-Hhch---------hh-hcC------
Confidence 47999999999999999999998 7 6 99999999877653110 0 1110 00 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHhh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWK 185 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l~ 185 (461)
. ...+.+++|. +++++||+||++... ..++++.+.+..+.
T Consensus 60 ----~------------------~~~v~~t~d~-~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~- 115 (324)
T 3gvi_A 60 ----F------------------DAKFTGANDY-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA- 115 (324)
T ss_dssp ----C------------------CCCEEEESSG-GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ----C------------------CCEEEEeCCH-HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-
Confidence 0 0146777887 679999999999742 12455556666654
Q ss_pred ccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 186 ERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+ +.+++.++|-+..- ..++++..+.|..++
T Consensus 116 p---~a~iivvtNPvd~~----------t~~~~k~sg~p~~rv 145 (324)
T 3gvi_A 116 P---EAFVICITNPLDAM----------VWALQKFSGLPAHKV 145 (324)
T ss_dssp T---TCEEEECCSSHHHH----------HHHHHHHHCCCGGGE
T ss_pred C---CeEEEecCCCcHHH----------HHHHHHhcCCCHHHE
Confidence 3 57888888765432 244555555544443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-06 Score=86.56 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=69.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+|||+|||+|.||+.+|..|+.. | + +|.++++++++++... .+ +... ....
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~-g-----~~~v~L~Di~~~~~~g~~----~d-l~~~-------------~~~~---- 53 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAK-E-----LGDIVLLDIVEGVPQGKA----LD-LYEA-------------SPIE---- 53 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEECSSSSHHHHHH----HH-HHTT-------------HHHH----
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CCeEEEEeCCccHHHHHH----Hh-HHHh-------------Hhhc----
Confidence 37999999999999999999988 7 4 7999999987664211 00 1110 0000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHhh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWK 185 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l~ 185 (461)
. ....+..++|. +++++||+||+++.. ..++++++.+.++.
T Consensus 54 ~---------------------~~~~i~~t~d~-~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~- 110 (309)
T 1ur5_A 54 G---------------------FDVRVTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS- 110 (309)
T ss_dssp T---------------------CCCCEEEESCG-GGGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-
T ss_pred C---------------------CCeEEEECCCH-HHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-
Confidence 0 00246777888 679999999999832 12345556666554
Q ss_pred ccCCCCEEEEEeecCc
Q 012547 186 ERITVPVIISLAKGVE 201 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~ 201 (461)
+ +.+++..+|-+.
T Consensus 111 p---~a~vi~~tNPv~ 123 (309)
T 1ur5_A 111 P---NAVIIMVNNPLD 123 (309)
T ss_dssp T---TCEEEECCSSHH
T ss_pred C---CeEEEEcCCchH
Confidence 3 567777777554
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-06 Score=85.47 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=77.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.++||+|||+|.||+++|..++.. |++ .+|.|+|++++ +.... .++. ...
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~-g~~---~ev~L~Di~~~-~~g~a----~dl~------------------~~~--- 62 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAK-GIA---DRLVLLDLSEG-TKGAT----MDLE------------------IFN--- 62 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECCC------CH----HHHH------------------HHT---
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEcCCcc-hHHHH----HHHh------------------hhc---
Confidence 457999999999999999999998 721 28999999875 32100 0010 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc---------------hhHHHHHHHHHHHhhc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS---------------TETKEVFEEISRYWKE 186 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps---------------~~~~~vl~~i~~~l~~ 186 (461)
...+..++|+ +++++||+||+++-. ..++++++++..+. +
T Consensus 63 -----------------------~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p 117 (303)
T 2i6t_A 63 -----------------------LPNVEISKDL-SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-Q 117 (303)
T ss_dssp -----------------------CTTEEEESCG-GGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred -----------------------CCCeEEeCCH-HHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 0146677888 679999999999721 23677788888876 4
Q ss_pred cCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 187 ~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+.+++.++|-+.. +++++++..+.|..++
T Consensus 118 ---~a~iiv~sNP~~~----------~t~~~~~~~~~p~~rv 146 (303)
T 2i6t_A 118 ---HSVLLVASQPVEI----------MTYVTWKLSTFPANRV 146 (303)
T ss_dssp ---TCEEEECSSSHHH----------HHHHHHHHHCCCGGGE
T ss_pred ---CeEEEEcCChHHH----------HHHHHHHhcCCCHHHe
Confidence 5777778885542 3456666655544453
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.5e-06 Score=85.23 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=69.8
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+.+++||+|||+|.+|+++|..++.. |.. .+|.++|++++.++... .++... . .++.
T Consensus 3 ~~~~~kI~IIGaG~vG~sla~~l~~~-~~~---~ev~l~Di~~~~~~~~~----~dl~~~----------~-~~~~---- 59 (316)
T 1ldn_A 3 NNGGARVVVIGAGFVGASYVFALMNQ-GIA---DEIVLIDANESKAIGDA----MDFNHG----------K-VFAP---- 59 (316)
T ss_dssp TTTSCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHHHHH----HHHHHH----------T-TSSS----
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhC-CCC---CEEEEEeCCcchHHHHH----hhHHHH----------h-hhcC----
Confidence 44568999999999999999999888 632 48999999976443210 011100 0 0010
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch----------------hHHHHHHHHHHH
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRY 183 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~----------------~~~~vl~~i~~~ 183 (461)
.+++++++..+++++||+||++++.. .++++++.+.++
T Consensus 60 --------------------------~~~~i~~~~~~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~ 113 (316)
T 1ldn_A 60 --------------------------KPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS 113 (316)
T ss_dssp --------------------------SCCEEEECCGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCeEEEcCcHHHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH
Confidence 02333344456799999999997542 355666666666
Q ss_pred hhccCCCCEEEEEeecCc
Q 012547 184 WKERITVPVIISLAKGVE 201 (461)
Q Consensus 184 l~~~~~~~iIIs~tkGi~ 201 (461)
.. +..++..+|-+.
T Consensus 114 ~p----~a~~iv~tNPv~ 127 (316)
T 1ldn_A 114 GF----QGLFLVATNPVD 127 (316)
T ss_dssp TC----CSEEEECSSSHH
T ss_pred CC----CCEEEEeCCchH
Confidence 43 566777777654
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=5e-07 Score=91.09 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=72.8
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
...|+|+|||+|.||.++|..++.. | ++|.+|+|+.+. +.. . ..
T Consensus 148 l~g~~vgIIG~G~iG~~iA~~l~~~-G-----~~V~~~d~~~~~-~~~---------~-----------------~~--- 191 (334)
T 2dbq_A 148 VYGKTIGIIGLGRIGQAIAKRAKGF-N-----MRILYYSRTRKE-EVE---------R-----------------EL--- 191 (334)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCH-HHH---------H-----------------HH---
T ss_pred CCCCEEEEEccCHHHHHHHHHHHhC-C-----CEEEEECCCcch-hhH---------h-----------------hc---
Confidence 3458999999999999999999988 8 899999998754 210 0 00
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh-HHHHH-HHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~-~~~vl-~~i~~~l~~~~~~~iIIs~tk 198 (461)
++.. .++++++++||+|++++|... ++.++ +++.+.+++ ++++|.+++
T Consensus 192 --------------------------g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~---~ailIn~sr 241 (334)
T 2dbq_A 192 --------------------------NAEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKK---TAILINIAR 241 (334)
T ss_dssp --------------------------CCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCT---TCEEEECSC
T ss_pred --------------------------Cccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCC---CcEEEECCC
Confidence 1233 477888899999999999765 55555 456666776 789999998
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
|-..+
T Consensus 242 g~~v~ 246 (334)
T 2dbq_A 242 GKVVD 246 (334)
T ss_dssp GGGBC
T ss_pred CcccC
Confidence 86544
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.37 E-value=9e-07 Score=89.56 Aligned_cols=92 Identities=17% Similarity=0.277 Sum_probs=64.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|.||.++|..+... | .+|..|+|+++.. .
T Consensus 170 ~gktiGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~----------------------------~------- 208 (340)
T 4dgs_A 170 KGKRIGVLGLGQIGRALASRAEAF-G-----MSVRYWNRSTLSG----------------------------V------- 208 (340)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSCCTT----------------------------S-------
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCcccc----------------------------c-------
Confidence 348999999999999999999877 7 8999999886310 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
......++++++++||+|++++| ...++.++ ++..+.+++ ++++|.++.|
T Consensus 209 -------------------------~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~---gailIN~aRG 260 (340)
T 4dgs_A 209 -------------------------DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGP---EGIVVNVARG 260 (340)
T ss_dssp -------------------------CCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTT---TCEEEECSCC
T ss_pred -------------------------CceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCC---CCEEEECCCC
Confidence 12234678899999999999999 45666666 556666776 7899999888
Q ss_pred Ccc
Q 012547 200 VEA 202 (461)
Q Consensus 200 i~~ 202 (461)
=..
T Consensus 261 ~vv 263 (340)
T 4dgs_A 261 NVV 263 (340)
T ss_dssp ---
T ss_pred ccc
Confidence 443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.1e-06 Score=74.32 Aligned_cols=104 Identities=21% Similarity=0.206 Sum_probs=67.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.++|.|+|+|.||..++..|... | ++|++++++++.++.+.. .. +..... +
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~-g-----~~V~vid~~~~~~~~~~~--------~~---------g~~~~~------~ 69 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSS-G-----HSVVVVDKNEYAFHRLNS--------EF---------SGFTVV------G 69 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCGGGGGGSCT--------TC---------CSEEEE------S
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHh--------cC---------CCcEEE------e
Confidence 37999999999999999999998 8 899999999876553210 00 000000 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHH-hcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~a-v~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+ ..-...+.++ +.++|+||+++|+......+..+.+.+.+ ...++..+++..
T Consensus 70 d------------------------~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~---~~~iv~~~~~~~ 122 (155)
T 2g1u_A 70 D------------------------AAEFETLKECGMEKADMVFAFTNDDSTNFFISMNARYMFN---VENVIARVYDPE 122 (155)
T ss_dssp C------------------------TTSHHHHHTTTGGGCSEEEECSSCHHHHHHHHHHHHHTSC---CSEEEEECSSGG
T ss_pred c------------------------CCCHHHHHHcCcccCCEEEEEeCCcHHHHHHHHHHHHHCC---CCeEEEEECCHH
Confidence 0 0000112222 57899999999998776666666654443 456777776654
Q ss_pred c
Q 012547 202 A 202 (461)
Q Consensus 202 ~ 202 (461)
.
T Consensus 123 ~ 123 (155)
T 2g1u_A 123 K 123 (155)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-06 Score=91.16 Aligned_cols=111 Identities=12% Similarity=0.139 Sum_probs=76.1
Q ss_pred CceEEEECccHH-HHHHHHHHHHh-cCCCCCCeeEEEEecCc--hhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 43 PLRIVGVGAGAW-GSVFTAMLQDS-YGYLRDKVLIRIWRRPG--RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 43 ~mkI~IIGaGam-G~alA~~La~~-~G~~~~~~~V~l~~r~~--~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
+|||+|||+|+| |.+++..|+.+ .++ +.++|.||++++ ++++.++. + .. .+++..
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l--~~~ev~L~Di~~~~e~~~~~~~--~----~~------------~~~~~~- 65 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHEL--PVGELWLVDIPEGKEKLEIVGA--L----AK------------RMVEKA- 65 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTC--CEEEEEEECCGGGHHHHHHHHH--H----HH------------HHHHHT-
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCC--CCCEEEEEEcCCChHHHHHHHH--H----HH------------HHHhhc-
Confidence 589999999999 88888888872 121 017899999998 87765321 0 00 122211
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--------------------------
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-------------------------- 172 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~-------------------------- 172 (461)
.. ...+.+++|+.+++++||+||+++|+..
T Consensus 66 ------~~------------------~~~i~~t~D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~gg 121 (450)
T 1s6y_A 66 ------GV------------------PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGG 121 (450)
T ss_dssp ------TC------------------CCEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHH
T ss_pred ------CC------------------CcEEEEeCCHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccch
Confidence 00 0147778999889999999999999632
Q ss_pred ----------HHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 173 ----------TKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 173 ----------~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
+.++++++..+.. ++.++..+|-++.
T Consensus 122 i~~~~rni~i~~~i~~~i~~~~P----~a~ii~~tNPvdi 157 (450)
T 1s6y_A 122 LFKGLRTIPVILDIIRDMEELCP----DAWLINFTNPAGM 157 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT----TCEEEECSSSHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHCC----CeEEEEeCCcHHH
Confidence 4556666666654 5788888987754
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4e-07 Score=91.57 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=70.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..|+|+|||+|.||.++|..++.. | ++|.+|+|+.+..+.. ..
T Consensus 154 ~g~~vgIIG~G~iG~~iA~~l~~~-G-----~~V~~~d~~~~~~~~~--------------------------~~----- 196 (330)
T 2gcg_A 154 TQSTVGIIGLGRIGQAIARRLKPF-G-----VQRFLYTGRQPRPEEA--------------------------AE----- 196 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGG-T-----CCEEEEESSSCCHHHH--------------------------HT-----
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCcchhHH--------------------------Hh-----
Confidence 347999999999999999999988 8 8999999987543210 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.++... ++++++++||+|++++|.. .++.++ +++.+.+++ ++++|.++.|
T Consensus 197 ------------------------~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~---gailIn~srg 248 (330)
T 2gcg_A 197 ------------------------FQAEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKE---TAVFINISRG 248 (330)
T ss_dssp ------------------------TTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCT---TCEEEECSCG
T ss_pred ------------------------cCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCC---CcEEEECCCC
Confidence 023333 7888889999999999975 455555 455566776 6888888877
Q ss_pred Cc
Q 012547 200 VE 201 (461)
Q Consensus 200 i~ 201 (461)
-.
T Consensus 249 ~~ 250 (330)
T 2gcg_A 249 DV 250 (330)
T ss_dssp GG
T ss_pred cc
Confidence 43
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-06 Score=91.27 Aligned_cols=107 Identities=17% Similarity=0.224 Sum_probs=75.7
Q ss_pred CceEEEECccH--HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGA--WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGa--mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.|||+|||+|+ ||.+++..|+.. ..+ . .+|.+|+++++.++.++. +. .++...
T Consensus 5 ~~KIaVIGaGs~g~g~~la~~l~~~-~~~-~-geV~L~Di~~e~le~~~~------~~-------------~~l~~~--- 59 (450)
T 3fef_A 5 QIKIAYIGGGSQGWARSLMSDLSID-ERM-S-GTVALYDLDFEAAQKNEV------IG-------------NHSGNG--- 59 (450)
T ss_dssp CEEEEEETTTCSSHHHHHHHHHHHC-SSC-C-EEEEEECSSHHHHHHHHH------HH-------------TTSTTS---
T ss_pred CCEEEEECCChhHhHHHHHHHHHhc-ccc-C-CeEEEEeCCHHHHHHHHH------HH-------------HHHhcc---
Confidence 47999999999 689999999874 211 1 499999999987664321 00 011110
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-----------------------------
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------------------- 171 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~----------------------------- 171 (461)
...+.+|+|+++|+++||+||++++..
T Consensus 60 ------------------------~~~I~~TtD~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GG 115 (450)
T 3fef_A 60 ------------------------RWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGG 115 (450)
T ss_dssp ------------------------CEEEEEESSHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHH
T ss_pred ------------------------CCeEEEECCHHHHhcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCch
Confidence 015788999999999999999999742
Q ss_pred ---------hHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 172 ---------ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 172 ---------~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.+.++++++..+.. +..+|..+|-++.
T Consensus 116 i~~alr~~~i~~~i~~~i~~~~p----~a~~i~~tNPvdi 151 (450)
T 3fef_A 116 IIRGLRAVPIFAEIARAIRDYAP----ESWVINYTNPMSV 151 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT----TSEEEECCSSHHH
T ss_pred hhcccccHHHHHHHHHHHHHHCC----CeEEEEecCchHH
Confidence 15666666666643 5788888887654
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=2e-06 Score=86.07 Aligned_cols=41 Identities=10% Similarity=-0.034 Sum_probs=32.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|||+|||+|++|++++..|+.. |.+ .+|.++|+++++++
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~-~~~---~ev~L~Di~~~~~~ 46 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALR-QTA---NELVLIDVFKEKAI 46 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHT-TCS---SEEEEECCC---CC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCChHHHH
Confidence 458999999999999999999988 621 28999999987655
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-06 Score=74.55 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=34.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.|+|+|+|+|.+|..++..|.+. | ++|++++++++.++.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~-g-----~~v~~~d~~~~~~~~ 42 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEK-G-----HDIVLIDIDKDICKK 42 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHH
Confidence 37999999999999999999998 8 899999998876543
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.8e-07 Score=88.57 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=70.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|.||.++|..+... | .+|..|+|+.+..+
T Consensus 121 ~g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~----------------------------------- 159 (290)
T 3gvx_A 121 YGKALGILGYGGIGRRVAHLAKAF-G-----MRVIAYTRSSVDQN----------------------------------- 159 (290)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSSCCCTT-----------------------------------
T ss_pred ecchheeeccCchhHHHHHHHHhh-C-----cEEEEEeccccccc-----------------------------------
Confidence 347999999999999999999988 8 89999998864211
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.....+++++++++||+|++++|. ..++.++ ++..+.+++ ++++|.++.|
T Consensus 160 -------------------------~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~aRG 211 (290)
T 3gvx_A 160 -------------------------VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARK---NLTIVNVARA 211 (290)
T ss_dssp -------------------------CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCT---TCEEEECSCG
T ss_pred -------------------------cccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhc---CceEEEeehh
Confidence 123346788889999999999994 4555544 445556676 7899988877
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
-..+
T Consensus 212 ~~vd 215 (290)
T 3gvx_A 212 DVVS 215 (290)
T ss_dssp GGBC
T ss_pred cccC
Confidence 5444
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=3.9e-06 Score=84.42 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=34.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.+|||+|||+|.||+++|..|+.. |.+ .+|.++++++++++
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~-~~~---~~l~l~D~~~~k~~ 44 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQ-GIT---DELVVIDVNKEKAM 44 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCC---ceEEEEecchHHHH
Confidence 468999999999999999999998 732 38999999887655
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.26 E-value=8.3e-07 Score=86.83 Aligned_cols=120 Identities=21% Similarity=0.231 Sum_probs=77.2
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhH
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHL 93 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l 93 (461)
.+|-+..+|-...--+.-|++. |. +...++|+|||+|.||.+++..|.+. | .+|++|+|+.++++.+.+
T Consensus 102 ~~g~~~g~nTd~~G~~~~l~~~-~~-~~~~~~v~iiGaG~~g~aia~~L~~~-g-----~~V~v~~r~~~~~~~l~~--- 170 (275)
T 2hk9_A 102 ENGKAYGYNTDWIGFLKSLKSL-IP-EVKEKSILVLGAGGASRAVIYALVKE-G-----AKVFLWNRTKEKAIKLAQ--- 170 (275)
T ss_dssp ETTEEEEECCHHHHHHHHHHHH-CT-TGGGSEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSSHHHHHHHTT---
T ss_pred eCCEEEeecCCHHHHHHHHHHh-CC-CcCCCEEEEECchHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHHHHH---
Confidence 4565555554444444444432 22 23447999999999999999999998 8 799999999865543110
Q ss_pred HHHHhhhhhhHHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhH
Q 012547 94 FEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET 173 (461)
Q Consensus 94 ~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~ 173 (461)
.+ ++.+.++++++++++|+||.|||....
T Consensus 171 -------------------~~--------------------------------g~~~~~~~~~~~~~aDiVi~atp~~~~ 199 (275)
T 2hk9_A 171 -------------------KF--------------------------------PLEVVNSPEEVIDKVQVIVNTTSVGLK 199 (275)
T ss_dssp -------------------TS--------------------------------CEEECSCGGGTGGGCSEEEECSSTTSS
T ss_pred -------------------Hc--------------------------------CCeeehhHHhhhcCCCEEEEeCCCCCC
Confidence 00 233444677778899999999998754
Q ss_pred HHHHHHH-HHHhhccCCCCEEEEEee
Q 012547 174 KEVFEEI-SRYWKERITVPVIISLAK 198 (461)
Q Consensus 174 ~~vl~~i-~~~l~~~~~~~iIIs~tk 198 (461)
.++...+ .+.+++ +++++.+..
T Consensus 200 ~~~~~~i~~~~l~~---g~~viDv~~ 222 (275)
T 2hk9_A 200 DEDPEIFNYDLIKK---DHVVVDIIY 222 (275)
T ss_dssp TTCCCSSCGGGCCT---TSEEEESSS
T ss_pred CCCCCCCCHHHcCC---CCEEEEcCC
Confidence 3211112 234555 677877764
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.7e-06 Score=81.67 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=78.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+|||+|||+|.||+++|..|+.. | . +|.++++++++++.... -++.. .+..
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~-~-----~~~v~l~Di~~~~~~g~a~-----dL~~~-------------~~~~---- 56 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIK-Q-----LGDVVLFDIAQGMPNGKAL-----DLLQT-------------CPIE---- 56 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSSSHHHHHHH-----HHHTT-------------HHHH----
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CceEEEEeCChHHHHHHHH-----HHHhh-------------hhhc----
Confidence 47999999999999999999988 7 5 89999999876542110 01110 0000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHhh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWK 185 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l~ 185 (461)
+. ...+..++|. +++++||+||++... ..++++.+.+..+.
T Consensus 57 ~~---------------------~~~v~~t~d~-~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~- 113 (321)
T 3p7m_A 57 GV---------------------DFKVRGTNDY-KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC- 113 (321)
T ss_dssp TC---------------------CCCEEEESCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CC---------------------CcEEEEcCCH-HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-
Confidence 00 0145666775 579999999999732 13555566666665
Q ss_pred ccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 186 ERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+ +.+++.++|-+..- ..++++..+.|..++
T Consensus 114 p---~a~vivvtNPvd~~----------t~~~~k~sg~p~~rv 143 (321)
T 3p7m_A 114 P---NAFVICITNPLDIM----------VNMLQKFSGVPDNKI 143 (321)
T ss_dssp T---TCEEEECCSSHHHH----------HHHHHHHHCCCGGGE
T ss_pred C---CcEEEEecCchHHH----------HHHHHHhcCCCHHHE
Confidence 3 56777777765432 355666656554454
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.24 E-value=9.8e-07 Score=88.94 Aligned_cols=97 Identities=21% Similarity=0.316 Sum_probs=72.3
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+-..++|+|||+|.||.++|..++.. | ++|.+|+|+.+. +.. . ..
T Consensus 143 ~l~g~~vgIIG~G~iG~~vA~~l~~~-G-----~~V~~~d~~~~~-~~~---------~-----------------~~-- 187 (333)
T 2d0i_A 143 SLYGKKVGILGMGAIGKAIARRLIPF-G-----VKLYYWSRHRKV-NVE---------K-----------------EL-- 187 (333)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHGGG-T-----CEEEEECSSCCH-HHH---------H-----------------HH--
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCcch-hhh---------h-----------------hc--
Confidence 34457999999999999999999887 8 899999998753 210 0 00
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHH-HHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~-~i~~~l~~~~~~~iIIs~t 197 (461)
++.. .++++++++||+|++++|.. .++.++. ++.+.+++ + ++|.++
T Consensus 188 ---------------------------g~~~-~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~---g-ilin~s 235 (333)
T 2d0i_A 188 ---------------------------KARY-MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEG---K-YLVNIG 235 (333)
T ss_dssp ---------------------------TEEE-CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBT---C-EEEECS
T ss_pred ---------------------------Ccee-cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCC---C-EEEECC
Confidence 1233 36778889999999999987 6666664 45566776 7 889888
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
+|-..+
T Consensus 236 rg~~vd 241 (333)
T 2d0i_A 236 RGALVD 241 (333)
T ss_dssp CGGGBC
T ss_pred CCcccC
Confidence 886554
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.23 E-value=9.3e-06 Score=81.24 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=68.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecC--chhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRP--GRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~--~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
.+||+|||+|.||+++|..++.. | + +|.+|+++ ++.++... . ++ ... .+..
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~-g-----~~~v~l~D~~~~~~~~~g~a-~---dl-~~~-------------~~~~-- 61 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQK-E-----LADVVLVDIPQLENPTKGKA-L---DM-LEA-------------SPVQ-- 61 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCGGGHHHHHHHH-H---HH-HHH-------------HHHH--
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEeccchHHHHHHhh-h---hH-HHh-------------hhhc--
Confidence 47999999999999999999998 7 7 99999998 44333211 0 01 000 0000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHH
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRY 183 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~ 183 (461)
+. ...+..++|. +++++||+||++... ..++++.+.+..+
T Consensus 62 --~~---------------------~~~i~~t~d~-~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~ 117 (315)
T 3tl2_A 62 --GF---------------------DANIIGTSDY-ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH 117 (315)
T ss_dssp --TC---------------------CCCEEEESCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cC---------------------CCEEEEcCCH-HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0246667775 568999999999732 1345555666665
Q ss_pred hhccCCCCEEEEEeecCc
Q 012547 184 WKERITVPVIISLAKGVE 201 (461)
Q Consensus 184 l~~~~~~~iIIs~tkGi~ 201 (461)
.+ +..++.++|-..
T Consensus 118 ~p----~a~vlvvsNPvd 131 (315)
T 3tl2_A 118 SP----NAIIVVLTNPVD 131 (315)
T ss_dssp CT----TCEEEECCSSHH
T ss_pred CC----CeEEEECCChHH
Confidence 43 577888887654
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.1e-06 Score=81.33 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=70.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
||+|||+|.+|+++|..++.. | . +|.++|+++++++... . + +... .... +.
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~-~-----l~el~L~Di~~~~~~g~~-~---d-l~~~-------------~~~~----~~ 52 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR-G-----YDDLLLIARTPGKPQGEA-L---D-LAHA-------------AAEL----GV 52 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH-T-----CSCEEEECSSTTHHHHHH-H---H-HHHH-------------HHHH----TC
T ss_pred CEEEECcCHHHHHHHHHHHhC-C-----CCEEEEEcCChhhHHHHH-H---H-HHHh-------------hhhc----CC
Confidence 799999999999999999988 7 4 7999999987664311 0 1 1110 0000 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh----------------HHHHHHHHHHHhhcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------------TKEVFEEISRYWKER 187 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~----------------~~~vl~~i~~~l~~~ 187 (461)
...+..++|. +++++||+||++.+... ++++++++.++. +
T Consensus 53 ---------------------~~~i~~t~d~-~a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p- 108 (308)
T 2d4a_B 53 ---------------------DIRISGSNSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-K- 108 (308)
T ss_dssp ---------------------CCCEEEESCG-GGGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-T-
T ss_pred ---------------------CeEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-C-
Confidence 0146777787 67999999999975432 777777777775 3
Q ss_pred CCCCEEEEEeecCc
Q 012547 188 ITVPVIISLAKGVE 201 (461)
Q Consensus 188 ~~~~iIIs~tkGi~ 201 (461)
+..+|.++|-+.
T Consensus 109 --~a~iiv~tNPv~ 120 (308)
T 2d4a_B 109 --DAIVVITTNPVD 120 (308)
T ss_dssp --TCEEEECCSSHH
T ss_pred --CeEEEEeCCchH
Confidence 567777887554
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=1e-05 Score=80.99 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=34.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+.|||+|||+|++|++++..|+.. +.+ .++.++|+++++++
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~~-~~~---~el~L~Di~~~~~~ 44 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQQ-GIA---EEFVIVDVVKDRTK 44 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHcC-CCC---CEEEEEeCCchHHH
Confidence 348999999999999999999988 632 38999999877655
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=8.6e-06 Score=81.84 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=70.7
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
++.++|||+|||+|++|++++..|+.. +.+ .++.++|+++++++... .+ +... .+..
T Consensus 5 ~~~~~~KI~IiGaG~vG~~la~~l~~~-~~~---~el~L~Di~~~~~~g~~----~d-l~~~-------------~~~~- 61 (326)
T 2zqz_A 5 TDKDHQKVILVGDGAVGSSYAYAMVLQ-GIA---QEIGIVDIFKDKTKGDA----ID-LSNA-------------LPFT- 61 (326)
T ss_dssp -CCCCCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSCHHHHHHHH----HH-HHTT-------------GGGS-
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHcC-CCC---CEEEEEeCCchHhHHHH----HH-HHHH-------------HHhc-
Confidence 455668999999999999999999988 632 38999999876654311 00 1110 0100
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch----------------hHHHHHHHHHH
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISR 182 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~----------------~~~~vl~~i~~ 182 (461)
.+++++.+..+++++||+||++.+.. .++++.+.+..
T Consensus 62 ---------------------------~~~~i~~~~~~a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~ 114 (326)
T 2zqz_A 62 ---------------------------SPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVD 114 (326)
T ss_dssp ---------------------------CCCEEEECCGGGGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CCeEEEECCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 13344445567799999999998542 24455555555
Q ss_pred HhhccCCCCEEEEEeecCcc
Q 012547 183 YWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 183 ~l~~~~~~~iIIs~tkGi~~ 202 (461)
+. + +..++.++|-+..
T Consensus 115 ~~-p---~a~iiv~tNPv~~ 130 (326)
T 2zqz_A 115 SG-F---NGIFLVAANPVDI 130 (326)
T ss_dssp HT-C---CSEEEECSSSHHH
T ss_pred HC-C---CeEEEEeCCcHHH
Confidence 54 3 5677777776543
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-06 Score=88.01 Aligned_cols=95 Identities=19% Similarity=0.173 Sum_probs=69.5
Q ss_pred CCCceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
...++|+|||.|.||.++|..+. .. | .+|..|+|+.+..+.. ...
T Consensus 161 l~g~~vgIIG~G~IG~~vA~~l~~~~-G-----~~V~~~d~~~~~~~~~--------------------------~~~-- 206 (348)
T 2w2k_A 161 PRGHVLGAVGLGAIQKEIARKAVHGL-G-----MKLVYYDVAPADAETE--------------------------KAL-- 206 (348)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT-C-----CEEEEECSSCCCHHHH--------------------------HHH--
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHhc-C-----CEEEEECCCCcchhhH--------------------------hhc--
Confidence 34479999999999999999998 77 7 8999999987543310 000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~t 197 (461)
++...+++++++++||+|++++|.. .++.++ +++.+.+++ ++++|.++
T Consensus 207 ---------------------------g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~---gailin~s 256 (348)
T 2w2k_A 207 ---------------------------GAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP---GSRIVNTA 256 (348)
T ss_dssp ---------------------------TCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCT---TEEEEECS
T ss_pred ---------------------------CcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCC---CCEEEECC
Confidence 1233457888889999999999975 455555 345556676 67888877
Q ss_pred ec
Q 012547 198 KG 199 (461)
Q Consensus 198 kG 199 (461)
.|
T Consensus 257 rg 258 (348)
T 2w2k_A 257 RG 258 (348)
T ss_dssp CG
T ss_pred CC
Confidence 76
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=7.3e-06 Score=81.93 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=34.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|||+|||+|++|++++..|+.. |.+ .+|.++++++++++
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~-~~~---~ei~L~Di~~~~~~ 45 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQ-SIV---DELVIIDLDTEKVR 45 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH-CSC---SEEEEECSCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCChhHhh
Confidence 458999999999999999999988 632 48999999876554
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.17 E-value=1e-05 Score=80.93 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=34.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|||+|||+|.||+++|..|+.. |+. .+|.++++++++++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~-~~~---~el~l~D~~~~k~~ 39 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQ-DVA---KEVVMVDIKDGMPQ 39 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCS---SEEEEECSSTTHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCchHHHH
Confidence 7999999999999999999988 731 38999999987654
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=9e-06 Score=81.89 Aligned_cols=108 Identities=8% Similarity=-0.033 Sum_probs=73.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..+||+|||+|.||+++|..++.. |++ .+|.+++++++.++.... + ++.. ..+..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~-g~~---~ev~L~Di~~~~~~g~a~----D-L~~~----------~~~~~------ 74 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMK-DLA---DEVALVDVMEDKLKGEMM----D-LEHG----------SLFLH------ 74 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHH-CCC---SEEEEECSCHHHHHHHHH----H-HHHH----------GGGSC------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCC---CeEEEEECCHHHHHHHHH----H-hhhh----------hhccc------
Confidence 458999999999999999999998 732 389999998876553110 0 1110 00100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHhh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWK 185 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l~ 185 (461)
...+..++|+++ +++||+||++... ..++++.+++.++ .
T Consensus 75 -----------------------~~~i~~t~d~~~-~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~ 129 (330)
T 3ldh_A 75 -----------------------TAKIVSGKDYSV-SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-S 129 (330)
T ss_dssp -----------------------CSEEEEESSSCS-CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-C
T ss_pred -----------------------CCeEEEcCCHHH-hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-C
Confidence 024667788875 8999999998632 2366677777777 3
Q ss_pred ccCCCCEEEEEeecCcc
Q 012547 186 ERITVPVIISLAKGVEA 202 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~~ 202 (461)
+ +..++.++|-...
T Consensus 130 P---~a~ilvvtNPvdi 143 (330)
T 3ldh_A 130 P---DCLKELHPELGTD 143 (330)
T ss_dssp T---TCEEEECSSSHHH
T ss_pred C---CceEEeCCCccHH
Confidence 3 5778888876543
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-05 Score=80.96 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=77.7
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
.....|||+|||+|.+|+++|..|+.. |++ .++.++++++++++.... -++.. .+.
T Consensus 5 ~~~~~~kV~ViGaG~vG~~~a~~l~~~-~~~---~el~l~D~~~~k~~g~a~-----DL~~~-------------~~~-- 60 (326)
T 3vku_A 5 TDKDHQKVILVGDGAVGSSYAYAMVLQ-GIA---QEIGIVDIFKDKTKGDAI-----DLEDA-------------LPF-- 60 (326)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSCHHHHHHHHH-----HHHTT-------------GGG--
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHhC-CCC---CeEEEEeCChHHHHHHHh-----hHhhh-------------hhh--
Confidence 344568999999999999999999988 732 389999998876553110 01110 000
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch----------------hHHHHHHHHHH
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISR 182 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~----------------~~~~vl~~i~~ 182 (461)
+ .++.++++..+++++||+||++.... .++++.+.+..
T Consensus 61 -------~-------------------~~~~i~~~~~~a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~ 114 (326)
T 3vku_A 61 -------T-------------------SPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVD 114 (326)
T ss_dssp -------S-------------------CCCEEEECCGGGGTTCSEEEECCCCC----------------CHHHHHHHHHT
T ss_pred -------c-------------------CCcEEEECcHHHhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 0 13344445456799999999987321 24555566665
Q ss_pred HhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 183 ~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
+.. +..++.++|-+.. +..++++..+.|..+
T Consensus 115 ~~p----~a~ilvvtNPvdi----------~t~~~~k~~g~p~~r 145 (326)
T 3vku_A 115 SGF----NGIFLVAANPVDI----------LTYATWKLSGFPKNR 145 (326)
T ss_dssp TTC----CSEEEECSSSHHH----------HHHHHHHHHCCCGGG
T ss_pred cCC----ceEEEEccCchHH----------HHHHHHHhcCCCHHH
Confidence 543 5778878876543 235556655554444
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.7e-06 Score=77.46 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=68.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||.|+|+|.+|..+|..|.+. | ++|++++++++.++.+.. ..+ ..... ++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~-g-----~~v~vid~~~~~~~~l~~--------~~~---------~~~i~------gd 51 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR-K-----YGVVIINKDRELCEEFAK--------KLK---------ATIIH------GD 51 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT-T-----CCEEEEESCHHHHHHHHH--------HSS---------SEEEE------SC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHH--------HcC---------CeEEE------cC
Confidence 7999999999999999999998 8 999999999887654211 000 00000 01
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHH-hcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~a-v~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
..-...++++ +.+||+||++++++.....+..+...+.+ ...+|+.++.-..
T Consensus 52 ------------------------~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~---~~~iia~~~~~~~ 104 (218)
T 3l4b_C 52 ------------------------GSHKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFG---VKRVVSLVNDPGN 104 (218)
T ss_dssp ------------------------TTSHHHHHHHTCCTTCEEEECCSCHHHHHHHHHHHHHTSC---CCEEEECCCSGGG
T ss_pred ------------------------CCCHHHHHhcCcccCCEEEEecCCcHHHHHHHHHHHHHcC---CCeEEEEEeCcch
Confidence 0001123333 68899999999999887777776665443 4566766655443
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2e-06 Score=86.17 Aligned_cols=95 Identities=23% Similarity=0.375 Sum_probs=69.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.||.++|..+... | .+|..|+|+++..+. ..
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~------- 179 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQAW-G-----FPLRCWSRSRKSWPG--------------------------VE------- 179 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTT-T-----CCEEEEESSCCCCTT--------------------------CE-------
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEEcCCchhhhh--------------------------hh-------
Confidence 47999999999999999999877 7 899999998753211 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
......++++++++||+|++++| ...++.++ ++....+++ ++++|.++.|=
T Consensus 180 ------------------------~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRG~ 232 (315)
T 3pp8_A 180 ------------------------SYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPD---GAYVLNLARGV 232 (315)
T ss_dssp ------------------------EEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCT---TEEEEECSCGG
T ss_pred ------------------------hhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCC---CCEEEECCCCh
Confidence 01112567888999999999999 44666655 445555676 68899888875
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 233 ~vd 235 (315)
T 3pp8_A 233 HVQ 235 (315)
T ss_dssp GBC
T ss_pred hhh
Confidence 444
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=3e-06 Score=84.45 Aligned_cols=93 Identities=19% Similarity=0.308 Sum_probs=64.6
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.+.++|+|||+|.||.+++..|++..| ..+|.+|+|++++++.+.+ . +.
T Consensus 133 ~~~~~igiIG~G~~g~~~a~~l~~~~g----~~~V~v~dr~~~~~~~l~~--------~--------------~~----- 181 (312)
T 2i99_A 133 PSSEVLCILGAGVQAYSHYEIFTEQFS----FKEVRIWNRTKENAEKFAD--------T--------------VQ----- 181 (312)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHCC----CSEEEEECSSHHHHHHHHH--------H--------------SS-----
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHhCC----CcEEEEEcCCHHHHHHHHH--------H--------------hh-----
Confidence 356899999999999999999986523 1489999999876553110 0 00
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEE
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~ 196 (461)
..+...++++++++++|+||+|||+. +.++.. +++++ +++|+++
T Consensus 182 -------------------------~~~~~~~~~~e~v~~aDiVi~atp~~--~~v~~~--~~l~~---g~~vi~~ 225 (312)
T 2i99_A 182 -------------------------GEVRVCSSVQEAVAGADVIITVTLAT--EPILFG--EWVKP---GAHINAV 225 (312)
T ss_dssp -------------------------SCCEECSSHHHHHTTCSEEEECCCCS--SCCBCG--GGSCT---TCEEEEC
T ss_pred -------------------------CCeEEeCCHHHHHhcCCEEEEEeCCC--CcccCH--HHcCC---CcEEEeC
Confidence 01445678889999999999999963 333322 45555 6766665
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.3e-05 Score=69.95 Aligned_cols=43 Identities=23% Similarity=0.190 Sum_probs=37.4
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
++....+|.|+|+|.+|..+|..|.+. | ++|++++++++.++.
T Consensus 3 ~~~~~~~viIiG~G~~G~~la~~L~~~-g-----~~v~vid~~~~~~~~ 45 (140)
T 3fwz_A 3 AVDICNHALLVGYGRVGSLLGEKLLAS-D-----IPLVVIETSRTRVDE 45 (140)
T ss_dssp CCCCCSCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCHHHHHH
T ss_pred cccCCCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 344557899999999999999999998 8 999999999987664
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.07 E-value=9.2e-06 Score=70.48 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=35.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+++|.|+|+|.+|..+|..|.+. | ++|.+++++++.++.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~-g-----~~V~~id~~~~~~~~ 44 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAA-G-----KKVLAVDKSKEKIEL 44 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHH
Confidence 46899999999999999999998 8 999999999876654
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.07 E-value=5.5e-06 Score=84.16 Aligned_cols=99 Identities=24% Similarity=0.288 Sum_probs=71.0
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
-.-++|+|||.|.||.++|..+... | .+|..|+|++...+. ....
T Consensus 162 l~gktvGIIG~G~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~~~--- 206 (351)
T 3jtm_A 162 LEGKTIGTVGAGRIGKLLLQRLKPF-G-----CNLLYHDRLQMAPEL--------------------------EKET--- 206 (351)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGG-C-----CEEEEECSSCCCHHH--------------------------HHHH---
T ss_pred ccCCEEeEEEeCHHHHHHHHHHHHC-C-----CEEEEeCCCccCHHH--------------------------HHhC---
Confidence 3447999999999999999999877 8 899999988643221 0000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tk 198 (461)
++....++++++++||+|++++|. ..++.++ ++....+++ ++++|.++.
T Consensus 207 --------------------------g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aR 257 (351)
T 3jtm_A 207 --------------------------GAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK---GVLIVNNAR 257 (351)
T ss_dssp --------------------------CCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCT---TEEEEECSC
T ss_pred --------------------------CCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCC---CCEEEECcC
Confidence 234446788999999999999995 3444444 344455666 788998887
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
|=..+
T Consensus 258 G~~vd 262 (351)
T 3jtm_A 258 GAIME 262 (351)
T ss_dssp GGGBC
T ss_pred chhhC
Confidence 75443
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-05 Score=67.04 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=34.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.+|+|+|+|+|.+|.+++..|.+. | .++|.+++|+++.++
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~-g----~~~v~~~~r~~~~~~ 43 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTS-S----NYSVTVADHDLAALA 43 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHC-S----SEEEEEEESCHHHHH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhC-C----CceEEEEeCCHHHHH
Confidence 347999999999999999999988 6 278999999987654
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.2e-06 Score=74.12 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=62.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.||.+++..|+.. | ++|++|+|++++++.+.++ +. .
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~-g-----~~v~v~~r~~~~~~~~a~~----------------------~~-~----- 66 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYP-Q-----YKVTVAGRNIDHVRAFAEK----------------------YE-Y----- 66 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTT-T-----CEEEEEESCHHHHHHHHHH----------------------HT-C-----
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCHHHHHHHHHH----------------------hC-C-----
Confidence 46999999999999999999887 7 6799999998765532110 00 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.+...+++.+++.++|+||.|+|+... ++. ...+++ +.+++.+..
T Consensus 67 ------------------------~~~~~~~~~~~~~~~Divi~at~~~~~--~~~--~~~l~~---g~~vid~~~ 111 (144)
T 3oj0_A 67 ------------------------EYVLINDIDSLIKNNDVIITATSSKTP--IVE--ERSLMP---GKLFIDLGN 111 (144)
T ss_dssp ------------------------EEEECSCHHHHHHTCSEEEECSCCSSC--SBC--GGGCCT---TCEEEECCS
T ss_pred ------------------------ceEeecCHHHHhcCCCEEEEeCCCCCc--Eee--HHHcCC---CCEEEEccC
Confidence 123456788888999999999997621 111 133454 566666543
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-05 Score=79.66 Aligned_cols=99 Identities=18% Similarity=0.105 Sum_probs=68.7
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHh-cCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccc
Q 012547 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK 115 (461)
Q Consensus 38 ~~~~~~mkI~IIGaGamG~alA~~La~~-~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~ 115 (461)
|...+++||+|||+|.||..++..+.+. .+ .++. +++++++.++.+.+ .
T Consensus 8 m~~~~~~rvgiiG~G~~g~~~~~~l~~~~~~-----~~lvav~d~~~~~~~~~~~--------~---------------- 58 (354)
T 3q2i_A 8 PITDRKIRFALVGCGRIANNHFGALEKHADR-----AELIDVCDIDPAALKAAVE--------R---------------- 58 (354)
T ss_dssp CCCSSCEEEEEECCSTTHHHHHHHHHHTTTT-----EEEEEEECSSHHHHHHHHH--------H----------------
T ss_pred cCCCCcceEEEEcCcHHHHHHHHHHHhCCCC-----eEEEEEEcCCHHHHHHHHH--------H----------------
Confidence 3444678999999999999999988865 13 6644 88998876543110 0
Q ss_pred hhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEE
Q 012547 116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 116 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iI 193 (461)
+ ++...+|+++.+. +.|+|++|+|+....+++.... .. +..|
T Consensus 59 ----------~--------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~~---gk~v 102 (354)
T 3q2i_A 59 ----------T--------------------GARGHASLTDMLAQTDADIVILTTPSGLHPTQSIECS---EA---GFHV 102 (354)
T ss_dssp ----------H--------------------CCEEESCHHHHHHHCCCSEEEECSCGGGHHHHHHHHH---HT---TCEE
T ss_pred ----------c--------------------CCceeCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHH---HC---CCCE
Confidence 0 2456688888876 7999999999998877776654 33 3333
Q ss_pred EEEeecCcc
Q 012547 194 ISLAKGVEA 202 (461)
Q Consensus 194 Is~tkGi~~ 202 (461)
.+-|-+..
T Consensus 103 -~~EKP~a~ 110 (354)
T 3q2i_A 103 -MTEKPMAT 110 (354)
T ss_dssp -EECSSSCS
T ss_pred -EEeCCCcC
Confidence 46666544
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.03 E-value=8.1e-06 Score=82.80 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=58.8
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
.++++|||.|+|||.+|..+|..|++. ++|++++++.+.++.++ . ....+
T Consensus 12 ~~g~~mkilvlGaG~vG~~~~~~L~~~-------~~v~~~~~~~~~~~~~~---------~-------------~~~~~- 61 (365)
T 3abi_A 12 IEGRHMKVLILGAGNIGRAIAWDLKDE-------FDVYIGDVNNENLEKVK---------E-------------FATPL- 61 (365)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHTTT-------SEEEEEESCHHHHHHHT---------T-------------TSEEE-
T ss_pred ccCCccEEEEECCCHHHHHHHHHHhcC-------CCeEEEEcCHHHHHHHh---------c-------------cCCcE-
Confidence 456789999999999999999999866 79999999987655321 0 11110
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHH
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~ 181 (461)
.+ .+.-..++.++++++|+||.|+|+.+...+++...
T Consensus 62 ------~~--------------------d~~d~~~l~~~~~~~DvVi~~~p~~~~~~v~~~~~ 98 (365)
T 3abi_A 62 ------KV--------------------DASNFDKLVEVMKEFELVIGALPGFLGFKSIKAAI 98 (365)
T ss_dssp ------EC--------------------CTTCHHHHHHHHTTCSEEEECCCGGGHHHHHHHHH
T ss_pred ------EE--------------------ecCCHHHHHHHHhCCCEEEEecCCcccchHHHHHH
Confidence 00 11112345667899999999999987777665543
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=3.6e-06 Score=89.97 Aligned_cols=97 Identities=21% Similarity=0.234 Sum_probs=72.8
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
-..++|+|||.|.||.++|..|... | .+|..|+++... +.. .. +
T Consensus 140 l~g~~vgIIG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~-~~a---------~~--------------~------ 183 (529)
T 1ygy_A 140 IFGKTVGVVGLGRIGQLVAQRIAAF-G-----AYVVAYDPYVSP-ARA---------AQ--------------L------ 183 (529)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCH-HHH---------HH--------------H------
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hHH---------Hh--------------c------
Confidence 3448999999999999999999987 7 899999987631 110 00 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHHH-HHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE-ISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~~-i~~~l~~~~~~~iIIs~tk 198 (461)
++... ++++++++||+|++++|.. .++.++.+ +.+.+++ ++++|.+++
T Consensus 184 --------------------------g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~---g~ilin~ar 233 (529)
T 1ygy_A 184 --------------------------GIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKP---GVIIVNAAR 233 (529)
T ss_dssp --------------------------TCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEECSC
T ss_pred --------------------------CcEEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCC---CCEEEECCC
Confidence 12222 6888899999999999987 77777755 6666776 788999998
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
|-..+
T Consensus 234 g~iv~ 238 (529)
T 1ygy_A 234 GGLVD 238 (529)
T ss_dssp TTSBC
T ss_pred Cchhh
Confidence 85544
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-05 Score=79.75 Aligned_cols=125 Identities=11% Similarity=0.105 Sum_probs=79.3
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
..+.+||+|||+|.||+++|..|+.. |+. .+|.++|+++++++.... + ++.. ..+ +
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~-~~~---~el~L~Di~~~~~~g~a~----D-L~~~----------~~~-~---- 71 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMK-DLA---DELALVDVIEDKLKGEMM----D-LQHG----------SLF-L---- 71 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSCHHHHHHHHH----H-HHHT----------GGG-C----
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhC-CCC---ceEEEEeCChHHHHHHHH----h-hhhh----------hhc-c----
Confidence 34568999999999999999999988 721 389999998776553111 0 1110 001 0
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC--c--------------hhHHHHHHHHHHH
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--S--------------TETKEVFEEISRY 183 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp--s--------------~~~~~vl~~i~~~ 183 (461)
. ...+..++|++ ++++||+||++.- . ..++++.+.+..+
T Consensus 72 ---~---------------------~~~i~~~~d~~-~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~ 126 (331)
T 4aj2_A 72 ---K---------------------TPKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY 126 (331)
T ss_dssp ---S---------------------CCEEEECSSGG-GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred ---C---------------------CCeEEEcCCHH-HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01345567876 5899999999862 2 1356666677766
Q ss_pred hhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 184 WKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 184 l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
. + +..++.++|-+..- ..++.+..+.|..+
T Consensus 127 ~-p---~a~vlvvtNPvdi~----------t~~~~k~sg~p~~r 156 (331)
T 4aj2_A 127 S-P---QCKLLIVSNPVDIL----------TYVAWKISGFPKNR 156 (331)
T ss_dssp C-T---TCEEEECSSSHHHH----------HHHHHHHHCCCGGG
T ss_pred C-C---CeEEEEecChHHHH----------HHHHHHHhCCCHHH
Confidence 3 3 57888888765432 35556655554444
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.99 E-value=2.6e-05 Score=77.68 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=33.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|||+|||+|++|++++..|+.. +.+ .++.++|+++++++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~-~~~---~el~L~Di~~~k~~ 39 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALL-GVA---REVVLVDLDRKLAQ 39 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSSHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCChhHHH
Confidence 7999999999999999999987 532 58999999976655
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.9e-06 Score=83.01 Aligned_cols=95 Identities=21% Similarity=0.363 Sum_probs=68.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.||.++|..+... | .+|..|+|+.+..+. +.
T Consensus 137 gktvGIiGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~------- 177 (324)
T 3evt_A 137 GQQLLIYGTGQIGQSLAAKASAL-G-----MHVIGVNTTGHPADH--------------------------FH------- 177 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSCCCCTT--------------------------CS-------
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-C-----CEEEEECCCcchhHh--------------------------Hh-------
Confidence 47999999999999999999877 8 899999998643211 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
......++++++++||+|++++|. ..++.++ ++....+++ ++++|.++.|=
T Consensus 178 ------------------------~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~---gailIN~aRG~ 230 (324)
T 3evt_A 178 ------------------------ETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQ---QPMLINIGRGP 230 (324)
T ss_dssp ------------------------EEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCS---CCEEEECSCGG
T ss_pred ------------------------hccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCC---CCEEEEcCCCh
Confidence 112235677888999999999994 4555544 344455666 78999888775
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 231 ~vd 233 (324)
T 3evt_A 231 AVD 233 (324)
T ss_dssp GBC
T ss_pred hhh
Confidence 443
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=6.9e-06 Score=82.26 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=67.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec-CchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR-PGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r-~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
..++|+|||.|.||.++|..+... | .+|..|+| +.+.... ...
T Consensus 145 ~g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~~~~---------------------------~~~--- 188 (320)
T 1gdh_A 145 DNKTLGIYGFGSIGQALAKRAQGF-D-----MDIDYFDTHRASSSDE---------------------------ASY--- 188 (320)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSCCCHHHH---------------------------HHH---
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCcChhhh---------------------------hhc---
Confidence 347999999999999999999877 7 89999999 7643110 000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tk 198 (461)
++...+++++++++||+|++++|.. .++.++ +...+.+++ ++++|.++.
T Consensus 189 --------------------------g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~---gailIn~ar 239 (320)
T 1gdh_A 189 --------------------------QATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQ---GAIVVNTAR 239 (320)
T ss_dssp --------------------------TCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCT---TEEEEECSC
T ss_pred --------------------------CcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCC---CcEEEECCC
Confidence 1233447888889999999999964 455555 334456666 688888887
Q ss_pred c
Q 012547 199 G 199 (461)
Q Consensus 199 G 199 (461)
|
T Consensus 240 g 240 (320)
T 1gdh_A 240 G 240 (320)
T ss_dssp G
T ss_pred C
Confidence 6
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=9e-06 Score=82.42 Aligned_cols=98 Identities=13% Similarity=0.108 Sum_probs=70.1
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+-..++|+|||.|.||.++|..+... | .+|..|+++.+.... . ..
T Consensus 165 ~l~g~tvGIIG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~~-----------~-------------~~----- 209 (347)
T 1mx3_A 165 RIRGETLGIIGLGRVGQAVALRAKAF-G-----FNVLFYDPYLSDGVE-----------R-------------AL----- 209 (347)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCTTHH-----------H-------------HH-----
T ss_pred CCCCCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEECCCcchhhH-----------h-------------hc-----
Confidence 44558999999999999999999877 7 899999987642100 0 00
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~t 197 (461)
++....+++++++.||+|++++|.. .++.++ ++..+.+++ ++++|.++
T Consensus 210 ---------------------------g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~a 259 (347)
T 1mx3_A 210 ---------------------------GLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQ---GAFLVNTA 259 (347)
T ss_dssp ---------------------------TCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCT---TEEEEECS
T ss_pred ---------------------------CCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCC---CCEEEECC
Confidence 1233457888889999999999964 555555 444455666 68888888
Q ss_pred ecCcc
Q 012547 198 KGVEA 202 (461)
Q Consensus 198 kGi~~ 202 (461)
.|=..
T Consensus 260 rg~~v 264 (347)
T 1mx3_A 260 RGGLV 264 (347)
T ss_dssp CTTSB
T ss_pred CChHH
Confidence 77433
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.95 E-value=8e-06 Score=81.55 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..++|+|||.|.||.++|..+... | .+|..|+|+.+.... ..
T Consensus 141 ~g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~~~---------------------------~~----- 182 (313)
T 2ekl_A 141 AGKTIGIVGFGRIGTKVGIIANAM-G-----MKVLAYDILDIREKA---------------------------EK----- 182 (313)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHHHH---------------------------HH-----
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCCcchhHH---------------------------Hh-----
Confidence 347999999999999999999887 8 899999998753210 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh-HHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~-~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
+ ++.. .++++++++||+|++++|... ++.++ +...+.+++ ++++|.++.|
T Consensus 183 ----~--------------------g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~---ga~lIn~arg 234 (313)
T 2ekl_A 183 ----I--------------------NAKA-VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKD---NVIIVNTSRA 234 (313)
T ss_dssp ----T--------------------TCEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCT---TEEEEESSCG
T ss_pred ----c--------------------Ccee-cCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCC---CCEEEECCCC
Confidence 0 1222 367888899999999999543 44444 334455666 6788888776
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.95 E-value=2.7e-05 Score=68.60 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=55.7
Q ss_pred CCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 42 ~~mkI~IIGa----GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
++.+|+|||+ |.||..++..|.+. | ++|+-++++.+. ..
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~-G-----~~V~~vnp~~~~-----------------------------i~-- 55 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSK-G-----FEVLPVNPNYDE-----------------------------IE-- 55 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHT-T-----CEEEEECTTCSE-----------------------------ET--
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHC-C-----CEEEEeCCCCCe-----------------------------EC--
Confidence 4578999999 99999999999988 8 765554443211 00
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHH
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~ 182 (461)
++.+..+++++...+|++++++|+..+.++++++..
T Consensus 56 -----------------------------G~~~~~s~~el~~~vDlvii~vp~~~v~~v~~~~~~ 91 (138)
T 1y81_A 56 -----------------------------GLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVE 91 (138)
T ss_dssp -----------------------------TEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred -----------------------------CeeecCCHHHhCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence 233445566666679999999999999999988765
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=5.6e-05 Score=74.91 Aligned_cols=122 Identities=12% Similarity=0.089 Sum_probs=77.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.+|+++|..|+.+ +.. .++.|+|.+++.++-.. .+ +.... .+++.
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~-~~~---~el~L~Di~~~~~~G~a----~D-L~h~~----------~~~~~------- 54 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLN-LDV---DEIALVDIAEDLAVGEA----MD-LAHAA----------AGIDK------- 54 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-SCC---SEEEEECSSHHHHHHHH----HH-HHHHH----------GGGTC-------
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCC---CEEEEEeCCCCcchhhh----hh-hhccc----------ccCCC-------
Confidence 8999999999999999999988 643 48999999876544210 01 11100 01110
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cch--------------hHHHHHHHHHHHhhcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST--------------ETKEVFEEISRYWKER 187 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps~--------------~~~~vl~~i~~~l~~~ 187 (461)
...+..++|.+ ++++||+||++- |.. .++++.+++.++..
T Consensus 55 ---------------------~~~i~~~~d~~-~~~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p-- 110 (294)
T 2x0j_A 55 ---------------------YPKIVGGADYS-LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-- 110 (294)
T ss_dssp ---------------------CCEEEEESCGG-GGTTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTST--
T ss_pred ---------------------CCeEecCCCHH-HhCCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 01345567775 589999999976 221 34555566665543
Q ss_pred CCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
+.+++.++|-++.- ..+.++..|.|..+
T Consensus 111 --~aivlvvsNPvd~~----------t~i~~k~sg~p~~r 138 (294)
T 2x0j_A 111 --ESKILVVTNPMDVM----------TYIMWKESGKPRNE 138 (294)
T ss_dssp --TCEEEECSSSHHHH----------HHHHHHHSSCCTTS
T ss_pred --ceEEEEecCcchhh----------HHhhHHHcCCChhh
Confidence 57888888876542 24556666655444
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=97.94 E-value=1e-05 Score=83.38 Aligned_cols=98 Identities=20% Similarity=0.174 Sum_probs=70.0
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
-.-++|+|||.|.||.++|..+... | .+|..|+|+....+. ...
T Consensus 189 l~gktvGIIGlG~IG~~vA~~l~a~-G-----~~V~~~d~~~~~~~~--------------------------~~~---- 232 (393)
T 2nac_A 189 LEAMHVGTVAAGRIGLAVLRRLAPF-D-----VHLHYTDRHRLPESV--------------------------EKE---- 232 (393)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHGGG-T-----CEEEEECSSCCCHHH--------------------------HHH----
T ss_pred CCCCEEEEEeECHHHHHHHHHHHhC-C-----CEEEEEcCCccchhh--------------------------Hhh----
Confidence 3457999999999999999999877 7 899999988643221 000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tk 198 (461)
+ ++....+++++++.||+|++++|.. .++.++ ++....+++ ++++|.++.
T Consensus 233 -----~--------------------G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aR 284 (393)
T 2nac_A 233 -----L--------------------NLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR---GAYIVNTAR 284 (393)
T ss_dssp -----H--------------------TCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCT---TEEEEECSC
T ss_pred -----c--------------------CceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCC---CCEEEECCC
Confidence 0 2233357888899999999999953 555555 344455666 688898887
Q ss_pred cCcc
Q 012547 199 GVEA 202 (461)
Q Consensus 199 Gi~~ 202 (461)
|=..
T Consensus 285 G~~v 288 (393)
T 2nac_A 285 GKLC 288 (393)
T ss_dssp GGGB
T ss_pred chHh
Confidence 7433
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.3e-05 Score=81.22 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=69.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.||.++|..+..- | .+|..|+|+....+. ..
T Consensus 173 gktvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~------- 213 (345)
T 4g2n_A 173 GRRLGIFGMGRIGRAIATRARGF-G-----LAIHYHNRTRLSHAL--------------------------EE------- 213 (345)
T ss_dssp TCEEEEESCSHHHHHHHHHHHTT-T-----CEEEEECSSCCCHHH--------------------------HT-------
T ss_pred CCEEEEEEeChhHHHHHHHHHHC-C-----CEEEEECCCCcchhh--------------------------hc-------
Confidence 37999999999999999999876 7 899999998632211 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
......++++++++||+|++++|. ..++.++ ++....+++ ++++|.++.|=
T Consensus 214 ------------------------g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~---gailIN~aRG~ 266 (345)
T 4g2n_A 214 ------------------------GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPE---GAVVINISRGD 266 (345)
T ss_dssp ------------------------TCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCT---TEEEEECSCGG
T ss_pred ------------------------CCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCC---CcEEEECCCCc
Confidence 123346788999999999999994 4444444 344455666 68899888775
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 267 ~vd 269 (345)
T 4g2n_A 267 LIN 269 (345)
T ss_dssp GBC
T ss_pred hhC
Confidence 444
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.3e-05 Score=72.65 Aligned_cols=81 Identities=23% Similarity=0.358 Sum_probs=59.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|||+|.||..++..|.+. | ++| .+|++++. .+
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~-g-----~~lv~v~d~~~~-~~------------------------------------ 37 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN-G-----FEIAAILDVRGE-HE------------------------------------ 37 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEECSSCC-CT------------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHhcC-C-----CEEEEEEecCcc-hh------------------------------------
Confidence 6999999999999999999876 6 776 68887741 10
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh-cCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av-~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
. ..+|+++.+ .++|+||+|+|++...+++... +.. +..+++...+
T Consensus 38 ------------------------~--~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~---l~~---G~~vv~~~~~ 83 (236)
T 2dc1_A 38 ------------------------K--MVRGIDEFLQREMDVAVEAASQQAVKDYAEKI---LKA---GIDLIVLSTG 83 (236)
T ss_dssp ------------------------T--EESSHHHHTTSCCSEEEECSCHHHHHHHHHHH---HHT---TCEEEESCGG
T ss_pred ------------------------h--hcCCHHHHhcCCCCEEEECCCHHHHHHHHHHH---HHC---CCcEEEECcc
Confidence 1 235667766 6899999999998877776543 344 5666655443
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.2e-05 Score=71.28 Aligned_cols=84 Identities=17% Similarity=0.010 Sum_probs=58.3
Q ss_pred HHHHhhcCCCCCCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHh
Q 012547 31 ELRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRR 106 (461)
Q Consensus 31 ~~~~~~~~~~~~~mkI~IIGa----GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~ 106 (461)
++++++.. +.+|+|||+ |.||..++..|.+. | ++|+.++++.. -+.
T Consensus 5 ~l~~ll~~----p~~IavIGas~~~g~~G~~~~~~L~~~-G-----~~v~~vnp~~~-g~~------------------- 54 (145)
T 2duw_A 5 DIAGILTS----TRTIALVGASDKPDRPSYRVMKYLLDQ-G-----YHVIPVSPKVA-GKT------------------- 54 (145)
T ss_dssp SHHHHHHH----CCCEEEESCCSCTTSHHHHHHHHHHHH-T-----CCEEEECSSST-TSE-------------------
T ss_pred HHHHHHhC----CCEEEEECcCCCCCChHHHHHHHHHHC-C-----CEEEEeCCccc-ccc-------------------
Confidence 35566622 457999999 89999999999998 8 66555544320 000
Q ss_pred hhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHH
Q 012547 107 LIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 107 ~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~ 182 (461)
.. ++.+..+++++...+|++++++|+..+.++++++..
T Consensus 55 -------i~-------------------------------G~~~~~sl~el~~~~Dlvii~vp~~~v~~v~~~~~~ 92 (145)
T 2duw_A 55 -------LL-------------------------------GQQGYATLADVPEKVDMVDVFRNSEAAWGVAQEAIA 92 (145)
T ss_dssp -------ET-------------------------------TEECCSSTTTCSSCCSEEECCSCSTHHHHHHHHHHH
T ss_pred -------cC-------------------------------CeeccCCHHHcCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence 00 223334455555678999999999999999988776
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.92 E-value=4e-05 Score=76.66 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=66.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+++||+|||+|.||..++..|.+. . +.+|. +++++++.++.+.+
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~a~------------------------------ 47 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAAN-P----DLELVVIADPFIEGAQRLAE------------------------------ 47 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHC-T----TEEEEEEECSSHHHHHHHHH------------------------------
T ss_pred CceEEEEECCcHHHHHHHHHHHhC-C----CcEEEEEECCCHHHHHHHHH------------------------------
Confidence 358999999999999999998875 2 26655 78888765543110
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.+ +....+|+++++. ++|+|++|+|+....+++..... . +.. |.+-|
T Consensus 48 ----~~--------------------g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~---~---gk~-v~~EK 96 (344)
T 3euw_A 48 ----AN--------------------GAEAVASPDEVFARDDIDGIVIGSPTSTHVDLITRAVE---R---GIP-ALCEK 96 (344)
T ss_dssp ----TT--------------------TCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHHHHHH---T---TCC-EEECS
T ss_pred ----Hc--------------------CCceeCCHHHHhcCCCCCEEEEeCCchhhHHHHHHHHH---c---CCc-EEEEC
Confidence 00 2355688888887 78999999999988887766543 3 333 33666
Q ss_pred cCcc
Q 012547 199 GVEA 202 (461)
Q Consensus 199 Gi~~ 202 (461)
.+..
T Consensus 97 P~~~ 100 (344)
T 3euw_A 97 PIDL 100 (344)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 6544
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=97.92 E-value=1e-05 Score=82.44 Aligned_cols=98 Identities=22% Similarity=0.228 Sum_probs=69.8
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
+...++|+|||.|.||.++|..+... | .+ |..|+|+....+. ...
T Consensus 161 ~l~g~tvgIIG~G~IG~~vA~~l~~~-G-----~~~V~~~d~~~~~~~~--------------------------~~~-- 206 (364)
T 2j6i_A 161 DIEGKTIATIGAGRIGYRVLERLVPF-N-----PKELLYYDYQALPKDA--------------------------EEK-- 206 (364)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHGGG-C-----CSEEEEECSSCCCHHH--------------------------HHH--
T ss_pred cCCCCEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEECCCccchhH--------------------------HHh--
Confidence 33457999999999999999999877 7 76 9999988643221 000
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEE
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISL 196 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~ 196 (461)
.++....++++++++||+|++++|.. .++.++ ++..+.+++ ++++|.+
T Consensus 207 ---------------------------~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---ga~lIn~ 256 (364)
T 2j6i_A 207 ---------------------------VGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK---GAWLVNT 256 (364)
T ss_dssp ---------------------------TTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEEC
T ss_pred ---------------------------cCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCC---CCEEEEC
Confidence 02333457888899999999999975 455544 334455666 6788888
Q ss_pred eecCc
Q 012547 197 AKGVE 201 (461)
Q Consensus 197 tkGi~ 201 (461)
..|=.
T Consensus 257 arG~~ 261 (364)
T 2j6i_A 257 ARGAI 261 (364)
T ss_dssp SCGGG
T ss_pred CCCch
Confidence 87733
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.92 E-value=8.2e-05 Score=75.27 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=77.5
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.|||+|||+ |.+|+++|..++.. |.. .+|.++|+++++++.... + ++.. .+ +
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~-g~~---~evvLiDi~~~k~~g~a~----D-L~~~-----------~~-~------ 60 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMM-RLT---PNLCLYDPFAVGLEGVAE----E-IRHC-----------GF-E------ 60 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHT-TCC---SCEEEECSCHHHHHHHHH----H-HHHH-----------CC-T------
T ss_pred CCEEEEECCCChHHHHHHHHHHhc-CCC---CEEEEEeCCchhHHHHHH----h-hhhC-----------cC-C------
Confidence 479999998 99999999999987 731 489999998765542110 0 1100 01 1
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cc--------------hhHHHHHHHHHHHhh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps--------------~~~~~vl~~i~~~l~ 185 (461)
..++.+++|..+++++||+||++. |. ..++++.+.+..+..
T Consensus 61 -----------------------~~~i~~t~d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p 117 (343)
T 3fi9_A 61 -----------------------GLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCP 117 (343)
T ss_dssp -----------------------TCCCEEESCHHHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred -----------------------CCceEEcCCHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 014677889988899999999986 22 124455555555543
Q ss_pred ccCCCCE-EEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 186 ERITVPV-IISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 186 ~~~~~~i-IIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+.+ ++.++|-+..- ..++.+..|.|..++
T Consensus 118 ----~a~~vlvvsNPvd~~----------t~i~~k~sg~p~~rv 147 (343)
T 3fi9_A 118 ----DCKHVIIIFNPADIT----------GLVTLIYSGLKPSQV 147 (343)
T ss_dssp ----TCCEEEECSSSHHHH----------HHHHHHHHTCCGGGE
T ss_pred ----CcEEEEEecCchHHH----------HHHHHHHcCCCcceE
Confidence 453 67777765432 244555556554554
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2e-05 Score=67.64 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=33.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+++|.|+|+|.+|..++..|.+. | ++|++++++++.++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~-g-----~~v~~~d~~~~~~~ 43 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRM-G-----HEVLAVDINEEKVN 43 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-T-----CCCEEEESCHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 35799999999999999999998 8 89999999876554
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=8.3e-06 Score=81.14 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=67.2
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
...++|+|||.|.||.++|..+... | .+|..|+|+.+ +. +
T Consensus 122 l~g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~dr~~~--~~----------------------------~---- 161 (303)
T 1qp8_A 122 IQGEKVAVLGLGEIGTRVGKILAAL-G-----AQVRGFSRTPK--EG----------------------------P---- 161 (303)
T ss_dssp CTTCEEEEESCSTHHHHHHHHHHHT-T-----CEEEEECSSCC--CS----------------------------S----
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCcc--cc----------------------------C----
Confidence 3458999999999999999999887 7 89999998763 10 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHH-HHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~-~i~~~l~~~~~~~iIIs~tk 198 (461)
.....+++++++.||+|++++|.. .++.++. +..+.+++ ++++|.++.
T Consensus 162 ---------------------------~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~---gailin~sr 211 (303)
T 1qp8_A 162 ---------------------------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAE---DAVFVNVGR 211 (303)
T ss_dssp ---------------------------SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCT---TCEEEECSC
T ss_pred ---------------------------cccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCC---CCEEEECCC
Confidence 001235677889999999999975 5666653 45566676 788888887
Q ss_pred cC
Q 012547 199 GV 200 (461)
Q Consensus 199 Gi 200 (461)
|=
T Consensus 212 g~ 213 (303)
T 1qp8_A 212 AE 213 (303)
T ss_dssp GG
T ss_pred Cc
Confidence 63
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-05 Score=79.10 Aligned_cols=92 Identities=21% Similarity=0.291 Sum_probs=66.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..++|+|||.|.||..+|..+... | .+|..|+|+.+. +. ...
T Consensus 141 ~g~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~-~~--------------------------~~~----- 182 (307)
T 1wwk_A 141 EGKTIGIIGFGRIGYQVAKIANAL-G-----MNILLYDPYPNE-ER--------------------------AKE----- 182 (307)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCH-HH--------------------------HHH-----
T ss_pred CCceEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCCCh-hh--------------------------Hhh-----
Confidence 347999999999999999999887 8 899999998753 11 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
+ ++.. .++++++++||+|++++|.. .++.++ ++..+.+++ ++++|.++.|
T Consensus 183 ----~--------------------g~~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lin~arg 234 (307)
T 1wwk_A 183 ----V--------------------NGKF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKK---TAILINTSRG 234 (307)
T ss_dssp ----T--------------------TCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCT---TCEEEECSCG
T ss_pred ----c--------------------Cccc-cCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCC---CeEEEECCCC
Confidence 0 1222 36788889999999999964 344444 344455666 6888888776
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.1e-05 Score=82.00 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=69.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.||.++|..+... | .+|..|+|+... +. ...
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~-~~--------------------------~~~------ 200 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAF-G-----MNVLVWGRENSK-ER--------------------------ARA------ 200 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSHHHH-HH--------------------------HHH------
T ss_pred CCEEEEEeECHHHHHHHHHHHhC-C-----CEEEEECCCCCH-HH--------------------------HHh------
Confidence 47999999999999999999877 8 899999987521 10 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.++...+++++++++||+|++++|. ..++.++ ++..+.+++ ++++|.++.|=
T Consensus 201 -----------------------~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRg~ 254 (352)
T 3gg9_A 201 -----------------------DGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKP---TALFVNTSRAE 254 (352)
T ss_dssp -----------------------TTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TCEEEECSCGG
T ss_pred -----------------------cCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCC---CcEEEECCCch
Confidence 0234456888999999999999995 3444443 344455666 78999888774
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 255 ~vd 257 (352)
T 3gg9_A 255 LVE 257 (352)
T ss_dssp GBC
T ss_pred hhc
Confidence 443
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=4.2e-05 Score=72.49 Aligned_cols=97 Identities=14% Similarity=0.284 Sum_probs=63.6
Q ss_pred hHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHH--HHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhh
Q 012547 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAM--LQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102 (461)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~--La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~ 102 (461)
.++-++++++.+|... .+||+|||+|++|.+++.. +... |+ .-|-++|.+++++..
T Consensus 69 v~~L~~~~~~~lg~~~--~~rV~IIGAG~~G~~La~~~~~~~~-g~----~iVg~~D~dp~k~g~--------------- 126 (215)
T 2vt3_A 69 VDYLLSFFRKTLDQDE--MTDVILIGVGNLGTAFLHYNFTKNN-NT----KISMAFDINESKIGT--------------- 126 (215)
T ss_dssp HHHHHHHHHHHHHHC-----CEEEECCSHHHHHHHHCC-------C----CEEEEEESCTTTTTC---------------
T ss_pred hHHHHHHHHHHhCcCC--CCEEEEEccCHHHHHHHHHHhcccC-Cc----EEEEEEeCCHHHHHh---------------
Confidence 4455677787777643 4789999999999999995 3333 41 345578888754321
Q ss_pred hHHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHH
Q 012547 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 103 ~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~ 182 (461)
...++ ++...+|+++.+++.|++++|+|+....++++.+..
T Consensus 127 ----------~i~gv-----------------------------~V~~~~dl~eli~~~D~ViIAvPs~~~~ei~~~l~~ 167 (215)
T 2vt3_A 127 ----------EVGGV-----------------------------PVYNLDDLEQHVKDESVAILTVPAVAAQSITDRLVA 167 (215)
T ss_dssp ----------EETTE-----------------------------EEEEGGGHHHHCSSCCEEEECSCHHHHHHHHHHHHH
T ss_pred ----------HhcCC-----------------------------eeechhhHHHHHHhCCEEEEecCchhHHHHHHHHHH
Confidence 11111 244567788887667999999999988888887754
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.1e-05 Score=75.35 Aligned_cols=95 Identities=8% Similarity=0.133 Sum_probs=65.6
Q ss_pred CceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++||+|||+|.||.. ++..|.+..+ .++. +++++++.++.+.++ |
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~a~~---------------------~------- 52 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSER-----FEFVGAFTPNKVKREKICSD---------------------Y------- 52 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSS-----SEEEEEECSCHHHHHHHHHH---------------------H-------
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCC-----eEEEEEECCCHHHHHHHHHH---------------------c-------
Confidence 479999999999996 8888876413 5655 899998765532110 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
++...+|+++.+.++|+|++|+|+....+++.... .. +.. |.+-|.+
T Consensus 53 --------------------------~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~~al---~~---gk~-vl~EKP~ 99 (308)
T 3uuw_A 53 --------------------------RIMPFDSIESLAKKCDCIFLHSSTETHYEIIKILL---NL---GVH-VYVDKPL 99 (308)
T ss_dssp --------------------------TCCBCSCHHHHHTTCSEEEECCCGGGHHHHHHHHH---HT---TCE-EEECSSS
T ss_pred --------------------------CCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHHHHH---HC---CCc-EEEcCCC
Confidence 11125778888889999999999998888776654 33 344 3467766
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
...
T Consensus 100 ~~~ 102 (308)
T 3uuw_A 100 AST 102 (308)
T ss_dssp SSS
T ss_pred CCC
Confidence 543
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.85 E-value=7.5e-05 Score=74.26 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=65.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++||+|||+|.||..++..|.+..+ .++. +++++++.++.+.+ . +
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~~~--------~-------------~-------- 48 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNAD-----ARLVAVADAFPAAAEAIAG--------A-------------Y-------- 48 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTT-----EEEEEEECSSHHHHHHHHH--------H-------------T--------
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCC-----cEEEEEECCCHHHHHHHHH--------H-------------h--------
Confidence 5799999999999999999987513 6665 78888765543110 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
++. .+|+++++. +.|+|++|+|+....+++..... . +.. |.+-|.
T Consensus 49 -------------------------~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~---~---gk~-v~~EKP 95 (331)
T 4hkt_A 49 -------------------------GCE-VRTIDAIEAAADIDAVVICTPTDTHADLIERFAR---A---GKA-IFCEKP 95 (331)
T ss_dssp -------------------------TCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---T---TCE-EEECSC
T ss_pred -------------------------CCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHHHHHH---c---CCc-EEEecC
Confidence 234 578888876 78999999999988887766543 2 333 346666
Q ss_pred Ccc
Q 012547 200 VEA 202 (461)
Q Consensus 200 i~~ 202 (461)
+..
T Consensus 96 ~~~ 98 (331)
T 4hkt_A 96 IDL 98 (331)
T ss_dssp SCS
T ss_pred CCC
Confidence 544
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.8e-06 Score=82.14 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=68.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.||.++|..+... | .+|..|+|+.+..+. ..
T Consensus 140 g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~------- 180 (324)
T 3hg7_A 140 GRTLLILGTGSIGQHIAHTGKHF-G-----MKVLGVSRSGRERAG--------------------------FD------- 180 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCCTT--------------------------CS-------
T ss_pred cceEEEEEECHHHHHHHHHHHhC-C-----CEEEEEcCChHHhhh--------------------------hh-------
Confidence 47999999999999999999887 8 899999998632110 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
......++++++++||+|++++|. ..++.++ ++....+++ ++++|.++.|=
T Consensus 181 ------------------------~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---gailIN~aRG~ 233 (324)
T 3hg7_A 181 ------------------------QVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKP---GAILFNVGRGN 233 (324)
T ss_dssp ------------------------EEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCT---TCEEEECSCGG
T ss_pred ------------------------cccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCC---CcEEEECCCch
Confidence 111235788889999999999994 3444444 233344565 78999988875
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 234 ~vd 236 (324)
T 3hg7_A 234 AIN 236 (324)
T ss_dssp GBC
T ss_pred hhC
Confidence 444
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.6e-05 Score=75.39 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=43.2
Q ss_pred CcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.|-...+|-...--+.-|++. +. +... +|+|||+|.||.+++..|... | .+|++|+|+.++++
T Consensus 91 ~g~~~g~ntd~~g~~~~l~~~-~~-~l~~-~v~iiG~G~~g~~~a~~l~~~-g-----~~v~v~~r~~~~~~ 153 (263)
T 2d5c_A 91 EGRLFGFNTDAPGFLEALKAG-GI-PLKG-PALVLGAGGAGRAVAFALREA-G-----LEVWVWNRTPQRAL 153 (263)
T ss_dssp TTEEEEECCHHHHHHHHHHHT-TC-CCCS-CEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHH
T ss_pred CCeEEEeCCCHHHHHHHHHHh-CC-CCCC-eEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 444444454443333334432 22 3334 899999999999999999988 7 78999999986554
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.3e-05 Score=81.07 Aligned_cols=96 Identities=17% Similarity=0.260 Sum_probs=69.9
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+-.-++|+|||.|.||..+|..+... | .+|..|+|+.... ..
T Consensus 142 el~gktlGiIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~----------------------------~~---- 183 (404)
T 1sc6_A 142 EARGKKLGIIGYGHIGTQLGILAESL-G-----MYVYFYDIENKLP----------------------------LG---- 183 (404)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCC----------------------------CT----
T ss_pred ccCCCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEEcCCchhc----------------------------cC----
Confidence 33457999999999999999999877 8 8999999875310 00
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~t 197 (461)
.+....+++++++.||+|++++|.. .++.++ ++....+++ ++++|.++
T Consensus 184 ---------------------------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---ga~lIN~a 233 (404)
T 1sc6_A 184 ---------------------------NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKP---GSLLINAS 233 (404)
T ss_dssp ---------------------------TCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCT---TEEEEECS
T ss_pred ---------------------------CceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCC---CeEEEECC
Confidence 1233457888899999999999964 455555 334455666 68888888
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
.|=..+
T Consensus 234 Rg~~vd 239 (404)
T 1sc6_A 234 RGTVVD 239 (404)
T ss_dssp CSSSBC
T ss_pred CChHHh
Confidence 774433
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.3e-05 Score=81.25 Aligned_cols=93 Identities=23% Similarity=0.310 Sum_probs=66.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.||..+|..+..- | .+|..|++++... ..
T Consensus 156 gktvGIIGlG~IG~~vA~~l~~~-G-----~~V~~yd~~~~~~----------------------------~~------- 194 (416)
T 3k5p_A 156 GKTLGIVGYGNIGSQVGNLAESL-G-----MTVRYYDTSDKLQ----------------------------YG------- 194 (416)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECTTCCCC----------------------------BT-------
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCcchhc----------------------------cc-------
Confidence 47999999999999999999877 8 8999999875210 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
......++++++++||+|++++|.. .++.++ ++....+++ ++++|.++.|-
T Consensus 195 ------------------------~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~---gailIN~aRG~ 247 (416)
T 3k5p_A 195 ------------------------NVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKK---GAFLINNARGS 247 (416)
T ss_dssp ------------------------TBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCT---TEEEEECSCTT
T ss_pred ------------------------CcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCC---CcEEEECCCCh
Confidence 1233467889999999999999963 455444 334445666 78899888775
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 248 vvd 250 (416)
T 3k5p_A 248 DVD 250 (416)
T ss_dssp SBC
T ss_pred hhh
Confidence 444
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.81 E-value=7.7e-05 Score=74.64 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=65.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++||+|||+|.||..++..|.+..+ .++. +++++++.++.+.+ . + +
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~~~--------~-------------~--~----- 48 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDD-----AILYAISDVREDRLREMKE--------K-------------L--G----- 48 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTT-----EEEEEEECSCHHHHHHHHH--------H-------------H--T-----
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCC-----cEEEEEECCCHHHHHHHHH--------H-------------h--C-----
Confidence 4799999999999999999876413 5655 78898775543110 0 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
-....+|+++.+. ++|+|++|+|+....+++.... .. +..|+ +-|.
T Consensus 49 -------------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~~---gk~v~-~EKP 96 (344)
T 3ezy_A 49 -------------------------VEKAYKDPHELIEDPNVDAVLVCSSTNTHSELVIACA---KA---KKHVF-CEKP 96 (344)
T ss_dssp -------------------------CSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHH---HT---TCEEE-EESC
T ss_pred -------------------------CCceeCCHHHHhcCCCCCEEEEcCCCcchHHHHHHHH---hc---CCeEE-EECC
Confidence 0135678888877 7999999999998887776654 33 33443 7776
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
+...
T Consensus 97 ~~~~ 100 (344)
T 3ezy_A 97 LSLN 100 (344)
T ss_dssp SCSC
T ss_pred CCCC
Confidence 5543
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0001 Score=73.69 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=66.2
Q ss_pred CceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La-~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++||+|||+|.||..++..+. ...+ .++. +++++++.++.+.+ . + .
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~-----~~l~av~d~~~~~~~~~~~--------~-------------~-g----- 49 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSG-----AEIVAVTDVNQEAAQKVVE--------Q-------------Y-Q----- 49 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSS-----EEEEEEECSSHHHHHHHHH--------H-------------T-T-----
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCC-----cEEEEEEcCCHHHHHHHHH--------H-------------h-C-----
Confidence 479999999999999999998 4313 5654 78888775543110 0 0 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
......+|+++.+.+ .|+|++|+|+....+++.... .. +..| .+-|
T Consensus 50 -------------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~~---Gk~v-l~EK 97 (344)
T 3mz0_A 50 -------------------------LNATVYPNDDSLLADENVDAVLVTSWGPAHESSVLKAI---KA---QKYV-FCEK 97 (344)
T ss_dssp -------------------------CCCEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHH---HT---TCEE-EECS
T ss_pred -------------------------CCCeeeCCHHHHhcCCCCCEEEECCCchhHHHHHHHHH---HC---CCcE-EEcC
Confidence 013566888888765 899999999998888776654 33 3333 4677
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
.+...
T Consensus 98 P~a~~ 102 (344)
T 3mz0_A 98 PLATT 102 (344)
T ss_dssp CSCSS
T ss_pred CCCCC
Confidence 66543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.79 E-value=6.8e-05 Score=67.92 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=33.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.++|.|+|+|.+|..+|..|.+..| ++|++++++++.++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g-----~~V~vid~~~~~~~~ 78 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYG-----KISLGIEIREEAAQQ 78 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHC-----SCEEEEESCHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccC-----CeEEEEECCHHHHHH
Confidence 4689999999999999999986414 899999999876653
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.78 E-value=4e-05 Score=73.92 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=77.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
||||+|+|+|.||..++..+.+. + +++. +++++.+. .
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~-~-----~eLva~~d~~~~~-------------------------------~----- 40 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEK-G-----HEIVGVIENTPKA-------------------------------T----- 40 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEECSSCC--------------------------------------
T ss_pred ceEEEEECcCHHHHHHHHHHHhC-C-----CEEEEEEecCccc-------------------------------c-----
Confidence 58999999999999999999988 5 5433 34554320 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.++.+++|+++.+ ++|+||-++.+..+.+.++ +.. +..+|+.+.|+.
T Consensus 41 ------------------------~gv~v~~dl~~l~-~~DVvIDft~p~a~~~~~~-----l~~---g~~vVigTTG~s 87 (243)
T 3qy9_A 41 ------------------------TPYQQYQHIADVK-GADVAIDFSNPNLLFPLLD-----EDF---HLPLVVATTGEK 87 (243)
T ss_dssp ------------------------CCSCBCSCTTTCT-TCSEEEECSCHHHHHHHHT-----SCC---CCCEEECCCSSH
T ss_pred ------------------------CCCceeCCHHHHh-CCCEEEEeCChHHHHHHHH-----Hhc---CCceEeCCCCCC
Confidence 0233456777766 8999997776666555554 343 456677888986
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcC
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRR 266 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~ 266 (461)
.+. .+.+.+... ...++..|||..-+.-- .+.++.+.+.|..
T Consensus 88 ~e~---------~~~l~~aa~----~~~v~~a~N~S~Gv~l~----------~~~~~~aa~~l~~ 129 (243)
T 3qy9_A 88 EKL---------LNKLDELSQ----NMPVFFSANMSYGVHAL----------TKILAAAVPLLDD 129 (243)
T ss_dssp HHH---------HHHHHHHTT----TSEEEECSSCCHHHHHH----------HHHHHHHHHHTTT
T ss_pred HHH---------HHHHHHHHh----cCCEEEECCccHHHHHH----------HHHHHHHHHhcCC
Confidence 541 133444432 24568889985422210 2345566667754
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.78 E-value=4.9e-05 Score=75.82 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=65.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+++||+|||+|.||..++..|.+. . +.+|. +++++++.++.+.+ . +
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~~~--------~-------------~------- 50 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRES-A----QAEVRGIASRRLENAQKMAK--------E-------------L------- 50 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHS-S----SEEEEEEBCSSSHHHHHHHH--------H-------------T-------
T ss_pred CeEEEEEECchHHHHHHHHHHHhC-C----CcEEEEEEeCCHHHHHHHHH--------H-------------c-------
Confidence 458999999999999999999875 2 25655 78888776543110 0 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
++ .+.+|+++.+. ++|+|++|+|+....+++..... . +.. |.+-
T Consensus 51 --------------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---~---gk~-vl~E 97 (330)
T 3e9m_A 51 --------------------------AIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAAKLALS---Q---GKP-VLLE 97 (330)
T ss_dssp --------------------------TCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHHHHHHH---T---TCC-EEEC
T ss_pred --------------------------CCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHHHHHHH---C---CCe-EEEe
Confidence 11 34577888776 78999999999988777766543 3 333 3466
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
|.+...
T Consensus 98 KP~~~~ 103 (330)
T 3e9m_A 98 KPFTLN 103 (330)
T ss_dssp SSCCSS
T ss_pred CCCCCC
Confidence 665543
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=2.5e-05 Score=78.68 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=65.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.++|+|||.|.||.++|..+... | .+|..|+|+.+.. . .. .
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~-~----------~~-------------~--------- 186 (333)
T 1j4a_A 146 DQVVGVVGTGHIGQVFMQIMEGF-G-----AKVITYDIFRNPE-L----------EK-------------K--------- 186 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHH-H----------HH-------------T---------
T ss_pred CCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCcchh-H----------Hh-------------h---------
Confidence 37999999999999999999877 7 8999999986421 0 00 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+....+++++++.||+|++++|.. .++.++ +...+.+++ ++++|.++.|=
T Consensus 187 -------------------------~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lIn~arg~ 238 (333)
T 1j4a_A 187 -------------------------GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ---DVVIVNVSRGP 238 (333)
T ss_dssp -------------------------TCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCT---TEEEEECSCGG
T ss_pred -------------------------CeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCC---CcEEEECCCCc
Confidence 011236778888999999999954 355444 334455665 67888887763
Q ss_pred c
Q 012547 201 E 201 (461)
Q Consensus 201 ~ 201 (461)
.
T Consensus 239 ~ 239 (333)
T 1j4a_A 239 L 239 (333)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00013 Score=73.58 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=66.8
Q ss_pred CceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La-~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++||+|||+|.||..++..+. ...+ .++. +++++++.++.+.++ | .
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~-----~~lvav~d~~~~~~~~~a~~---------------------~-g----- 70 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSG-----VEVVAVCDIVAGRAQAALDK---------------------Y-A----- 70 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTT-----EEEEEEECSSTTHHHHHHHH---------------------H-T-----
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCC-----cEEEEEEeCCHHHHHHHHHH---------------------h-C-----
Confidence 579999999999999999998 4313 6654 789988765531110 0 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
......+|+++.+. +.|+|++|+|+....+++..... . +.. |.+-|
T Consensus 71 -------------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---a---Gk~-Vl~EK 118 (357)
T 3ec7_A 71 -------------------------IEAKDYNDYHDLINDKDVEVVIITASNEAHADVAVAALN---A---NKY-VFCEK 118 (357)
T ss_dssp -------------------------CCCEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---T---TCE-EEEES
T ss_pred -------------------------CCCeeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---C---CCC-EEeec
Confidence 01355678888876 48999999999988887766543 3 333 44777
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
.+...
T Consensus 119 Pla~~ 123 (357)
T 3ec7_A 119 PLAVT 123 (357)
T ss_dssp SSCSS
T ss_pred CccCC
Confidence 76554
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.7e-05 Score=79.05 Aligned_cols=88 Identities=23% Similarity=0.271 Sum_probs=65.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..++|+|||.|.||..+|..+... | .+|..|+|+.+..+
T Consensus 143 ~g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~~----------------------------------- 181 (311)
T 2cuk_A 143 QGLTLGLVGMGRIGQAVAKRALAF-G-----MRVVYHARTPKPLP----------------------------------- 181 (311)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSSS-----------------------------------
T ss_pred CCCEEEEEEECHHHHHHHHHHHHC-C-----CEEEEECCCCcccc-----------------------------------
Confidence 347999999999999999999887 7 89999998763110
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHH-HHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~-~i~~~l~~~~~~~iIIs~tkG 199 (461)
+. ..++++++++||+|++++|.. .++.++. +..+.+++ ++++|.++.|
T Consensus 182 --------------------------~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lin~srg 231 (311)
T 2cuk_A 182 --------------------------YP-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKR---GAILLNTARG 231 (311)
T ss_dssp --------------------------SC-BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCT---TCEEEECSCG
T ss_pred --------------------------cc-cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCC---CcEEEECCCC
Confidence 00 235677888999999999976 4555553 34455666 6888888876
Q ss_pred C
Q 012547 200 V 200 (461)
Q Consensus 200 i 200 (461)
=
T Consensus 232 ~ 232 (311)
T 2cuk_A 232 A 232 (311)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=1.9e-05 Score=79.45 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=68.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.||.++|..+... | .+|..|+|+....+. ....
T Consensus 145 g~tvGIIG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~~--------------------------~~~~----- 187 (330)
T 4e5n_A 145 NATVGFLGMGAIGLAMADRLQGW-G-----ATLQYHEAKALDTQT--------------------------EQRL----- 187 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHTTTS-C-----CEEEEECSSCCCHHH--------------------------HHHH-----
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCCCCcHhH--------------------------HHhc-----
Confidence 47999999999999999998876 7 899999998632221 0000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
++.. .+++++++.||+|++++|.. .++.++ ++....+++ ++++|.++.|=
T Consensus 188 ------------------------g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~arg~ 239 (330)
T 4e5n_A 188 ------------------------GLRQ-VACSELFASSDFILLALPLNADTLHLVNAELLALVRP---GALLVNPCRGS 239 (330)
T ss_dssp ------------------------TEEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEECSCGG
T ss_pred ------------------------Ccee-CCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCC---CcEEEECCCCc
Confidence 2222 36888899999999999953 444444 345555666 68889888774
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 240 ~vd 242 (330)
T 4e5n_A 240 VVD 242 (330)
T ss_dssp GBC
T ss_pred hhC
Confidence 433
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=3.6e-05 Score=77.60 Aligned_cols=94 Identities=14% Similarity=0.051 Sum_probs=67.9
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
...++|+|||.|.||..+|..+... | .+|..|+|+.+.... ..
T Consensus 163 l~g~tvgIIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~~---------------------------~~---- 205 (335)
T 2g76_A 163 LNGKTLGILGLGRIGREVATRMQSF-G-----MKTIGYDPIISPEVS---------------------------AS---- 205 (335)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSSCHHHH---------------------------HH----
T ss_pred CCcCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEECCCcchhhh---------------------------hh----
Confidence 3447999999999999999999876 7 899999988642110 00
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tk 198 (461)
+ ++.. .++++++++||+|++++|.. .++.++ ++..+.+++ ++++|.+..
T Consensus 206 -----~--------------------g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~ar 256 (335)
T 2g76_A 206 -----F--------------------GVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKK---GVRVVNCAR 256 (335)
T ss_dssp -----T--------------------TCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCT---TEEEEECSC
T ss_pred -----c--------------------Ccee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCC---CcEEEECCC
Confidence 0 1222 37888899999999999975 455555 345556666 678888776
Q ss_pred cC
Q 012547 199 GV 200 (461)
Q Consensus 199 Gi 200 (461)
|=
T Consensus 257 g~ 258 (335)
T 2g76_A 257 GG 258 (335)
T ss_dssp TT
T ss_pred cc
Confidence 63
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00014 Score=72.44 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=57.5
Q ss_pred CCceEEEECccHHHHHHHHHHH-HhcCCCCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La-~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+++||+|||+|.||..++..+. +..+ .+ |.+++++++.++.+.+ .+
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~-----~~~vav~d~~~~~~~~~a~---------------------~~------ 54 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQG-----VKLVAACALDSNQLEWAKN---------------------EL------ 54 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSS-----EEEEEEECSCHHHHHHHHH---------------------TT------
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCC-----cEEEEEecCCHHHHHHHHH---------------------Hh------
Confidence 4689999999999999999987 4313 66 4578888765442110 00
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHH
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~ 181 (461)
++ .+.+|+++++. ++|+|++|+|+....+++....
T Consensus 55 ---------------------------g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al 92 (346)
T 3cea_A 55 ---------------------------GVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMTIYAM 92 (346)
T ss_dssp ---------------------------CCSEEESCHHHHHTTSCCSEEEECSCGGGHHHHHHHHH
T ss_pred ---------------------------CCCcccCCHHHHhcCCCCCEEEEeCChHhHHHHHHHHH
Confidence 11 44578888776 6899999999988777766543
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.74 E-value=9.1e-05 Score=74.42 Aligned_cols=96 Identities=19% Similarity=0.362 Sum_probs=65.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+++||+|||+|.||..++..+.+. . +.+| .+++++++.++.+.+ . +
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~-~----~~~lvav~d~~~~~~~~~~~--------~-------------~------- 50 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKS-E----KLKLVTCYSRTEDKREKFGK--------R-------------Y------- 50 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTC-S----SEEEEEEECSSHHHHHHHHH--------H-------------H-------
T ss_pred CcceEEEEccCHHHHHHHHHHHhC-C----CcEEEEEECCCHHHHHHHHH--------H-------------c-------
Confidence 457999999999999999988765 2 2664 488998876543110 0 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh--cCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV--WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av--~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
++...+|+++++ .+.|+|++|+|+....+++.... .. +.. |.+-|
T Consensus 51 --------------------------g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al---~~---gk~-vl~EK 97 (354)
T 3db2_A 51 --------------------------NCAGDATMEALLAREDVEMVIITVPNDKHAEVIEQCA---RS---GKH-IYVEK 97 (354)
T ss_dssp --------------------------TCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHHHHHH---HT---TCE-EEEES
T ss_pred --------------------------CCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHH---Hc---CCE-EEEcc
Confidence 122257788887 56899999999988877766544 33 333 44677
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
.+...
T Consensus 98 P~~~~ 102 (354)
T 3db2_A 98 PISVS 102 (354)
T ss_dssp SSCSS
T ss_pred CCCCC
Confidence 66543
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=3.8e-05 Score=77.72 Aligned_cols=92 Identities=21% Similarity=0.267 Sum_probs=66.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||.|.||..+|..+..- | .+|..|+|+.+.. ...
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~----------------------------~~~------- 187 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAM-G-----AKVIAYDVAYNPE----------------------------FEP------- 187 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCGG----------------------------GTT-------
T ss_pred CeEEEEecCHHHHHHHHHHhhC-C-----CEEEEECCChhhh----------------------------hhc-------
Confidence 7999999999999999999877 7 8999999986420 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.... .++++++++||+|++++|. ..++.++ ++....+++ ++++|.++.|=.
T Consensus 188 -----------------------~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRg~~ 240 (343)
T 2yq5_A 188 -----------------------FLTY-TDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKK---SAYLINCARGEL 240 (343)
T ss_dssp -----------------------TCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCT---TCEEEECSCGGG
T ss_pred -----------------------cccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCC---CcEEEECCCChh
Confidence 1122 2788899999999999994 3334333 234445566 788998887744
Q ss_pred cc
Q 012547 202 AE 203 (461)
Q Consensus 202 ~~ 203 (461)
.+
T Consensus 241 vd 242 (343)
T 2yq5_A 241 VD 242 (343)
T ss_dssp BC
T ss_pred hh
Confidence 43
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00013 Score=72.02 Aligned_cols=95 Identities=15% Similarity=0.173 Sum_probs=61.4
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGaGamG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+++||+|||+|.||.. ++..|.+..+ .++. +++++++.++.+.+ . +
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~-----~~lvav~d~~~~~~~~~~~--------~-------------~------ 51 (319)
T 1tlt_A 4 KKLRIGVVGLGGIAQKAWLPVLAAASD-----WTLQGAWSPTRAKALPICE--------S-------------W------ 51 (319)
T ss_dssp -CEEEEEECCSTHHHHTHHHHHHSCSS-----EEEEEEECSSCTTHHHHHH--------H-------------H------
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCC-----eEEEEEECCCHHHHHHHHH--------H-------------c------
Confidence 3589999999999996 8888875313 6665 89998876543111 0 0
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
++.+.+|.++...++|+|++|+|+....+++.... .. +..|+ +-|.
T Consensus 52 ---------------------------g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al---~~---G~~v~-~eKP 97 (319)
T 1tlt_A 52 ---------------------------RIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLL---NA---GVHVC-VDKP 97 (319)
T ss_dssp ---------------------------TCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHHHH---HT---TCEEE-EESS
T ss_pred ---------------------------CCCccCcHHHhhcCCCEEEEeCCchhHHHHHHHHH---Hc---CCeEE-EeCC
Confidence 11134556554467999999999988777776543 33 44444 5665
Q ss_pred Ccc
Q 012547 200 VEA 202 (461)
Q Consensus 200 i~~ 202 (461)
+..
T Consensus 98 ~~~ 100 (319)
T 1tlt_A 98 LAE 100 (319)
T ss_dssp SCS
T ss_pred CCC
Confidence 543
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.70 E-value=8e-05 Score=73.59 Aligned_cols=94 Identities=15% Similarity=0.268 Sum_probs=64.5
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
.+++||+|||+|.||..++..|.+. + +.+ |.+++++++.++. +..
T Consensus 8 ~~~~~igiIG~G~~g~~~~~~l~~~-~----~~~~v~v~d~~~~~~~~--------------------------~~~--- 53 (315)
T 3c1a_A 8 NSPVRLALIGAGRWGKNYIRTIAGL-P----GAALVRLASSNPDNLAL--------------------------VPP--- 53 (315)
T ss_dssp -CCEEEEEEECTTTTTTHHHHHHHC-T----TEEEEEEEESCHHHHTT--------------------------CCT---
T ss_pred CCcceEEEECCcHHHHHHHHHHHhC-C----CcEEEEEEeCCHHHHHH--------------------------HHh---
Confidence 3568999999999999999999875 2 155 4588988764332 100
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
.+...+|+++++. ++|+|++|+|+....+++.... +. +..|+ +-
T Consensus 54 ---------------------------~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al---~~---Gk~v~-~e 99 (315)
T 3c1a_A 54 ---------------------------GCVIESDWRSVVSAPEVEAVIIATPPATHAEITLAAI---AS---GKAVL-VE 99 (315)
T ss_dssp ---------------------------TCEEESSTHHHHTCTTCCEEEEESCGGGHHHHHHHHH---HT---TCEEE-EE
T ss_pred ---------------------------hCcccCCHHHHhhCCCCCEEEEeCChHHHHHHHHHHH---HC---CCcEE-Ec
Confidence 1234567777775 7999999999998887776643 33 44444 66
Q ss_pred ecCcc
Q 012547 198 KGVEA 202 (461)
Q Consensus 198 kGi~~ 202 (461)
|.+..
T Consensus 100 KP~~~ 104 (315)
T 3c1a_A 100 KPLTL 104 (315)
T ss_dssp SSSCS
T ss_pred CCCcC
Confidence 65543
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00013 Score=72.55 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=65.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+++||+|||+|.||..++..+.+. + +.++ .++++++++++.+. .
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~-~----~~~~~av~d~~~~~~~~~a-------------------------~----- 48 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLA-G----NGEVVAVSSRTLESAQAFA-------------------------N----- 48 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHH-C----SEEEEEEECSCSSTTCC---------------------------------
T ss_pred CceEEEEEechHHHHHHHHHHHhC-C----CcEEEEEEcCCHHHHHHHH-------------------------H-----
Confidence 357999999999999999998876 4 2444 47888876554311 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
.+ ++ .+.+|+++.+. +.|+|++|+|+....+++.... .. +..| .+-
T Consensus 49 ----~~--------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~a---Gk~V-l~E 97 (329)
T 3evn_A 49 ----KY--------------------HLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKAAL---LA---GKHV-LVE 97 (329)
T ss_dssp ----CC--------------------CCSCEESCHHHHHTCTTCCEEEECSCGGGHHHHHHHHH---HT---TCEE-EEE
T ss_pred ----Hc--------------------CCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHH---HC---CCeE-EEc
Confidence 00 12 35678888887 7899999999988877776553 33 3443 477
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
|-+...
T Consensus 98 KP~a~~ 103 (329)
T 3evn_A 98 KPFTLT 103 (329)
T ss_dssp SSCCSS
T ss_pred cCCcCC
Confidence 776543
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00021 Score=71.92 Aligned_cols=95 Identities=18% Similarity=0.145 Sum_probs=65.3
Q ss_pred CceEEEECccHHHH-HHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~-alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++||+|||+|.||. .++..|.+. . +.+|. +++++++.++.+.+ . +
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~a~--------~-------------~------- 73 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAE-P----LTEVTAIASRRWDRAKRFTE--------R-------------F------- 73 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHC-T----TEEEEEEEESSHHHHHHHHH--------H-------------H-------
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhC-C----CeEEEEEEcCCHHHHHHHHH--------H-------------c-------
Confidence 58999999999998 788888765 2 26654 78898765543110 0 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
++...+|+++.+. +.|+|++|+|.....+++..... . +.. |.+-|
T Consensus 74 --------------------------g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---a---Gk~-Vl~EK 120 (350)
T 3rc1_A 74 --------------------------GGEPVEGYPALLERDDVDAVYVPLPAVLHAEWIDRALR---A---GKH-VLAEK 120 (350)
T ss_dssp --------------------------CSEEEESHHHHHTCTTCSEEEECCCGGGHHHHHHHHHH---T---TCE-EEEES
T ss_pred --------------------------CCCCcCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHH---C---CCc-EEEeC
Confidence 2233478888876 58999999999988887766543 3 344 44777
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
-+...
T Consensus 121 P~a~~ 125 (350)
T 3rc1_A 121 PLTTD 125 (350)
T ss_dssp SSCSS
T ss_pred CCCCC
Confidence 76554
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2.2e-05 Score=79.65 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=56.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+.++|+|||+|.||.+++..|....+ ..+|.+|+|++++++++.++ +.. .+++
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~----~~~V~V~~r~~~~a~~la~~-----~~~--------------~~g~---- 180 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLG----IEEIVAYDTDPLATAKLIAN-----LKE--------------YSGL---- 180 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSC----CCEEEEECSSHHHHHHHHHH-----HTT--------------CTTC----
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCC----CcEEEEEcCCHHHHHHHHHH-----HHh--------------ccCc----
Confidence 45799999999999999988764312 16899999998876642210 000 0010
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~ 172 (461)
.+...+++++++.++|+||.|||+..
T Consensus 181 -------------------------~~~~~~~~~eav~~aDiVi~aTps~~ 206 (350)
T 1x7d_A 181 -------------------------TIRRASSVAEAVKGVDIITTVTADKA 206 (350)
T ss_dssp -------------------------EEEECSSHHHHHTTCSEEEECCCCSS
T ss_pred -------------------------eEEEeCCHHHHHhcCCEEEEeccCCC
Confidence 24456789999999999999999863
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=97.67 E-value=3.5e-05 Score=77.48 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=65.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.++|+|||.|.||..+|..+... | .+|..|+|+.+.. ...
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~----------------------------~~~------ 185 (331)
T 1xdw_A 146 NCTVGVVGLGRIGRVAAQIFHGM-G-----ATVIGEDVFEIKG----------------------------IED------ 185 (331)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCS----------------------------CTT------
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCccHH----------------------------HHh------
Confidence 37899999999999999999877 7 8999999876421 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+.. .++++++++||+|++++|.. .++.++ ++..+.+++ ++++|.++.|=
T Consensus 186 ------------------------~~~~-~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~---ga~lin~srg~ 237 (331)
T 1xdw_A 186 ------------------------YCTQ-VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKD---GAILVNCARGQ 237 (331)
T ss_dssp ------------------------TCEE-CCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCT---TEEEEECSCGG
T ss_pred ------------------------cccc-CCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCC---CcEEEECCCcc
Confidence 0122 36788889999999999953 444444 334445666 68888888774
Q ss_pred cc
Q 012547 201 EA 202 (461)
Q Consensus 201 ~~ 202 (461)
..
T Consensus 238 ~v 239 (331)
T 1xdw_A 238 LV 239 (331)
T ss_dssp GB
T ss_pred cc
Confidence 33
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=4.9e-05 Score=76.52 Aligned_cols=89 Identities=13% Similarity=0.180 Sum_probs=64.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.++|+|||.|.||..+|..+... | .+|..|+|+.+.. ...
T Consensus 145 g~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~----------------------------~~~------ 184 (333)
T 1dxy_A 145 QQTVGVMGTGHIGQVAIKLFKGF-G-----AKVIAYDPYPMKG----------------------------DHP------ 184 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSS----------------------------CCT------
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCcchh----------------------------hHh------
Confidence 37999999999999999999877 7 8999999886321 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.... .+++++++.||+|++++|.. .++.++ ++....+++ ++++|.++.|
T Consensus 185 ------------------------~~~~-~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~---ga~lIn~srg 235 (333)
T 1dxy_A 185 ------------------------DFDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKP---GAIVINTARP 235 (333)
T ss_dssp ------------------------TCEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCT---TEEEEECSCT
T ss_pred ------------------------cccc-CCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCC---CcEEEECCCC
Confidence 0122 36788889999999999964 344444 334455666 6788887766
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00012 Score=72.06 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=33.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
..++|+|||+|.+|.++|..+... | .+|++|+|+.+..
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~-G-----~~V~~~dr~~~~~ 191 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAAL-G-----AKVKVGARESDLL 191 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSHHHH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEECCHHHH
Confidence 457999999999999999999887 7 8999999987543
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00019 Score=63.37 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=66.1
Q ss_pred HHHHHhhcCCCCCCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHH
Q 012547 30 DELRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLR 105 (461)
Q Consensus 30 ~~~~~~~~~~~~~~mkI~IIGa----GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~ 105 (461)
+.|+++|.. +.+|+|||+ |.+|..++..|.+. | ++ +|..++.. +.
T Consensus 13 ~~l~~ll~~----p~~iaVVGas~~~g~~G~~~~~~l~~~-G-----~~--v~~Vnp~~-~~------------------ 61 (144)
T 2d59_A 13 EDIREILTR----YKKIALVGASPKPERDANIVMKYLLEH-G-----YD--VYPVNPKY-EE------------------ 61 (144)
T ss_dssp HHHHHHHHH----CCEEEEETCCSCTTSHHHHHHHHHHHT-T-----CE--EEEECTTC-SE------------------
T ss_pred HHHHHHHcC----CCEEEEEccCCCCCchHHHHHHHHHHC-C-----CE--EEEECCCC-Ce------------------
Confidence 456677732 458999999 79999999999988 8 65 66666531 10
Q ss_pred hhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhh
Q 012547 106 RLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185 (461)
Q Consensus 106 ~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~ 185 (461)
+. ++.+..++++.....|+++++||+....++++++... .
T Consensus 62 --------i~-------------------------------G~~~y~sl~~l~~~vDlvvi~vp~~~~~~vv~~~~~~-g 101 (144)
T 2d59_A 62 --------VL-------------------------------GRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKK-G 101 (144)
T ss_dssp --------ET-------------------------------TEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHHHH-T
T ss_pred --------EC-------------------------------CeeccCCHHHcCCCCCEEEEEeCHHHHHHHHHHHHHc-C
Confidence 10 2334455566556789999999999999999887753 1
Q ss_pred ccCCCCEEEEEeecCc
Q 012547 186 ERITVPVIISLAKGVE 201 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~ 201 (461)
. . .+.++.|..
T Consensus 102 i----~-~i~~~~g~~ 112 (144)
T 2d59_A 102 A----K-VVWFQYNTY 112 (144)
T ss_dssp C----S-EEEECTTCC
T ss_pred C----C-EEEECCCch
Confidence 1 2 234666764
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.64 E-value=7.4e-05 Score=76.19 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=66.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.||.++|..+..- | .+|..|+++... +. ...
T Consensus 176 gktvGIIGlG~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~------ 216 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLSGF-R-----ARIRVFDPWLPR-SM--------------------------LEE------ 216 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHTTS-C-----CEEEEECSSSCH-HH--------------------------HHH------
T ss_pred CCEEEEecCCcccHHHHHhhhhC-C-----CEEEEECCCCCH-HH--------------------------Hhh------
Confidence 37999999999999999998766 7 899999987531 10 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
..+. ..+++++++.||+|++++|.. .++.++ ++....+++ ++++|.++-|=
T Consensus 217 -----------------------~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~---gailIN~aRG~ 269 (365)
T 4hy3_A 217 -----------------------NGVE-PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRR---GAAFILLSRAD 269 (365)
T ss_dssp -----------------------TTCE-ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCT---TCEEEECSCGG
T ss_pred -----------------------cCee-eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCC---CcEEEECcCCc
Confidence 0122 247889999999999999954 555555 344555676 78999888774
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 270 ~vd 272 (365)
T 4hy3_A 270 VVD 272 (365)
T ss_dssp GSC
T ss_pred hhC
Confidence 443
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00019 Score=71.52 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=67.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|||+ |.+|++++..|+.. |.. ++|.++++++..... .+ +.. ...
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~-~~~---~ev~L~Di~~~~~~a------~d-L~~-------------~~~------- 49 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNS-PLV---SRLTLYDIAHTPGVA------AD-LSH-------------IET------- 49 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC-TTC---SEEEEEESSSHHHHH------HH-HTT-------------SSS-------
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---cEEEEEeCCccHHHH------HH-Hhc-------------cCc-------
Confidence 79999998 99999999999977 531 689999998721110 00 100 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEE---ecCHHHHhcCCCEEEEcCC--c--------------hhHHHHHHHHHHH
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKV---VTNLQEAVWDADIVINGLP--S--------------TETKEVFEEISRY 183 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~---t~dl~~av~~aDiIIiaVp--s--------------~~~~~vl~~i~~~ 183 (461)
...+.. ++|+++++++||+||++.. . ..++++++.+.++
T Consensus 50 ----------------------~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~ 107 (314)
T 1mld_A 50 ----------------------RATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH 107 (314)
T ss_dssp ----------------------SCEEEEEESGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CceEEEecCCCCHHHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 002444 3688888999999999873 2 2366677777766
Q ss_pred hhccCCCCEEEEEeecCc
Q 012547 184 WKERITVPVIISLAKGVE 201 (461)
Q Consensus 184 l~~~~~~~iIIs~tkGi~ 201 (461)
.. +..+|.++|-+.
T Consensus 108 ~p----~a~viv~sNPv~ 121 (314)
T 1mld_A 108 CP----DAMICIISNPVN 121 (314)
T ss_dssp CT----TSEEEECSSCHH
T ss_pred CC----CeEEEEECCCcc
Confidence 53 467777777654
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00021 Score=70.58 Aligned_cols=164 Identities=16% Similarity=0.141 Sum_probs=89.0
Q ss_pred ccccchhHHhhHHHHHhhcCCCCCCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHH
Q 012547 19 HHTNGSLEERLDELRRLMGKAEGDPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEV 96 (461)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~ 96 (461)
||.-|.||.. +.| .+++||+|+| +|.||..++..+....+ .++ -+++++.....-
T Consensus 6 ~~~~~~~~~~-----~~m----~~~irV~V~Ga~GrMGr~i~~~v~~~~~-----~eLvg~vd~~~~~~~G--------- 62 (288)
T 3ijp_A 6 HHHMGTLEAQ-----TQG----PGSMRLTVVGANGRMGRELITAIQRRKD-----VELCAVLVRKGSSFVD--------- 62 (288)
T ss_dssp ------------------------CEEEEESSTTSHHHHHHHHHHHTCSS-----EEEEEEBCCTTCTTTT---------
T ss_pred ccccchhhhh-----hhc----cCCeEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCCccccc---------
Confidence 5667888753 233 2568999999 89999999999886512 443 345665321100
Q ss_pred HhhhhhhHHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHH
Q 012547 97 INSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEV 176 (461)
Q Consensus 97 i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~v 176 (461)
. ..-.+.++ ...++.+++|+++++.++|+||-++++....+.
T Consensus 63 --~----------d~gel~G~--------------------------~~~gv~v~~dl~~ll~~aDVvIDFT~p~a~~~~ 104 (288)
T 3ijp_A 63 --K----------DASILIGS--------------------------DFLGVRITDDPESAFSNTEGILDFSQPQASVLY 104 (288)
T ss_dssp --S----------BGGGGTTC--------------------------SCCSCBCBSCHHHHTTSCSEEEECSCHHHHHHH
T ss_pred --c----------chHHhhcc--------------------------CcCCceeeCCHHHHhcCCCEEEEcCCHHHHHHH
Confidence 0 00001110 002466788999999999999999988776665
Q ss_pred HHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhH
Q 012547 177 FEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKW 256 (461)
Q Consensus 177 l~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~ 256 (461)
+..... . +..+|+.+.|+..+. -+.|.+... .+.++..|||..-+.-- .+.
T Consensus 105 ~~~~l~---~---Gv~vViGTTG~~~e~---------~~~L~~aa~----~~~~~~a~N~SiGv~ll----------~~l 155 (288)
T 3ijp_A 105 ANYAAQ---K---SLIHIIGTTGFSKTE---------EAQIADFAK----YTTIVKSGNMSLGVNLL----------ANL 155 (288)
T ss_dssp HHHHHH---H---TCEEEECCCCCCHHH---------HHHHHHHHT----TSEEEECSCCCHHHHHH----------HHH
T ss_pred HHHHHH---c---CCCEEEECCCCCHHH---------HHHHHHHhC----cCCEEEECCCcHHHHHH----------HHH
Confidence 555443 3 456777788886541 123555432 24568889985422210 234
Q ss_pred HHHHHHHhcCCCceEEe
Q 012547 257 RKPLAKFLRRPHFTVWD 273 (461)
Q Consensus 257 ~~~l~~ll~~~g~~v~~ 273 (461)
++.+.+.|. +++.+.+
T Consensus 156 ~~~aa~~l~-~~~dieI 171 (288)
T 3ijp_A 156 VKRAAKALD-DDFDIEI 171 (288)
T ss_dssp HHHHHHHSC-TTSEEEE
T ss_pred HHHHHHhcC-CCCCEEE
Confidence 566667775 3455544
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00029 Score=74.23 Aligned_cols=136 Identities=21% Similarity=0.208 Sum_probs=81.8
Q ss_pred ceEEEECccHHHHHHH--HHHHHhcCCCC-CCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 44 LRIVGVGAGAWGSVFT--AMLQDSYGYLR-DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 44 mkI~IIGaGamG~alA--~~La~~~G~~~-~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
|||+|||+|+.|.+.. ..++.. ..+. ...+|.++|.++++++.... ..+. .....
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~-~~l~~~~~ei~L~Di~~~rl~~~~~-----~~~~-------------~~~~~--- 58 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQT-DELSREDTHIYLMDVHERRLNASYI-----LARK-------------YVEEL--- 58 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTC-TTTCSTTCEEEEECSCHHHHHHHHH-----HHHH-------------HHHHH---
T ss_pred CEEEEECCCchhhHHHHHHHHHhh-HhcCCCCCEEEEECCCHHHHHHHHH-----HHHH-------------HHHHc---
Confidence 7999999999876532 334432 1111 01479999999887654211 1111 00100
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc------------------------------
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS------------------------------ 170 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps------------------------------ 170 (461)
+ . ...+..|+|.++|+++||+||+++-.
T Consensus 59 -~---~------------------~~~i~~t~d~~eAl~gAD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l 116 (477)
T 3u95_A 59 -N---S------------------PVKVVKTESLDEAIEGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGID 116 (477)
T ss_dssp -T---C------------------CCEEEEESCHHHHHTTCSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTT
T ss_pred -C---C------------------CeEEEEeCCHHHHhCCCCEEEECcccccccccccccccceeeeccCcccceeeccc
Confidence 0 0 01477899999999999999998611
Q ss_pred -h-------------------hHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEE
Q 012547 171 -T-------------------ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILY 230 (461)
Q Consensus 171 -~-------------------~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~v 230 (461)
+ .+.++++++..+++ ++.++..+|-+..- ++.+.++.+.+ .+..
T Consensus 117 ~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P----~A~~in~tNP~~i~----------t~a~~~~~~~k--~vGl 180 (477)
T 3u95_A 117 SQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAP----KAYLMQTANPVFEI----------TQAVRRWTGAN--IIGF 180 (477)
T ss_dssp CBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCT----TCEEEECSSCHHHH----------HHHHHHHHCCC--EEEE
T ss_pred ccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCC----CeEEEEecChHHHH----------HHHHHHhCCCC--eEEE
Confidence 0 23467777777765 68999999877543 35666766532 2344
Q ss_pred EeCcchhHh
Q 012547 231 LGGPNIASE 239 (461)
Q Consensus 231 lsGPn~a~e 239 (461)
+-+|-...+
T Consensus 181 C~~~~~~~~ 189 (477)
T 3u95_A 181 CHGVAGVYE 189 (477)
T ss_dssp CCGGGHHHH
T ss_pred CCCHHHHHH
Confidence 455544333
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00016 Score=74.22 Aligned_cols=118 Identities=17% Similarity=0.158 Sum_probs=66.8
Q ss_pred ccccch-hH-HhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCC----CCCee-EEEEecCchhhhhhhhh
Q 012547 19 HHTNGS-LE-ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYL----RDKVL-IRIWRRPGRSVDRATAE 91 (461)
Q Consensus 19 ~~~~~~-~~-~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~----~~~~~-V~l~~r~~~~~~~~~~~ 91 (461)
||.+|+ |. |.|.. ..+.+++||+|||+|.||...+..+.+. +.+ .+..+ |-+++++++++++..++
T Consensus 6 ~~~~~~~~~~~~~~~------~~Ms~klrvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~elvav~d~~~~~a~~~a~~ 78 (412)
T 4gqa_A 6 HHSSGVDLGTENLYF------QSMSARLNIGLIGSGFMGQAHADAYRRA-AMFYPDLPKRPHLYALADQDQAMAERHAAK 78 (412)
T ss_dssp -------------------------CEEEEEEECCSHHHHHHHHHHHHH-HHHCTTSSSEEEEEEEECSSHHHHHHHHHH
T ss_pred ccccccccccccCcc------ccccccceEEEEcCcHHHHHHHHHHHhc-cccccccCCCeEEEEEEcCCHHHHHHHHHH
Confidence 677887 43 22322 2234568999999999999988888764 210 00134 44778888766542110
Q ss_pred hHHHHHhhhhhhHHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCC
Q 012547 92 HLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLP 169 (461)
Q Consensus 92 ~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVp 169 (461)
| . ...+.+|+++.+. +.|+|++|+|
T Consensus 79 ---------------------~-~-------------------------------~~~~y~d~~~ll~~~~vD~V~I~tp 105 (412)
T 4gqa_A 79 ---------------------L-G-------------------------------AEKAYGDWRELVNDPQVDVVDITSP 105 (412)
T ss_dssp ---------------------H-T-------------------------------CSEEESSHHHHHHCTTCCEEEECSC
T ss_pred ---------------------c-C-------------------------------CCeEECCHHHHhcCCCCCEEEECCC
Confidence 0 0 1245678888775 5799999999
Q ss_pred chhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 170 STETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 170 s~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.....+++..... . +.. |.|-|-+...
T Consensus 106 ~~~H~~~~~~al~---a---Gkh-Vl~EKP~a~~ 132 (412)
T 4gqa_A 106 NHLHYTMAMAAIA---A---GKH-VYCEKPLAVN 132 (412)
T ss_dssp GGGHHHHHHHHHH---T---TCE-EEEESCSCSS
T ss_pred cHHHHHHHHHHHH---c---CCC-eEeecCCcCC
Confidence 9988877766543 3 333 4588887654
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.62 E-value=9.1e-05 Score=73.01 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=64.6
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+...++|+|||+|.+|.++|..+... | .+|++|+|+.+..+.+ .+ + +.
T Consensus 154 ~l~g~~v~IiG~G~iG~~~a~~l~~~-G-----~~V~~~d~~~~~~~~~---------~~--------------~-g~-- 201 (300)
T 2rir_A 154 TIHGSQVAVLGLGRTGMTIARTFAAL-G-----ANVKVGARSSAHLARI---------TE--------------M-GL-- 201 (300)
T ss_dssp CSTTSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHHH---------HH--------------T-TC--
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH---------HH--------------C-CC--
Confidence 34458999999999999999999887 7 8999999987543320 00 0 00
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
......++++.++++|+|++++|...+.+ +....+++ +.++|.+.-|
T Consensus 202 ---------------------------~~~~~~~l~~~l~~aDvVi~~~p~~~i~~---~~~~~mk~---g~~lin~a~g 248 (300)
T 2rir_A 202 ---------------------------VPFHTDELKEHVKDIDICINTIPSMILNQ---TVLSSMTP---KTLILDLASR 248 (300)
T ss_dssp ---------------------------EEEEGGGHHHHSTTCSEEEECCSSCCBCH---HHHTTSCT---TCEEEECSST
T ss_pred ---------------------------eEEchhhHHHHhhCCCEEEECCChhhhCH---HHHHhCCC---CCEEEEEeCC
Confidence 01112467788899999999999854322 22234555 6788877654
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00017 Score=72.16 Aligned_cols=38 Identities=11% Similarity=0.287 Sum_probs=31.4
Q ss_pred CCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++|||+|+| +|.+|.+++..|+.. |. .++|.+++++++
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~-g~---~~ev~l~Di~~~ 45 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMN-PL---VSVLHLYDVVNA 45 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHC-TT---EEEEEEEESSSH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhC-CC---CCEEEEEeCCCc
Confidence 458999999 799999999999877 52 168999998875
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.60 E-value=5.5e-05 Score=77.54 Aligned_cols=93 Identities=23% Similarity=0.249 Sum_probs=65.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|.||..+|..+... | .+|..|++..+..+ .
T Consensus 118 ~gktvGIIGlG~IG~~vA~~l~a~-G-----~~V~~~d~~~~~~~----------------------------~------ 157 (381)
T 3oet_A 118 RDRTIGIVGVGNVGSRLQTRLEAL-G-----IRTLLCDPPRAARG----------------------------D------ 157 (381)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECHHHHHTT----------------------------C------
T ss_pred CCCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEECCChHHhc----------------------------c------
Confidence 347999999999999999999887 8 89999987532100 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-h----HHHHH-HHHHHHhhccCCCCEEEE
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-E----TKEVF-EEISRYWKERITVPVIIS 195 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~----~~~vl-~~i~~~l~~~~~~~iIIs 195 (461)
.. ...++++++++||+|++++|.. . ++.++ ++....+++ ++++|.
T Consensus 158 -------------------------~~-~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~---gailIN 208 (381)
T 3oet_A 158 -------------------------EG-DFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKP---GAILIN 208 (381)
T ss_dssp -------------------------CS-CBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCT---TEEEEE
T ss_pred -------------------------Cc-ccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCC---CcEEEE
Confidence 01 1246888899999999999943 2 33333 233444565 688898
Q ss_pred EeecCccc
Q 012547 196 LAKGVEAE 203 (461)
Q Consensus 196 ~tkGi~~~ 203 (461)
++.|=..+
T Consensus 209 ~aRG~vvd 216 (381)
T 3oet_A 209 ACRGPVVD 216 (381)
T ss_dssp CSCGGGBC
T ss_pred CCCCcccC
Confidence 88775443
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.60 E-value=9.2e-05 Score=65.22 Aligned_cols=99 Identities=18% Similarity=0.157 Sum_probs=68.0
Q ss_pred HHHHHhhcCCCCCCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHH
Q 012547 30 DELRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLR 105 (461)
Q Consensus 30 ~~~~~~~~~~~~~~mkI~IIGa----GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~ 105 (461)
+++++++ .++.+|+|||+ |.+|..++..|.+. | ++ +|..++.+...
T Consensus 4 ~~l~~ll----~~p~~vaVvGas~~~g~~G~~~~~~l~~~-G-----~~--v~~vnp~~~~~------------------ 53 (140)
T 1iuk_A 4 QELRAYL----SQAKTIAVLGAHKDPSRPAHYVPRYLREQ-G-----YR--VLPVNPRFQGE------------------ 53 (140)
T ss_dssp HHHHHHH----HHCCEEEEETCCSSTTSHHHHHHHHHHHT-T-----CE--EEEECGGGTTS------------------
T ss_pred HHHHHHH----cCCCEEEEECCCCCCCChHHHHHHHHHHC-C-----CE--EEEeCCCcccC------------------
Confidence 4577777 23558999999 89999999999988 8 65 77777642110
Q ss_pred hhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhh
Q 012547 106 RLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185 (461)
Q Consensus 106 ~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~ 185 (461)
.+. ++.+..+++++....|++++++|+....++++++... .
T Consensus 54 -------~i~-------------------------------G~~~~~sl~el~~~vDlavi~vp~~~~~~v~~~~~~~-g 94 (140)
T 1iuk_A 54 -------ELF-------------------------------GEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLAL-R 94 (140)
T ss_dssp -------EET-------------------------------TEECBSSGGGCCSCCSEEEECSCHHHHTTTHHHHHHH-C
T ss_pred -------cCC-------------------------------CEEecCCHHHCCCCCCEEEEEeCHHHHHHHHHHHHHc-C
Confidence 010 2344455666556789999999999999999887753 2
Q ss_pred ccCCCCEEEEEeecCcc
Q 012547 186 ERITVPVIISLAKGVEA 202 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~~ 202 (461)
- .. +.++.|+..
T Consensus 95 i---~~--i~~~~g~~~ 106 (140)
T 1iuk_A 95 P---GL--VWLQSGIRH 106 (140)
T ss_dssp C---SC--EEECTTCCC
T ss_pred C---CE--EEEcCCcCH
Confidence 1 23 345667653
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00024 Score=62.55 Aligned_cols=105 Identities=7% Similarity=0.018 Sum_probs=65.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc-hhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG-RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~-~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
++|.|+|+|.+|..++..|.+. | ++|++++++. +.++.+.. ....+ ...+ .+
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~-g-----~~V~vid~~~~~~~~~~~~-----~~~~~-------------~~~i---~g 56 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQR-G-----QNVTVISNLPEDDIKQLEQ-----RLGDN-------------ADVI---PG 56 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCCHHHHHHHHH-----HHCTT-------------CEEE---ES
T ss_pred CcEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECCChHHHHHHHH-----hhcCC-------------CeEE---Ec
Confidence 5799999999999999999998 8 9999999974 43332110 00000 0000 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHH-hcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~a-v~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
| ..-...+.++ +.++|+||++++.+.....+....+.+.+ ...++..+++-.
T Consensus 57 d------------------------~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~---~~~ii~~~~~~~ 109 (153)
T 1id1_A 57 D------------------------SNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSS---DVKTVLAVSDSK 109 (153)
T ss_dssp C------------------------TTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTS---SSCEEEECSSGG
T ss_pred C------------------------CCCHHHHHHcChhhCCEEEEecCChHHHHHHHHHHHHHCC---CCEEEEEECCHH
Confidence 1 0001123344 78999999999998777666666655543 345666665544
Q ss_pred c
Q 012547 202 A 202 (461)
Q Consensus 202 ~ 202 (461)
.
T Consensus 110 ~ 110 (153)
T 1id1_A 110 N 110 (153)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00024 Score=70.37 Aligned_cols=93 Identities=15% Similarity=0.084 Sum_probs=61.6
Q ss_pred ceEEEECccHHHHHH-HHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 44 LRIVGVGAGAWGSVF-TAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 44 mkI~IIGaGamG~al-A~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
|||+|||+|.||..+ +..|.+. + .++ .+++++++.++.+.+ . + .
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~-~-----~~~vav~d~~~~~~~~~~~--------~-------------~-g------ 46 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRAT-G-----GEVVSMMSTSAERGAAYAT--------E-------------N-G------ 46 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHT-T-----CEEEEEECSCHHHHHHHHH--------H-------------T-T------
T ss_pred CeEEEEcccHHHHHhhhHHhhcC-C-----CeEEEEECCCHHHHHHHHH--------H-------------c-C------
Confidence 689999999999998 7777765 5 665 488998865543110 0 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.....+|+++++. ++|+|++|+|+....+++.... .. +..|+ +-|.
T Consensus 47 -------------------------~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al---~~---Gk~v~-~ekP 94 (332)
T 2glx_A 47 -------------------------IGKSVTSVEELVGDPDVDAVYVSTTNELHREQTLAAI---RA---GKHVL-CEKP 94 (332)
T ss_dssp -------------------------CSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHH---HT---TCEEE-ECSS
T ss_pred -------------------------CCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHHHHH---HC---CCeEE-EeCC
Confidence 0023467777775 5899999999998877776543 33 44444 5665
Q ss_pred Ccc
Q 012547 200 VEA 202 (461)
Q Consensus 200 i~~ 202 (461)
+..
T Consensus 95 ~~~ 97 (332)
T 2glx_A 95 LAM 97 (332)
T ss_dssp SCS
T ss_pred CcC
Confidence 543
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.57 E-value=3.9e-05 Score=78.67 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=65.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
-..++|+|||.|.||..+|..|... | .+|..|+++.+..+ .
T Consensus 114 l~g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~---------------------------~------ 154 (380)
T 2o4c_A 114 LAERTYGVVGAGQVGGRLVEVLRGL-G-----WKVLVCDPPRQARE---------------------------P------ 154 (380)
T ss_dssp GGGCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECHHHHHHS---------------------------T------
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHC-C-----CEEEEEcCChhhhc---------------------------c------
Confidence 3447999999999999999999877 8 89999987643100 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh-----HHHHH-HHHHHHhhccCCCCEEE
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVII 194 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~-----~~~vl-~~i~~~l~~~~~~~iII 194 (461)
... ..++++++++||+|++++|... ++.++ ++..+.+++ ++++|
T Consensus 155 --------------------------g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~---gailI 204 (380)
T 2o4c_A 155 --------------------------DGE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRP---GTWLV 204 (380)
T ss_dssp --------------------------TSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCT---TEEEE
T ss_pred --------------------------Ccc-cCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCC---CcEEE
Confidence 001 1467788889999999999543 44444 344455666 68888
Q ss_pred EEeecCc
Q 012547 195 SLAKGVE 201 (461)
Q Consensus 195 s~tkGi~ 201 (461)
.++.|=.
T Consensus 205 N~sRG~v 211 (380)
T 2o4c_A 205 NASRGAV 211 (380)
T ss_dssp ECSCGGG
T ss_pred ECCCCcc
Confidence 8887743
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00023 Score=70.91 Aligned_cols=97 Identities=16% Similarity=0.101 Sum_probs=64.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++||+|||+|.||..++..+... +. .+.+ |.+++|++++++.+.++ |
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~-~~--~~~~l~av~d~~~~~a~~~a~~---------------------~-------- 49 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTL-PR--SEHQVVAVAARDLSRAKEFAQK---------------------H-------- 49 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTS-CT--TTEEEEEEECSSHHHHHHHHHH---------------------H--------
T ss_pred ccEEEEECchHHHHHHHHHHHhC-CC--CCeEEEEEEcCCHHHHHHHHHH---------------------c--------
Confidence 47999999999999999888754 20 0123 55788887665432110 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
++ .+.+|+++.+. +.|+|++|+|.....+++.+.. .. +.. |.+-|
T Consensus 50 -------------------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al---~~---Gkh-Vl~EK 97 (334)
T 3ohs_X 50 -------------------------DIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCL---AA---GKA-VLCEK 97 (334)
T ss_dssp -------------------------TCSCEESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHH---HT---TCE-EEEES
T ss_pred -------------------------CCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHH---hc---CCE-EEEEC
Confidence 11 34578888776 5899999999998877776654 33 333 44777
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
-+...
T Consensus 98 P~a~~ 102 (334)
T 3ohs_X 98 PMGVN 102 (334)
T ss_dssp SSSSS
T ss_pred CCCCC
Confidence 76554
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00032 Score=70.57 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=65.3
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
.+++||+|||+|.||..++..|... . +.++ .+++++++.++.+.+ . + .
T Consensus 4 ~~~~~vgiiG~G~ig~~~~~~l~~~-~----~~~lv~v~d~~~~~~~~~a~--------~-------------~-~---- 52 (362)
T 1ydw_A 4 ETQIRIGVMGCADIARKVSRAIHLA-P----NATISGVASRSLEKAKAFAT--------A-------------N-N---- 52 (362)
T ss_dssp --CEEEEEESCCTTHHHHHHHHHHC-T----TEEEEEEECSSHHHHHHHHH--------H-------------T-T----
T ss_pred CCceEEEEECchHHHHHHHHHHhhC-C----CcEEEEEEcCCHHHHHHHHH--------H-------------h-C----
Confidence 3568999999999999999988865 2 1554 578888765443110 0 0 0
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
++ ......+|+++++. ++|+|++|+|+....+++.... .. +..|+ +-
T Consensus 53 ------~~------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~a---Gk~V~-~E 101 (362)
T 1ydw_A 53 ------YP------------------ESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAA---EK---GKHIL-LE 101 (362)
T ss_dssp ------CC------------------TTCEEESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHH---TT---TCEEE-EC
T ss_pred ------CC------------------CCCeeeCCHHHHhcCCCCCEEEEcCChHHHHHHHHHHH---HC---CCeEE-Ee
Confidence 00 02345678888775 5899999999998887776543 33 44444 56
Q ss_pred ecCcc
Q 012547 198 KGVEA 202 (461)
Q Consensus 198 kGi~~ 202 (461)
|.+..
T Consensus 102 KP~a~ 106 (362)
T 1ydw_A 102 KPVAM 106 (362)
T ss_dssp SSCSS
T ss_pred cCCcC
Confidence 75544
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00028 Score=69.05 Aligned_cols=148 Identities=12% Similarity=0.094 Sum_probs=89.0
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+|||+|+| +|.||..++..+....+ .++. +++|+.....- . ....+.+.
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~-----~eLv~~~d~~~~~~~G-------------~--------d~gel~g~--- 57 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPD-----ATLVGALDRTGSPQLG-------------Q--------DAGAFLGK--- 57 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTT-----EEEEEEBCCTTCTTTT-------------S--------BTTTTTTC---
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEEecCccccc-------------c--------cHHHHhCC---
Confidence 58999999 79999999999887622 5544 35665421100 0 00000000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
..++.+++|+++++.++|+||-++++....+.++.... . +..+|+.+.|+
T Consensus 58 ------------------------~~gv~v~~dl~~ll~~~DVVIDfT~p~a~~~~~~~al~---~---G~~vVigTTG~ 107 (272)
T 4f3y_A 58 ------------------------QTGVALTDDIERVCAEADYLIDFTLPEGTLVHLDAALR---H---DVKLVIGTTGF 107 (272)
T ss_dssp ------------------------CCSCBCBCCHHHHHHHCSEEEECSCHHHHHHHHHHHHH---H---TCEEEECCCCC
T ss_pred ------------------------CCCceecCCHHHHhcCCCEEEEcCCHHHHHHHHHHHHH---c---CCCEEEECCCC
Confidence 01355678999988899999999998887776666543 3 45677778888
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEe
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (461)
+.+. -+.+.+... ...++..|||..-+.-- .+.++.+.+.|. +++.+.+
T Consensus 108 s~~~---------~~~L~~aa~----~~~vv~a~N~s~Gv~l~----------~~~~~~aa~~l~-~~~diei 156 (272)
T 4f3y_A 108 SEPQ---------KAQLRAAGE----KIALVFSANMSVGVNVT----------MKLLEFAAKQFA-QGYDIEI 156 (272)
T ss_dssp CHHH---------HHHHHHHTT----TSEEEECSCCCHHHHHH----------HHHHHHHHHHTS-SSCEEEE
T ss_pred CHHH---------HHHHHHHhc----cCCEEEECCCCHHHHHH----------HHHHHHHHHhcC-cCCCEEE
Confidence 6541 133445432 23568888885422110 234556667775 3455543
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00013 Score=72.38 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=30.9
Q ss_pred CceEEEECccHHHH-HHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIGaGamG~-alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
++||+|||+|.||. +++..|.+..+ .+|.++++++++++.
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~-----~~l~v~d~~~~~~~~ 42 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPD-----IELVLCTRNPKVLGT 42 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTT-----EEEEEECSCHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCC-----ceEEEEeCCHHHHHH
Confidence 47999999999998 58888865413 677799998876543
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00032 Score=70.21 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=69.8
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecC----chhhhhhhhhhHHHHHhhhhhhHHhhhhccccc
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRP----GRSVDRATAEHLFEVINSREDVLRRLIRRCAYL 114 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~--~~~~V~l~~r~----~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l 114 (461)
++|||+|+|+ |.+|++++..|+.. |++. ...+|.+++++ +++++.. ..+ +... ..
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~-~~~~~~~~~ev~l~Di~~~~~~~~~~g~----~~d-l~~~------------~~ 65 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANG-DMLGKDQPVILQLLEIPNEKAQKALQGV----MME-IDDC------------AF 65 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTT-TTTCTTCCEEEEEECCSCHHHHHHHHHH----HHH-HHTT------------TC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhC-CCcCCCCCCEEEEEcCCCccccccchhh----HHH-Hhhh------------cc
Confidence 4689999998 99999999999987 6321 01389999998 4333210 000 1100 00
Q ss_pred chhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC--c--------------hhHHHHHH
Q 012547 115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--S--------------TETKEVFE 178 (461)
Q Consensus 115 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp--s--------------~~~~~vl~ 178 (461)
+. ...+..++|+.+++++||+||++.. . ..++++++
T Consensus 66 ~~----------------------------~~~i~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~ 117 (329)
T 1b8p_A 66 PL----------------------------LAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGK 117 (329)
T ss_dssp TT----------------------------EEEEEEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cc----------------------------cCcEEEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 00 0146677899999999999999763 1 12555666
Q ss_pred HHHHHhhccCCCCEEEEEeecC
Q 012547 179 EISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 179 ~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+..+..+ +..+|.++|-+
T Consensus 118 ~i~~~~~p---~a~ii~~SNPv 136 (329)
T 1b8p_A 118 AIDAVASR---NIKVLVVGNPA 136 (329)
T ss_dssp HHHHHSCT---TCEEEECSSSH
T ss_pred HHHHhcCC---CeEEEEccCch
Confidence 66665423 56788788755
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00016 Score=69.97 Aligned_cols=91 Identities=19% Similarity=0.130 Sum_probs=62.5
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
+|+|||+|.||.+++..|++. | . +|++++|+.++++++. ..
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~-G-----~~~I~v~nR~~~ka~~la-------------------------~~------- 151 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQM-G-----VKDIWVVNRTIERAKALD-------------------------FP------- 151 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCCEEEEESCHHHHHTCC-------------------------SS-------
T ss_pred eEEEECcHHHHHHHHHHHHHc-C-----CCEEEEEeCCHHHHHHHH-------------------------HH-------
Confidence 899999999999999999998 8 5 8999999987654311 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHH-HHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEI-SRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i-~~~l~~~~~~~iIIs~tkG 199 (461)
+ ......++.+++.++|+||.|||.....+. ..+ ...+++ +++++++.-+
T Consensus 152 --~--------------------~~~~~~~~~~~~~~aDiVInatp~gm~p~~-~~i~~~~l~~---~~~V~Divy~ 202 (253)
T 3u62_A 152 --V--------------------KIFSLDQLDEVVKKAKSLFNTTSVGMKGEE-LPVSDDSLKN---LSLVYDVIYF 202 (253)
T ss_dssp --C--------------------EEEEGGGHHHHHHTCSEEEECSSTTTTSCC-CSCCHHHHTT---CSEEEECSSS
T ss_pred --c--------------------ccCCHHHHHhhhcCCCEEEECCCCCCCCCC-CCCCHHHhCc---CCEEEEeeCC
Confidence 0 111235566778899999999985321110 011 123454 6788998877
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00062 Score=68.83 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=71.0
Q ss_pred ccccchhHHhhHHHHHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCC--eeEEEEecCchhhhhhhhhhHHH
Q 012547 19 HHTNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--VLIRIWRRPGRSVDRATAEHLFE 95 (461)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~--~~V~l~~r~~~~~~~~~~~~l~~ 95 (461)
||.-|.++.+ -++..+-...||+|+|| |.+|.+++..|+.. .++.++ .++.|+|.++... .. +++.-
T Consensus 6 ~~~~~~~~~~------~~~~~s~~~vKVaViGAaG~IG~~la~~la~~-~l~~~~~~~eL~L~Di~~~~~-~~--~Gva~ 75 (345)
T 4h7p_A 6 HHHMGTLEAQ------TQGPGSMSAVKVAVTGAAGQIGYALVPLIARG-ALLGPTTPVELRLLDIEPALK-AL--AGVEA 75 (345)
T ss_dssp ----------------------CCCEEEEEESTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGHH-HH--HHHHH
T ss_pred cccccccccc------ccCCCCCCCCEEEEECcCcHHHHHHHHHHHhc-cccCCCCccEEEEECCCCccc-cc--hhhhh
Confidence 5556777765 23334434469999997 99999999999987 443221 3789999876321 11 11110
Q ss_pred HHhhhhhhHHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cc---
Q 012547 96 VINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--- 170 (461)
Q Consensus 96 ~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps--- 170 (461)
-++.. -.+. ...+..++|..+++++||+||++- |.
T Consensus 76 DL~~~------------~~~~----------------------------~~~~~~~~~~~~a~~~advVvi~aG~prkpG 115 (345)
T 4h7p_A 76 ELEDC------------AFPL----------------------------LDKVVVTADPRVAFDGVAIAIMCGAFPRKAG 115 (345)
T ss_dssp HHHHT------------TCTT----------------------------EEEEEEESCHHHHTTTCSEEEECCCCCCCTT
T ss_pred hhhhc------------CccC----------------------------CCcEEEcCChHHHhCCCCEEEECCCCCCCCC
Confidence 01100 0110 014667889999999999999965 32
Q ss_pred -----------hhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 171 -----------TETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 171 -----------~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
..++++.+.|.++..+ +..|+.++|.+.
T Consensus 116 mtR~DLl~~Na~I~~~~~~~i~~~a~~---~~~vlvvsNPvd 154 (345)
T 4h7p_A 116 MERKDLLEMNARIFKEQGEAIAAVAAS---DCRVVVVGNPAN 154 (345)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSCT---TCEEEECSSSHH
T ss_pred CCHHHHHHHhHHHHHHHHHHHHhhccC---ceEEEEeCCCcc
Confidence 1355555666666544 567777887754
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00031 Score=69.37 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=49.4
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (461)
.+|-+..+|-...--+.-|+.. +..+...++|+|||+|.+|.+++..|++. | . +|++|+|+.++++.
T Consensus 113 ~~g~l~g~nTd~~G~~~~l~~~-~~~~l~~~~vlVlGaGg~g~aia~~L~~~-G-----~~~V~v~nR~~~ka~~ 180 (297)
T 2egg_A 113 NDGRLVGYNTDGLGYVQALEEE-MNITLDGKRILVIGAGGGARGIYFSLLST-A-----AERIDMANRTVEKAER 180 (297)
T ss_dssp ETTEEEEECCHHHHHHHHHHHH-TTCCCTTCEEEEECCSHHHHHHHHHHHTT-T-----CSEEEEECSSHHHHHH
T ss_pred cCCeEeeccCCHHHHHHHHHHh-CCCCCCCCEEEEECcHHHHHHHHHHHHHC-C-----CCEEEEEeCCHHHHHH
Confidence 5666666666666555556543 21123447899999999999999999988 8 6 99999999876654
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00048 Score=69.47 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=64.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++||+|||+|.||...+..+.+. . +.+|. +++++++.++.. .. +
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~-~----~~~l~av~d~~~~~~~~a---------~~-------------~-------- 49 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAA-D----NLEVHGVFDILAEKREAA---------AQ-------------K-------- 49 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS-T----TEEEEEEECSSHHHHHHH---------HT-------------T--------
T ss_pred cCcEEEECcCHHHHHHHHHHHhC-C----CcEEEEEEcCCHHHHHHH---------Hh-------------c--------
Confidence 57999999999999999888765 2 25654 678887643310 00 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
++.+.+|+++.+. +.|+|++|+|+....+++..... . +..| .+-|.
T Consensus 50 -------------------------g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---a---GkhV-l~EKP 97 (359)
T 3e18_A 50 -------------------------GLKIYESYEAVLADEKVDAVLIATPNDSHKELAISALE---A---GKHV-VCEKP 97 (359)
T ss_dssp -------------------------TCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---T---TCEE-EEESS
T ss_pred -------------------------CCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---C---CCCE-EeeCC
Confidence 2234577888776 78999999999888777765543 3 3444 47777
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
+...
T Consensus 98 ~a~~ 101 (359)
T 3e18_A 98 VTMT 101 (359)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 6553
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0007 Score=67.56 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=64.7
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGaGamG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
.|+||+|||+|.||.. ++..+... . +.+|. ++++++++++++.++ | .
T Consensus 22 ~mirigiIG~G~ig~~~~~~~~~~~-~----~~~lvav~d~~~~~a~~~a~~---------------------~-g---- 70 (350)
T 4had_A 22 SMLRFGIISTAKIGRDNVVPAIQDA-E----NCVVTAIASRDLTRAREMADR---------------------F-S---- 70 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHC-S----SEEEEEEECSSHHHHHHHHHH---------------------H-T----
T ss_pred CccEEEEEcChHHHHHHHHHHHHhC-C----CeEEEEEECCCHHHHHHHHHH---------------------c-C----
Confidence 4589999999999975 45566654 2 25554 788888766542110 0 0
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
-.++.+|+++.+. +.|+|++|+|+....+++..... . +.. |.|-
T Consensus 71 ---------------------------~~~~y~d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~---a---Gkh-Vl~E 116 (350)
T 4had_A 71 ---------------------------VPHAFGSYEEMLASDVIDAVYIPLPTSQHIEWSIKAAD---A---GKH-VVCE 116 (350)
T ss_dssp ---------------------------CSEEESSHHHHHHCSSCSEEEECSCGGGHHHHHHHHHH---T---TCE-EEEC
T ss_pred ---------------------------CCeeeCCHHHHhcCCCCCEEEEeCCCchhHHHHHHHHh---c---CCE-EEEe
Confidence 0145678888774 47999999999988887766543 2 333 4578
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
|-+...
T Consensus 117 KPla~~ 122 (350)
T 4had_A 117 KPLALK 122 (350)
T ss_dssp SCCCSS
T ss_pred CCcccc
Confidence 887654
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00053 Score=69.18 Aligned_cols=96 Identities=16% Similarity=0.068 Sum_probs=65.0
Q ss_pred CceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++||+|||+|.||.. ++..|.+..+ .+|. +++++++.++.+.+ .++
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~a~----------------------~~~----- 52 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQD-----IRIVAACDSDLERARRVHR----------------------FIS----- 52 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTT-----EEEEEEECSSHHHHGGGGG----------------------TSC-----
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCC-----cEEEEEEcCCHHHHHHHHH----------------------hcC-----
Confidence 479999999999984 7888876412 6655 88998876543110 000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
...+.+|+++.+.+ .|+|++|+|+....+++.... .. +.. |.+-|
T Consensus 53 --------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al---~a---Gkh-Vl~EK 99 (359)
T 3m2t_A 53 --------------------------DIPVLDNVPAMLNQVPLDAVVMAGPPQLHFEMGLLAM---SK---GVN-VFVEK 99 (359)
T ss_dssp --------------------------SCCEESSHHHHHHHSCCSEEEECSCHHHHHHHHHHHH---HT---TCE-EEECS
T ss_pred --------------------------CCcccCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH---HC---CCe-EEEEC
Confidence 23456788888764 599999999998887776654 33 334 44677
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
.+...
T Consensus 100 Pla~~ 104 (359)
T 3m2t_A 100 PPCAT 104 (359)
T ss_dssp CSCSS
T ss_pred CCcCC
Confidence 76543
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00053 Score=69.81 Aligned_cols=94 Identities=19% Similarity=0.154 Sum_probs=63.7
Q ss_pred CceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaG-amG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++||+|||+| .||..++..+... . +.++ .+++++++.++.+.++ |
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~a~~---------------------~------- 48 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHH-P----DAQIVAACDPNEDVRERFGKE---------------------Y------- 48 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHC-T----TEEEEEEECSCHHHHHHHHHH---------------------H-------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-C----CeEEEEEEeCCHHHHHHHHHH---------------------c-------
Confidence 5899999999 9999999988865 2 1454 4788887655431100 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
++...+|+++.+. +.|+|++|+|+....+++..... . +..| .+-|
T Consensus 49 --------------------------g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~---a---Gk~V-l~EK 95 (387)
T 3moi_A 49 --------------------------GIPVFATLAEMMQHVQMDAVYIASPHQFHCEHVVQASE---Q---GLHI-IVEK 95 (387)
T ss_dssp --------------------------TCCEESSHHHHHHHSCCSEEEECSCGGGHHHHHHHHHH---T---TCEE-EECS
T ss_pred --------------------------CCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHHHHHHH---C---CCce-eeeC
Confidence 1234578888776 48999999999888777665543 3 3333 4667
Q ss_pred cCcc
Q 012547 199 GVEA 202 (461)
Q Consensus 199 Gi~~ 202 (461)
-+..
T Consensus 96 P~a~ 99 (387)
T 3moi_A 96 PLTL 99 (387)
T ss_dssp CCCS
T ss_pred CccC
Confidence 6654
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00091 Score=67.56 Aligned_cols=94 Identities=18% Similarity=0.276 Sum_probs=62.3
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGaGamG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+++||+|||+|.||.. .+..+....+ .+|. +++++++++.+ . .+
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~------------------------~-~~---- 51 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVPG-----LNLAFVASRDEEKVKR------------------------D-LP---- 51 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTSTT-----EEEEEEECSCHHHHHH------------------------H-CT----
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCC-----eEEEEEEcCCHHHHHh------------------------h-CC----
Confidence 5689999999999986 5666654312 5654 77887653321 0 01
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
...+.+|+++.+. +.|+|++|+|+....+++.... .. +..| .+-
T Consensus 52 ---------------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~~al---~a---Gk~V-l~E 97 (364)
T 3e82_A 52 ---------------------------DVTVIASPEAAVQHPDVDLVVIASPNATHAPLARLAL---NA---GKHV-VVD 97 (364)
T ss_dssp ---------------------------TSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHHHHH---HT---TCEE-EEC
T ss_pred ---------------------------CCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHHHHH---HC---CCcE-EEe
Confidence 2356688888877 6899999999988877766543 33 3444 467
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
|-+...
T Consensus 98 KPla~~ 103 (364)
T 3e82_A 98 KPFTLD 103 (364)
T ss_dssp SCSCSS
T ss_pred CCCcCC
Confidence 766543
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00043 Score=65.28 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=65.2
Q ss_pred hHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhh
Q 012547 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDV 103 (461)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (461)
+++-++++++.+|.. +.+||+|||+|.+|.+++..+....| .+ |-++|.++++...
T Consensus 64 v~~L~~~~~~~lg~~--~~~rV~IIGaG~~G~~la~~~~~~~g-----~~iVg~~D~dp~k~g~---------------- 120 (211)
T 2dt5_A 64 VPVLKRELRHILGLN--RKWGLCIVGMGRLGSALADYPGFGES-----FELRGFFDVDPEKVGR---------------- 120 (211)
T ss_dssp HHHHHHHHHHHHTTT--SCEEEEEECCSHHHHHHHHCSCCCSS-----EEEEEEEESCTTTTTC----------------
T ss_pred hHHHHHHHHHHhCcC--CCCEEEEECccHHHHHHHHhHhhcCC-----cEEEEEEeCCHHHHhh----------------
Confidence 455567778888753 35799999999999999986322103 44 5567777653321
Q ss_pred HHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc-CCCEEEEcCCchhHHHHHHHHHH
Q 012547 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~-~aDiIIiaVps~~~~~vl~~i~~ 182 (461)
...++ ++...+|+++.++ +.|.|++|+|+....++++.+..
T Consensus 121 ---------~i~gv-----------------------------~V~~~~dl~ell~~~ID~ViIA~Ps~~~~ei~~~l~~ 162 (211)
T 2dt5_A 121 ---------PVRGG-----------------------------VIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVA 162 (211)
T ss_dssp ---------EETTE-----------------------------EEEEGGGHHHHSTTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred ---------hhcCC-----------------------------eeecHHhHHHHHHcCCCEEEEeCCchhHHHHHHHHHH
Confidence 11110 2334577877765 58999999999988888877754
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00095 Score=66.03 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=31.0
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEec--Cchhh
Q 012547 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRR--PGRSV 85 (461)
Q Consensus 44 mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r--~~~~~ 85 (461)
|||+|+| +|.+|++++..|+.. |.. .++.++++ +++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~-~~~---~el~L~Di~~~~~~~ 41 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALR-DIA---DEVVFVDIPDKEDDT 41 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCC---SEEEEECCGGGHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CEEEEEcCCCChhhH
Confidence 7999999 999999999999887 621 37999998 65443
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0012 Score=64.97 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=67.2
Q ss_pred CCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 41 ~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
.+.+||+|+|+ |.||...+..+.+. | .+ .++..++..... . .
T Consensus 5 ~~~~rVaViG~sG~~G~~~~~~l~~~-g-----~~-~V~~V~p~~~g~------------------------~-~----- 47 (288)
T 2nu8_A 5 DKNTKVICQGFTGSQGTFHSEQAIAY-G-----TK-MVGGVTPGKGGT------------------------T-H----- 47 (288)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTTC------------------------E-E-----
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC-C-----Ce-EEEEeCCCcccc------------------------e-e-----
Confidence 45689999998 99999999999887 7 56 344544421100 0 0
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
.++.+..+++++.. ++|+++++||+....+++++.... . -..+|.++
T Consensus 48 --------------------------~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~~~ea~~~-G----i~~iVi~t 96 (288)
T 2nu8_A 48 --------------------------LGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDA-G----IKLIITIT 96 (288)
T ss_dssp --------------------------TTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHHHHHT-T----CSEEEECC
T ss_pred --------------------------CCeeccCCHHHHhhcCCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEEC
Confidence 03455677888777 899999999999999999887652 1 23456678
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
.|+..+
T Consensus 97 ~G~~~~ 102 (288)
T 2nu8_A 97 EGIPTL 102 (288)
T ss_dssp CCCCHH
T ss_pred CCCCHH
Confidence 788654
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00032 Score=69.99 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=60.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+|+|||+|.+|...+..|....+ ..+|.+|+|+ +++++.+ .+... + +
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~----~~~V~v~~r~--~a~~la~-----~l~~~------------~--g----- 169 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFA----LEAILVHDPY--ASPEILE-----RIGRR------------C--G----- 169 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSC----CCEEEEECTT--CCHHHHH-----HHHHH------------H--T-----
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCC----CcEEEEECCc--HHHHHHH-----HHHHh------------c--C-----
Confidence 45789999999999999999886412 2689999999 4443211 11100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEE
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~ 196 (461)
..+... |+++++.+||+||.|||+.. .++. .+++++ +++|+.+
T Consensus 170 ------------------------~~~~~~-~~~eav~~aDIVi~aT~s~~--pvl~--~~~l~~---G~~V~~v 212 (313)
T 3hdj_A 170 ------------------------VPARMA-APADIAAQADIVVTATRSTT--PLFA--GQALRA---GAFVGAI 212 (313)
T ss_dssp ------------------------SCEEEC-CHHHHHHHCSEEEECCCCSS--CSSC--GGGCCT---TCEEEEC
T ss_pred ------------------------CeEEEe-CHHHHHhhCCEEEEccCCCC--cccC--HHHcCC---CcEEEEC
Confidence 024455 89999999999999999852 2222 234565 5655543
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0012 Score=65.99 Aligned_cols=101 Identities=16% Similarity=0.093 Sum_probs=66.4
Q ss_pred CCCCCceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccch
Q 012547 39 AEGDPLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (461)
Q Consensus 39 ~~~~~mkI~IIGaG-amG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~ 116 (461)
-..+++||+|||+| .||...+..+.+. + ++.++ .+++++++.++++.++ | .
T Consensus 14 ~~~~~irvgiIG~G~~~g~~~~~~l~~~-~---~~~~lvav~d~~~~~~~~~a~~---------------------~-~- 66 (340)
T 1zh8_A 14 KPLRKIRLGIVGCGIAARELHLPALKNL-S---HLFEITAVTSRTRSHAEEFAKM---------------------V-G- 66 (340)
T ss_dssp --CCCEEEEEECCSHHHHHTHHHHHHTT-T---TTEEEEEEECSSHHHHHHHHHH---------------------H-S-
T ss_pred CCCCceeEEEEecCHHHHHHHHHHHHhC-C---CceEEEEEEcCCHHHHHHHHHH---------------------h-C-
Confidence 34467899999999 8999998888754 2 01454 5788887765431110 0 0
Q ss_pred hhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEE
Q 012547 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (461)
Q Consensus 117 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iII 194 (461)
...+.+|+++.+. +.|+|++|+|+....+++.... .. +.. |
T Consensus 67 ------------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al---~a---Gkh-V 109 (340)
T 1zh8_A 67 ------------------------------NPAVFDSYEELLESGLVDAVDLTLPVELNLPFIEKAL---RK---GVH-V 109 (340)
T ss_dssp ------------------------------SCEEESCHHHHHHSSCCSEEEECCCGGGHHHHHHHHH---HT---TCE-E
T ss_pred ------------------------------CCcccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHH---HC---CCc-E
Confidence 1245678888775 5899999999988877776544 33 343 3
Q ss_pred EEeecCccc
Q 012547 195 SLAKGVEAE 203 (461)
Q Consensus 195 s~tkGi~~~ 203 (461)
.+-|-+...
T Consensus 110 l~EKPla~~ 118 (340)
T 1zh8_A 110 ICEKPISTD 118 (340)
T ss_dssp EEESSSSSS
T ss_pred EEeCCCCCC
Confidence 467776543
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00057 Score=70.89 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=63.9
Q ss_pred CCceEEEECccHHHH-HHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGaGamG~-alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+++||+|||+|.||. .++..|.+. + +.++ .+++++++.++.+.+ ..+ .+.
T Consensus 82 ~~irigiIG~G~~g~~~~~~~l~~~-~----~~~lvav~d~~~~~~~~~a~--------~~g------------~~~--- 133 (433)
T 1h6d_A 82 RRFGYAIVGLGKYALNQILPGFAGC-Q----HSRIEALVSGNAEKAKIVAA--------EYG------------VDP--- 133 (433)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTC-S----SEEEEEEECSCHHHHHHHHH--------HTT------------CCG---
T ss_pred CceEEEEECCcHHHHHHHHHHHhhC-C----CcEEEEEEcCCHHHHHHHHH--------HhC------------CCc---
Confidence 458999999999997 888888754 2 2554 588888765543111 000 000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
..+...+|+++.+. +.|+|++|+|+....+++.... .. +..|+ +-
T Consensus 134 --------------------------~~~~~~~~~~~ll~~~~vD~V~iatp~~~h~~~~~~al---~a---Gk~Vl-~E 180 (433)
T 1h6d_A 134 --------------------------RKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAF---KA---GKHVM-CE 180 (433)
T ss_dssp --------------------------GGEECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHHHH---HT---TCEEE-EC
T ss_pred --------------------------ccccccCCHHHHhcCCCCCEEEEcCCchhHHHHHHHHH---HC---CCcEE-Ec
Confidence 01334567777765 6899999999998887776653 33 34443 56
Q ss_pred ecCcc
Q 012547 198 KGVEA 202 (461)
Q Consensus 198 kGi~~ 202 (461)
|.+..
T Consensus 181 KPla~ 185 (433)
T 1h6d_A 181 KPMAT 185 (433)
T ss_dssp SSCCS
T ss_pred CCCCC
Confidence 65543
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00068 Score=67.80 Aligned_cols=95 Identities=12% Similarity=0.141 Sum_probs=61.5
Q ss_pred CceEEEECccHHHHHHHHH-H-HHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAM-L-QDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~-L-a~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
++||+|||+|.||..+... + ....+ .+|. +++++++..+. ...
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~-----~~l~av~d~~~~~~~~--------------------------~~~--- 47 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDS-----WHVAHIFRRHAKPEEQ--------------------------API--- 47 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTT-----EEEEEEECSSCCGGGG--------------------------SGG---
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCC-----eEEEEEEcCCHhHHHH--------------------------HHh---
Confidence 5799999999999864333 3 33213 6665 88888764321 000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
. ..+.+.+|+++.+.+ .|+|++|+|+....+++.... .. +..| .+-
T Consensus 48 ------~-------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~a---Gk~V-l~E 95 (345)
T 3f4l_A 48 ------Y-------------------SHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRAL---EA---GKNV-LVE 95 (345)
T ss_dssp ------G-------------------TTCEEESCTHHHHTCTTEEEEEECSCGGGHHHHHHHHH---HT---TCEE-EEC
T ss_pred ------c-------------------CCCceECCHHHHhcCCCCCEEEEcCChHHHHHHHHHHH---Hc---CCcE-EEe
Confidence 0 034566888888775 899999999988877766544 33 3444 467
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
|-+...
T Consensus 96 KP~a~~ 101 (345)
T 3f4l_A 96 KPFTPT 101 (345)
T ss_dssp SSSCSS
T ss_pred CCCCCC
Confidence 766543
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0006 Score=64.33 Aligned_cols=99 Identities=14% Similarity=0.239 Sum_probs=66.9
Q ss_pred hhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHH--HhcCCCCCCee-EEEEecCch-hhhhhhhhhHHHHHhh
Q 012547 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQ--DSYGYLRDKVL-IRIWRRPGR-SVDRATAEHLFEVINS 99 (461)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La--~~~G~~~~~~~-V~l~~r~~~-~~~~~~~~~l~~~i~~ 99 (461)
..++-+++++..+|.. +..+|+|+|+|+.|.+++..+. .. | .+ |-++|.+++ ....
T Consensus 67 ~V~~L~~~i~~~Lg~~--~~~~V~IvGaG~lG~aLa~~~~~~~~-g-----~~iVg~~D~dp~~kiG~------------ 126 (212)
T 3keo_A 67 DVKKLMNFFAEILNDH--STTNVMLVGCGNIGRALLHYRFHDRN-K-----MQISMAFDLDSNDLVGK------------ 126 (212)
T ss_dssp EHHHHHHHHHHHTTTT--SCEEEEEECCSHHHHHHTTCCCCTTS-S-----EEEEEEEECTTSTTTTC------------
T ss_pred EHHHHHHHHHHHhCCC--CCCEEEEECcCHHHHHHHHhhhcccC-C-----eEEEEEEeCCchhccCc------------
Confidence 4567778889988644 3468999999999999998742 23 3 44 446777764 3210
Q ss_pred hhhhHHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHH
Q 012547 100 REDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVF 177 (461)
Q Consensus 100 ~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl 177 (461)
....++ ++...+++++.++ +.|.+|+|+|+...++++
T Consensus 127 ------------~~i~Gv-----------------------------pV~~~~dL~~~v~~~~Id~vIIAvPs~~aq~v~ 165 (212)
T 3keo_A 127 ------------TTEDGI-----------------------------PVYGISTINDHLIDSDIETAILTVPSTEAQEVA 165 (212)
T ss_dssp ------------BCTTCC-----------------------------BEEEGGGHHHHC-CCSCCEEEECSCGGGHHHHH
T ss_pred ------------eeECCe-----------------------------EEeCHHHHHHHHHHcCCCEEEEecCchhHHHHH
Confidence 011111 2344567777765 489999999999888888
Q ss_pred HHHHHH
Q 012547 178 EEISRY 183 (461)
Q Consensus 178 ~~i~~~ 183 (461)
+.+...
T Consensus 166 d~lv~~ 171 (212)
T 3keo_A 166 DILVKA 171 (212)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887753
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0011 Score=65.94 Aligned_cols=94 Identities=11% Similarity=0.120 Sum_probs=62.8
Q ss_pred CceEEEECccHHHH-HHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~-alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++||+|||+|.+|. .++..|... + .+ |.++++++++++.+.++ | +
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~-~-----~~lvav~d~~~~~~~~~a~~---------------------~-~----- 50 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDA-G-----AELAGVFESDSDNRAKFTSL---------------------F-P----- 50 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHT-T-----CEEEEEECSCTTSCHHHHHH---------------------S-T-----
T ss_pred ccEEEEECCChHHHHHhhhhhcCC-C-----cEEEEEeCCCHHHHHHHHHh---------------------c-C-----
Confidence 58999999999996 577767655 5 66 46899998766532110 1 1
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
...+.+|+++.+. +.|+|++|+|+....+++.... .. +..|+ +-|
T Consensus 51 --------------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~a---GkhVl-~EK 97 (336)
T 2p2s_A 51 --------------------------SVPFAASAEQLITDASIDLIACAVIPCDRAELALRTL---DA---GKDFF-TAK 97 (336)
T ss_dssp --------------------------TCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHH---HT---TCEEE-ECS
T ss_pred --------------------------CCcccCCHHHHhhCCCCCEEEEeCChhhHHHHHHHHH---HC---CCcEE-EeC
Confidence 1234577888776 5899999999988877766543 33 34443 567
Q ss_pred cCcc
Q 012547 199 GVEA 202 (461)
Q Consensus 199 Gi~~ 202 (461)
-+..
T Consensus 98 P~a~ 101 (336)
T 2p2s_A 98 PPLT 101 (336)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 6554
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00055 Score=68.39 Aligned_cols=42 Identities=7% Similarity=0.107 Sum_probs=34.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+.++|+|||+|.+|..++..|....+ ..+|.+|+|+++++++
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~----~~~V~v~~r~~~~a~~ 165 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFD----IGEVKAYDVREKAAKK 165 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSC----CCEEEEECSSHHHHHH
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCC----ccEEEEECCCHHHHHH
Confidence 45799999999999999999887412 1689999999887664
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0016 Score=67.67 Aligned_cols=119 Identities=26% Similarity=0.380 Sum_probs=80.5
Q ss_pred hhHHhhHHHHH--hhcCCC-------CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHH
Q 012547 24 SLEERLDELRR--LMGKAE-------GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLF 94 (461)
Q Consensus 24 ~~~~~~~~~~~--~~~~~~-------~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~ 94 (461)
++.+.|++|+. .|...+ -+.++|+|||.|+-|.+=|..|.++ | .+|.+--|.....+.
T Consensus 9 ~~~~~~~~~~~c~~m~~~eF~~~~~~lkgK~IaVIGyGsQG~AqAlNLRDS-G-----v~V~Vglr~~s~~e~------- 75 (491)
T 3ulk_A 9 NLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDS-G-----LDISYALRKEAIAEK------- 75 (491)
T ss_dssp CHHHHHHHHTCCEECCGGGGTTTTGGGTTSEEEEESCSHHHHHHHHHHHHT-T-----CEEEEEECHHHHHTT-------
T ss_pred cHHHHHHHhccceeccHHHhcchhHHHcCCEEEEeCCChHhHHHHhHHHhc-C-----CcEEEEeCCCCcccc-------
Confidence 56677877743 232111 0127999999999999999999999 8 899887774321110
Q ss_pred HHHhhhhhhHHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHH
Q 012547 95 EVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETK 174 (461)
Q Consensus 95 ~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~ 174 (461)
.. .+-.. ..+ +..+ .+.++|++.||+|++-+|.....
T Consensus 76 -----~~----------S~~~A---------------~~~------------Gf~v-~~~~eA~~~ADvV~~L~PD~~q~ 112 (491)
T 3ulk_A 76 -----RA----------SWRKA---------------TEN------------GFKV-GTYEELIPQADLVINLTPDKQHS 112 (491)
T ss_dssp -----CH----------HHHHH---------------HHT------------TCEE-EEHHHHGGGCSEEEECSCGGGHH
T ss_pred -----cc----------hHHHH---------------HHC------------CCEe-cCHHHHHHhCCEEEEeCChhhHH
Confidence 00 00000 012 2333 34788999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 175 EVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 175 ~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
++.++|.|++++ ++.+ ..+-|+..
T Consensus 113 ~vy~~I~p~lk~---G~~L-~faHGFnI 136 (491)
T 3ulk_A 113 DVVRTVQPLMKD---GAAL-GYSHGFNI 136 (491)
T ss_dssp HHHHHHGGGSCT---TCEE-EESSCHHH
T ss_pred HHHHHHHhhCCC---CCEE-EecCcccc
Confidence 999999999998 5544 46667643
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0033 Score=62.65 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=29.7
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|||+||| +|.+|.+++..|+...+ + ..++.++++++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~-~--~~el~L~Di~~ 37 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLP-S--GSELSLYDIAP 37 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSC-T--TEEEEEECSST
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-C--CceEEEEecCC
Confidence 7999999 89999999999986411 1 16899999986
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.001 Score=65.73 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=27.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRS 84 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~-l~~r~~~~ 84 (461)
+++||+|||+|.||..++..+.+..+ .++. +++++++.
T Consensus 8 ~~irv~IIG~G~iG~~~~~~l~~~~~-----~elvav~d~~~~~ 46 (304)
T 3bio_A 8 KKIRAAIVGYGNIGRYALQALREAPD-----FEIAGIVRRNPAE 46 (304)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTT-----EEEEEEECC----
T ss_pred CCCEEEEECChHHHHHHHHHHhcCCC-----CEEEEEEcCCHHH
Confidence 35899999999999999999887513 6766 78888754
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0016 Score=65.29 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=62.6
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGaGamG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+++||+|||+|.||.. .+..+... . +.+|. +++++++++++ .+ +
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~~~~~-~----~~~l~av~d~~~~~~~~------------------------~~-~---- 51 (352)
T 3kux_A 6 DKIKVGLLGYGYASKTFHAPLIMGT-P----GLELAGVSSSDASKVHA------------------------DW-P---- 51 (352)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTS-T----TEEEEEEECSCHHHHHT------------------------TC-S----
T ss_pred CCceEEEECCCHHHHHHHHHHHhhC-C----CcEEEEEECCCHHHHHh------------------------hC-C----
Confidence 4689999999999986 66666654 2 15654 77887654321 01 1
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
...+.+|+++.+.+ .|+|++|+|+....+++.... .. +..| .+-
T Consensus 52 ---------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al---~a---GkhV-~~E 97 (352)
T 3kux_A 52 ---------------------------AIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQSAL---AA---GKHV-VVD 97 (352)
T ss_dssp ---------------------------SCCEESCHHHHHHCSSCCEEEECSCTTTHHHHHHHHH---HT---TCEE-EEC
T ss_pred ---------------------------CCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHHHH---HC---CCcE-EEE
Confidence 23456788888765 899999999988877766544 33 3444 467
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
|.+...
T Consensus 98 KPla~~ 103 (352)
T 3kux_A 98 KPFTVT 103 (352)
T ss_dssp SSCCSC
T ss_pred CCCcCC
Confidence 776543
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00034 Score=68.65 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=44.9
Q ss_pred CcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhh
Q 012547 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD 86 (461)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~ 86 (461)
+|-++-.|-.-.-=+.-|+..- .+...+++.|+|+|.+|.+++..|++. | . +|++++|+.++++
T Consensus 91 ~g~l~G~NTD~~G~~~~L~~~~--~~l~~k~vlvlGaGg~g~aia~~L~~~-G-----~~~v~v~~R~~~~a~ 155 (277)
T 3don_A 91 DGKWIGYNTDGIGYVNGLKQIY--EGIEDAYILILGAGGASKGIANELYKI-V-----RPTLTVANRTMSRFN 155 (277)
T ss_dssp TTEEEEECCHHHHHHHHHHHHS--TTGGGCCEEEECCSHHHHHHHHHHHTT-C-----CSCCEEECSCGGGGT
T ss_pred CCEEEEECChHHHHHHHHHHhC--CCcCCCEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEeCCHHHHH
Confidence 5655555544443344444422 122346899999999999999999998 8 6 8999999987654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00054 Score=71.85 Aligned_cols=92 Identities=22% Similarity=0.261 Sum_probs=63.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..|||.|+|+|.+|..+|..|... | |+|++++++++.++.+..+ + . ...+ .
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~-~-----~~v~vId~d~~~~~~~~~~-----~--------------~-~~~i---~ 52 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGE-N-----NDITIVDKDGDRLRELQDK-----Y--------------D-LRVV---N 52 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCST-T-----EEEEEEESCHHHHHHHHHH-----S--------------S-CEEE---E
T ss_pred CcCEEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECCHHHHHHHHHh-----c--------------C-cEEE---E
Confidence 469999999999999999999988 7 9999999999877642211 0 0 0111 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHH-hcCCCEEEEcCCchhHHHHHHHHHHHhhc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRYWKE 186 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~a-v~~aDiIIiaVps~~~~~vl~~i~~~l~~ 186 (461)
+| . .-.+-+++| +++||++|.++.++...-+.-.++..+.+
T Consensus 53 Gd-----------------------~-~~~~~L~~Agi~~ad~~ia~t~~De~Nl~~~~~Ak~~~~ 94 (461)
T 4g65_A 53 GH-----------------------A-SHPDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTLFN 94 (461)
T ss_dssp SC-----------------------T-TCHHHHHHHTTTTCSEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred Ec-----------------------C-CCHHHHHhcCCCcCCEEEEEcCChHHHHHHHHHHHHhcC
Confidence 11 0 001123444 78999999999998877777777765543
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00095 Score=65.24 Aligned_cols=150 Identities=18% Similarity=0.108 Sum_probs=85.8
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
++|||+|+|+ |.||..++..+....| +++. +++++.+.... . ....+.++.
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~-----~elva~~d~~~~~~~g-----------~----------d~~~~~g~~- 56 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEG-----VQLGAALEREGSSLLG-----------S----------DAGELAGAG- 56 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTT-----EECCCEECCTTCTTCS-----------C----------CTTCSSSSS-
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCchhhhh-----------h----------hHHHHcCCC-
Confidence 4589999998 9999999998875424 7766 66766532100 0 000000000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
...+..++|+++++.++|+||-++++....+.+.... .. +..+|+.+.|
T Consensus 57 -------------------------~~~v~~~~dl~~~l~~~DvVIDft~p~~~~~~~~~a~---~~---G~~vVigTtG 105 (273)
T 1dih_A 57 -------------------------KTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCR---QH---GKGMVIGTTG 105 (273)
T ss_dssp -------------------------CCSCCEESCSTTTTTSCSEEEECSCHHHHHHHHHHHH---HT---TCEEEECCCC
T ss_pred -------------------------cCCceecCCHHHHhcCCCEEEEcCChHHHHHHHHHHH---hC---CCCEEEECCC
Confidence 0134557788887888999997777666655555543 33 4556665667
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEe
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (461)
+..+. .+.+.+.-. ...++..||+...+.. --+.++...+.|. .++.+.+
T Consensus 106 ~~~e~---------~~~L~~~a~----~~~vv~a~N~siGvn~----------~~~l~~~aa~~~~-~~~diei 155 (273)
T 1dih_A 106 FDEAG---------KQAIRDAAA----DIAIVFAANFSVGVNV----------MLKLLEKAAKVMG-DYTDIEI 155 (273)
T ss_dssp CCHHH---------HHHHHHHTT----TSCEEECSCCCHHHHH----------HHHHHHHHHHHHT-TTSEEEE
T ss_pred CCHHH---------HHHHHHhcC----CCCEEEEecCcHHHHH----------HHHHHHHHHHhcC-CCCCEEE
Confidence 76541 133444321 1235677877543321 0234566677775 4555554
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0016 Score=67.46 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=65.8
Q ss_pred CCceEEEECccHH-HHHHHHHHHH--hcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 42 DPLRIVGVGAGAW-GSVFTAMLQD--SYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 42 ~~mkI~IIGaGam-G~alA~~La~--~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
++|||+|||+|+. +.++...|+. . ++ . ..+|.++|.++++++... . + .. .+..
T Consensus 1 ~~~KI~IIGaG~v~~~~l~~~l~~~~~-~l-~-~~el~L~Di~~~~~~~~~--~---~-~~-------------~~~~-- 56 (417)
T 1up7_A 1 RHMRIAVIGGGSSYTPELVKGLLDISE-DV-R-IDEVIFYDIDEEKQKIVV--D---F-VK-------------RLVK-- 56 (417)
T ss_dssp CCCEEEEETTTCTTHHHHHHHHHHHTT-TS-C-CCEEEEECSCHHHHHHHH--H---H-HH-------------HHHT--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhccc-CC-C-cCEEEEEeCCHHHHHHHH--H---H-HH-------------HHhh--
Confidence 3689999999984 2222234455 3 31 0 168999999987665311 0 0 00 0000
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch---------------------------
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--------------------------- 171 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--------------------------- 171 (461)
. . ..+..++|..+++++||+||++.-..
T Consensus 57 ----~--------------------~-~~v~~t~d~~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GG 111 (417)
T 1up7_A 57 ----D--------------------R-FKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGG 111 (417)
T ss_dssp ----T--------------------S-SEEEECSSHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHH
T ss_pred ----C--------------------C-eEEEEeCCHHHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccch
Confidence 0 0 14667789888899999999998321
Q ss_pred ---------hHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 172 ---------ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 172 ---------~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.+.++++++.++. + +.++..+|-++.
T Consensus 112 i~~~~rni~i~~~i~~~i~~~~-~----A~lin~TNPvdi 146 (417)
T 1up7_A 112 FSAALRAFPIVEEYVDTVRKTS-N----ATIVNFTNPSGH 146 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-C----CEEEECSSSHHH
T ss_pred hHHhhccHHHHHHHHHHHHHHC-C----EEEEEeCChHHH
Confidence 1445556666655 4 788989987754
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0021 Score=63.03 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=47.5
Q ss_pred CcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhh
Q 012547 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (461)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (461)
+|-++-.|-.-.--+.-|++.. .+....++.|+|+|.+|.+++..|++. | . +|++++|+.+++++
T Consensus 101 ~g~l~G~NTD~~G~~~~l~~~~--~~l~~k~vlVlGaGG~g~aia~~L~~~-G-----~~~v~i~~R~~~~a~~ 166 (283)
T 3jyo_A 101 TGHTTGHNTDVSGFGRGMEEGL--PNAKLDSVVQVGAGGVGNAVAYALVTH-G-----VQKLQVADLDTSRAQA 166 (283)
T ss_dssp TSCEEEECHHHHHHHHHHHHHC--TTCCCSEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEECSSHHHHHH
T ss_pred CCeEEEecCCHHHHHHHHHHhC--cCcCCCEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEECCHHHHHH
Confidence 5666666655444444555432 233446899999999999999999998 8 5 79999999887664
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0016 Score=65.82 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=64.0
Q ss_pred CceEEEECccHHHH-HHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~-alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++||+|||+|.+|. .++..+... + .+ |-+++++++.++.+.++ | .
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~-~-----~~lvav~d~~~~~a~~~a~~---------------------~-~----- 72 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRA-G-----ARLAGFHEKDDALAAEFSAV---------------------Y-A----- 72 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHT-T-----CEEEEEECSCHHHHHHHHHH---------------------S-S-----
T ss_pred CcEEEEECcCHHHHHHHHHHhhcC-C-----cEEEEEEcCCHHHHHHHHHH---------------------c-C-----
Confidence 57999999999984 566666655 5 55 55888888765531110 1 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
...+.+|+++.+.+ .|+|++|+|.....+++..... . +.. |.+-|
T Consensus 73 --------------------------~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~---a---Gkh-Vl~EK 119 (361)
T 3u3x_A 73 --------------------------DARRIATAEEILEDENIGLIVSAAVSSERAELAIRAMQ---H---GKD-VLVDK 119 (361)
T ss_dssp --------------------------SCCEESCHHHHHTCTTCCEEEECCCHHHHHHHHHHHHH---T---TCE-EEEES
T ss_pred --------------------------CCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH---C---CCe-EEEeC
Confidence 12456788888765 8999999999888777765543 3 333 44788
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
-+...
T Consensus 120 Pla~~ 124 (361)
T 3u3x_A 120 PGMTS 124 (361)
T ss_dssp CSCSS
T ss_pred CCCCC
Confidence 77654
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0013 Score=64.28 Aligned_cols=66 Identities=15% Similarity=0.307 Sum_probs=49.9
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-++.+|-...--..-|++ .|.. ..++|.|||+|.+|.+++..|+.. |. .+|++|+|+.+++++
T Consensus 93 ~~g~l~g~NTD~~G~~~~l~~-~~~~--~~~~vlvlGaGgaarav~~~L~~~-G~----~~i~v~nRt~~ka~~ 158 (271)
T 1npy_A 93 DNGFLRAYNTDYIAIVKLIEK-YHLN--KNAKVIVHGSGGMAKAVVAAFKNS-GF----EKLKIYARNVKTGQY 158 (271)
T ss_dssp ETTEEEEECHHHHHHHHHHHH-TTCC--TTSCEEEECSSTTHHHHHHHHHHT-TC----CCEEEECSCHHHHHH
T ss_pred cCCEEEeecCCHHHHHHHHHH-hCCC--CCCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHHH
Confidence 467677777766666666665 3432 346899999999999999999988 71 389999999876654
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0021 Score=64.76 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=62.8
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGaGamG~a-lA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+++||+|||+|.||.. .+..+....+ .+| -+++++++.+.+ .| +
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~------------------------~~-~---- 49 (362)
T 3fhl_A 4 EIIKTGLAAFGMSGQVFHAPFISTNPH-----FELYKIVERSKELSKE------------------------RY-P---- 49 (362)
T ss_dssp CCEEEEESCCSHHHHHTTHHHHHHCTT-----EEEEEEECSSCCGGGT------------------------TC-T----
T ss_pred CceEEEEECCCHHHHHHHHHHHhhCCC-----eEEEEEEcCCHHHHHH------------------------hC-C----
Confidence 4579999999999997 5666665412 555 477887653210 01 1
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
...+.+|+++.+.+ .|+|++|+|.....+++.... .. +.. |.+-
T Consensus 50 ---------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al---~a---Gkh-Vl~E 95 (362)
T 3fhl_A 50 ---------------------------QASIVRSFKELTEDPEIDLIVVNTPDNTHYEYAGMAL---EA---GKN-VVVE 95 (362)
T ss_dssp ---------------------------TSEEESCSHHHHTCTTCCEEEECSCGGGHHHHHHHHH---HT---TCE-EEEE
T ss_pred ---------------------------CCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHHHH---HC---CCe-EEEe
Confidence 23556788888766 899999999988877766544 33 333 4477
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
|-+...
T Consensus 96 KP~a~~ 101 (362)
T 3fhl_A 96 KPFTST 101 (362)
T ss_dssp SSCCSS
T ss_pred cCCCCC
Confidence 777554
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0016 Score=65.61 Aligned_cols=94 Identities=23% Similarity=0.232 Sum_probs=61.9
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGaGamG~a-lA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+++||+|||+|.||.. .+..+....+ .+| -+++++++++.+ .+ +
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~------------------------~~-~---- 49 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDE-----YQISKIMTSRTEEVKR------------------------DF-P---- 49 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTT-----EEEEEEECSCHHHHHH------------------------HC-T----
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCC-----eEEEEEEcCCHHHHHh------------------------hC-C----
Confidence 4589999999999986 5666654312 555 467777643210 01 1
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
...+.+|+++.+. +.|+|++|+|+....+++.... .. +..| .+-
T Consensus 50 ---------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al---~a---GkhV-l~E 95 (358)
T 3gdo_A 50 ---------------------------DAEVVHELEEITNDPAIELVIVTTPSGLHYEHTMACI---QA---GKHV-VME 95 (358)
T ss_dssp ---------------------------TSEEESSTHHHHTCTTCCEEEECSCTTTHHHHHHHHH---HT---TCEE-EEE
T ss_pred ---------------------------CCceECCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH---Hc---CCeE-EEe
Confidence 2355678888876 6899999999988877776544 33 3444 367
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
|.+...
T Consensus 96 KPla~~ 101 (358)
T 3gdo_A 96 KPMTAT 101 (358)
T ss_dssp SSCCSS
T ss_pred cCCcCC
Confidence 776554
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0013 Score=67.84 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=63.9
Q ss_pred CCceEEEECccH---HHHHHHHHHHHhcCCCCCCeeEE--EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccch
Q 012547 42 DPLRIVGVGAGA---WGSVFTAMLQDSYGYLRDKVLIR--IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (461)
Q Consensus 42 ~~mkI~IIGaGa---mG~alA~~La~~~G~~~~~~~V~--l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~ 116 (461)
+++||+|||+|. ||...+..+... + ..++. +++++++.+++..++ + +
T Consensus 36 ~~~rvgiiG~G~~~~ig~~h~~~~~~~-~----~~~lva~v~d~~~~~a~~~a~~---------------------~--g 87 (417)
T 3v5n_A 36 KRIRLGMVGGGSGAFIGAVHRIAARLD-D----HYELVAGALSSTPEKAEASGRE---------------------L--G 87 (417)
T ss_dssp CCEEEEEESCC--CHHHHHHHHHHHHT-S----CEEEEEEECCSSHHHHHHHHHH---------------------H--T
T ss_pred CcceEEEEcCCCchHHHHHHHHHHhhC-C----CcEEEEEEeCCCHHHHHHHHHH---------------------c--C
Confidence 457999999999 999888877765 3 25654 678888765532110 0 0
Q ss_pred hhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC-------CCEEEEcCCchhHHHHHHHHHHHhhccCC
Q 012547 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD-------ADIVINGLPSTETKEVFEEISRYWKERIT 189 (461)
Q Consensus 117 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~-------aDiIIiaVps~~~~~vl~~i~~~l~~~~~ 189 (461)
+ ....+.+|+++.+.+ .|+|++|+|.....+++.... ..
T Consensus 88 ~----------------------------~~~~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al---~a--- 133 (417)
T 3v5n_A 88 L----------------------------DPSRVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFL---KR--- 133 (417)
T ss_dssp C----------------------------CGGGBCSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHH---TT---
T ss_pred C----------------------------CcccccCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHH---hC---
Confidence 0 011345677777654 899999999988877766654 33
Q ss_pred CCEEEEEeecCccc
Q 012547 190 VPVIISLAKGVEAE 203 (461)
Q Consensus 190 ~~iIIs~tkGi~~~ 203 (461)
+.. |.|-|-+...
T Consensus 134 Gkh-Vl~EKPla~~ 146 (417)
T 3v5n_A 134 GIH-VICDKPLTST 146 (417)
T ss_dssp TCE-EEEESSSCSS
T ss_pred CCe-EEEECCCcCC
Confidence 344 4577876654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0014 Score=67.77 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=35.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
..|+|.|+|+|.+|..+|..|... | ++|++++++++.++.
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~-g-----~~vvvId~d~~~v~~ 42 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSS-G-----VKMVVLDHDPDHIET 42 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 347899999999999999999998 8 999999999987764
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0061 Score=62.21 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=32.2
Q ss_pred CCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 42 ~~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
.++||+|+| +|.+|.+++..|+.. +.+.+..++.|++.+.+.
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~-~l~~e~~~l~L~d~d~~~ 73 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASG-EVFGQDQPIALKLLGSER 73 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGG
T ss_pred CCCEEEEECCCChHHHHHHHHHHcC-CcCCCCceeEEEecCccc
Confidence 568999999 799999999999988 765432347787665543
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0015 Score=65.07 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=28.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~ 83 (461)
++||+|||+|+||..++..+.+. + +.+ |.+++++++
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~-~----~~elvav~d~~~~ 39 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQ-P----DMDLVGIFSRRAT 39 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTC-S----SEEEEEEEESSSC
T ss_pred CCEEEEEeecHHHHHHHHHHhcC-C----CCEEEEEEcCCHH
Confidence 57999999999999999998765 3 144 457777753
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00091 Score=62.91 Aligned_cols=37 Identities=14% Similarity=-0.031 Sum_probs=32.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++|.|+|+|.+|..++..|.+. | + |++++++++.++
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~-g-----~-v~vid~~~~~~~ 45 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGS-E-----V-FVLAEDENVRKK 45 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTS-E-----E-EEEESCGGGHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhC-C-----e-EEEEECCHHHHH
Confidence 47899999999999999999887 7 8 999999987654
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0018 Score=67.35 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=70.2
Q ss_pred hHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhH
Q 012547 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104 (461)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~ 104 (461)
-+.-+|.+++-.+.. -.-++|+|+|.|.+|..+|..|... | .+|++|++++......
T Consensus 194 ~~slldgi~ratg~~-L~GktVgIiG~G~IG~~vA~~Lka~-G-----a~Viv~D~~p~~a~~A---------------- 250 (436)
T 3h9u_A 194 RESLVDGIKRATDVM-IAGKTACVCGYGDVGKGCAAALRGF-G-----ARVVVTEVDPINALQA---------------- 250 (436)
T ss_dssp HHHHHHHHHHHHCCC-CTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHH----------------
T ss_pred hHHHHHHHHHhcCCc-ccCCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCChhhhHHH----------------
Confidence 334466776665443 2336899999999999999999887 8 8999999987432210
Q ss_pred HhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHh
Q 012547 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYW 184 (461)
Q Consensus 105 ~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l 184 (461)
.. . +.. ..+++++++.||+|+++.....+-. .+....+
T Consensus 251 ---------~~------------------~------------G~~-~~sL~eal~~ADVVilt~gt~~iI~--~e~l~~M 288 (436)
T 3h9u_A 251 ---------AM------------------E------------GYQ-VLLVEDVVEEAHIFVTTTGNDDIIT--SEHFPRM 288 (436)
T ss_dssp ---------HH------------------T------------TCE-ECCHHHHTTTCSEEEECSSCSCSBC--TTTGGGC
T ss_pred ---------HH------------------h------------CCe-ecCHHHHHhhCCEEEECCCCcCccC--HHHHhhc
Confidence 00 0 122 2478899999999999776543211 1223334
Q ss_pred hccCCCCEEEEEeec
Q 012547 185 KERITVPVIISLAKG 199 (461)
Q Consensus 185 ~~~~~~~iIIs~tkG 199 (461)
++ ++++|.+..|
T Consensus 289 K~---gAIVINvgRg 300 (436)
T 3h9u_A 289 RD---DAIVCNIGHF 300 (436)
T ss_dssp CT---TEEEEECSSS
T ss_pred CC---CcEEEEeCCC
Confidence 55 6778877765
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0011 Score=69.77 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=33.8
Q ss_pred ccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 19 HHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
||..|.++..+. ++||.|+|+|.+|.+++..|++. + +++|++++|+.++++.
T Consensus 11 ~~~~~~~~~~l~------------~k~VlIiGAGgiG~aia~~L~~~-~----g~~V~v~~R~~~ka~~ 62 (467)
T 2axq_A 11 HHSSGHIEGRHM------------GKNVLLLGSGFVAQPVIDTLAAN-D----DINVTVACRTLANAQA 62 (467)
T ss_dssp ------------------------CEEEEEECCSTTHHHHHHHHHTS-T----TEEEEEEESSHHHHHH
T ss_pred cccCCccccCCC------------CCEEEEECChHHHHHHHHHHHhC-C----CCeEEEEECCHHHHHH
Confidence 566676654432 36899999999999999999976 3 2789999999876553
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0019 Score=68.02 Aligned_cols=92 Identities=16% Similarity=0.054 Sum_probs=63.1
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
...++|+|||.|.+|..+|..+... | .+|++|+++...... ...
T Consensus 255 l~GktVgIIG~G~IG~~vA~~l~~~-G-----~~Viv~d~~~~~~~~-------------------------a~~----- 298 (479)
T 1v8b_A 255 ISGKIVVICGYGDVGKGCASSMKGL-G-----ARVYITEIDPICAIQ-------------------------AVM----- 298 (479)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSCHHHHHH-------------------------HHT-----
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhC-c-----CEEEEEeCChhhHHH-------------------------HHH-----
Confidence 3457999999999999999999887 8 899999998753211 000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
. .+.. .++++++++||+|++++....+- -.+....+++ ++++|.+.-|
T Consensus 299 -------------~------------g~~~-~~l~ell~~aDiVi~~~~t~~lI--~~~~l~~MK~---gailiNvgrg 346 (479)
T 1v8b_A 299 -------------E------------GFNV-VTLDEIVDKGDFFITCTGNVDVI--KLEHLLKMKN---NAVVGNIGHF 346 (479)
T ss_dssp -------------T------------TCEE-CCHHHHTTTCSEEEECCSSSSSB--CHHHHTTCCT---TCEEEECSST
T ss_pred -------------c------------CCEe-cCHHHHHhcCCEEEECCChhhhc--CHHHHhhcCC---CcEEEEeCCC
Confidence 0 1222 46888999999999997543321 0122333555 6788877765
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0064 Score=58.28 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|.|||+|.+|+.+|..|+.. |. .++++++++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~-Gv----~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASA-GV----GNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHc-CC----CeEEEEcCCC
Confidence 6899999999999999999999 82 4899999986
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0029 Score=61.44 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=47.3
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-++-.|-.-.--+.-|++ .|. +...++|.|+|+|.+|.+++..|++. | .+|++|+|+.+++++
T Consensus 92 ~~g~l~g~NTD~~G~~~~L~~-~~~-~~~~~~vlvlGaGg~g~a~a~~L~~~-G-----~~v~v~~R~~~~a~~ 157 (272)
T 1p77_A 92 DDGKLYADNTDGIGLVTDLQR-LNW-LRPNQHVLILGAGGATKGVLLPLLQA-Q-----QNIVLANRTFSKTKE 157 (272)
T ss_dssp TTSCEEEECCHHHHHHHHHHH-TTC-CCTTCEEEEECCSHHHHTTHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred cCCEEEEecCCHHHHHHHHHH-hCC-CcCCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 455444455444444444554 232 23447899999999999999999998 8 899999999876654
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0015 Score=66.65 Aligned_cols=98 Identities=10% Similarity=0.037 Sum_probs=64.4
Q ss_pred CceEEEECccH---HHHHHHHHHHHhcCCCCCCeeEE--EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 43 PLRIVGVGAGA---WGSVFTAMLQDSYGYLRDKVLIR--IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 43 ~mkI~IIGaGa---mG~alA~~La~~~G~~~~~~~V~--l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
++||+|||+|. ||...+..+... + ..++. +++++++.++.+.++ | ++
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~-~----~~~lva~v~d~~~~~a~~~a~~---------------------~--g~ 63 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRD-N----TFVLVAGAFDIDPIRGSAFGEQ---------------------L--GV 63 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGG-G----SEEEEEEECCSSHHHHHHHHHH---------------------T--TC
T ss_pred cceEEEEcCCccchhHHHHHHHHhhC-C----CeEEEEEEeCCCHHHHHHHHHH---------------------h--CC
Confidence 47999999999 999988888766 3 25655 578887765532110 0 00
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC-------CCEEEEcCCchhHHHHHHHHHHHhhccCCC
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD-------ADIVINGLPSTETKEVFEEISRYWKERITV 190 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~-------aDiIIiaVps~~~~~vl~~i~~~l~~~~~~ 190 (461)
....+.+|+++.+.+ .|+|++|+|.....+++..... . +
T Consensus 64 ----------------------------~~~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~---a---G 109 (398)
T 3dty_A 64 ----------------------------DSERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALE---A---G 109 (398)
T ss_dssp ----------------------------CGGGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHH---T---T
T ss_pred ----------------------------CcceeeCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHHHH---C---C
Confidence 011345677777653 8999999999988777766543 3 3
Q ss_pred CEEEEEeecCccc
Q 012547 191 PVIISLAKGVEAE 203 (461)
Q Consensus 191 ~iIIs~tkGi~~~ 203 (461)
.. |.|-|-+...
T Consensus 110 kh-Vl~EKPla~~ 121 (398)
T 3dty_A 110 LH-VVCEKPLCFT 121 (398)
T ss_dssp CE-EEECSCSCSC
T ss_pred Ce-EEEeCCCcCC
Confidence 43 3467776553
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00077 Score=68.99 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=35.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
...||+|||+|.+|..+|..+... | .+|++|+++.++++.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~l-G-----a~V~v~D~~~~~l~~ 222 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRL-G-----AKTTGYDVRPEVAEQ 222 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHH-T-----CEEEEECSSGGGHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 447999999999999999999888 8 899999999876654
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0018 Score=64.66 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=59.6
Q ss_pred CceEEEECccHHHH-HHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~-alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++||+|||+|.||. ..+..+....+ .+| -+++++++. +
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~-----~~lvav~d~~~~~----------------------------~------- 64 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNAN-----FKLVATASRHGTV----------------------------E------- 64 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTT-----EEEEEEECSSCCC----------------------------T-------
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCC-----eEEEEEEeCChhh----------------------------c-------
Confidence 57999999999998 67888876512 554 356665421 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc---CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~---~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
++...+|+++.+. +.|+|++|+|+....+++..... . +..|+ +-
T Consensus 65 --------------------------g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~~al~---a---GkhVl-~E 111 (330)
T 4ew6_A 65 --------------------------GVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAYKALV---A---GKHVF-LE 111 (330)
T ss_dssp --------------------------TSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH---T---TCEEE-EC
T ss_pred --------------------------CCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHH---c---CCcEE-Ee
Confidence 2335577887765 48999999999888777766543 3 34444 77
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
|.+...
T Consensus 112 KP~a~~ 117 (330)
T 4ew6_A 112 KPPGAT 117 (330)
T ss_dssp SSSCSS
T ss_pred CCCCCC
Confidence 766543
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0061 Score=60.26 Aligned_cols=96 Identities=11% Similarity=-0.004 Sum_probs=64.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.|+||+|||+ |.||...+..+... + ..-|.+++++++.... . .+.+
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~-~----~~lvav~d~~~~~~~~----------~-------------~~~~----- 48 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEV-G----GVLVASLDPATNVGLV----------D-------------SFFP----- 48 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHT-T----CEEEEEECSSCCCGGG----------G-------------GTCT-----
T ss_pred CceEEEEECCChHHHHHHHHHHHhC-C----CEEEEEEcCCHHHHHH----------H-------------hhCC-----
Confidence 4689999999 78999999999877 6 1345678888754210 0 0011
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh----------cCCCEEEEcCCchhHHHHHHHHHHHhhccCCC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV----------WDADIVINGLPSTETKEVFEEISRYWKERITV 190 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av----------~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~ 190 (461)
...+.+|.++.+ .+.|+|++|+|+....+++..... . +
T Consensus 49 --------------------------~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~al~---a---G 96 (312)
T 3o9z_A 49 --------------------------EAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRMALR---L---G 96 (312)
T ss_dssp --------------------------TCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGGGHHHHHHHHHH---T---T
T ss_pred --------------------------CCceeCCHHHHHHHhhhhcccCCCCcEEEECCCchhhHHHHHHHHH---C---C
Confidence 235566777665 568999999999988887766543 3 3
Q ss_pred CEEEEEeecCccc
Q 012547 191 PVIISLAKGVEAE 203 (461)
Q Consensus 191 ~iIIs~tkGi~~~ 203 (461)
..| .+-|.+...
T Consensus 97 khV-l~EKPla~~ 108 (312)
T 3o9z_A 97 ANA-LSEKPLVLW 108 (312)
T ss_dssp CEE-EECSSSCSC
T ss_pred CeE-EEECCCCCC
Confidence 444 477877654
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0032 Score=63.02 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=34.5
Q ss_pred eEEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 148 LKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 148 i~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
+...+|+++.+.+ .|+|++|+|+....+++.... .. +..|+ +-|.+...
T Consensus 51 ~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~a---Gk~Vl-~EKP~a~~ 101 (349)
T 3i23_A 51 VNFTADLNELLTDPEIELITICTPAHTHYDLAKQAI---LA---GKSVI-VEKPFCDT 101 (349)
T ss_dssp CEEESCTHHHHSCTTCCEEEECSCGGGHHHHHHHHH---HT---TCEEE-ECSCSCSS
T ss_pred CeEECCHHHHhcCCCCCEEEEeCCcHHHHHHHHHHH---Hc---CCEEE-EECCCcCC
Confidence 4566888888765 899999999988877776654 33 34443 67776543
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0044 Score=60.79 Aligned_cols=67 Identities=19% Similarity=0.089 Sum_probs=47.4
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-++-.|-.-.--+.-|++. |. +...+++.|+|+|.+|.+++..|++. |. .+|++|+|+.+++++
T Consensus 99 ~~g~l~G~NTD~~G~~~~L~~~-~~-~l~~k~vlvlGaGg~g~aia~~L~~~-G~----~~v~v~~R~~~~a~~ 165 (281)
T 3o8q_A 99 DDGEILGDNTDGEGLVQDLLAQ-QV-LLKGATILLIGAGGAARGVLKPLLDQ-QP----ASITVTNRTFAKAEQ 165 (281)
T ss_dssp TTSCEEEECCHHHHHHHHHHHT-TC-CCTTCEEEEECCSHHHHHHHHHHHTT-CC----SEEEEEESSHHHHHH
T ss_pred CCCcEEEEecHHHHHHHHHHHh-CC-CccCCEEEEECchHHHHHHHHHHHhc-CC----CeEEEEECCHHHHHH
Confidence 4665665565544444445442 22 23447899999999999999999998 71 389999999877654
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0025 Score=67.31 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=66.0
Q ss_pred HHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcc
Q 012547 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRC 111 (461)
Q Consensus 32 ~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~ 111 (461)
+++..|. +...++|+|||.|.+|..+|..+..- | .+|++|+++...... .
T Consensus 267 w~~~~g~-~L~GktVgIIG~G~IG~~vA~~l~~~-G-----~~V~v~d~~~~~~~~-----------a------------ 316 (494)
T 3d64_A 267 IKRATDV-MIAGKIAVVAGYGDVGKGCAQSLRGL-G-----ATVWVTEIDPICALQ-----------A------------ 316 (494)
T ss_dssp HHHHHCC-CCTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSCHHHHHH-----------H------------
T ss_pred hhhcccc-ccCCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCChHhHHH-----------H------------
Confidence 3444442 33447999999999999999999876 7 899999998753210 0
Q ss_pred cccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCC
Q 012547 112 AYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVP 191 (461)
Q Consensus 112 ~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~ 191 (461)
.. . +... .++++++++||+|++++....+- -++....+++ ++
T Consensus 317 --~~------------------~------------G~~~-~~l~ell~~aDiVi~~~~t~~lI--~~~~l~~MK~---gA 358 (494)
T 3d64_A 317 --AM------------------E------------GYRV-VTMEYAADKADIFVTATGNYHVI--NHDHMKAMRH---NA 358 (494)
T ss_dssp --HT------------------T------------TCEE-CCHHHHTTTCSEEEECSSSSCSB--CHHHHHHCCT---TE
T ss_pred --HH------------------c------------CCEe-CCHHHHHhcCCEEEECCCccccc--CHHHHhhCCC---Cc
Confidence 00 0 1222 46888999999999998543211 0223334555 67
Q ss_pred EEEEEeec
Q 012547 192 VIISLAKG 199 (461)
Q Consensus 192 iIIs~tkG 199 (461)
++|.+.-|
T Consensus 359 ilINvgrg 366 (494)
T 3d64_A 359 IVCNIGHF 366 (494)
T ss_dssp EEEECSSS
T ss_pred EEEEcCCC
Confidence 88877766
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0058 Score=63.34 Aligned_cols=101 Identities=17% Similarity=0.117 Sum_probs=64.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+++||+|||+|.||...+..+....+ .+| .++++++++++.+.+ .+.+ + ++
T Consensus 19 ~~~rvgiIG~G~~g~~h~~~l~~~~~-----~~lvav~d~~~~~~~~~a~-----~~~~-------------~--g~--- 70 (444)
T 2ixa_A 19 KKVRIAFIAVGLRGQTHVENMARRDD-----VEIVAFADPDPYMVGRAQE-----ILKK-------------N--GK--- 70 (444)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTT-----EEEEEEECSCHHHHHHHHH-----HHHH-------------T--TC---
T ss_pred CCceEEEEecCHHHHHHHHHHHhCCC-----cEEEEEEeCCHHHHHHHHH-----HHHh-------------c--CC---
Confidence 45799999999999998888876413 554 588888876553211 0000 0 00
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEec----CHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEE
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVT----NLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~----dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iII 194 (461)
....+.+ |+++.+. +.|+|++|+|.....+++.+.. .. +..|
T Consensus 71 -------------------------~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~h~~~~~~al---~a---GkhV- 118 (444)
T 2ixa_A 71 -------------------------KPAKVFGNGNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVAAM---KA---GKIV- 118 (444)
T ss_dssp -------------------------CCCEEECSSTTTHHHHTTCTTCCEEEECCCGGGHHHHHHHHH---HT---TCEE-
T ss_pred -------------------------CCCceeccCCCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH---HC---CCeE-
Confidence 0133445 8888876 5899999999988777666543 33 4444
Q ss_pred EEeecCcc
Q 012547 195 SLAKGVEA 202 (461)
Q Consensus 195 s~tkGi~~ 202 (461)
.+-|-+..
T Consensus 119 ~~EKP~a~ 126 (444)
T 2ixa_A 119 GMEVSGAI 126 (444)
T ss_dssp EECCCCCS
T ss_pred EEeCCCcC
Confidence 46676543
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.003 Score=66.43 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=59.2
Q ss_pred CCCceEEEECc----cHHHHHHHHHHHHh-cCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhccccc
Q 012547 41 GDPLRIVGVGA----GAWGSVFTAMLQDS-YGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYL 114 (461)
Q Consensus 41 ~~~mkI~IIGa----GamG~alA~~La~~-~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l 114 (461)
.+++||+|||+ |.||...+..|... .+ .+| .+++++++.++.+.+ . +
T Consensus 37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~-----~~lvav~d~~~~~a~~~a~--------~-------------~- 89 (479)
T 2nvw_A 37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQ-----FQIVALYNPTLKSSLQTIE--------Q-------------L- 89 (479)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTT-----EEEEEEECSCHHHHHHHHH--------H-------------T-
T ss_pred CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCC-----eEEEEEEeCCHHHHHHHHH--------H-------------c-
Confidence 34689999999 99999999988764 23 564 578888765543111 0 0
Q ss_pred chhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHH
Q 012547 115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (461)
Q Consensus 115 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~ 181 (461)
++ ....+.+|+++.+. +.|+|++|+|.....+++....
T Consensus 90 -g~----------------------------~~~~~~~d~~ell~~~~vD~V~I~tp~~~H~~~~~~al 129 (479)
T 2nvw_A 90 -QL----------------------------KHATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNIL 129 (479)
T ss_dssp -TC----------------------------TTCEEESCHHHHHHCTTCSEEEECSCHHHHHHHHHHHH
T ss_pred -CC----------------------------CcceeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH
Confidence 00 02346688888875 6899999999988777766544
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.01 Score=61.96 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=36.4
Q ss_pred hHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhh
Q 012547 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDR 87 (461)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~ 87 (461)
|-.+|.+.... .+++||+|||+|.||..++..+....+ .+ |-+++++.++++.
T Consensus 10 l~~~l~~r~~~-----~k~IRVGIIGaG~iG~~~~~~l~~~~~-----veLvAV~D~~~era~~ 63 (446)
T 3upl_A 10 LARDLAARAET-----GKPIRIGLIGAGEMGTDIVTQVARMQG-----IEVGALSARRLPNTFK 63 (446)
T ss_dssp HHHHHHHHHHT-----TCCEEEEEECCSHHHHHHHHHHTTSSS-----EEEEEEECSSTHHHHH
T ss_pred HHHHHHHHHhc-----CCceEEEEECChHHHHHHHHHHhhCCC-----cEEEEEEeCCHHHHHH
Confidence 45555443332 356899999999999999988765412 44 5578888876654
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0048 Score=61.75 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=62.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCC--CCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYL--RDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~--~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+-||+|||+|.||..-+..+......+ .+..+ |-+++++++.+++..++ | .
T Consensus 25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~---------------------~-g---- 78 (393)
T 4fb5_A 25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGE---------------------F-G---- 78 (393)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHH---------------------H-T----
T ss_pred CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHH---------------------h-C----
Confidence 468999999999987666553210000 00123 55788888766542110 0 0
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
-.++.+|+++.+. +.|+|++|+|+....+++..... . +.. |.|-
T Consensus 79 ---------------------------~~~~y~d~~ell~~~~iDaV~IatP~~~H~~~a~~al~---a---Gkh-Vl~E 124 (393)
T 4fb5_A 79 ---------------------------FEKATADWRALIADPEVDVVSVTTPNQFHAEMAIAALE---A---GKH-VWCE 124 (393)
T ss_dssp ---------------------------CSEEESCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---T---TCE-EEEC
T ss_pred ---------------------------CCeecCCHHHHhcCCCCcEEEECCChHHHHHHHHHHHh---c---CCe-EEEc
Confidence 1145688888775 47999999999988887766543 2 333 4578
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
|-+...
T Consensus 125 KPla~~ 130 (393)
T 4fb5_A 125 KPMAPA 130 (393)
T ss_dssp SCSCSS
T ss_pred cCCccc
Confidence 887764
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0079 Score=59.59 Aligned_cols=96 Identities=14% Similarity=0.010 Sum_probs=64.4
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.|+||+|||+ |.||...+..+... + ..-|.+++++++.... .. ..+
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~-~----~~lvav~d~~~~~~~~----------~~-------------~~~----- 48 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDT-G----NCLVSAYDINDSVGII----------DS-------------ISP----- 48 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHT-T----CEEEEEECSSCCCGGG----------GG-------------TCT-----
T ss_pred CceEEEEECCCcHHHHHHHHHHHhC-C----CEEEEEEcCCHHHHHH----------Hh-------------hCC-----
Confidence 4689999999 78999999999877 6 1346678887653210 00 011
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh-----------cCCCEEEEcCCchhHHHHHHHHHHHhhccCC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-----------WDADIVINGLPSTETKEVFEEISRYWKERIT 189 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av-----------~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~ 189 (461)
...+.+|+++.+ .+.|+|++|+|+....+++..... .
T Consensus 49 --------------------------~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~~H~~~~~~al~---a--- 96 (318)
T 3oa2_A 49 --------------------------QSEFFTEFEFFLDHASNLKRDSATALDYVSICSPNYLHYPHIAAGLR---L--- 96 (318)
T ss_dssp --------------------------TCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCGGGHHHHHHHHHH---T---
T ss_pred --------------------------CCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCcHHHHHHHHHHHH---C---
Confidence 234566777654 568999999999988887766543 2
Q ss_pred CCEEEEEeecCccc
Q 012547 190 VPVIISLAKGVEAE 203 (461)
Q Consensus 190 ~~iIIs~tkGi~~~ 203 (461)
+.. |.+-|-+...
T Consensus 97 Gkh-Vl~EKPla~~ 109 (318)
T 3oa2_A 97 GCD-VICEKPLVPT 109 (318)
T ss_dssp TCE-EEECSSCCSC
T ss_pred CCe-EEEECCCcCC
Confidence 333 4477876654
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0023 Score=66.31 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=59.1
Q ss_pred CCceEEEECc----cHHHHHHHHHHHHh-cCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccc
Q 012547 42 DPLRIVGVGA----GAWGSVFTAMLQDS-YGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK 115 (461)
Q Consensus 42 ~~mkI~IIGa----GamG~alA~~La~~-~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~ 115 (461)
+++||+|||+ |.||...+..|.+. .+ .+| .+++++++.++.+.+ . +
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~-----~~lvav~d~~~~~~~~~a~--------~-------------~-- 70 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQ-----FQITALYSPKIETSIATIQ--------R-------------L-- 70 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTTT-----EEEEEEECSSHHHHHHHHH--------H-------------T--
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcCCC-----eEEEEEEeCCHHHHHHHHH--------H-------------c--
Confidence 4589999999 99999999988764 23 564 578888765543111 0 0
Q ss_pred hhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHH
Q 012547 116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 116 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~ 182 (461)
++ ..+.+.+|+++.+. +.|+|++|+|.....+++.....
T Consensus 71 g~----------------------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~ 111 (438)
T 3btv_A 71 KL----------------------------SNATAFPTLESFASSSTIDMIVIAIQVASHYEVVMPLLE 111 (438)
T ss_dssp TC----------------------------TTCEEESSHHHHHHCSSCSEEEECSCHHHHHHHHHHHHH
T ss_pred CC----------------------------CcceeeCCHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 00 02346678888875 58999999999887777665543
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0054 Score=52.72 Aligned_cols=90 Identities=14% Similarity=0.081 Sum_probs=62.0
Q ss_pred CCCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccch
Q 012547 41 GDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (461)
Q Consensus 41 ~~~mkI~IIGa----GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~ 116 (461)
..+.+|+|||+ +.+|..+...|.+. | ++|+.++...+.+.
T Consensus 2 ~~p~siAVVGaS~~~~~~g~~v~~~L~~~-g-----~~V~pVnP~~~~i~------------------------------ 45 (122)
T 3ff4_A 2 NAMKKTLILGATPETNRYAYLAAERLKSH-G-----HEFIPVGRKKGEVL------------------------------ 45 (122)
T ss_dssp CCCCCEEEETCCSCTTSHHHHHHHHHHHH-T-----CCEEEESSSCSEET------------------------------
T ss_pred CCCCEEEEEccCCCCCCHHHHHHHHHHHC-C-----CeEEEECCCCCcCC------------------------------
Confidence 35678999998 67999999999988 8 77777765533211
Q ss_pred hhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEE
Q 012547 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (461)
Q Consensus 117 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~ 196 (461)
+..+..++.+.-. .|++++++|+..+.++++++... .. . .|.+
T Consensus 46 ------------------------------G~~~y~sl~dlp~-vDlavi~~p~~~v~~~v~e~~~~-g~----k-~v~~ 88 (122)
T 3ff4_A 46 ------------------------------GKTIINERPVIEG-VDTVTLYINPQNQLSEYNYILSL-KP----K-RVIF 88 (122)
T ss_dssp ------------------------------TEECBCSCCCCTT-CCEEEECSCHHHHGGGHHHHHHH-CC----S-EEEE
T ss_pred ------------------------------CeeccCChHHCCC-CCEEEEEeCHHHHHHHHHHHHhc-CC----C-EEEE
Confidence 1122223333223 79999999999999999998763 21 2 3568
Q ss_pred eecCccc
Q 012547 197 AKGVEAE 203 (461)
Q Consensus 197 tkGi~~~ 203 (461)
+.|+..+
T Consensus 89 ~~G~~~~ 95 (122)
T 3ff4_A 89 NPGTENE 95 (122)
T ss_dssp CTTCCCH
T ss_pred CCCCChH
Confidence 8898643
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0033 Score=66.43 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=32.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
-++|+|+|+|.+|..+|..+... | .+|+++++++..+
T Consensus 274 GktV~IiG~G~IG~~~A~~lka~-G-----a~Viv~d~~~~~~ 310 (494)
T 3ce6_A 274 GKKVLICGYGDVGKGCAEAMKGQ-G-----ARVSVTEIDPINA 310 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHH
T ss_pred cCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 36899999999999999999877 8 8999999987644
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0015 Score=66.50 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=34.6
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
...++|+|+|+|.+|.+++..+... | .+|++|+++++.++
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~-G-----a~V~~~d~~~~~l~ 205 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGM-G-----ATVTVLDINIDKLR 205 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHH
Confidence 3457999999999999999999887 8 79999999987654
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0036 Score=64.33 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=33.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~ 86 (461)
..++|+|||+|.||.+++..+... | . +|++++|+.++++
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~~~-G-----~~~V~v~~r~~~ra~ 205 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLVDR-G-----VRAVLVANRTYERAV 205 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHH-C-----CSEEEEECSSHHHHH
T ss_pred cCCEEEEEChHHHHHHHHHHHHHC-C-----CCEEEEEeCCHHHHH
Confidence 346899999999999999999988 8 6 8999999986543
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.011 Score=57.32 Aligned_cols=66 Identities=23% Similarity=0.189 Sum_probs=46.7
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-++-.|-.-.--+.-|++. |. +-..+++.|+|+|.+|.+++..|++. | .+|++|+|+.++++.
T Consensus 92 ~~g~l~G~ntD~~G~~~~L~~~-~~-~l~~k~vlViGaGg~g~a~a~~L~~~-G-----~~V~v~~R~~~~~~~ 157 (271)
T 1nyt_A 92 EDGRLLGDNTDGVGLLSDLERL-SF-IRPGLRILLIGAGGASRGVLLPLLSL-D-----CAVTITNRTVSRAEE 157 (271)
T ss_dssp TTSCEEEECCHHHHHHHHHHHH-TC-CCTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHH
T ss_pred CCCeEEEeCCCHHHHHHHHHhc-Cc-CcCCCEEEEECCcHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHH
Confidence 4554555554444444445442 22 22346899999999999999999999 8 899999999876554
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.012 Score=58.23 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=29.9
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEec--Cch
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRR--PGR 83 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r--~~~ 83 (461)
|||+|+|+ |.+|++++..|+.. |.. .++.++++ +++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~-~~~---~el~L~Di~~~~~ 39 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKE-PFM---KDLVLIGREHSIN 39 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC-TTC---CEEEEEECGGGHH
T ss_pred CEEEEECCCChhHHHHHHHHHhC-CCC---CEEEEEcCCCchh
Confidence 79999999 99999999999877 631 46899998 543
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.012 Score=57.92 Aligned_cols=95 Identities=18% Similarity=0.212 Sum_probs=67.4
Q ss_pred CCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 41 ~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
.+.+||+|+|+ |.||..++..+.+. | ++ .++..++.... ...
T Consensus 5 ~~~~~VaVvGasG~~G~~~~~~l~~~-g-----~~-~v~~VnP~~~g-------------------------~~i----- 47 (288)
T 1oi7_A 5 NRETRVLVQGITGREGQFHTKQMLTY-G-----TK-IVAGVTPGKGG-------------------------MEV----- 47 (288)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTT-------------------------CEE-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHc-C-----Ce-EEEEECCCCCC-------------------------ceE-----
Confidence 35679999998 99999999999887 7 66 34444442100 000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
.++.+..+++++.+ ++|+++++||+....+++++.... + -..+|..+
T Consensus 48 --------------------------~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~~~~~~ea~~~---G--i~~vVi~t 96 (288)
T 1oi7_A 48 --------------------------LGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHA---G--IPLIVLIT 96 (288)
T ss_dssp --------------------------TTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHHHHHHT---T--CSEEEECC
T ss_pred --------------------------CCEEeeCCHHHHhhcCCCCEEEEecCHHHHHHHHHHHHHC---C--CCEEEEEC
Confidence 13556677888777 899999999999999999887652 1 13466678
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
.|+...
T Consensus 97 ~G~~~~ 102 (288)
T 1oi7_A 97 EGIPTL 102 (288)
T ss_dssp SCCCHH
T ss_pred CCCCHH
Confidence 888653
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0037 Score=63.20 Aligned_cols=96 Identities=15% Similarity=0.248 Sum_probs=63.6
Q ss_pred CCceEEEEC-ccHHHHH-HH----HHHHHhcCCCCCCeeE----------EEEecCchhhhhhhhhhHHHHHhhhhhhHH
Q 012547 42 DPLRIVGVG-AGAWGSV-FT----AMLQDSYGYLRDKVLI----------RIWRRPGRSVDRATAEHLFEVINSREDVLR 105 (461)
Q Consensus 42 ~~mkI~IIG-aGamG~a-lA----~~La~~~G~~~~~~~V----------~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~ 105 (461)
+++||+||| +|.||.. .+ ..+... +. ..+ .++++++++++.+.++
T Consensus 5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~-~~----~~l~~~~~~~~~~av~~~~~~~a~~~a~~-------------- 65 (383)
T 3oqb_A 5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQ-GG----VRLKNGDRIMPDPILVGRSAEKVEALAKR-------------- 65 (383)
T ss_dssp EEEEEEEESTTSTHHHHTTTTTTHHHHHHH-TS----EECTTSCEEEEEEEEECSSSHHHHHHHHH--------------
T ss_pred ceeEEEEEeccchhhhhhhHHHHHHHHhhc-Cc----eeecCCcccceeeEEEcCCHHHHHHHHHH--------------
Confidence 458999999 9999998 66 666655 31 222 3899998766532110
Q ss_pred hhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCe-EEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHH
Q 012547 106 RLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 106 ~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~ 182 (461)
| ++ .+.+|+++.+.+ .|+|++|+|+....+++....
T Consensus 66 -------~---------------------------------~~~~~~~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al- 104 (383)
T 3oqb_A 66 -------F---------------------------------NIARWTTDLDAALADKNDTMFFDAATTQARPGLLTQAI- 104 (383)
T ss_dssp -------T---------------------------------TCCCEESCHHHHHHCSSCCEEEECSCSSSSHHHHHHHH-
T ss_pred -------h---------------------------------CCCcccCCHHHHhcCCCCCEEEECCCchHHHHHHHHHH-
Confidence 0 11 346788887755 799999999887777665543
Q ss_pred HhhccCCCCEEEEEeecCccc
Q 012547 183 YWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 183 ~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.. +..|+ +-|.+...
T Consensus 105 --~~---Gk~V~-~EKP~a~~ 119 (383)
T 3oqb_A 105 --NA---GKHVY-CEKPIATN 119 (383)
T ss_dssp --TT---TCEEE-ECSCSCSS
T ss_pred --HC---CCeEE-EcCCCCCC
Confidence 33 44444 78876543
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.007 Score=60.48 Aligned_cols=100 Identities=14% Similarity=0.057 Sum_probs=64.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCC--CCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGY--LRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~--~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.||+|||+|.||...+..+....+. +....+ |-+++++++.+++..++ | .
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~---------------------~-g----- 59 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGK---------------------L-G----- 59 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHH---------------------H-T-----
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHH---------------------c-C-----
Confidence 4899999999999888777654110 000023 44778888765542110 0 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
-..+.+|+++.+. +.|+|++|+|+....+++..... . +.. |.|-|
T Consensus 60 --------------------------~~~~~~d~~~ll~~~~iDaV~I~tP~~~H~~~~~~al~---a---Gkh-Vl~EK 106 (390)
T 4h3v_A 60 --------------------------WSTTETDWRTLLERDDVQLVDVCTPGDSHAEIAIAALE---A---GKH-VLCEK 106 (390)
T ss_dssp --------------------------CSEEESCHHHHTTCTTCSEEEECSCGGGHHHHHHHHHH---T---TCE-EEEES
T ss_pred --------------------------CCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH---c---CCC-ceeec
Confidence 1145678888775 47999999999988887766543 2 333 45888
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
-+...
T Consensus 107 Pla~t 111 (390)
T 4h3v_A 107 PLANT 111 (390)
T ss_dssp SSCSS
T ss_pred Ccccc
Confidence 88764
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0031 Score=61.52 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=44.2
Q ss_pred CcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+|-++-.|-.-.-=+.-|+. .| .+++.|||+|.+|.+++..|++. | .+|++++|+.+++++
T Consensus 96 ~g~l~G~NTD~~Gf~~~L~~-~~-----~k~vlvlGaGGaaraia~~L~~~-G-----~~v~V~nRt~~ka~~ 156 (269)
T 3phh_A 96 NDELVGYNTDALGFYLSLKQ-KN-----YQNALILGAGGSAKALACELKKQ-G-----LQVSVLNRSSRGLDF 156 (269)
T ss_dssp TTEEEEECCHHHHHHHHCC---------CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCTTHHH
T ss_pred CCEEEEecChHHHHHHHHHH-cC-----CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 56555555544333333333 22 46899999999999999999998 8 899999999887654
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0042 Score=61.02 Aligned_cols=65 Identities=17% Similarity=0.032 Sum_probs=45.4
Q ss_pred CcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhh
Q 012547 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (461)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (461)
+|-++-.|-.-.-=+.-|+.. | .+....++.|+|+|.+|.+++..|++. | . +|++++|+.+++++
T Consensus 96 ~g~l~G~NTD~~G~~~~L~~~-~-~~~~~k~vlvlGaGGaaraia~~L~~~-G-----~~~v~v~nRt~~ka~~ 161 (282)
T 3fbt_A 96 REGISGFNTDYIGFGKMLSKF-R-VEIKNNICVVLGSGGAARAVLQYLKDN-F-----AKDIYVVTRNPEKTSE 161 (282)
T ss_dssp SSCEEEECCHHHHHHHHHHHT-T-CCCTTSEEEEECSSTTHHHHHHHHHHT-T-----CSEEEEEESCHHHHHH
T ss_pred CCEEEeeCCcHHHHHHHHHHc-C-CCccCCEEEEECCcHHHHHHHHHHHHc-C-----CCEEEEEeCCHHHHHH
Confidence 565555554443333444432 2 223447899999999999999999998 8 5 89999999876553
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0023 Score=64.34 Aligned_cols=93 Identities=23% Similarity=0.218 Sum_probs=64.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||.|.+|..+|..+..- | .+|..|++...... ..
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~f-g-----~~v~~~d~~~~~~~----------------------------~~------- 180 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAF-G-----MKVLCYDVVKREDL----------------------------KE------- 180 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHHH----------------------------HH-------
T ss_pred cEEEEECcchHHHHHHHhhccc-C-----ceeeecCCccchhh----------------------------hh-------
Confidence 6899999999999999998766 7 89999998653110 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
..+. ..++++.++.||+|.+.+|- ..++.++ ++....+++ ++++|.++-|=.
T Consensus 181 ----------------------~~~~-~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~---~a~lIN~aRG~i 234 (334)
T 3kb6_A 181 ----------------------KGCV-YTSLDELLKESDVISLHVPYTKETHHMINEERISLMKD---GVYLINTARGKV 234 (334)
T ss_dssp ----------------------TTCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCT---TEEEEECSCGGG
T ss_pred ----------------------cCce-ecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCC---CeEEEecCcccc
Confidence 0122 24678889999999999994 3444443 222334555 688888887744
Q ss_pred cc
Q 012547 202 AE 203 (461)
Q Consensus 202 ~~ 203 (461)
.+
T Consensus 235 Vd 236 (334)
T 3kb6_A 235 VD 236 (334)
T ss_dssp BC
T ss_pred cc
Confidence 43
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0074 Score=60.59 Aligned_cols=40 Identities=13% Similarity=0.309 Sum_probs=31.3
Q ss_pred CCceEEEEC-ccHHHHHHHHHHHHhcCCCCC--CeeEEEEecCc
Q 012547 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIG-aGamG~alA~~La~~~G~~~~--~~~V~l~~r~~ 82 (461)
.+|||+|+| +|.+|+++|..|+.. |.+.. ...+.++|+++
T Consensus 2 ~~~kV~V~GaaG~VG~~la~~L~~~-~~~~e~~~~~l~L~Di~~ 44 (333)
T 5mdh_A 2 EPIRVLVTGAAGQIAYSLLYSIGNG-SVFGKDQPIILVLLDITP 44 (333)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTT-TTTCTTCCEEEEEECCGG
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhC-CCccccCCCEEEEEeCCC
Confidence 468999999 799999999999987 64321 12488999875
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.011 Score=61.66 Aligned_cols=68 Identities=22% Similarity=0.210 Sum_probs=45.8
Q ss_pred cccccccCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
||||...... ..--|.-+.-+|.++|..|.. ..-++|+|||.|.+|..+|..+..- | .+|+++++++.
T Consensus 214 Vnds~tK~~f-Dn~yG~~eslvdgI~Ratg~~-L~GKTVgVIG~G~IGr~vA~~lraf-G-----a~Viv~d~dp~ 281 (464)
T 3n58_A 214 VNDSVTKSKF-DNKYGCKESLVDGIRRGTDVM-MAGKVAVVCGYGDVGKGSAQSLAGA-G-----ARVKVTEVDPI 281 (464)
T ss_dssp CTTSHHHHTT-HHHHHHHHHHHHHHHHHHCCC-CTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHH
T ss_pred eccHhhhhhh-hhhhcchHHHHHHHHHhcCCc-ccCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEEeCCcc
Confidence 5776653221 111122233456777766533 2336899999999999999999876 7 89999998864
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0025 Score=64.66 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=34.9
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
...++|+|+|+|.+|.+++..+... | .+|++++|++++++
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~-G-----a~V~~~d~~~~~~~ 203 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGM-G-----AQVTILDVNHKRLQ 203 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHH
Confidence 3458999999999999999999988 8 89999999986554
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.008 Score=55.35 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=32.8
Q ss_pred Cce-EEEECc-cHHHHHHHHHHH-HhcCCCCCCeeEEEEecCch-hhh
Q 012547 43 PLR-IVGVGA-GAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGR-SVD 86 (461)
Q Consensus 43 ~mk-I~IIGa-GamG~alA~~La-~~~G~~~~~~~V~l~~r~~~-~~~ 86 (461)
||| |.|.|+ |.+|.+++..|+ +. | ++|++++|+++ .++
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~-g-----~~V~~~~r~~~~~~~ 45 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYT-D-----MHITLYGRQLKTRIP 45 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHC-C-----CEEEEEESSHHHHSC
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcC-C-----ceEEEEecCccccch
Confidence 455 999995 999999999999 77 7 99999999987 554
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0047 Score=64.06 Aligned_cols=68 Identities=24% Similarity=0.225 Sum_probs=46.2
Q ss_pred cccccccCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
||||..... ....-|.-+.-++-++|..+..- .-++|+|+|+|.+|..+|..+... | .+|.++++++.
T Consensus 187 vnds~tK~~-fDn~yGt~~s~~~gi~rat~~~L-~GktV~ViG~G~IGk~vA~~Lra~-G-----a~Viv~D~dp~ 254 (435)
T 3gvp_A 187 VNDSVTKQK-FDNLYCCRESILDGLKRTTDMMF-GGKQVVVCGYGEVGKGCCAALKAM-G-----SIVYVTEIDPI 254 (435)
T ss_dssp CTTCHHHHH-HHTHHHHHHHHHHHHHHHHCCCC-TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHH
T ss_pred ecchhhhhh-hhhhhhhHHHHHHHHHHhhCcee-cCCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEEeCChh
Confidence 566654321 11111333455677777765322 236899999999999999999877 7 78999998874
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0032 Score=64.89 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=34.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
...||+|||+|.+|..+|..+... | .+|++|++++++++.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~l-G-----a~V~v~D~~~~~l~~ 228 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRL-G-----AVVSATDVRPAAKEQ 228 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSTTHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHHH
Confidence 457999999999999999998877 8 899999999876553
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.013 Score=58.94 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=30.7
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+.++...++|+||+|+|...-++++.++. .. +..+|.++.-+
T Consensus 68 ~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~---~~---g~~vIDlSa~f 109 (337)
T 3dr3_A 68 DISEFSPGVDVVFLATAHEVSHDLAPQFL---EA---GCVVFDLSGAF 109 (337)
T ss_dssp SGGGTCTTCSEEEECSCHHHHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred CHHHHhcCCCEEEECCChHHHHHHHHHHH---HC---CCEEEEcCCcc
Confidence 44443378999999999988888777664 33 67788877544
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.022 Score=56.14 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=68.2
Q ss_pred hcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhccccc
Q 012547 36 MGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYL 114 (461)
Q Consensus 36 ~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l 114 (461)
|...-....+|+|+|+ |.||..++..+.+. | ++ .++..++.... ...
T Consensus 6 ~~~l~~~~~~vvV~Gasg~~G~~~~~~l~~~-g-----~~-~v~~VnP~~~g-------------------------~~i 53 (297)
T 2yv2_A 6 MAVLVDSETRVLVQGITGREGSFHAKAMLEY-G-----TK-VVAGVTPGKGG-------------------------SEV 53 (297)
T ss_dssp ---CCSTTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTT-------------------------CEE
T ss_pred hhHhhCCCCEEEEECCCCCHHHHHHHHHHhC-C-----Cc-EEEEeCCCCCC-------------------------ceE
Confidence 3444455678999998 99999999998887 7 66 45555542100 000
Q ss_pred chhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--C-CCEEEEcCCchhHHHHHHHHHHHhhccCCCC
Q 012547 115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--D-ADIVINGLPSTETKEVFEEISRYWKERITVP 191 (461)
Q Consensus 115 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~-aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~ 191 (461)
.++.+..+++++.. . +|+++++||+....+++++.... . -.
T Consensus 54 -------------------------------~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~~~v~ea~~~-G----i~ 97 (297)
T 2yv2_A 54 -------------------------------HGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEAVDA-G----IR 97 (297)
T ss_dssp -------------------------------TTEEEESSHHHHHHHCTTCCEEEECCCGGGHHHHHHHHHHT-T----CS
T ss_pred -------------------------------CCEeeeCCHHHHhhcCCCCCEEEEecCHHHHHHHHHHHHHC-C----CC
Confidence 03556677887765 5 99999999999999999887753 1 23
Q ss_pred EEEEEeecCccc
Q 012547 192 VIISLAKGVEAE 203 (461)
Q Consensus 192 iIIs~tkGi~~~ 203 (461)
.+|.++.|+...
T Consensus 98 ~vVi~t~G~~~~ 109 (297)
T 2yv2_A 98 LVVVITEGIPVH 109 (297)
T ss_dssp EEEECCCCCCHH
T ss_pred EEEEECCCCCHH
Confidence 466678898653
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.013 Score=57.27 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=30.5
Q ss_pred cCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 152 TNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 152 ~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
+|+++.+. +.|+|++|+|+....+++.... .. +..|+ +-|-+...
T Consensus 55 ~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al---~a---GkhVl-~EKPla~~ 101 (294)
T 1lc0_A 55 ISLEDALRSQEIDVAYICSESSSHEDYIRQFL---QA---GKHVL-VEYPMTLS 101 (294)
T ss_dssp CCHHHHHHCSSEEEEEECSCGGGHHHHHHHHH---HT---TCEEE-EESCSCSC
T ss_pred CCHHHHhcCCCCCEEEEeCCcHhHHHHHHHHH---HC---CCcEE-EeCCCCCC
Confidence 57777765 6799999999988777665543 33 44444 57766543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.014 Score=62.19 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=35.9
Q ss_pred HHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+.+++|+..+|..... ++|.|+|+|.+|..+|..|.+. | ++|.+++.+++.++.
T Consensus 332 ~~~l~~~~~~~~~~~~~-~~viIiG~G~~G~~la~~L~~~-g-----~~v~vid~d~~~~~~ 386 (565)
T 4gx0_A 332 KSQLAALEYLIGEAPED-ELIFIIGHGRIGCAAAAFLDRK-P-----VPFILIDRQESPVCN 386 (565)
T ss_dssp ---------------CC-CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSCCSSCC
T ss_pred HHHHHHHHHHhcCCCCC-CCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECChHHHhh
Confidence 35567788888766544 8999999999999999999998 7 999999999986653
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.026 Score=55.89 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=66.3
Q ss_pred CCceEEEE-Cc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGV-GA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~II-Ga-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
++.+|+|| |+ |.+|...+..|.+. | ++ .++..++..... ..
T Consensus 12 ~~~siaVV~Gasg~~G~~~~~~l~~~-G-----~~-~v~~VnP~~~g~-------------------------~i----- 54 (305)
T 2fp4_A 12 DKNTKVICQGFTGKQGTFHSQQALEY-G-----TN-LVGGTTPGKGGK-------------------------TH----- 54 (305)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTTC-------------------------EE-----
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHC-C-----Cc-EEEEeCCCcCcc-------------------------eE-----
Confidence 34568888 98 99999999999888 8 66 445555531100 00
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
.++.+..+++++.+ ++|+++++||+....++++++... . -..++.++
T Consensus 55 --------------------------~G~~vy~sl~el~~~~~vD~avI~vP~~~~~~~~~e~i~~-G----i~~iv~~t 103 (305)
T 2fp4_A 55 --------------------------LGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDA-E----VPLVVCIT 103 (305)
T ss_dssp --------------------------TTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHT-T----CSEEEECC
T ss_pred --------------------------CCeeeechHHHhhhcCCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEEC
Confidence 03455667888777 899999999999999999887652 1 13567788
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
.|+...
T Consensus 104 ~G~~~~ 109 (305)
T 2fp4_A 104 EGIPQQ 109 (305)
T ss_dssp CCCCHH
T ss_pred CCCChH
Confidence 888643
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0036 Score=63.78 Aligned_cols=95 Identities=11% Similarity=0.128 Sum_probs=58.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.+.||+|||+| ||...+..+++. . ++.++ -+++++.++++++.++ |
T Consensus 6 ~~~rv~VvG~G-~g~~h~~a~~~~-~---~~~elvav~~~~~~~a~~~a~~---------------------~------- 52 (372)
T 4gmf_A 6 PKQRVLIVGAK-FGEMYLNAFMQP-P---EGLELVGLLAQGSARSRELAHA---------------------F------- 52 (372)
T ss_dssp -CEEEEEECST-TTHHHHHTTSSC-C---TTEEEEEEECCSSHHHHHHHHH---------------------T-------
T ss_pred CCCEEEEEehH-HHHHHHHHHHhC-C---CCeEEEEEECCCHHHHHHHHHH---------------------h-------
Confidence 46899999999 898777766543 1 11454 4788988766542110 1
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhH----HHHHHHHHHHhhccCCCCEEEEE
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET----KEVFEEISRYWKERITVPVIISL 196 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~----~~vl~~i~~~l~~~~~~~iIIs~ 196 (461)
++...+|.++.+.+.|+++++||+... .++..+. +.. +.. |.+
T Consensus 53 --------------------------gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~~~a~~a---l~a---Gkh-Vl~ 99 (372)
T 4gmf_A 53 --------------------------GIPLYTSPEQITGMPDIACIVVRSTVAGGAGTQLARHF---LAR---GVH-VIQ 99 (372)
T ss_dssp --------------------------TCCEESSGGGCCSCCSEEEECCC--CTTSHHHHHHHHH---HHT---TCE-EEE
T ss_pred --------------------------CCCEECCHHHHhcCCCEEEEECCCcccchhHHHHHHHH---HHc---CCc-EEE
Confidence 233457788888889999999998754 3444333 343 333 447
Q ss_pred eecCcc
Q 012547 197 AKGVEA 202 (461)
Q Consensus 197 tkGi~~ 202 (461)
-|-+..
T Consensus 100 EKPl~~ 105 (372)
T 4gmf_A 100 EHPLHP 105 (372)
T ss_dssp ESCCCH
T ss_pred ecCCCH
Confidence 777644
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.016 Score=58.02 Aligned_cols=110 Identities=13% Similarity=0.090 Sum_probs=61.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++||+|+|+|.+|..++..|... . ..++ .+.+++.+.+.. ..+..+- ..| + ++
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~-~----~~elvav~d~~~~~~~~--------~~~~~g~--------~~~-~----~~ 55 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQ-D----DMELIGITKTKPDFEAY--------RAKELGI--------PVY-A----AS 55 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-T----TEEEEEEEESSCSHHHH--------HHHHTTC--------CEE-E----SS
T ss_pred CcEEEEEeEhHHHHHHHHHHhcC-C----CCEEEEEEcCCHHHHHH--------HHHhcCc--------ccc-c----cc
Confidence 36999999999999999998865 2 1454 456666544332 1111000 000 0 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+.. + +.+.+ ..+.+..|+++.+.++|+|++|+|.....+.... +++. +..|+ +.++.
T Consensus 56 ~~~-v---~~~~~-----------~~~~v~~d~~~l~~~vDvV~~aTp~~~h~~~a~~---~l~a---Gk~Vi-~sap~ 112 (334)
T 2czc_A 56 EEF-I---PRFEK-----------EGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPL---YEKA---GVKAI-FQGGE 112 (334)
T ss_dssp GGG-H---HHHHH-----------HTCCCSCBHHHHHTTCSEEEECCSTTHHHHHHHH---HHHH---TCEEE-ECTTS
T ss_pred ccc-c---eeccC-----------CceEEcCcHHHhccCCCEEEECCCccccHHHHHH---HHHc---CCceE-eeccc
Confidence 000 0 00000 0223456788877899999999999876665553 3444 44555 56554
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.014 Score=56.79 Aligned_cols=67 Identities=19% Similarity=0.049 Sum_probs=46.7
Q ss_pred cCcccccccchhHHhhHH-HHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDE-LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-++-.|-.-.--+.- |+.. |. +....++.|+|+|.+|.+++..|++. |. .+|++++|+.+++++
T Consensus 92 ~~g~l~G~NTD~~G~~~~lL~~~-~~-~l~~k~~lvlGaGg~~~aia~~L~~~-G~----~~v~i~~R~~~~a~~ 159 (272)
T 3pwz_A 92 EDGRIVAENFDGIGLLRDIEENL-GE-PLRNRRVLLLGAGGAVRGALLPFLQA-GP----SELVIANRDMAKALA 159 (272)
T ss_dssp ETTEEEEECCHHHHHHHHHHTTS-CC-CCTTSEEEEECCSHHHHHHHHHHHHT-CC----SEEEEECSCHHHHHH
T ss_pred cCCeEEEecCCHHHHHHHHHHHc-CC-CccCCEEEEECccHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence 356566666554443333 4332 21 22347899999999999999999998 71 389999999877654
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0064 Score=62.45 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=34.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
|+||+|+|+|.+|.+++..|++. |.+. .+|.+++|+.+++++
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~-g~~~--~~V~v~~r~~~~~~~ 42 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMN-REVF--SHITLASRTLSKCQE 42 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC-TTTC--CEEEEEESCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCCc--eEEEEEECCHHHHHH
Confidence 36999999999999999999987 6100 289999999887664
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0054 Score=62.77 Aligned_cols=117 Identities=17% Similarity=0.242 Sum_probs=72.9
Q ss_pred ceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~a-lA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
||+..+|+|++|.+ ++..|.++ | ++|++.++++..++++++++ .|...+. +
T Consensus 1 mkavhfGaGniGRGfig~~l~~~-g-----~~v~f~dv~~~~i~~Ln~~~-------------------~Y~V~~~---g 52 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADA-G-----IQLTFADVNQVVLDALNARH-------------------SYQVHVV---G 52 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHT-T-----CEEEEEESCHHHHHHHHHHS-------------------EEEEEEE---S
T ss_pred CcEEEECCCccchhhHHHHHHHc-C-----CeEEEEeCCHHHHHHHhcCC-------------------CEEEEEc---c
Confidence 79999999999955 55567777 7 89999999998877755432 1322110 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEe----cCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhc----cC-CCCEE
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVV----TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKE----RI-TVPVI 193 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t----~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~----~~-~~~iI 193 (461)
...- . . ...++.+. .+.-+++.++|+|..++.+...+.+...|...|.. +. +.-.|
T Consensus 53 ~~~~--------~---~----~v~~v~ai~s~~~~~~~~i~~adlitT~vG~~~l~~i~~~l~~~L~~R~~~~~~~plti 117 (382)
T 3h2z_A 53 ETEQ--------V---D----TVSGVNAVSSIGDDVVDLIAQVDLVTTAVGPVVLERIAPAIAKGLVKRKEQGNESPLNI 117 (382)
T ss_dssp SSEE--------E---E----EEESCEEEETTSSHHHHHHTTCSEEEECCCHHHHHHTHHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCcc--------e---E----EEEEEEEEeCcHHHHHHHHcCCCEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCcEE
Confidence 0000 0 0 00133331 12344678999999999998888888777765532 11 13357
Q ss_pred EEEeecCccc
Q 012547 194 ISLAKGVEAE 203 (461)
Q Consensus 194 Is~tkGi~~~ 203 (461)
++|-|-....
T Consensus 118 lsCeN~~~ng 127 (382)
T 3h2z_A 118 IACENMVRGT 127 (382)
T ss_dssp EECCSSTTHH
T ss_pred EECCCccchH
Confidence 8888766543
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.025 Score=55.71 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=67.3
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
...+|+|+|+ |.||..++..+.+. | ++ .++..++.... ...
T Consensus 12 ~~~~v~V~Gasg~~G~~~~~~l~~~-g-----~~-~V~~VnP~~~g-------------------------~~i------ 53 (294)
T 2yv1_A 12 ENTKAIVQGITGRQGSFHTKKMLEC-G-----TK-IVGGVTPGKGG-------------------------QNV------ 53 (294)
T ss_dssp TTCCEEEETTTSHHHHHHHHHHHHT-T-----CC-EEEEECTTCTT-------------------------CEE------
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhC-C-----Ce-EEEEeCCCCCC-------------------------ceE------
Confidence 4568999998 99999999998887 7 56 55555543110 000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.++.+..+++++.+ ++|+++++||+....+++++.... . -..+|.++.
T Consensus 54 -------------------------~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~~v~ea~~~-G----i~~vVi~t~ 103 (294)
T 2yv1_A 54 -------------------------HGVPVFDTVKEAVKETDANASVIFVPAPFAKDAVFEAIDA-G----IELIVVITE 103 (294)
T ss_dssp -------------------------TTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHT-T----CSEEEECCS
T ss_pred -------------------------CCEeeeCCHHHHhhcCCCCEEEEccCHHHHHHHHHHHHHC-C----CCEEEEECC
Confidence 03556678888777 899999999999999999887653 1 234666788
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
|+...
T Consensus 104 G~~~~ 108 (294)
T 2yv1_A 104 HIPVH 108 (294)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 98653
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.021 Score=56.94 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=42.7
Q ss_pred CcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecC---chhhh
Q 012547 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRP---GRSVD 86 (461)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~---~~~~~ 86 (461)
+|-++-.|-.-.-=+.-|+.. | .+....++.|+|+|.+|.+++..|++. | . +|++++|+ .++++
T Consensus 128 ~g~l~G~NTD~~Gf~~~L~~~-~-~~l~gk~~lVlGaGG~g~aia~~L~~~-G-----a~~V~i~nR~~~~~~~a~ 195 (315)
T 3tnl_A 128 DGVLTGHITDGTGYMRALKEA-G-HDIIGKKMTICGAGGAATAICIQAALD-G-----VKEISIFNRKDDFYANAE 195 (315)
T ss_dssp TTEEEEECCHHHHHHHHHHHT-T-CCCTTSEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEEECSSTTHHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHc-C-CCccCCEEEEECCChHHHHHHHHHHHC-C-----CCEEEEEECCCchHHHHH
Confidence 454443443333333334431 2 223346899999999999999999998 8 5 89999999 55444
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.011 Score=60.54 Aligned_cols=107 Identities=23% Similarity=0.244 Sum_probs=68.0
Q ss_pred hhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC----chhhhh-hhhhhHHHHHhhhhhhHHhhhh
Q 012547 35 LMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP----GRSVDR-ATAEHLFEVINSREDVLRRLIR 109 (461)
Q Consensus 35 ~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~----~~~~~~-~~~~~l~~~i~~~~~~~~~~~~ 109 (461)
+.|+ +-...||.|+|+|++|.++|..|... |. .+|++++|+ .++.+. ++. +.+.
T Consensus 185 i~g~-~l~~~kVVv~GAGaAG~~iAkll~~~-G~----~~I~v~Dr~Gli~~~R~~~~L~~--~k~~------------- 243 (388)
T 1vl6_A 185 LTEK-KIEEVKVVVNGIGAAGYNIVKFLLDL-GV----KNVVAVDRKGILNENDPETCLNE--YHLE------------- 243 (388)
T ss_dssp HHTC-CTTTCEEEEECCSHHHHHHHHHHHHH-TC----CEEEEEETTEECCTTSGGGCSSH--HHHH-------------
T ss_pred HhCC-CCCCcEEEEECCCHHHHHHHHHHHhC-CC----CeEEEEECCCcccCCCcccccCH--HHHH-------------
Confidence 4454 44568999999999999999999988 81 489999998 433110 100 0000
Q ss_pred cccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHHHHHHHHhhccC
Q 012547 110 RCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFEEISRYWKERI 188 (461)
Q Consensus 110 n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl~~i~~~l~~~~ 188 (461)
+.. .. .......+++++++++|++|=+.. .-..++++++++ +
T Consensus 244 ----~A~--------~~-------------------~~~~~~~~L~eav~~ADVlIG~Sap~l~t~emVk~Ma----~-- 286 (388)
T 1vl6_A 244 ----IAR--------IT-------------------NPERLSGDLETALEGADFFIGVSRGNILKPEWIKKMS----R-- 286 (388)
T ss_dssp ----HHH--------TS-------------------CTTCCCSCHHHHHTTCSEEEECSCSSCSCHHHHTTSC----S--
T ss_pred ----HHH--------hh-------------------hccCchhhHHHHHccCCEEEEeCCCCccCHHHHHhcC----C--
Confidence 000 00 011124678999999999888764 345666666654 3
Q ss_pred CCCEEEEEeecC
Q 012547 189 TVPVIISLAKGV 200 (461)
Q Consensus 189 ~~~iIIs~tkGi 200 (461)
+.+|+.++|-.
T Consensus 287 -~pIIfalSNPt 297 (388)
T 1vl6_A 287 -KPVIFALANPV 297 (388)
T ss_dssp -SCEEEECCSSS
T ss_pred -CCEEEEcCCCC
Confidence 46787777754
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.011 Score=58.64 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=34.3
Q ss_pred EEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 149 ~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.+.+|+++.+. +.|+|++|+|.....+++..... . +.. |.+-|-+...
T Consensus 54 ~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~---a---Gkh-Vl~EKPla~~ 103 (337)
T 3ip3_A 54 KKYNNWWEMLEKEKPDILVINTVFSLNGKILLEALE---R---KIH-AFVEKPIATT 103 (337)
T ss_dssp EECSSHHHHHHHHCCSEEEECSSHHHHHHHHHHHHH---T---TCE-EEECSSSCSS
T ss_pred cccCCHHHHhcCCCCCEEEEeCCcchHHHHHHHHHH---C---CCc-EEEeCCCCCC
Confidence 45688888775 48999999999888777666543 3 344 4478877654
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.038 Score=53.07 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=26.1
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 160 DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 160 ~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
++|+||-++++..+.+.++.... . +..+|..+.|+..+
T Consensus 45 ~~DvvIDfT~p~a~~~~~~~a~~---~---g~~~VigTTG~~~e 82 (245)
T 1p9l_A 45 NTEVVIDFTHPDVVMGNLEFLID---N---GIHAVVGTTGFTAE 82 (245)
T ss_dssp TCCEEEECSCTTTHHHHHHHHHH---T---TCEEEECCCCCCHH
T ss_pred CCcEEEEccChHHHHHHHHHHHH---c---CCCEEEcCCCCCHH
Confidence 68999988888777776655443 2 45566667787654
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.016 Score=58.47 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=26.7
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
++||+|+| .|.+|..+...|.++ . ..+|..+.++
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~-p----~~ev~~i~~s 42 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADH-P----MFELTALAAS 42 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC-S----SEEEEEEEEC
T ss_pred cceEEEECcCCHHHHHHHHHHhcC-C----CCEEEEEEcc
Confidence 37999999 799999999999865 3 2677766543
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0085 Score=62.49 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=34.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+++|.|+|+|.+|.+++..|++. | ++|.+++|+.++++.
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~-G-----~~V~v~~R~~~~a~~ 41 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDS-G-----IKVTVACRTLESAKK 41 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTT-T-----CEEEEEESSHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-c-----CEEEEEECCHHHHHH
Confidence 36899999999999999999988 7 889999999865543
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.033 Score=55.23 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=28.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRS 84 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~ 84 (461)
+++||+|||+|.+|..++..+.++.. ..+ |.++++++++
T Consensus 3 ~~irVaIIG~G~iG~~~~~~l~~~~~----~~elvav~d~~~~~ 42 (312)
T 1nvm_B 3 QKLKVAIIGSGNIGTDLMIKVLRNAK----YLEMGAMVGIDAAS 42 (312)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCS----SEEEEEEECSCTTC
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhhCc----CeEEEEEEeCChhh
Confidence 35799999999999999999976311 133 4467777654
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.018 Score=58.49 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=39.4
Q ss_pred HHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 32 ~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++..+|..+-.-++|+|+|+|+||..+|..|.+. | .+|.+++++.+.++
T Consensus 162 ~~~~~G~~~L~GktV~V~G~G~VG~~~A~~L~~~-G-----akVvv~D~~~~~l~ 210 (364)
T 1leh_A 162 AKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTE-G-----AKLVVTDVNKAAVS 210 (364)
T ss_dssp HHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHH
T ss_pred HHhhccccCCCcCEEEEECchHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 3455664344557999999999999999999998 8 89999999876544
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0064 Score=62.51 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=33.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
..+|+|+|+|.+|...+..+... | .+|++++++.+..+.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~-G-----a~V~v~D~~~~~~~~ 210 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSL-G-----AIVRAFDTRPEVKEQ 210 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCGGGHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHHH
Confidence 47999999999999999998877 8 789999999876543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.019 Score=53.62 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=33.0
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+|+|.|.|+ |.+|.+++..|++. | .++|++++|+++.++
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~-G----~~~V~~~~R~~~~~~ 62 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADK-Q----TIKQTLFARQPAKIH 62 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC-T----TEEEEEEESSGGGSC
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhC-C----CceEEEEEcChhhhc
Confidence 478999994 99999999999988 6 279999999986543
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.019 Score=57.37 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.7
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~ 65 (461)
|+||+|||+|.+|+.++..+.++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~ 24 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRK 24 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT
T ss_pred cEEEEEEeccHHHHHHHHHHHhh
Confidence 58999999999999999998764
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0078 Score=59.94 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=32.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.|||+|||+|..|.++|..|++. | ++|+++.++++
T Consensus 1 sm~V~IVGaGpaGl~~A~~L~~~-G-----~~v~v~Er~~~ 35 (412)
T 4hb9_A 1 SMHVGIIGAGIGGTCLAHGLRKH-G-----IKVTIYERNSA 35 (412)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCS
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 38999999999999999999999 8 99999998654
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.04 Score=54.79 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=44.5
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecC---chhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRP---GRSVD 86 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~---~~~~~ 86 (461)
.+|-++-.|-.-.-=+.-|+.. + .+....++.|+|+|.+|.+++..|++. | . +|++++|+ .++++
T Consensus 121 ~~g~l~G~NTD~~Gf~~~L~~~-~-~~l~gk~~lVlGAGGaaraia~~L~~~-G-----~~~v~v~nRt~~~~~~a~ 189 (312)
T 3t4e_A 121 DDGYLRGYNTDGTGHIRAIKES-G-FDMRGKTMVLLGAGGAATAIGAQAAIE-G-----IKEIKLFNRKDDFFEKAV 189 (312)
T ss_dssp ETTEEEEECHHHHHHHHHHHHT-T-CCCTTCEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEEECSSTHHHHHH
T ss_pred cCCEEEEeCCcHHHHHHHHHhc-C-CCcCCCEEEEECcCHHHHHHHHHHHHc-C-----CCEEEEEECCCchHHHHH
Confidence 3565555554443333444432 2 223446899999999999999999998 8 5 89999999 54444
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.033 Score=55.87 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=23.3
Q ss_pred cCHHHHhcCCCEEEEcCCchhHHHHHHHHH
Q 012547 152 TNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (461)
Q Consensus 152 ~dl~~av~~aDiIIiaVps~~~~~vl~~i~ 181 (461)
.+.++.+.++|+||.|+|.....+......
T Consensus 70 ~~~~~~~~~vDvV~~atp~~~~~~~a~~~l 99 (337)
T 1cf2_P 70 GTVDDMLDEADIVIDCTPEGIGAKNLKMYK 99 (337)
T ss_dssp EEHHHHHHTCSEEEECCSTTHHHHHHHHHH
T ss_pred CCHHHHhcCCCEEEECCCchhhHHHHHHHH
Confidence 456666678999999999988777666543
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.062 Score=51.45 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|.|||+|.+|+.++..|+.. |. .+++++|++.
T Consensus 29 ~~VlvvG~GglG~~va~~La~~-Gv----g~i~lvD~d~ 62 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGA-GV----GTLVLADDDD 62 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-TC----SEEEEECCCB
T ss_pred CcEEEEccCHHHHHHHHHHHHc-CC----CeEEEEeCCC
Confidence 6899999999999999999999 82 5899998875
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.028 Score=51.56 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=33.4
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
+|||.|.|+ |.+|.+++..|.+. | ++|++.+|+++..
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~ 41 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR-G-----FEVTAVVRHPEKI 41 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT-T-----CEEEEECSCGGGC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC-C-----CEEEEEEcCcccc
Confidence 589999995 99999999999999 8 9999999997654
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.032 Score=56.13 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..||.|||+|..|+.+|..|+.. |. .+++++|++.
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~a-GV----g~ItlvD~D~ 68 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAW-GV----RKITFVDNGT 68 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TC----CEEEEECCCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CC----CEEEEecCCE
Confidence 47899999999999999999999 83 6899999875
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.042 Score=55.19 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=25.9
Q ss_pred eEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHH
Q 012547 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (461)
Q Consensus 148 i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~ 181 (461)
+..+.+.++...++|+||.|+|.....+..+...
T Consensus 65 v~v~~~~e~l~~~vDvV~~aTp~~~s~~~a~~~~ 98 (340)
T 1b7g_O 65 IPVAGTVEDLIKTSDIVVDTTPNGVGAQYKPIYL 98 (340)
T ss_dssp CCCCCCHHHHHHHCSEEEECCSTTHHHHHHHHHH
T ss_pred cccccCHhHhhcCCCEEEECCCCchhHHHHHHHH
Confidence 4455677776678999999999998877765543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.06 Score=56.20 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=46.4
Q ss_pred HhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 27 ~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+.++++...+|..+....+|.|+|+|.+|..+|..|.+. ++|.+..+++++++.
T Consensus 219 ~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~-------~~v~iIE~d~~r~~~ 272 (461)
T 4g65_A 219 NHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQT-------YSVKLIERNLQRAEK 272 (461)
T ss_dssp TTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTT-------SEEEEEESCHHHHHH
T ss_pred chHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhc-------CceEEEecCHHHHHH
Confidence 456778888888887788999999999999999998644 899999999987765
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.026 Score=52.43 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=34.2
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.|+|.|.|+ |.+|.+++..|++. | ++|++.+|+++..+
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~-G-----~~V~~~~R~~~~~~ 59 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNK-G-----HEPVAMVRNEEQGP 59 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSGGGHH
T ss_pred CCeEEEECCCChHHHHHHHHHHhC-C-----CeEEEEECChHHHH
Confidence 379999998 99999999999999 8 99999999987554
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.013 Score=58.17 Aligned_cols=37 Identities=14% Similarity=-0.031 Sum_probs=32.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++|.|+|+|.+|..++..|.+. | + |.+++++++.++
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~-g-----~-v~vid~~~~~~~ 151 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGS-E-----V-FVLAEDENVRKK 151 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGS-C-----E-EEEESCGGGHHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhC-C-----c-EEEEeCChhhhh
Confidence 46899999999999999999888 7 8 999999987654
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.011 Score=53.03 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=30.0
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.|+|||||.-|.+.|..|++. | ++|+++++.+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~-G-----~~V~v~Ek~~ 35 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAA-G-----HQVHLFDKSR 35 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCC
Confidence 599999999999999999999 8 9999999865
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.016 Score=58.55 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=34.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
...+|.|+|+|.+|.+.+..+... | .+|++++|++++++.
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~-G-----a~V~v~dr~~~r~~~ 205 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGL-G-----AQVQIFDINVERLSY 205 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHH
Confidence 347999999999999999999888 8 799999999876654
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.029 Score=55.52 Aligned_cols=40 Identities=23% Similarity=0.417 Sum_probs=31.3
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~--~~~~V~l~~r~~ 82 (461)
++|||+|+|+ |.+|+.++..|... |++. ..++|.++++.+
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~-g~~~~~~~~ev~l~D~~~ 45 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAG-EMLGKDQPVILQLLEIPQ 45 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTT-TTTCTTCCEEEEEECCGG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC-CCCCCCCCCEEEEEeCCC
Confidence 4589999997 99999999999987 7320 013899999864
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.017 Score=58.78 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=33.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
...+|+|+|+|.+|.+.+..+... | .+|+++++++++.+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-G-----a~V~~~d~~~~~~~ 209 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRL-G-----AVVMATDVRAATKE 209 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCSTTHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 457999999999999999988877 8 78999999986554
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.11 Score=51.21 Aligned_cols=64 Identities=28% Similarity=0.357 Sum_probs=32.3
Q ss_pred ccCcccccccchhHHhhHHHHHhhcC----CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 13 SSNGLIHHTNGSLEERLDELRRLMGK----AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
||.---||..|---.|.--||. +|. ..-+..||.|||+|..|+.++..|+.. |. .+++++|.+.
T Consensus 3 ~~~~~~~~~~~~~y~r~i~L~~-~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~a-GV----G~i~lvD~D~ 70 (292)
T 3h8v_A 3 SSHHHHHHSSGLVPRGSMALKR-MGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRC-GI----GKLLLFDYDK 70 (292)
T ss_dssp ------------------------------CGGGGCEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCB
T ss_pred cccccccccCCCCchHhhcccc-cChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHc-CC----CEEEEECCCc
Confidence 3444456777766677666665 333 222347999999999999999999999 82 5899998875
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.036 Score=59.72 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=30.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..||.|||+|..|+.+|..|+.. |. .+++++|.+.
T Consensus 327 ~~kVLIVGaGGLGs~va~~La~a-GV----G~ItLvD~D~ 361 (598)
T 3vh1_A 327 NTKVLLLGAGTLGCYVSRALIAW-GV----RKITFVDNGT 361 (598)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TC----CEEEEECCSB
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCc
Confidence 47999999999999999999999 82 5899998763
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.089 Score=52.88 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=40.6
Q ss_pred HHhhHHHHHhhcCCCC---CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 26 EERLDELRRLMGKAEG---DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 26 ~~~~~~~~~~~~~~~~---~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++|.|.-.+++|...- ...+|+|||+|..|+.+|..|+.. |. ..++++|.+.
T Consensus 16 ~~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~-Gv----g~itlvD~d~ 70 (346)
T 1y8q_A 16 AAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILA-GV----KGLTMLDHEQ 70 (346)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCB
T ss_pred HHHHHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEECCC
Confidence 4577777777764332 236899999999999999999999 82 5899998764
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.055 Score=54.37 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=26.5
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
+|||+|+| .|.+|..+...|.+. . ..++..+.++
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~-p----~~elv~v~s~ 38 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSH-P----YLEVKQVTSR 38 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC-T----TEEEEEEBCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC-C----CcEEEEEECc
Confidence 47999999 599999999999866 3 2566665553
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.015 Score=55.62 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=32.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
+|||.|.|+|.+|+.++..|.+. | ++|++++|+.+.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 38 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQ-G-----HEVTGLRRSAQP 38 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECTTSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCccc
Confidence 47999999999999999999999 8 999999998753
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0093 Score=59.84 Aligned_cols=59 Identities=20% Similarity=0.113 Sum_probs=41.0
Q ss_pred cccccchhHHhhHHHHHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 18 IHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
.+|++..-.-. +|+++...|.. .+|+|.|.|+ |.+|.+++..|.+. | ++|++.+|+...
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~-~~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 65 (379)
T 2c5a_A 6 TNGTDYGAYTY-KELEREQYWPS-ENLKISITGAGGFIASHIARRLKHE-G-----HYVIASDWKKNE 65 (379)
T ss_dssp ---------CC-TTCCCCCSCTT-SCCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSCCS
T ss_pred cCCcchhhhhH-HHHhccccccc-cCCeEEEECCccHHHHHHHHHHHHC-C-----CeEEEEECCCcc
Confidence 44454443333 66777666655 5689999998 99999999999998 8 999999998653
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.03 Score=53.31 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=34.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+|||.|.|+|.+|+.++..|.+. | ++|++.+|+++..+
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~~ 42 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQ-G-----WRIIGTSRNPDQME 42 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGG-T-----CEEEEEESCGGGHH
T ss_pred cCcEEEECCcHHHHHHHHHHHHC-C-----CEEEEEEcChhhhh
Confidence 58999999999999999999999 8 99999999986544
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.027 Score=56.18 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=32.2
Q ss_pred CCCceEEEECccHH-HHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 41 GDPLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 41 ~~~mkI~IIGaGam-G~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
....+++|||+|.+ |..+|..|... | .+|++++|+..+
T Consensus 175 l~gk~vvVIG~G~iVG~~~A~~L~~~-g-----AtVtv~nR~~~~ 213 (320)
T 1edz_A 175 LYGKKCIVINRSEIVGRPLAALLAND-G-----ATVYSVDVNNIQ 213 (320)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTT-S-----CEEEEECSSEEE
T ss_pred CCCCEEEEECCCcchHHHHHHHHHHC-C-----CEEEEEeCchHH
Confidence 34579999999976 99999999988 7 789999998543
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.1 Score=54.84 Aligned_cols=56 Identities=20% Similarity=0.092 Sum_probs=43.3
Q ss_pred chhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 23 GSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
|.-+.-+|-+++..++. -.-++++|+|+|.+|.++|..|+.. | .+|.++++++..+
T Consensus 246 Gt~~sl~dgi~r~tg~~-L~GKtVvVtGaGgIG~aiA~~Laa~-G-----A~Viv~D~~~~~a 301 (488)
T 3ond_A 246 GCRHSLPDGLMRATDVM-IAGKVAVVAGYGDVGKGCAAALKQA-G-----ARVIVTEIDPICA 301 (488)
T ss_dssp HHHHHHHHHHHHHHCCC-CTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHH
T ss_pred cccHHHHHHHHHHcCCc-ccCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHH
Confidence 33344567777777652 2336899999999999999999998 8 8999999987543
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=94.65 E-value=0.051 Score=54.98 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=26.1
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 44 mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
+||+|+| .|.+|..+...|.+. . ..++..+...
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~-p----~~elvai~~~ 50 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANH-P----HFQVTLMTAD 50 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTC-S----SEEEEEEBCS
T ss_pred cEEEEECcCCHHHHHHHHHHHcC-C----CcEEEEEeCc
Confidence 7999999 799999999999876 3 2466666544
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.096 Score=52.27 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=20.7
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~ 65 (461)
++||+|||+|.||..++..+.+.
T Consensus 6 ~irvgIiG~G~VG~~~~~~l~~~ 28 (331)
T 3c8m_A 6 TINLSIFGLGNVGLNLLRIIRSF 28 (331)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH
T ss_pred EEeEEEEecCHHHHHHHHHHHhC
Confidence 47999999999999999998765
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.14 Score=55.20 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=31.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..||.|||+|..|+.+|..|+.. |. .+++++|.+.
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~a-GV----G~ItLvD~D~ 360 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAW-GV----RKITFVDNGT 360 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TC----CEEEEECCCB
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCC
Confidence 37899999999999999999999 83 6899999875
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.037 Score=55.47 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.9
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~ 65 (461)
++||+|||+|.+|..++..+.++
T Consensus 3 ~irvgIiG~G~VG~~~~~~l~~~ 25 (332)
T 2ejw_A 3 ALKIALLGGGTVGSAFYNLVLER 25 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT
T ss_pred eeEEEEEcCCHHHHHHHHHHHhC
Confidence 47999999999999999998875
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.11 Score=54.21 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=29.8
Q ss_pred EEecCHHHHhc--CCCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 149 KVVTNLQEAVW--DADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 149 ~~t~dl~~av~--~aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
..++|+++.+. +.|+|++++|+ ....+.+.+ .+.. +..|++.-|++
T Consensus 65 ~~~~d~~ell~d~diDvVve~tp~~~~h~~~~~~---AL~a---GKhVvtenkal 113 (444)
T 3mtj_A 65 PLTTNPFDVVDDPEIDIVVELIGGLEPARELVMQ---AIAN---GKHVVTANKHL 113 (444)
T ss_dssp CEESCTHHHHTCTTCCEEEECCCSSTTHHHHHHH---HHHT---TCEEEECCHHH
T ss_pred cccCCHHHHhcCCCCCEEEEcCCCchHHHHHHHH---HHHc---CCEEEECCccc
Confidence 34677887775 47999999996 555555433 2344 56777666643
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.058 Score=51.44 Aligned_cols=38 Identities=24% Similarity=0.142 Sum_probs=32.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|||.|.|+ |.+|.+++..|.+..| ++|++.+|+++..+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g-----~~V~~~~R~~~~~~ 39 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI-----DHFHIGVRNVEKVP 39 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC-----TTEEEEESSGGGSC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC-----CcEEEEECCHHHHH
Confidence 78999996 9999999999987514 89999999986543
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.044 Score=53.35 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=33.0
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
+|+|.|.|+ |.+|++++..|.+. | ++|++.+|+.+..
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~ 50 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAA-G-----HDLVLIHRPSSQI 50 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEECTTSCG
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEecChHhh
Confidence 479999996 99999999999998 8 9999999987644
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.067 Score=54.02 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=26.9
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+.++|+||+|+|.....++++.+ .. +..+|.++.-+
T Consensus 77 ~~~~~DvVf~alg~~~s~~~~~~~----~~---G~~vIDlSa~~ 113 (352)
T 2nqt_A 77 VLGGHDAVFLALPHGHSAVLAQQL----SP---ETLIIDCGADF 113 (352)
T ss_dssp HHTTCSEEEECCTTSCCHHHHHHS----CT---TSEEEECSSTT
T ss_pred HhcCCCEEEECCCCcchHHHHHHH----hC---CCEEEEECCCc
Confidence 466899999999998777666555 22 56788777544
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.042 Score=49.86 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=33.3
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|||.|.|+ |.+|.+++..|++. | ++|++++|+++..+
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~~ 38 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR-G-----HEVTAIVRNAGKIT 38 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCSHHHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhC-C-----CEEEEEEcCchhhh
Confidence 79999996 99999999999999 8 99999999986543
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.041 Score=56.39 Aligned_cols=111 Identities=25% Similarity=0.283 Sum_probs=67.4
Q ss_pred hhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhccccc
Q 012547 35 LMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYL 114 (461)
Q Consensus 35 ~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l 114 (461)
+.|+ .....||.|+|+|+.|.++|..+... |. .+|+++|++.-..+. ..++| +.. ...+
T Consensus 181 l~g~-~l~d~kVVi~GAGaAG~~iA~ll~~~-Ga----~~I~v~D~~Gli~~~-R~~~L----~~~----------k~~f 239 (398)
T 2a9f_A 181 LLKK-SLDEVSIVVNGGGSAGLSITRKLLAA-GA----TKVTVVDKFGIINEQ-EAAQL----APH----------HLDI 239 (398)
T ss_dssp TTTC-CTTSCEEEEECCSHHHHHHHHHHHHH-TC----CEEEEEETTEECCTT-CCCSC----CC-------------CH
T ss_pred HhCC-CCCccEEEEECCCHHHHHHHHHHHHc-CC----CeEEEEECCCcccCC-ccccc----hHH----------HHHH
Confidence 3444 45568999999999999999999988 81 399999998411000 00000 000 0000
Q ss_pred chhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC-CchhHHHHHHHHHHHhhccCCCCEE
Q 012547 115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL-PSTETKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 115 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV-ps~~~~~vl~~i~~~l~~~~~~~iI 193 (461)
.... + ......+++++++++|++|=+. |--..++++++++ + +.+|
T Consensus 240 a~~~--------------------~-------~~~~~~~L~eav~~ADV~IG~Sapgl~T~EmVk~Ma----~---~pII 285 (398)
T 2a9f_A 240 AKVT--------------------N-------REFKSGTLEDALEGADIFIGVSAPGVLKAEWISKMA----A---RPVI 285 (398)
T ss_dssp HHHH--------------------S-------CTTCCCSCSHHHHTTCSEEECCSTTCCCHHHHHTSC----S---SCEE
T ss_pred hhcc--------------------C-------cccchhhHHHHhccCCEEEecCCCCCCCHHHHHhhC----C---CCEE
Confidence 0000 0 0111356788999999876654 3346777777765 3 5789
Q ss_pred EEEeecC
Q 012547 194 ISLAKGV 200 (461)
Q Consensus 194 Is~tkGi 200 (461)
+.++|-.
T Consensus 286 falsNPt 292 (398)
T 2a9f_A 286 FAMANPI 292 (398)
T ss_dssp EECCSSS
T ss_pred EECCCCC
Confidence 9899875
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.18 Score=50.70 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=31.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..+|.|||+|..|+.+|..|+.. |. .+++++|++.
T Consensus 118 ~~~VlvvG~GglGs~va~~La~a-Gv----g~i~lvD~D~ 152 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATS-GI----GEIILIDNDQ 152 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHH-TC----SEEEEEECCB
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CC----CeEEEECCCc
Confidence 46899999999999999999999 82 5899999875
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.16 Score=51.00 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=25.5
Q ss_pred CCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012547 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (461)
Q Consensus 42 ~~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~ 79 (461)
+++||+|+| .|.+|..+...|... . ..++..+.
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~-p----~~elvai~ 36 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKH-P----YLELVKVS 36 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTC-S----SEEEEEEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhC-C----CcEEEEEe
Confidence 358999999 699999999998865 2 25666554
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.068 Score=51.59 Aligned_cols=45 Identities=18% Similarity=0.082 Sum_probs=32.1
Q ss_pred EEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 149 KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 149 ~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+++|+++.+.++|+|+.|.++..+++.+.++ |.. +.-+|+.+-|
T Consensus 49 ~a~~d~d~lla~pD~VVe~A~~~av~e~~~~i---L~a---G~dvv~~S~g 93 (253)
T 1j5p_A 49 VVRLDEFQVPSDVSTVVECASPEAVKEYSLQI---LKN---PVNYIIISTS 93 (253)
T ss_dssp SEECSSCCCCTTCCEEEECSCHHHHHHHHHHH---TTS---SSEEEECCGG
T ss_pred eeeCCHHHHhhCCCEEEECCCHHHHHHHHHHH---HHC---CCCEEEcChh
Confidence 45677777777899999999888777655444 454 5567766655
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.042 Score=55.27 Aligned_cols=36 Identities=19% Similarity=0.456 Sum_probs=32.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..++|+|||+|..|.++|..|++. | .+|+++++++.
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 60 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQN-G-----IDVSVYERDND 60 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 457899999999999999999999 8 89999998754
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.1 Score=49.41 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=32.3
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+-..++|.|||+|.+|..-+..|.+. | .+|++++.+.
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~-G-----A~VtVvap~~ 64 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQE-G-----AAITVVAPTV 64 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGG-C-----CCEEEECSSC
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCC
Confidence 33447999999999999999999999 8 8999998764
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.047 Score=54.11 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=33.1
Q ss_pred ccccchhHHhhHHHHHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 19 HHTNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
||.-|.+++--... ..-.+|||.|.|+ |.+|++++..|.+..| ++|++++|+.+..+
T Consensus 6 ~~~~~~~~~~~~~~------~~m~~~~vlVtGatG~iG~~l~~~L~~~~g-----~~V~~~~r~~~~~~ 63 (372)
T 3slg_A 6 HHHMGTLEAQTQGP------GSMKAKKVLILGVNGFIGHHLSKRILETTD-----WEVFGMDMQTDRLG 63 (372)
T ss_dssp -----------------------CCCEEEEESCSSHHHHHHHHHHHHHSS-----CEEEEEESCCTTTG
T ss_pred cccccchhhhhcCC------cccCCCEEEEECCCChHHHHHHHHHHhCCC-----CEEEEEeCChhhhh
Confidence 45566666543332 2223579999995 9999999999987624 89999999876543
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.051 Score=58.13 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=38.2
Q ss_pred hHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
...|-+.+.+|.. ....|.|||+|..|.++|..|++. | .+|.++.+..
T Consensus 18 ~~~r~~~~~~m~~----~~~DVvVIGgGi~G~~~A~~La~r-G-----~~V~LlE~~~ 65 (571)
T 2rgh_A 18 NKTRQDSIQKMQQ----EELDLLIIGGGITGAGVAVQAAAS-G-----IKTGLIEMQD 65 (571)
T ss_dssp HHHHHHHHHHHHH----SCBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred ccCHHHHHHhccc----CCCCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 4556666666542 235799999999999999999999 8 8999998753
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.06 Score=51.65 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=31.7
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+|+|.|.|+ |.+|.+++..|.+. | ++|++.+|+..
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~l~R~~~ 39 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL-G-----HPTFLLVREST 39 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC-C-----CCEEEEECCcc
Confidence 578999997 99999999999998 8 89999999853
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.093 Score=53.55 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=28.7
Q ss_pred hcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 158 v~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+.++|+||+|+|...-+++..++. .. +..+|.++.-+
T Consensus 91 ~~~~Dvvf~alp~~~s~~~~~~~~---~~---G~~VIDlSa~f 127 (381)
T 3hsk_A 91 FLECDVVFSGLDADVAGDIEKSFV---EA---GLAVVSNAKNY 127 (381)
T ss_dssp GGGCSEEEECCCHHHHHHHHHHHH---HT---TCEEEECCSTT
T ss_pred cccCCEEEECCChhHHHHHHHHHH---hC---CCEEEEcCCcc
Confidence 578999999999998888877764 33 57788877544
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.051 Score=49.57 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=33.5
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|||.|.|+ |.+|.+++..|++. | ++|++++|+++..+
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~~ 38 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR-G-----HEVLAVVRDPQKAA 38 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC-C-----CEEEEEEecccccc
Confidence 78999998 99999999999999 8 99999999976543
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.048 Score=54.91 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=32.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..++|+|||+|..|.++|..|++. | ++|+++++...
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~-G-----~~V~v~E~~~~ 57 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQS-G-----IDCDVYEAVKE 57 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCCC
Confidence 347899999999999999999999 8 89999999764
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.24 Score=51.39 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=30.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||.|||+|..|+.++..|+.. |. .+++++|.+.
T Consensus 41 ~~VlvvG~GGlGs~va~~La~a-Gv----g~i~ivD~D~ 74 (434)
T 1tt5_B 41 CKVLVIGAGGLGCELLKNLALS-GF----RQIHVIDMDT 74 (434)
T ss_dssp CCEEEECSSTHHHHHHHHHHHT-TC----CCEEEEECCB
T ss_pred CEEEEECcCHHHHHHHHHHHHc-CC----CEEEEEcCCE
Confidence 5899999999999999999999 82 5899998764
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.042 Score=56.29 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++|.|||+|..|.++|..|++. | ++|+++++..
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~-G-----~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQH-D-----VDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHT-T-----CEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHC-C-----CeEEEEcCCC
Confidence 5899999999999999999999 8 9999999875
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.071 Score=51.09 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=31.4
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+|+|.|.|+ |.+|.+++..|.+. | ++|++.+|+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKA-G-----NPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHH-T-----CCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence 478999997 99999999999999 8 8999999986
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.07 Score=51.69 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=31.4
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|+|.|.|+ |.+|.+++..|.+. | ++|++.+|+.
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~ 38 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSF-S-----HPTFIYARPL 38 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHT-T-----CCEEEEECCC
T ss_pred cccEEEEEcCCchhHHHHHHHHHhC-C-----CcEEEEECCc
Confidence 3578999996 99999999999998 8 8999999986
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.04 Score=56.63 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..+|+|||+|..|.+.|..|++. | .+|+++++++.
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~-G-----~~V~llEk~~~ 61 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKR-G-----RRVLVIDHARA 61 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 46899999999999999999999 8 89999998864
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.24 Score=49.78 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.7
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~ 65 (461)
++||+|+|+|.+|..++..|..+
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~ 24 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQ 24 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHS
T ss_pred ceEEEEECCCHHHHHHHHHHHhC
Confidence 36999999999999999998865
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.86 E-value=0.081 Score=50.87 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=31.3
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+|+|.|.|+ |.+|.+++..|.+. | ++|++.+|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~ 38 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL-G-----HPTYVLFRPE 38 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCSC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence 578999996 99999999999998 8 8999999985
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.048 Score=54.00 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=31.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
...+|+|||+|..|.+.|..|++. | .+|+++++..
T Consensus 16 ~~~dvvIIGgG~~Gl~~A~~La~~-G-----~~V~llE~~~ 50 (382)
T 1ryi_A 16 RHYEAVVIGGGIIGSAIAYYLAKE-N-----KNTALFESGT 50 (382)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCC
Confidence 346899999999999999999999 8 8999999864
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.092 Score=48.52 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=32.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCe--eEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~--~V~l~~r~~~~~~ 86 (461)
|+|.|.|+ |.+|.+++..|++. | + +|.+++|+++..+
T Consensus 19 ~~vlVtGasg~iG~~l~~~L~~~-G-----~~~~V~~~~r~~~~~~ 58 (242)
T 2bka_A 19 KSVFILGASGETGRVLLKEILEQ-G-----LFSKVTLIGRRKLTFD 58 (242)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHH-T-----CCSEEEEEESSCCCCC
T ss_pred CeEEEECCCcHHHHHHHHHHHcC-C-----CCCEEEEEEcCCCCcc
Confidence 68999995 99999999999999 8 7 9999999876443
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=93.74 E-value=0.16 Score=51.63 Aligned_cols=38 Identities=16% Similarity=0.038 Sum_probs=28.5
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+.++|+||+|+|...-++.+..+. .. +..+|.++.-+
T Consensus 61 ~~~~~Dvvf~a~~~~~s~~~a~~~~---~~---G~~vIDlSa~~ 98 (366)
T 3pwk_A 61 AFEGVDIALFSAGSSTSAKYAPYAV---KA---GVVVVDNTSYF 98 (366)
T ss_dssp TTTTCSEEEECSCHHHHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred HhcCCCEEEECCChHhHHHHHHHHH---HC---CCEEEEcCCcc
Confidence 3578999999999888777776654 33 57788877544
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.36 Score=51.36 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=40.5
Q ss_pred HhhHHHHHhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 27 ERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 27 ~~~~~~~~~~~~~~~~---~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+|.+.-.+++|...-. ..||.|||+|..|+.++..|+.. |. ..++++|.+.
T Consensus 13 ~rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~a-GV----g~itlvD~D~ 66 (531)
T 1tt5_A 13 QKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLP-GI----GSFTIIDGNQ 66 (531)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTT-TC----SEEEEECCCB
T ss_pred HHhhHHHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 4777766777644322 36899999999999999999999 83 5899999775
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.094 Score=50.57 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=31.1
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+|||.|.|+ |.+|+.++..|.+. | ++|++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~ 36 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKND-G-----NTPIILTRSI 36 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEeCCC
Confidence 479999995 99999999999999 8 8999999984
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.071 Score=47.17 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++|+|||+|..|..+|..|++. | .+|+++++.+
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~-g-----~~v~lie~~~ 34 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARA-G-----LKVLVLDGGR 34 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 5899999999999999999998 8 8999999876
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.14 Score=51.71 Aligned_cols=37 Identities=30% Similarity=0.296 Sum_probs=28.4
Q ss_pred hcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 158 v~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+.++|+||+|+|...-+++...+. .. +..+|.++.-+
T Consensus 77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~---G~~vIDlSa~~ 113 (359)
T 4dpk_A 77 MDDVDIIFSPLPQGAAGPVEEQFA---KE---GFPVISNSPDH 113 (359)
T ss_dssp CTTCCEEEECCCTTTHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HC---CCEEEEcCCCc
Confidence 578999999999998888777654 33 57788877543
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.14 Score=51.71 Aligned_cols=37 Identities=30% Similarity=0.296 Sum_probs=28.4
Q ss_pred hcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 158 v~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+.++|+||+|+|...-+++...+. .. +..+|.++.-+
T Consensus 77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~---G~~vIDlSa~~ 113 (359)
T 4dpl_A 77 MDDVDIIFSPLPQGAAGPVEEQFA---KE---GFPVISNSPDH 113 (359)
T ss_dssp CTTCCEEEECCCTTTHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HC---CCEEEEcCCCc
Confidence 578999999999998888777654 33 57788877543
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.17 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.7
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~ 65 (461)
++||+|||+|.||+.++..|.++
T Consensus 4 ~irVgIiG~G~VG~~~~~~L~~~ 26 (325)
T 3ing_A 4 EIRIILMGTGNVGLNVLRIIDAS 26 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH
T ss_pred eEEEEEEcCcHHHHHHHHHHHhc
Confidence 47999999999999999999763
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.076 Score=50.98 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=31.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|||.|.|+ |.+|+.++..|.+. | |+|+...|++.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~-G-----~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNAR-G-----HEVTLVSRKPG 35 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCCC
Confidence 89999998 99999999999999 8 99999999864
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.19 Score=52.71 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=30.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++||.|||+|.+|++++..++++ .-+.. .+|++.+.+..
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~-~dv~~-~~I~vaD~~~~ 51 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEK-FDIKP-SQVTIIAAEGT 51 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHH-BCCCG-GGEEEEESSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHhC-CCCce-eEEEEeccchh
Confidence 37999999999999999999998 31110 26888877654
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.092 Score=51.85 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
...|+|||+|.+|.+.|..|++. | .+|+++++..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~-G-----~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARK-G-----YSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeccC
Confidence 46899999999999999999999 8 8999999753
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.17 Score=50.13 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=31.4
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~a-lA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++||.|||.|..|.+ +|..|.+. | ++|+++|++.
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~-G-----~~V~~~D~~~ 38 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEA-G-----FEVSGCDAKM 38 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHT-T-----CEEEEEESSC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhC-C-----CEEEEEcCCC
Confidence 4689999999999995 89999998 8 9999999875
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.18 Score=48.76 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=31.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++|.|.|+ |.+|.+++..|.+. | ++|++.+|+.+
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~l~R~~~ 46 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL-G-----HPTYVFTRPNS 46 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT-T-----CCEEEEECTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHC-C-----CcEEEEECCCC
Confidence 48999996 99999999999998 8 89999999874
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.071 Score=55.95 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=32.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..++|.|||+|..|.++|..|++. | .+|.++++.+.
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~~-G-----~~v~vlE~~~~ 45 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRLA-G-----VEVVVLERLVE 45 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 346799999999999999999999 8 89999998764
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.12 Score=50.47 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=28.0
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
-.++.|||.|. +|..+|..|... | .+|+++.++
T Consensus 150 Gk~vvVvG~s~iVG~plA~lL~~~-g-----AtVtv~~~~ 183 (276)
T 3ngx_A 150 ENTVTIVNRSPVVGRPLSMMLLNR-N-----YTVSVCHSK 183 (276)
T ss_dssp SCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred CCEEEEEcCChHHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 36899999985 899999999988 7 889988543
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.12 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDS 65 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~ 65 (461)
+++||+|||+|.||..++..+.+.
T Consensus 3 k~i~vgIiG~G~VG~~~~~~l~~~ 26 (358)
T 1ebf_A 3 KVVNVAVIGAGVVGSAFLDQLLAM 26 (358)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHC
T ss_pred ceEEEEEEecCHHHHHHHHHHHhc
Confidence 458999999999999999999875
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=93.11 E-value=0.89 Score=49.34 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||.|||+|..|+.++..|+.. |. ..++++|.+.
T Consensus 18 s~VlVVGaGGLGsevak~La~a-GV----G~ItlvD~D~ 51 (640)
T 1y8q_B 18 GRVLVVGAGGIGCELLKNLVLT-GF----SHIDLIDLDT 51 (640)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TC----CEEEEEECCB
T ss_pred CeEEEECcCHHHHHHHHHHHHc-CC----CeEEEecCCE
Confidence 5899999999999999999999 83 5899999875
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.069 Score=52.36 Aligned_cols=33 Identities=27% Similarity=0.599 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHH---hcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~---~~G~~~~~~~V~l~~r~~ 82 (461)
++|+|||+|..|.+.|..|++ . | ++|++++++.
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~-G-----~~V~v~Ek~~ 37 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSG-P-----LYLAVWDKAD 37 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-C-C-----EEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhccC-C-----ceEEEEECCC
Confidence 589999999999999999999 7 7 8999998763
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.082 Score=53.44 Aligned_cols=33 Identities=33% Similarity=0.422 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|+|+|||+|..|.+.|..|++. | .+|+++.++.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~-G-----~~V~vlE~~~ 33 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARN-G-----HEIIVLEKSA 33 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 6899999999999999999999 8 8999998864
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.13 Score=50.64 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=31.1
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+|+|.|.|+ |.+|.+++..|.+. | ++|++.+|+.
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~-g-----~~V~~l~R~~ 44 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDA-H-----RPTYILARPG 44 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHT-T-----CCEEEEECSS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHC-C-----CCEEEEECCC
Confidence 468999998 99999999999998 8 8999999987
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=0.097 Score=53.09 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~ 82 (461)
...|.|||+|..|.+.|..|++. | . +|++++++.
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~-G-----~~~V~vlE~~~ 40 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARR-G-----YTNVTVLDPYP 40 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-C-----CCcEEEEeCCC
Confidence 45799999999999999999999 8 8 899998875
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.076 Score=52.18 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=30.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
-|+|||+|..|++.|..|++. | ++|+++.+.++
T Consensus 6 DViIVGaGpaGl~~A~~La~~-G-----~~V~v~Er~~~ 38 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKY-G-----LKTLMIEKRPE 38 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 399999999999999999999 8 99999998754
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=92.86 E-value=0.17 Score=49.15 Aligned_cols=65 Identities=18% Similarity=0.012 Sum_probs=46.2
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-++.+|-...--+.-|++. +. +-..+++.|+|+|.+|.++|..|++. + +|++++|+.++++.
T Consensus 101 ~~g~l~g~nTd~~G~~~~L~~~-~~-~l~~k~vlV~GaGgiG~aia~~L~~~------G-~V~v~~r~~~~~~~ 165 (287)
T 1nvt_A 101 EDGKAIGYNTDGIGARMALEEE-IG-RVKDKNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEA 165 (287)
T ss_dssp ETTEEEEECCHHHHHHHHHHHH-HC-CCCSCEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHH
T ss_pred eCCEEEEecCCHHHHHHHHHHh-CC-CcCCCEEEEECchHHHHHHHHHHHHC------C-CEEEEECCHHHHHH
Confidence 3565566665555555555542 22 22346899999999999999999977 4 89999999876654
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.19 Score=49.31 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=27.9
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
-.++.|||.|. +|..+|..|... | ..|++..++
T Consensus 160 Gk~vvVvGrs~iVG~p~A~lL~~~-g-----AtVtv~h~~ 193 (285)
T 3p2o_A 160 GKDAVIIGASNIVGRPMATMLLNA-G-----ATVSVCHIK 193 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 37899999877 699999999988 7 789888543
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.27 Score=49.10 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=25.6
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012547 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (461)
Q Consensus 43 ~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~ 79 (461)
+|||+|+| .|.+|..+...|.++ + + +..++..+.
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~-~-~-p~~elv~i~ 37 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQER-E-F-PVDELFLLA 37 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT-T-C-CEEEEEEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcC-C-C-CCEEEEEEE
Confidence 58999999 899999999998876 3 1 114565554
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.088 Score=48.11 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=32.6
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 44 mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
|||.|.| +|.+|.+++..|++. | ++|++.+|+.+..
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~ 37 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT-D-----YQIYAGARKVEQV 37 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS-S-----CEEEEEESSGGGS
T ss_pred CeEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCccch
Confidence 7999999 599999999999998 8 9999999998644
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.094 Score=52.72 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|+|.|||+|..|.+.|..|+++ | ++|+++.++.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~-G-----~~V~vlE~~~ 33 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKA-G-----HEVEVFERLP 33 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CceEEEeCCC
Confidence 6899999999999999999999 8 9999998865
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.19 Score=48.64 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=34.0
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+++.|+| +|.+|.+++..|++. | .+|++++|+.+.+++
T Consensus 119 gk~vlVtGaaGGiG~aia~~L~~~-G-----~~V~i~~R~~~~~~~ 158 (287)
T 1lu9_A 119 GKKAVVLAGTGPVGMRSAALLAGE-G-----AEVVLCGRKLDKAQA 158 (287)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEECCHHHHHH
Confidence 36899999 899999999999999 8 789999999766553
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.11 Score=49.52 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=30.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
+++|.|||+|.-|.+.|..|++. | ++|++++++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~ 47 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARY-M-----LKTLVIGET 47 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESS
T ss_pred ccCEEEECccHHHHHHHHHHHHC-C-----CcEEEEecc
Confidence 46899999999999999999999 8 899999986
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.14 Score=45.75 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=32.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
|+|.|.|+ |.+|.+++..|.+. | ++|++++|+++..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~-g-----~~V~~~~r~~~~~ 40 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA-G-----YEVTVLVRDSSRL 40 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCGGGS
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC-C-----CeEEEEEeChhhc
Confidence 79999998 99999999999999 8 9999999987643
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=92.59 E-value=0.2 Score=49.04 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=27.6
Q ss_pred CCceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 42 DPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 42 ~~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
.-.++.|||.|. +|..+|..|... | ..|++..+
T Consensus 160 ~Gk~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~hs 193 (285)
T 3l07_A 160 EGAYAVVVGASNVVGKPVSQLLLNA-K-----ATVTTCHR 193 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECT
T ss_pred CCCEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeC
Confidence 347899999887 799999999988 7 78888754
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=92.58 E-value=0.24 Score=51.62 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=61.1
Q ss_pred CceEEEECcc----HHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 43 PLRIVGVGAG----AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 43 ~mkI~IIGaG----amG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
+.+|+|||++ .+|..+...|.+. | ...|..++...+.+ .
T Consensus 8 p~siAVvGas~~~~~~g~~v~~~l~~~-g----~~~v~pVnP~~~~i-----------------------------~--- 50 (457)
T 2csu_A 8 PKGIAVIGASNDPKKLGYEVFKNLKEY-K----KGKVYPVNIKEEEV-----------------------------Q--- 50 (457)
T ss_dssp CSEEEEETCCSCTTSHHHHHHHHHTTC-C----SSEEEEECSSCSEE-----------------------------T---
T ss_pred CCeEEEECcCCCCCchHHHHHHHHHHc-C----CCEEEEECCCCCeE-----------------------------C---
Confidence 5789999998 7899999988765 4 15665555442111 0
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
++.+..+++++....|+++++||+....++++++... . -..++.++.
T Consensus 51 ----------------------------G~~~y~sl~~lp~~~Dlavi~vp~~~~~~~v~e~~~~-G----i~~vv~~s~ 97 (457)
T 2csu_A 51 ----------------------------GVKAYKSVKDIPDEIDLAIIVVPKRFVKDTLIQCGEK-G----VKGVVIITA 97 (457)
T ss_dssp ----------------------------TEECBSSTTSCSSCCSEEEECSCHHHHHHHHHHHHHH-T----CCEEEECCC
T ss_pred ----------------------------CEeccCCHHHcCCCCCEEEEecCHHHHHHHHHHHHHc-C----CCEEEEecC
Confidence 1223344444445789999999999999999988753 2 235677888
Q ss_pred cCc
Q 012547 199 GVE 201 (461)
Q Consensus 199 Gi~ 201 (461)
|+.
T Consensus 98 G~~ 100 (457)
T 2csu_A 98 GFG 100 (457)
T ss_dssp SST
T ss_pred CCC
Confidence 985
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.11 Score=53.32 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=31.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~--~V~l~~r~~ 82 (461)
..++|+|||+|..|.+.|..|++. | . +|+++.++.
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~-G-----~~~~V~v~E~~~ 41 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAE-K-----AFDQVTLFERRG 41 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTT-T-----CCSEEEEECSSS
T ss_pred CCCEEEEECccHHHHHHHHHHHhc-C-----CCCCeEEEecCC
Confidence 357999999999999999999998 8 7 999999875
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=92.56 E-value=0.12 Score=54.79 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.4
Q ss_pred CCceEEEECccHHHHHHHHHHHH---hcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~---~~G~~~~~~~V~l~~r~~ 82 (461)
..++|+|||+|..|.+.|..|++ . | .+|+++++.+
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~~~~-G-----~~V~liE~~~ 61 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKALQG-T-----ADITLLQAPD 61 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTT-S-----SEEEEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhcCC-C-----CcEEEEeCCC
Confidence 35689999999999999999999 7 7 8999999864
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.11 Score=51.10 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=41.3
Q ss_pred ccccchh--HHhhHHHHHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 19 HHTNGSL--EERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 19 ~~~~~~~--~~~~~~~~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
||..||. +++...+...+.+. +|+|.|.|+ |.+|.+++..|++. | ++|++.+|+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~---~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 62 (352)
T 1sb8_A 4 HHHHGSMGMMSRYEELRKELPAQ---PKVWLITGVAGFIGSNLLETLLKL-D-----QKVVGLDNFAT 62 (352)
T ss_dssp --------CCCHHHHHHHHHHHS---CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred cccccchHHHHHHHhhchhcCcc---CCeEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCCc
Confidence 5556664 66777777777654 379999998 99999999999998 8 89999999753
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.11 Score=51.45 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|+|||+|..|.+.|..|++. | .+|+++++..
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~~-G-----~~V~vie~~~ 36 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAKQ-G-----VKTLLVDAFD 36 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCC
Confidence 35899999999999999999999 8 8999998764
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.11 Score=50.70 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=31.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
...|.|||+|..|.+.|..|++. | ++|++++++.
T Consensus 4 ~~dvvIIG~G~~Gl~~A~~La~~-G-----~~V~vlE~~~ 37 (369)
T 3dme_A 4 DIDCIVIGAGVVGLAIARALAAG-G-----HEVLVAEAAE 37 (369)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCC
Confidence 35899999999999999999999 8 8999999874
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.16 Score=50.19 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=28.5
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
-.++.|||.|. +|..+|..|... | .+|+++.+.
T Consensus 165 Gk~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~~~~ 198 (300)
T 4a26_A 165 GKRAVVLGRSNIVGAPVAALLMKE-N-----ATVTIVHSG 198 (300)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 36899999876 799999999988 7 889998764
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.26 Score=48.59 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=28.6
Q ss_pred CCCceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 41 GDPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 41 ~~~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
....+++|||+|. +|..+|..|... | ..|+++.+
T Consensus 163 l~gk~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~hs 197 (301)
T 1a4i_A 163 IAGRHAVVVGRSKIVGAPMHDLLLWN-N-----ATVTTCHS 197 (301)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhC-C-----CeEEEEEC
Confidence 3457999999996 799999999988 7 78998853
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=92.31 E-value=0.13 Score=51.64 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=32.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.++|+|||+|..|.++|..|++. | .+|+++.+.+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 39 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDA-G-----VDVDVYERSPQ 39 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 46899999999999999999999 8 89999998764
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.13 Score=48.44 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=30.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|+|||+|.-|.+.|..|++. | ++|++++++.
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 35 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRA-R-----KNILLVDAGE 35 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence 5899999999999999999999 8 8999999753
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=92.28 E-value=0.09 Score=54.25 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=30.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|++|+|||+|.-|.+-|..|+++ | ++|+++.++.
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~-G-----~~V~VlEa~~ 34 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAA-G-----IPVLLLEQRD 34 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHT-T-----CCEEEECCC-
T ss_pred CCCEEEECCcHHHHHHHHHHHHC-C-----CcEEEEccCC
Confidence 46899999999999999999999 8 9999998764
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.16 Score=49.70 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=36.8
Q ss_pred hhHHHHHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 28 RLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 28 ~~~~~~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+++|.-..|.| .+|+|.|.|+ |.+|++++..|.+. | ++|++.+|+..
T Consensus 13 ~~~~~~~~~~~---~~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 60 (351)
T 3ruf_A 13 RYEEITQQLIF---SPKTWLITGVAGFIGSNLLEKLLKL-N-----QVVIGLDNFST 60 (351)
T ss_dssp HHHHHHHHHHH---SCCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred HHhhHHhhCCC---CCCeEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCCC
Confidence 34444444433 2479999996 99999999999998 8 99999999764
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=92.22 E-value=0.096 Score=55.51 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=31.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..+|.|||+|..|.++|..|++. | .+|+++++...
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~-G-----~~V~vlEr~~~ 60 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHR-Q-----VGHLVVEQTDG 60 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 46899999999999999999999 8 89999998764
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=92.12 E-value=0.36 Score=48.47 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=28.7
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+.++|+||+|+|...-++.+..+. .. +..+|+++.-+
T Consensus 60 ~~~~~Dvvf~a~~~~~s~~~a~~~~---~~---G~~vID~Sa~~ 97 (344)
T 3tz6_A 60 DPSGLDIALFSAGSAMSKVQAPRFA---AA---GVTVIDNSSAW 97 (344)
T ss_dssp CCTTCSEEEECSCHHHHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred HhccCCEEEECCChHHHHHHHHHHH---hC---CCEEEECCCcc
Confidence 3578999999999988888777654 33 57788877543
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.1 Score=51.31 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=30.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..|+|||+|..|.+.|..|++. | .+|+++++..
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~-G-----~~V~vle~~~ 35 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRA-G-----LNVLMTDAHM 35 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 5799999999999999999999 8 8999999864
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=92.03 E-value=0.33 Score=47.64 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=29.4
Q ss_pred CCCCceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 40 EGDPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 40 ~~~~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
+....+++|||+|. .|..+|..|... | ..|+++.+.
T Consensus 156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~hs~ 192 (288)
T 1b0a_A 156 DTFGLNAVVIGASNIVGRPMSMELLLA-G-----CTTTVTHRF 192 (288)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTT-T-----CEEEEECSS
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 33457999999996 699999999988 7 889988543
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.61 Score=39.51 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=26.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEE-ecC
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRP 81 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~-~r~ 81 (461)
+..++.|+|+|..|..++..+.++.| ++|..+ +.+
T Consensus 3 ~~~~vlIiGaG~~g~~l~~~l~~~~g-----~~vvg~~d~~ 38 (141)
T 3nkl_A 3 AKKKVLIYGAGSAGLQLANMLRQGKE-----FHPIAFIDDD 38 (141)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHSSS-----EEEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-----cEEEEEEECC
Confidence 45789999999999999999986524 666544 433
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.33 Score=55.52 Aligned_cols=56 Identities=18% Similarity=0.136 Sum_probs=42.5
Q ss_pred HHhhHHHHHhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCC-CCCeeEEEEecCc
Q 012547 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYL-RDKVLIRIWRRPG 82 (461)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~mkI~IIGaGamG~alA~~La~~~G~~-~~~~~V~l~~r~~ 82 (461)
.+|.+...+++|...-. ..||.|||+|..|+.++..|+.. |.- .++.+++++|.+.
T Consensus 405 ~~Ry~rq~~l~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~-Gv~~g~~G~i~lvD~D~ 464 (1015)
T 3cmm_A 405 NSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALL-GLGSGSDGYIVVTDNDS 464 (1015)
T ss_dssp SSTTHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHH-TTTCSTTCEEEEECCCB
T ss_pred hhhhhhHHHhcCHHHHHHHhcCeEEEEecCHHHHHHHHHHHHc-CcCcCCCCeEEEEeCCE
Confidence 46888888888754322 37999999999999999999999 820 1114899999775
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.91 E-value=0.13 Score=50.82 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..+|+|||+|..|.+.|..|++. | ++|++++++.
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~~-G-----~~V~lle~~~ 38 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAKR-G-----EEVTVIEKRF 38 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 35799999999999999999999 8 8999999863
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.61 Score=53.34 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=39.1
Q ss_pred HHhhHHHHHhhcCCCC---CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 26 EERLDELRRLMGKAEG---DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 26 ~~~~~~~~~~~~~~~~---~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++|.+.-.+++|...- ...+|+|||+|..|+.+|..|+.. |. ..++++|.+.
T Consensus 7 ~~rY~Rqi~l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~a-GV----g~itlvD~D~ 61 (1015)
T 3cmm_A 7 ESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLA-GV----KSMTVFDPEP 61 (1015)
T ss_dssp HHHHHHHHHHSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHH-CC----SEEEEECCSB
T ss_pred hHhccchHhhcCHHHHHHHhcCEEEEECCChHHHHHHHHHHHc-CC----CeEEEecCCE
Confidence 4556655555543321 236899999999999999999999 83 6899999875
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=91.86 E-value=0.14 Score=49.52 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=30.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
..+|+|||+|.-|.+.|..|++. | ++|++++++
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~ 40 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRA-Q-----LSTLILEKG 40 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHHc-C-----CcEEEEeCC
Confidence 45899999999999999999998 8 899999987
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=91.86 E-value=0.25 Score=48.44 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=27.1
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 43 ~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
-.+++|||.|. +|..+|..|... | ..|++..+
T Consensus 161 Gk~vvVvGrs~iVG~plA~lL~~~-g-----AtVtv~hs 193 (286)
T 4a5o_A 161 GMDAVVVGASNIVGRPMALELLLG-G-----CTVTVTHR 193 (286)
T ss_dssp TCEEEEECTTSTTHHHHHHHHHHT-T-----CEEEEECT
T ss_pred CCEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeC
Confidence 36899999876 899999999988 7 88988754
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=91.83 E-value=0.11 Score=49.93 Aligned_cols=35 Identities=9% Similarity=0.061 Sum_probs=31.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++++|+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~vie~~~ 55 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARA-E-----IKPILYEGMM 55 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT-T-----CCCEEECCSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEecCC
Confidence 457899999999999999999999 8 8999999853
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.82 E-value=0.12 Score=51.60 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=31.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.++|+|||+|..|.++|..|++. | .+|+++++++.
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~-G-----~~V~viE~~~~ 40 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQ-G-----HRVVVVEQARR 40 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCCC
Confidence 46899999999999999999999 8 89999998754
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=91.74 E-value=0.15 Score=52.48 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=31.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..++|+|||+|..|.+.|..|++. | ++|+++.++.
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~-g-----~~v~v~E~~~ 44 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKA-G-----YKVTVLEART 44 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeccC
Confidence 357999999999999999999999 8 8999998764
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=91.72 E-value=0.14 Score=51.02 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=31.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|.|||+|..|.++|..|++. | .+|+++.+...
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 4799999999999999999999 8 89999998764
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=91.72 E-value=0.16 Score=50.53 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=31.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.++|+|||+|..|.++|..|++. | .+|++++++..
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~~ 45 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQN-G-----WDVRLHEKSSE 45 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-C-----CCEEEEecCCC
Confidence 46899999999999999999999 8 89999998754
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.13 Score=52.50 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=30.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~--~V~l~~r~~ 82 (461)
+++|+|||+|..|.+.|..|++. | + +|+++..+.
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~-G-----~~~~V~vlEa~~ 37 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRA-P-----CPPKVVLVESSE 37 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTS-S-----SCCEEEEECSSS
T ss_pred CceEEEECCcHHHHHHHHHHHhC-C-----CCCcEEEEeCCC
Confidence 36899999999999999999999 8 7 999998754
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.16 Score=51.18 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHH---hcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~---~~G~~~~~~~V~l~~r~~~ 83 (461)
|++|+|||+|..|.+.|..|++ . | ++|++++++..
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~-g-----~~V~vie~~~~ 38 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGS-K-----ADVKVINKSRF 38 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGG-G-----SEEEEEESSSE
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCC-C-----CeEEEEeCCCC
Confidence 3689999999999999999999 6 6 89999998763
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=91.62 E-value=0.26 Score=49.33 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.9
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~ 65 (461)
++||+|+|+|.+|..+++.|..+
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~ 25 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNS 25 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH
T ss_pred ceEEEEEccCHHHHHHHHHHHcC
Confidence 36999999999999999999876
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=91.61 E-value=0.41 Score=48.23 Aligned_cols=40 Identities=18% Similarity=0.354 Sum_probs=29.9
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
|.++...++|++|+|+|...-+++..++ . +..||+++.-+
T Consensus 71 ~~~~~~~~~Dvvf~alp~~~s~~~~~~~-----~---g~~VIDlSsdf 110 (351)
T 1vkn_A 71 DPEKVSKNCDVLFTALPAGASYDLVREL-----K---GVKIIDLGADF 110 (351)
T ss_dssp CHHHHHHHCSEEEECCSTTHHHHHHTTC-----C---SCEEEESSSTT
T ss_pred CHHHhhcCCCEEEECCCcHHHHHHHHHh-----C---CCEEEECChhh
Confidence 4444347899999999999888877665 3 67888887544
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=0.15 Score=50.88 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..|+|||+|..|.+.|..|++. | .+|+++++..
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~-G-----~~V~vlE~~~ 37 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAER-G-----HRVLVLERHT 37 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 5799999999999999999999 8 8999999865
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=91.51 E-value=0.28 Score=46.86 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=32.2
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
+|+|.|.|+ |.+|.+++..|.+. | .++|++.+|+++.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~-g----~~~V~~~~R~~~~ 42 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLED-G----TFKVRVVTRNPRK 42 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHH-C----SSEEEEEESCTTS
T ss_pred CCEEEEECCCchHHHHHHHHHHhc-C----CceEEEEEcCCCC
Confidence 478999998 99999999999987 5 2799999998754
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=91.50 E-value=0.42 Score=47.78 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=20.5
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHh
Q 012547 43 PLRIVGVG-AGAWGSVFTAMLQDS 65 (461)
Q Consensus 43 ~mkI~IIG-aGamG~alA~~La~~ 65 (461)
+|||+|+| .|.+|..+...|.+.
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~ 29 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDER 29 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC
Confidence 47999999 699999999999865
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=91.46 E-value=0.57 Score=46.49 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=32.6
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
.|+|.|.|+ |.+|.+++..|++. | ++|++.+|+.+..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~ 42 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAV-G-----HHVRAQVHSLKGL 42 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHT-T-----CCEEEEESCSCSH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-C-----CEEEEEECCCChh
Confidence 478999996 99999999999998 8 8999999987643
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=91.35 E-value=0.29 Score=51.36 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=33.0
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
+|||.|.|+ |.+|++++..|.+. | ++|++++|+...
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~-G-----~~V~~l~R~~~~ 183 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTG-G-----HEVIQLVRKEPK 183 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESSSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCCCC
Confidence 789999995 99999999999999 8 999999998753
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=91.33 E-value=0.14 Score=51.33 Aligned_cols=33 Identities=24% Similarity=0.516 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++|+|||+|..|.+.|..|++. | .+|+++.++.
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~-G-----~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKS-G-----FKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence 6899999999999999999999 8 8999999874
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=91.31 E-value=0.18 Score=50.22 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=34.5
Q ss_pred hHHhhHHHHHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 25 LEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+--|-+-+.+.|.+..-.+|+|.|.|+ |.+|.+++..|.+. | .++|++++|+..
T Consensus 14 ~~~~~~~m~~~~~~~~~~~~~ilVtGatG~iG~~l~~~L~~~-g----~~~V~~~~r~~~ 68 (377)
T 2q1s_A 14 LVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLEL-G----VNQVHVVDNLLS 68 (377)
T ss_dssp ------------CCGGGTTCEEEEETTTSHHHHHHHHHHHHT-T----CSEEEEECCCTT
T ss_pred cccccccCCCCCChHHhCCCEEEEECCccHHHHHHHHHHHHc-C----CceEEEEECCCC
Confidence 444555566666544445689999997 99999999999988 5 278999998764
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.26 Score=51.72 Aligned_cols=35 Identities=26% Similarity=0.160 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..++|+|||+|..|.+.|..|++. | ++|++++++.
T Consensus 42 ~~~dVvIIGgG~aGl~aA~~l~~~-G-----~~V~liE~~~ 76 (523)
T 1mo9_A 42 REYDAIFIGGGAAGRFGSAYLRAM-G-----GRQLIVDRWP 76 (523)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCC
Confidence 347899999999999999999999 8 8999999886
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=91.28 E-value=1.1 Score=45.35 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.4
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCC--CEEEEEee
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAK 198 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~--~iIIs~tk 198 (461)
+.++ +.++|+||+|+|...-++++..+.. . + ..||+++.
T Consensus 58 ~~~~-~~~~Dvvf~a~~~~~s~~~~~~~~~---~---G~k~~VID~ss 98 (370)
T 3pzr_A 58 DIES-LKQLDAVITCQGGSYTEKVYPALRQ---A---GWKGYWIDAAS 98 (370)
T ss_dssp CHHH-HTTCSEEEECSCHHHHHHHHHHHHH---T---TCCCEEEECSS
T ss_pred ChhH-hccCCEEEECCChHHHHHHHHHHHH---C---CCCEEEEeCCc
Confidence 4443 6789999999999888887776543 2 3 47887764
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=91.28 E-value=0.19 Score=50.68 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=31.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|+|+|||+|..|.+.|..|++. | ++|+++.++..
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~-g-----~~v~v~E~~~~ 37 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEK-G-----HQVHIIDQRDH 37 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEESSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEEecCC
Confidence 7999999999999999999998 8 99999998753
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=91.11 E-value=0.36 Score=49.82 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=31.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+++|+|||+|..|.+.|..|++. | ++|+++.++.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~-g-----~~v~vlE~~~ 66 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGA-G-----HQVTVLEASE 66 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHH-T-----CEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCC
Confidence 357899999999999999999999 8 8999998764
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.2 Score=50.51 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=31.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~ 83 (461)
++|+|||+|..|.++|..|++. | .+ |+++.+...
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~-G-----~~~v~v~E~~~~ 39 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQA-G-----IGKVTLLESSSE 39 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEEESSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEECCCC
Confidence 6899999999999999999999 8 88 999998754
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=91.07 E-value=0.19 Score=47.84 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=30.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEE-EecC
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRP 81 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l-~~r~ 81 (461)
.+++|+|||+|.-|.+.|..|++. | ++|++ ++++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~li~e~~ 37 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRG-G-----LKNVVMFEKG 37 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHH-T-----CSCEEEECSS
T ss_pred CCceEEEECCCHHHHHHHHHHHHC-C-----CCeEEEEeCC
Confidence 457999999999999999999999 8 89999 8873
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=91.06 E-value=0.17 Score=51.94 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=31.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
....|.|||+|..|.+.|..|++. | .+|+++++.+.
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~-G-----~~V~llEk~~~ 60 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEE-G-----ANVLLLDKGNK 60 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CCCCEEEECCcHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 345799999999999999999999 8 89999998764
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.34 Score=50.70 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=32.8
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
....+|+|||+|..|.++|..|++. | .+|+++.+.+.
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~~-G-----~~V~liEk~~~ 126 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELALL-G-----ARVVLVEKRIK 126 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCSS
T ss_pred cCCCCEEEECccHHHHHHHHHHHHC-C-----CeEEEEEeccc
Confidence 3457999999999999999999999 8 89999998753
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.35 Score=51.16 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=32.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+++.|+|+|.+|.+++..|++. | .+|++++|+.++++.
T Consensus 365 k~vlV~GaGGig~aia~~L~~~-G-----~~V~i~~R~~~~a~~ 402 (523)
T 2o7s_A 365 KTVVVIGAGGAGKALAYGAKEK-G-----AKVVIANRTYERALE 402 (523)
T ss_dssp -CEEEECCSHHHHHHHHHHHHH-C-----C-CEEEESSHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 5799999999999999999999 8 789999999876553
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=91.01 E-value=0.97 Score=45.94 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=28.8
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCC--CEEEEEeec
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKG 199 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~--~iIIs~tkG 199 (461)
+.++ +.++|+||+|+|...-++++..+.. . + ..||+++.-
T Consensus 62 ~~~~-~~~vDvvf~a~~~~~s~~~~~~~~~---~---G~k~~VID~ss~ 103 (377)
T 3uw3_A 62 SIDD-LKKCDVIITCQGGDYTNDVFPKLRA---A---GWNGYWIDAASS 103 (377)
T ss_dssp CHHH-HHTCSEEEECSCHHHHHHHHHHHHH---T---TCCSEEEECSST
T ss_pred ChhH-hcCCCEEEECCChHHHHHHHHHHHH---C---CCCEEEEeCCcc
Confidence 4443 5789999999999888887776543 2 3 378887643
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.19 Score=52.83 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=31.2
Q ss_pred CCceEEEECccHHHHHHHHHHHH------------hcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQD------------SYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~------------~~G~~~~~~~V~l~~r~~ 82 (461)
..++|+|||+|.-|.+.|..|++ . | .+|+|+.++.
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~-G-----~~V~liE~~~ 52 (526)
T 2pyx_A 6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSP-K-----LNITLIESPD 52 (526)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSC-S-----CEEEEEECSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCC-C-----CeEEEEeCCC
Confidence 34689999999999999999999 7 7 8999999764
|
| >2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 | Back alignment and structure |
|---|
Probab=90.82 E-value=0.94 Score=50.25 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||.|||+|..|+.++..|+.. |. .+++++|.+.
T Consensus 412 ~~vlvvG~GglG~~~~~~L~~~-Gv----g~i~l~D~d~ 445 (805)
T 2nvu_B 412 CKVLVIGAGGLGCELLKNLALS-GF----RQIHVIDMDT 445 (805)
T ss_dssp CCEEEECCSSHHHHHHHHHHTT-TC----CEEEEEECCB
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CC----CcEEEECCCe
Confidence 5899999999999999999999 82 5899999875
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=0.21 Score=48.99 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=30.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCC-CCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGY-LRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~-~~~~~~V~l~~r~~ 82 (461)
|.|+|||+|..|.+.|..|++. |. ..++.+|+++++..
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~-G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHER-YHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-HTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHh-ccccCCCceEEEEECCC
Confidence 6899999999999999999998 40 00116899999874
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.34 Score=47.01 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=33.9
Q ss_pred ccccchhHHhhHHHHHhhc-----------CCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 19 HHTNGSLEERLDELRRLMG-----------KAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
||.-|.||..+..-=+++- |.+-..++|.|.|+ |.+|.++|..|++. | ++|.+.+|+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~l~~k~vlVTGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~~~ 79 (293)
T 3rih_A 6 HHHMGTLEAQTQGPGSMLVVESAEPAERKVMFDLSARSVLVTGGTKGIGRGIATVFARA-G-----ANVAVAARSPRELS 79 (293)
T ss_dssp ----------------------------CCTTCCTTCEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESSGGGGH
T ss_pred ccccchhhhhhcCCceeeeecCCCCcccccccCCCCCEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 5666777765544211111 12222356778886 78999999999999 8 89999999987655
Q ss_pred h
Q 012547 87 R 87 (461)
Q Consensus 87 ~ 87 (461)
.
T Consensus 80 ~ 80 (293)
T 3rih_A 80 S 80 (293)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=90.66 E-value=0.2 Score=52.17 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=29.6
Q ss_pred CceEEEECccHHHHHHHHHHHH---hcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~---~~G~~~~~~~V~l~~r~~ 82 (461)
+++|+|||+|..|.+.|..|++ . | .+|+++.+..
T Consensus 2 ~~dVvIVGgG~aGl~~A~~La~~~~~-G-----~~V~lvE~~~ 38 (511)
T 2weu_A 2 IRSVVIVGGGTAGWMTASYLKAAFDD-R-----IDVTLVESGN 38 (511)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHGG-G-----SEEEEEEC--
T ss_pred cceEEEECCCHHHHHHHHHHHhhcCC-C-----CEEEEEecCC
Confidence 3589999999999999999999 8 7 8999998864
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.63 E-value=0.22 Score=48.17 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=31.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+++|+|||+|.-|.+.|..|++. | ++|++++++.
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 38 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGMR-G-----LSFRFVDPLP 38 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred cCcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence 46899999999999999999998 8 8999999875
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=0.34 Score=50.27 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=29.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEe----cC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWR----RP 81 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~----r~ 81 (461)
.||.|+|+|..|.+++..|... |.- ..+|++++ |+
T Consensus 187 ~rvlvlGAGgAg~aia~~L~~~-G~~--~~~I~vvd~~~~R~ 225 (439)
T 2dvm_A 187 ITLALFGAGAAGFATLRILTEA-GVK--PENVRVVELVNGKP 225 (439)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-TCC--GGGEEEEEEETTEE
T ss_pred CEEEEECccHHHHHHHHHHHHc-CCC--cCeEEEEEccCCCc
Confidence 6899999999999999999998 810 02799999 87
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=90.36 E-value=0.25 Score=47.26 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=32.3
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++|+|.|.|+ |.+|++++..|.+. | ++|++.+|+..
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 42 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVAS-G-----EEVTVLDDLRV 42 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHT-T-----CCEEEECCCSS
T ss_pred CCCeEEEECCCChHHHHHHHHHHHC-C-----CEEEEEecCCc
Confidence 3579999998 99999999999999 8 89999999864
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=90.33 E-value=0.23 Score=50.08 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=30.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++|+|||+|..|.+.|..|++. | ++|+++.++.
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~-G-----~~V~vlE~~~ 34 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNA-G-----KKVLLLEGGE 34 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHHc-C-----CeEEEEecCC
Confidence 5899999999999999999999 8 8999998753
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=90.30 E-value=0.24 Score=51.80 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=32.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..++|.|||+|..|.++|..|++. | .+|+++++.+.
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~-G-----~~v~vlE~~~~ 46 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLG-G-----VDVMVLEQLPQ 46 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 346899999999999999999999 8 89999998754
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=90.30 E-value=0.18 Score=54.23 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|+|||+|..|.+.|..|++. | .+|+++.+..
T Consensus 24 ~DVvIVGgG~AGl~aA~~Lar~-G-----~~V~LiEr~~ 56 (591)
T 3i3l_A 24 SKVAIIGGGPAGSVAGLTLHKL-G-----HDVTIYERSA 56 (591)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHcC-C-----CCEEEEcCCC
Confidence 6899999999999999999999 8 8999999873
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=90.29 E-value=0.23 Score=48.66 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~ 82 (461)
.++|+|||+|..|.+.|..|++. | + +|++++++.
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~-g-----~~~v~lie~~~ 38 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDF-G-----ITDVIILEKGT 38 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCCEEEECSSS
T ss_pred cCcEEEECcCHHHHHHHHHHHHc-C-----CCcEEEEecCC
Confidence 36899999999999999999998 8 7 899999875
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=90.28 E-value=1.4 Score=44.58 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=28.6
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCC--EEEEEeec
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVP--VIISLAKG 199 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~--iIIs~tkG 199 (461)
|+++ +.++|+||.|+|.....+.+..+.. . +. +||+++.-
T Consensus 59 ~~~~-~~~~DvVf~a~g~~~s~~~a~~~~~---~---G~k~vVID~ss~ 100 (367)
T 1t4b_A 59 DLEA-LKALDIIVTCQGGDYTNEIYPKLRE---S---GWQGYWIDAASS 100 (367)
T ss_dssp CHHH-HHTCSEEEECSCHHHHHHHHHHHHH---T---TCCCEEEECSST
T ss_pred ChHH-hcCCCEEEECCCchhHHHHHHHHHH---C---CCCEEEEcCChh
Confidence 4544 5789999999998888777766543 2 33 78877643
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=90.26 E-value=0.29 Score=47.74 Aligned_cols=37 Identities=27% Similarity=0.196 Sum_probs=31.7
Q ss_pred CCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 41 ~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
-.+|+|.|.|+ |.+|.+++..|.+. | ++|++.+|+..
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 62 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMD-G-----HEVTVVDNFFT 62 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHC-C-----CEEEEEeCCCc
Confidence 34589999998 99999999999998 8 89999998753
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=90.18 E-value=0.14 Score=49.21 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=31.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+.+|.|||+|.-|.+.|..|++. | ++|+++++++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 40 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMR-Q-----ASVKIIESLP 40 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred cceEEEECCCHHHHHHHHHHHHC-C-----CCEEEEEcCC
Confidence 35899999999999999999998 8 8999999875
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=90.14 E-value=0.32 Score=46.28 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=32.5
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+++.|.|+ |.+|.++|..|++. | ++|.+.+|+.+.++.
T Consensus 31 k~vlVTGas~GIG~aia~~l~~~-G-----~~Vi~~~r~~~~~~~ 69 (281)
T 3ppi_A 31 ASAIVSGGAGGLGEATVRRLHAD-G-----LGVVIADLAAEKGKA 69 (281)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCChHHHHH
Confidence 56888887 89999999999999 8 899999999876543
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.09 E-value=0.31 Score=46.34 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=32.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|.|.|+ |.+|.+++..|++. | ++|.+.+|+.+..+
T Consensus 33 k~vlVTGasggIG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 70 (279)
T 1xg5_A 33 RLALVTGASGGIGAAVARALVQQ-G-----LKVVGCARTVGNIE 70 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEECChHHHH
Confidence 57889986 89999999999999 8 89999999876554
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=90.07 E-value=0.6 Score=48.19 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+||.|||.|..|.+.|..|.+. | ++|+++|++..
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~-G-----~~V~~~D~~~~ 43 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKL-G-----AIVTVNDGKPF 43 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHT-T-----CEEEEEESSCG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEeCCcc
Confidence 47999999999999999999999 8 99999998763
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=90.05 E-value=0.27 Score=52.14 Aligned_cols=53 Identities=23% Similarity=0.282 Sum_probs=40.5
Q ss_pred hhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++.+-.+..++++.........|.|||+|..|.+.|..+++. | .+|.++.+..
T Consensus 107 ~l~~a~~~~~~~~~~~~~~~~DVvVVGaG~aGl~aA~~la~~-G-----~~V~vlEk~~ 159 (571)
T 1y0p_A 107 ELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDS-G-----AKVILIEKEP 159 (571)
T ss_dssp GGGGGHHHHHHHHHSCCSEECSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred HHHHHHHHhhhhhccCCCCCCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 344445555566643333456899999999999999999999 8 8999998765
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=90.01 E-value=0.29 Score=51.41 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHH---hcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~---~~G~~~~~~~V~l~~r~~ 82 (461)
+.+|+|||+|..|.+.|..|++ . | .+|+++.+..
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~-G-----~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQ-Q-----ANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCS-S-----CEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCC-C-----CEEEEECCCC
Confidence 4689999999999999999999 8 7 8999999854
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=89.89 E-value=0.2 Score=52.59 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=32.4
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..++.||+|||+|.-|...|..|++. + ++|+|++++..
T Consensus 39 ~~~KprVVIIGgG~AGl~~A~~L~~~-~-----~~VtLId~~~~ 76 (502)
T 4g6h_A 39 HSDKPNVLILGSGWGAISFLKHIDTK-K-----YNVSIISPRSY 76 (502)
T ss_dssp SCSSCEEEEECSSHHHHHHHHHSCTT-T-----CEEEEEESSSE
T ss_pred CCCCCCEEEECCcHHHHHHHHHhhhC-C-----CcEEEECCCCC
Confidence 33457999999999999999999877 6 89999998753
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=89.78 E-value=0.42 Score=46.20 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=33.6
Q ss_pred ccccchhHHhhHHHHHhhcCCCCCCceEEEECcc---HHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 19 HHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAG---AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaG---amG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
||.-+.+|+...-=..+..|..-..+++.|.|++ .+|.++|..|++. | .+|.+.+|+++.
T Consensus 6 ~~~~~~~~~~~~gp~sm~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~-G-----~~V~~~~r~~~~ 68 (296)
T 3k31_A 6 HHHMGTLEAQTQGPGSMRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQ-G-----AEVALTYLSETF 68 (296)
T ss_dssp ---------------CCCCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHT-T-----CEEEEEESSGGG
T ss_pred ccccccceecccCCccccchhccCCCEEEEEeCCCCCCHHHHHHHHHHHC-C-----CEEEEEeCChHH
Confidence 3444555554433222222222233578899985 8999999999999 8 899999999754
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.78 E-value=0.51 Score=44.75 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=32.8
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++|.|.|+ |.+|.++|..|++. | ++|.+.+|+++..+
T Consensus 31 ~k~vlITGasggIG~~la~~L~~~-G-----~~V~~~~r~~~~~~ 69 (272)
T 1yb1_A 31 GEIVLITGAGHGIGRLTAYEFAKL-K-----SKLVLWDINKHGLE 69 (272)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEEcCHHHHH
Confidence 367999986 89999999999999 8 89999999876544
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=89.74 E-value=0.24 Score=52.93 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..|.|||+|..|.++|..|++. | .+|.++++...
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~-G-----~~V~VlEr~~~ 83 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAG-G-----VGALVLEKLVE 83 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHT-T-----CCEEEEBSCSS
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEcCCCC
Confidence 4699999999999999999999 8 89999998754
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=89.66 E-value=0.16 Score=49.09 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=29.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
.++|+|||+|..|.+.|..|++. | ++|+++++
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~-g-----~~v~lie~ 39 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARA-E-----LKPLLFEG 39 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCCEEECC
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEec
Confidence 36899999999999999999998 8 89999987
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=89.64 E-value=0.27 Score=47.47 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=31.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|+|||+|..|.+.|..|++. | ++|+++++++.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~-g-----~~v~vie~~~~ 37 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRS-G-----LSYVILDAEAS 37 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-S-----CCEEEECCSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 5799999999999999999999 8 89999998753
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=89.45 E-value=0.57 Score=48.52 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..++|+|||+|.-|.+.|..|++. | ++|+++++...
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~-G-----~~V~v~e~~~~ 156 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAK-G-----YEVHVYDRYDR 156 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence 347899999999999999999999 8 89999998753
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=89.45 E-value=0.34 Score=51.32 Aligned_cols=42 Identities=10% Similarity=0.011 Sum_probs=36.4
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+...++|.|+|+|.+|..++..|.+. | ++|.+++.+++.++.
T Consensus 124 ~~~~~hviI~G~g~~g~~la~~L~~~-~-----~~vvvid~~~~~~~~ 165 (565)
T 4gx0_A 124 DDTRGHILIFGIDPITRTLIRKLESR-N-----HLFVVVTDNYDQALH 165 (565)
T ss_dssp TTCCSCEEEESCCHHHHHHHHHTTTT-T-----CCEEEEESCHHHHHH
T ss_pred cccCCeEEEECCChHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 44457899999999999999999988 7 899999999876654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=89.40 E-value=0.55 Score=44.29 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=35.0
Q ss_pred CCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 39 AEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 39 ~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+-..+++.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++.
T Consensus 4 ~~l~gk~~lVTGas~gIG~a~a~~l~~~-G-----~~V~~~~r~~~~~~~ 47 (255)
T 4eso_A 4 GNYQGKKAIVIGGTHGMGLATVRRLVEG-G-----AEVLLTGRNESNIAR 47 (255)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 3333467889986 88999999999999 8 899999999876553
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=89.39 E-value=0.36 Score=46.19 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=32.0
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
|||.|.|+ |.+|++++..|++. | ++|++.+|+.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 36 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVEL-G-----YEVVVVDNLSSG 36 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEECCCSSC
T ss_pred CEEEEECCCChHHHHHHHHHHhC-C-----CEEEEEeCCCCC
Confidence 78999998 99999999999999 8 999999998654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=89.39 E-value=0.52 Score=43.21 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=31.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
+|+|.|.|+ |.+|.+++..|++. | ++++|++.+|+++..
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~~~-~---~g~~V~~~~r~~~~~ 43 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEG-S---DKFVAKGLVRSAQGK 43 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-T---TTCEEEEEESCHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhc-C---CCcEEEEEEcCCCch
Confidence 578999995 99999999999987 3 018999999987543
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=89.36 E-value=0.32 Score=49.19 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=30.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCee--EEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL--IRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~--V~l~~r~~ 82 (461)
.+++|+|||+|.-|.+.|..|++. | ++ |+++++.+
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~-g-----~~~~V~lie~~~ 44 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQN-G-----FEGRVLVIGREP 44 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT-T-----CCSCEEEEESSS
T ss_pred CCCcEEEECChHHHHHHHHHHHcc-C-----cCCCEEEEecCC
Confidence 346899999999999999999998 7 55 99998865
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=89.33 E-value=0.39 Score=43.05 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=30.9
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++|||.|.|+ |.+|.+++..|+ . | ++|.+.+|+++
T Consensus 2 ~kM~vlVtGasg~iG~~~~~~l~-~-g-----~~V~~~~r~~~ 37 (202)
T 3d7l_A 2 NAMKILLIGASGTLGSAVKERLE-K-K-----AEVITAGRHSG 37 (202)
T ss_dssp CSCEEEEETTTSHHHHHHHHHHT-T-T-----SEEEEEESSSS
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-C-C-----CeEEEEecCcc
Confidence 4579999996 899999999999 8 8 99999999863
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.31 E-value=0.39 Score=46.48 Aligned_cols=61 Identities=15% Similarity=0.234 Sum_probs=33.5
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
|.---||..|.+....+ +|.+ ..+++.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~----m~~l---~~k~vlVTGas~gIG~aia~~L~~~-G-----~~V~~~~r~~~~~~~ 65 (297)
T 1xhl_A 4 SHHHHHHSSGLVPRGSH----MARF---SGKSVIITGSSNGIGRSAAVIFAKE-G-----AQVTITGRNEDRLEE 65 (297)
T ss_dssp -----------------------CC---TTCEEEETTCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred ccccccccCCccccccc----ccCC---CCCEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 33344666666654433 3322 2356888886 89999999999999 8 899999999865543
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=89.21 E-value=0.26 Score=50.41 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=30.7
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 38 ~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|+-...++|+|||+|.-|.+.|..|++. | ++|+++.++.
T Consensus 11 ~~~~~~~~v~iiG~G~~Gl~aa~~l~~~-g-----~~v~v~E~~~ 49 (478)
T 2ivd_A 11 MPRTTGMNVAVVGGGISGLAVAHHLRSR-G-----TDAVLLESSA 49 (478)
T ss_dssp ------CCEEEECCBHHHHHHHHHHHTT-T-----CCEEEECSSS
T ss_pred CCCCCCCcEEEECCCHHHHHHHHHHHHC-C-----CCEEEEEcCC
Confidence 3444557899999999999999999999 8 8999998775
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=89.21 E-value=0.19 Score=52.80 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
...|.|||+|..|.+.|..|+++ | ++|.++.++.
T Consensus 20 ~~dv~iiG~G~~g~~~a~~l~~~-g-----~~v~~~e~~~ 53 (475)
T 3p1w_A 20 HYDVIILGTGLKECILSGLLSHY-G-----KKILVLDRNP 53 (475)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeccC
Confidence 35799999999999999999999 8 8999999875
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=89.19 E-value=5.6 Score=39.02 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=74.2
Q ss_pred CCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCC
Q 012547 146 CPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP 224 (461)
Q Consensus 146 ~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~ 224 (461)
.++++++|-.||++++|++|+.+|-- ...++++++.+++++ +++|. -+=.+++. .+...+++ +++.
T Consensus 127 aGVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpE---gAII~-nTCTipp~--------~ly~~le~-l~R~ 193 (358)
T 2b0j_A 127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPE---GAIVT-HACTIPTT--------KFAKIFKD-LGRE 193 (358)
T ss_dssp GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCT---TCEEE-ECSSSCHH--------HHHHHHHH-TTCT
T ss_pred cCcEeecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcC---CCEEe-cccCCCHH--------HHHHHHHH-hCcc
Confidence 37899999999999999999999964 588999999999998 66443 33244432 12333443 5532
Q ss_pred CCcEEEEeC-cchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEe-cCChHHH
Q 012547 225 IENILYLGG-PNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD-NGDLVTH 280 (461)
Q Consensus 225 ~~~v~vlsG-Pn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~-s~Di~gv 280 (461)
.+.+.|. |.-.-+ ..|+.....--.+++..+++.++-.+.+-..|. ..|+.+.
T Consensus 194 --DvgIsS~HPaaVPg-t~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vPAdl~Sp 248 (358)
T 2b0j_A 194 --DLNITSYHPGCVPE-MKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMPANLIGP 248 (358)
T ss_dssp --TSEEEECBCSSCTT-TCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHH
T ss_pred --cCCeeccCCCCCCC-CCCccccccccCCHHHHHHHHHHHHHhCCCeEecchhhccc
Confidence 2444443 332221 245432222123577788888888776666554 4566653
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=89.17 E-value=0.32 Score=47.39 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=30.9
Q ss_pred CCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 41 ~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+.|+|.|.|+ |.+|++++..|.+. | ++|++++|+.+
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~-G-----~~V~~~~r~~~ 54 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQ-G-----RTVRGFDLRPS 54 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHT-T-----CCEEEEESSCC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhC-C-----CEEEEEeCCCC
Confidence 34578999998 99999999999999 8 99999999864
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=89.16 E-value=0.19 Score=52.26 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=34.1
Q ss_pred ccccchhHHhhH-HHHHhh--cCCCCC-CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 19 HHTNGSLEERLD-ELRRLM--GKAEGD-PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 19 ~~~~~~~~~~~~-~~~~~~--~~~~~~-~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
||..|+-+-+.- .+||.+ .|.... .++|.|||+|.-|.+.|..|++. |. ++.+|++++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~m~~~~m~~dvvIIGaG~aGl~aA~~l~~~-g~--~~~~V~lie~~~~ 72 (490)
T 2bc0_A 7 HHHHGMASMTGGQQMGRTLYDDDDKDRWGSKIVVVGANHAGTACIKTMLTN-YG--DANEIVVFDQNSN 72 (490)
T ss_dssp -----------CCCCSCCTTCCCCTTCCCCEEEEECCSHHHHHHHHHHHHH-HG--GGSEEEEECSSSC
T ss_pred ccccccccccchhhhccccccccchhccCCcEEEECCCHHHHHHHHHHHhc-CC--CCCeEEEEECCCC
Confidence 566677665542 233332 122222 26899999999999999999986 30 0168999998763
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=89.12 E-value=0.24 Score=46.78 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=30.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhc-CCCCCCeeEEEEecCchhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSY-GYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~-G~~~~~~~V~l~~r~~~~~ 85 (461)
|+|.|.|+ |.+|++++..|.+.. | ++|++.+|+.+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g-----~~V~~~~r~~~~~ 39 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA-----SQIIAIVRNVEKA 39 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG-----GGEEEEESCTTTT
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC-----CeEEEEEcCHHHH
Confidence 57999997 999999999998641 3 8999999987544
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=88.94 E-value=0.25 Score=48.42 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=29.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|+|||+|..|.+.|..|+ . | .+|++++++.
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~-G-----~~V~vlE~~~ 41 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-A-H-----GRVVVLEREA 41 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-T-T-----SCEEEECSSS
T ss_pred cCCEEEECCcHHHHHHHHHHh-C-C-----CCEEEEECCC
Confidence 367999999999999999999 7 7 8999999874
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=88.91 E-value=0.34 Score=46.23 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=29.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRP 81 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~ 81 (461)
++|+|||+|.-|.+.|..|++. | + +|.+++++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~-g-----~~~v~lie~~ 34 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRG-G-----VKNAVLFEKG 34 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CSSEEEECSS
T ss_pred ceEEEECccHHHHHHHHHHHHC-C-----CCcEEEEcCC
Confidence 5899999999999999999998 8 8 99999875
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=88.84 E-value=0.34 Score=50.08 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHH---hcCCCCCCee---EEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVL---IRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~---~~G~~~~~~~---V~l~~r~~~ 83 (461)
++|+|||+|.-|.+.|..|++ . | .+ |++++++..
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~-G-----~~~~~V~v~E~~~~ 42 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEK-G-----AEIPELVCFEKQAD 42 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHT-T-----CCCCEEEEECSSSS
T ss_pred CcEEEECccHHHHHHHHHHHhhhhc-C-----CCCCcEEEEEcCCC
Confidence 689999999999999999999 8 7 77 999998753
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=88.69 E-value=0.82 Score=46.35 Aligned_cols=34 Identities=35% Similarity=0.422 Sum_probs=31.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
..++|+|||+|.-|.+.|..|++. | ++|+++.++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~-G-----~~V~VlE~~ 76 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRA-G-----HDVTILEAN 76 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHT-S-----CEEEEECSC
T ss_pred CCceEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecc
Confidence 457999999999999999999999 8 899999877
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=88.61 E-value=0.42 Score=47.65 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhc-CCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSY-GYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~-G~~~~~~~V~l~~r~~~ 83 (461)
|+|.|||+|..|.++|..|++.. | .+|+++.+++.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G-----~~V~v~E~~~~ 36 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPL-----WAIDIVEKNDE 36 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTT-----SEEEEECSSCT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCC-----CCEEEEECCCC
Confidence 58999999999999999999862 4 89999998764
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=88.49 E-value=0.63 Score=45.44 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=26.9
Q ss_pred CCCCceEEEECccHH-HHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 40 EGDPLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 40 ~~~~mkI~IIGaGam-G~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
+....+++|||+|.+ |..+|..|... |. +..|++..+
T Consensus 155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~-g~---~atVtv~h~ 192 (281)
T 2c2x_A 155 SIAGAHVVVIGRGVTVGRPLGLLLTRR-SE---NATVTLCHT 192 (281)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHTST-TT---CCEEEEECT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHhcC-CC---CCEEEEEEC
Confidence 334579999999975 99999998765 20 167887743
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=88.49 E-value=0.27 Score=51.38 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|+|||+|..|.+.|..|++. | ++|+++.+..
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~-G-----~~V~liE~~~ 40 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMR-G-----HRVLLLEREA 40 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhC-C-----CCEEEEccCC
Confidence 5899999999999999999998 8 8999999875
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=88.39 E-value=0.61 Score=43.44 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=32.7
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++|.|.|+ |.+|.+++..|++. | ++|.+.+|+.+..+
T Consensus 13 ~k~vlItGasggiG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 51 (260)
T 3awd_A 13 NRVAIVTGGAQNIGLACVTALAEA-G-----ARVIIADLDEAMAT 51 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 357899986 99999999999999 8 89999999876544
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.37 E-value=0.55 Score=44.20 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=34.0
Q ss_pred CCceEEEECc-c-HHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGA-G-AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGa-G-amG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
..+++.|.|+ | .+|.++|..|++. | ++|.+.+|+.+..+.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~-G-----~~V~~~~r~~~~~~~ 62 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLE-G-----ADVVISDYHERRLGE 62 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHC-C-----CEEEEecCCHHHHHH
Confidence 3467999998 8 5999999999999 8 899999999876543
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=88.28 E-value=0.46 Score=44.09 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|.|||+|..|...|..|++. | .+|+++.+..
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~-g-----~~v~lie~~~ 36 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQK-G-----VRVGLLTQSL 36 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCG
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEecCC
Confidence 4799999999999999999999 8 8999999873
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=88.27 E-value=0.46 Score=48.73 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+++|.|||+|.-|.+.|..|++. | ++|+++++++
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~-g-----~~V~liE~~~ 39 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQL-G-----FKTTCIEKRG 39 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSS
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 457899999999999999999999 8 8999999885
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=88.22 E-value=0.71 Score=44.66 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=33.7
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.++|.|.|+ |.+|.++|..|++. | ++|.+.+|+.+.++.
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~-G-----~~V~~~~r~~~~~~~ 70 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARR-G-----ARLVLSDVDQPALEQ 70 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 357999997 88999999999999 8 899999999876553
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.15 E-value=0.43 Score=49.43 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|+|||+|.-|.+.|..|++. | ++|.+++++.
T Consensus 26 ~dVvVIGgG~aGl~aA~~la~~-G-----~~V~liEk~~ 58 (491)
T 3urh_A 26 YDLIVIGSGPGGYVCAIKAAQL-G-----MKVAVVEKRS 58 (491)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 4699999999999999999999 8 8999999754
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=88.11 E-value=0.41 Score=50.17 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=31.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..+|.|||+|..|.++|..|++. | .+|++++++..
T Consensus 5 ~~dVlIVGaG~aGl~~A~~La~~-G-----~~v~viEr~~~ 39 (535)
T 3ihg_A 5 EVDVLVVGAGLGGLSTAMFLARQ-G-----VRVLVVERRPG 39 (535)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSSS
T ss_pred cCcEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 46899999999999999999999 8 89999998764
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=88.09 E-value=0.45 Score=46.68 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=30.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|+|||+|..|.+.|..|++. | ++|+++++..
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 47 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMN-N-----ISCRIIESMP 47 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCC
Confidence 36899999999999999999998 8 8999999865
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=88.08 E-value=0.41 Score=52.10 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..|+|||+|..|.+.|..|++. | .+|++++++.
T Consensus 265 ~DVvIIGgGiaGlsaA~~La~~-G-----~~V~vlEk~~ 297 (689)
T 3pvc_A 265 DDIAIIGGGIVSALTALALQRR-G-----AVVTLYCADA 297 (689)
T ss_dssp SSEEEECCSHHHHHHHHHHHTT-T-----CCEEEEESSS
T ss_pred CCEEEECCcHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 6899999999999999999999 8 8999999863
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=87.89 E-value=0.56 Score=44.75 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=32.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++
T Consensus 23 k~vlVTGas~gIG~~ia~~l~~~-G-----~~V~~~~r~~~~~~ 60 (277)
T 2rhc_B 23 EVALVTGATSGIGLEIARRLGKE-G-----LRVFVCARGEEGLR 60 (277)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 57888886 89999999999999 8 89999999976554
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=87.85 E-value=0.44 Score=48.62 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=31.4
Q ss_pred CceEEEECccHHHHHHHHHHHH---hcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~---~~G~~~~~~~V~l~~r~~~ 83 (461)
+++|+|||+|..|.+.|..|++ . | ++|+++++++.
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~-g-----~~Vtlie~~~~ 41 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGS-G-----HEVTLISANDY 41 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGG-G-----SEEEEECSSSE
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCC-c-----CEEEEEeCCCC
Confidence 4689999999999999999998 6 6 89999998864
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=87.82 E-value=0.49 Score=45.44 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=29.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.+|+|||+|.-|.+.|..|++. | ++|++++++
T Consensus 17 ~dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~ 48 (319)
T 3cty_A 17 FDVVIVGAGAAGFSAAVYAARS-G-----FSVAILDKA 48 (319)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESS
T ss_pred CcEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCC
Confidence 5799999999999999999999 8 899999874
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.80 E-value=0.48 Score=45.28 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=32.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++
T Consensus 30 k~vlVTGas~gIG~aia~~L~~~-G-----~~V~~~~r~~~~~~ 67 (276)
T 2b4q_A 30 RIALVTGGSRGIGQMIAQGLLEA-G-----ARVFICARDAEACA 67 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 57888986 89999999999999 8 89999999876544
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=87.78 E-value=0.52 Score=43.42 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=31.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
++|.|.|+ |.+|.+++..|++. | ++|.+.+|+.+.
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 37 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARA-G-----HTVIGIDRGQAD 37 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSSSS
T ss_pred cEEEEeCCCcHHHHHHHHHHHhC-C-----CEEEEEeCChhH
Confidence 47999997 99999999999999 8 899999998754
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=87.71 E-value=0.56 Score=45.22 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=30.8
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
||+|.|.|+ |.+|++++..|++. | ++|++.+|+..
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 36 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDE-G-----LSVVVVDNLQT 36 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEeCCCc
Confidence 479999986 99999999999998 8 99999998753
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=87.66 E-value=0.76 Score=44.98 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=35.8
Q ss_pred CCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 38 KAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 38 ~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
|.+-..++|.|.|+ |.+|.++|..|++. | ++|.+.+|+.+.++.
T Consensus 3 m~~l~~k~vlVTGas~gIG~~la~~l~~~-G-----~~Vv~~~r~~~~~~~ 47 (319)
T 3ioy_A 3 LKDFAGRTAFVTGGANGVGIGLVRQLLNQ-G-----CKVAIADIRQDSIDK 47 (319)
T ss_dssp CCCCTTCEEEEETTTSTHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred ccCCCCCEEEEcCCchHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 33333457999997 89999999999999 8 899999999876654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 461 | ||||
| d1txga1 | 155 | a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydro | 4e-12 | |
| d1n1ea1 | 160 | a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydro | 6e-10 | |
| d1n1ea2 | 189 | c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen | 3e-06 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 2e-04 | |
| d1txga2 | 180 | c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen | 0.003 |
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 155 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 61.6 bits (149), Expect = 4e-12
Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 26/165 (15%)
Query: 276 DLVTHEVMGGLKNVYAIGAAL--------TNESATSKSVYFAHCTSEMVFITHLLAEEPE 327
D++ E+ LKNVY+I A E + +K V +EM + +L + E
Sbjct: 1 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRE 60
Query: 328 KLAGPL-LADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIK--GKGMIQGISAVKAFYEL 384
G D T GRN G+ L KG + + ++ G G+++G + Y L
Sbjct: 61 TAFGLSGFGDLIATFRGGRNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRL 120
Query: 385 LSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE 429
S+ + +L +Y++L + + E
Sbjct: 121 SSKINADT---------------KLLDSIYRVLYEGLKVEEVLFE 150
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 160 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Score = 55.8 bits (134), Expect = 6e-10
Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 23/171 (13%)
Query: 276 DLVTHEVMGGLKNVYAIGAALT---NESATSKSVYFAHCTSEMV-FITHLLAEEPEKLAG 331
D V EV +KNV AIG+ + +++ E+ L +
Sbjct: 2 DTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGL 61
Query: 332 PLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLS 391
L D +T + + G+ K + +G++ L Q +
Sbjct: 62 AGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVK 121
Query: 392 VLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE----ALRDETMND 438
+ P+ +Y+I+ +++P A+ + L+DE +
Sbjct: 122 M---------------PLCHQIYEIVYKKKNPRDALADLLSCGLQDEGLPP 157
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Score = 45.2 bits (106), Expect = 3e-06
Identities = 32/235 (13%), Positives = 72/235 (30%), Gaps = 63/235 (26%)
Query: 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
+ V G+GA+G+ +L +V +W E+ +
Sbjct: 9 KAVVFGSGAFGTALAMVLSKK----CREV--CVWHM-------------------NEEEV 43
Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
R + + + +++ N+ T ++++A A+I+
Sbjct: 44 RLVNEKRENVLFLK--------------GVQLASNITFTS--------DVEKAYNGAEII 81
Query: 165 INGLPSTETKEVFEEISRYWKERITVP--VIISLAKGVEAELEAVPRIITPTQMINRATG 222
+ +P+ + FE+ ++ KG+E
Sbjct: 82 LFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERS-------TLKFPAEIIGEF 134
Query: 223 VPIENILYLGGPNIASEIYNKEYANARICG-----AEKWRKPLAKFLRRPHFTVW 272
+P + L GP+ A E+ + I A + ++ ++ R F W
Sbjct: 135 LPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRS--FVCW 187
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 40.3 bits (94), Expect = 2e-04
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 1/107 (0%)
Query: 101 EDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD 160
++V+ + + R + + C++++ LKV ++ +EAV
Sbjct: 82 KEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEG 141
Query: 161 ADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEAELEA 206
ADIVI LP ++ ++ + E V ++ A++
Sbjct: 142 ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK 188
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 36.2 bits (82), Expect = 0.003
Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 54/229 (23%)
Query: 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
+ +GAGA GS + L D+ +RIW G D + +
Sbjct: 2 IVSILGAGAMGSALSVPLVDN------GNEVRIW---GTEFDTEILKSISAGRE------ 46
Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
+ + L++ + +A++V
Sbjct: 47 -------------------------------HPRLGVKLNGVEIFWPEQLEKCLENAEVV 75
Query: 165 INGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP 224
+ G+ + V I Y K++ I+ ++KG+ ++ ++T + + R
Sbjct: 76 LLGVSTDGVLPVMSRILPYLKDQY----IVLISKGL---IDFDNSVLTVPEAVWRLKHDL 128
Query: 225 IENILYLGGPNIASEIYNKEYANARICGA-EKWRKPLAKFLRRPHFTVW 272
E + + GP IA E+ + E + + +F V
Sbjct: 129 RERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVE 177
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 461 | |||
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 100.0 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 100.0 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.97 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.95 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.72 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.7 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.64 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.64 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.54 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 99.46 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.44 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.39 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.36 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.29 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.29 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.19 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.16 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.16 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.15 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.14 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.09 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.98 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.69 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.61 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.61 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.57 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.56 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.54 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 98.47 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.46 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.43 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.38 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.37 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.34 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.33 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.27 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.21 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.21 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 98.07 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.05 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.04 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.02 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.0 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.94 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.93 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.9 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.89 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.87 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.79 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.74 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.72 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.68 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.65 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.62 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.59 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.57 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.54 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.48 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.46 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.4 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.36 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.35 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.34 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.32 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.3 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.28 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.22 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.21 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.15 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.14 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.13 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.1 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.01 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.86 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.77 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.69 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.67 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.62 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.6 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.58 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.55 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.51 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.45 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.41 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.41 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 96.28 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 96.25 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.23 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.14 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.07 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.04 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.01 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.0 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 95.97 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 95.96 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.85 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.84 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.81 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.8 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.74 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 95.73 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.71 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.69 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.6 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.51 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 95.43 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.43 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.38 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 95.36 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 95.35 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.35 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.33 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.3 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.27 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.17 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.11 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.1 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 95.09 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.08 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 95.04 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 94.98 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 94.94 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.91 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 94.86 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.82 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 94.74 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.74 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 94.67 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.67 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.51 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 94.49 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 94.49 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.31 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.28 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 94.15 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 94.02 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.81 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 93.74 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 93.66 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.51 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 93.46 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.38 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 93.38 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 93.27 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.23 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 93.22 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 93.14 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.76 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.74 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 92.54 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 92.36 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 92.33 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 92.3 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 92.2 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.12 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.87 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 91.59 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 91.58 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 91.53 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 91.5 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 91.44 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 91.27 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 91.18 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 91.02 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 90.82 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 90.78 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 90.76 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 90.68 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 90.38 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 90.23 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 90.14 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 89.72 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 89.63 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 89.6 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 89.53 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 89.49 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 89.39 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 89.37 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 88.63 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 88.51 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 88.34 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 88.29 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 88.12 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 88.02 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.74 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 87.71 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 87.41 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.14 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 87.12 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 86.91 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 86.89 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 86.85 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 86.82 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 86.78 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 86.74 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 86.5 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 86.15 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 86.13 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 85.56 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 85.46 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 85.34 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 85.27 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 85.21 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 85.2 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 84.91 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 84.84 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 84.83 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 84.74 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 84.74 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 84.62 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 84.55 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 84.45 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 84.33 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 84.31 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 84.3 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 84.3 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 84.19 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 84.17 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 83.9 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 83.87 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 83.72 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 83.55 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 83.49 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 83.33 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 83.28 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 83.27 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 83.2 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 82.95 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 82.76 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 82.72 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 82.7 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 82.31 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 82.16 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 82.16 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 82.11 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 82.1 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 81.96 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 81.91 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 81.81 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 81.79 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 81.78 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 81.74 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 81.73 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 81.66 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 81.6 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 81.59 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 81.54 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 81.52 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 81.1 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 80.96 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 80.73 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 80.62 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 80.33 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 80.28 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 80.25 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 80.12 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 80.09 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 80.06 |
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=100.00 E-value=4.2e-34 Score=259.09 Aligned_cols=149 Identities=23% Similarity=0.323 Sum_probs=138.8
Q ss_pred CChHHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc--ccchhH
Q 012547 275 GDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAW 348 (461)
Q Consensus 275 ~Di~gve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~ 348 (461)
+|++|+|+||++||+|||++|++++ ++|+++++++++++||.+|++++|++++|++++ |+||+++||+ .||||+
T Consensus 1 tD~~GvE~~galKNi~Aia~Gi~~gl~~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~~ 80 (160)
T d1n1ea1 1 TDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFT 80 (160)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHHH
Confidence 5999999999999999999999986 699999999999999999999999999999997 9999999995 799999
Q ss_pred HHHHHhcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHH
Q 012547 349 YGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAIL 428 (461)
Q Consensus 349 ~G~~l~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~ 428 (461)
+|+.+++|.+.+++++. .++++||+.|++.++++++++++ + +||+++||+||+++.+|.+++.
T Consensus 81 ~G~~l~~g~~~~e~~~~--~~~~vEG~~t~~~v~~l~~~~~i--------------~-~Pi~~~vy~Il~~~~~p~~~i~ 143 (160)
T d1n1ea1 81 VGKKLGKGLPIEEIQRT--SKAVAEGVATADPLMRLAKQLKV--------------K-MPLCHQIYEIVYKKKNPRDALA 143 (160)
T ss_dssp HHHHHHHTCCHHHHHHS--CCSCCHHHHHHHHHHHHHHHHTC--------------C-CHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHhccccHHHHHHh--ccchHHHHHHHHHHHHHHHHcCC--------------C-CcHHHHHHHHHhCcCCHHHHHH
Confidence 99999999998887653 35689999999999999999995 6 8999999999999999999999
Q ss_pred HHHhcccCCCcc
Q 012547 429 EALRDETMNDPR 440 (461)
Q Consensus 429 ~~l~~~~~~~~~ 440 (461)
.||.|+.+.|--
T Consensus 144 ~Lm~r~~k~E~~ 155 (160)
T d1n1ea1 144 DLLSCGLQDEGL 155 (160)
T ss_dssp HHTTSCSCBCCC
T ss_pred HHHCCCCCCCCC
Confidence 999999988753
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=8.8e-34 Score=255.61 Aligned_cols=144 Identities=24% Similarity=0.370 Sum_probs=133.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhhccC--------ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhccccch
Q 012547 276 DLVTHEVMGGLKNVYAIGAALTNE--------SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRN 346 (461)
Q Consensus 276 Di~gve~~galKNv~Ai~~Gi~~g--------~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN 346 (461)
|++|+|+||++||+|||++|+++| ++|+++++++++++||.+|++++|++++||+++ |+|||++||..|||
T Consensus 1 DviGvEi~galKNi~Aia~Gi~~gl~~g~~~~~~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~sRN 80 (155)
T d1txga1 1 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRGGRN 80 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTCHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCCCCc
Confidence 899999999999999999999985 259999999999999999999999999999997 99999999999999
Q ss_pred hHHHHHHhcCCChhhHhhhhc--CCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHH
Q 012547 347 AWYGQELAKGRLTLDLGDSIK--GKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPI 424 (461)
Q Consensus 347 ~~~G~~l~~g~~~~~~~~~~~--~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~ 424 (461)
|+||+++++|.+.+++.+.+. ...++||+.|++.++++++++++ + +||+++||+||+++.+|.
T Consensus 81 ~~~G~~l~~G~~~~e~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i--------------~-~Pi~~~vy~Il~~~~~~~ 145 (155)
T d1txga1 81 GMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINA--------------D-TKLLDSIYRVLYEGLKVE 145 (155)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHHSCCCHH
T ss_pred cHHHHHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC--------------C-CcHHHHHHHHHhCcCCHH
Confidence 999999999999888776553 23479999999999999999995 6 899999999999999999
Q ss_pred HHHHHHHhcc
Q 012547 425 QAILEALRDE 434 (461)
Q Consensus 425 ~~~~~~l~~~ 434 (461)
+++.+||.|.
T Consensus 146 ~~i~~L~~Rk 155 (155)
T d1txga1 146 EVLFELATFK 155 (155)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999999873
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.97 E-value=1.6e-30 Score=241.49 Aligned_cols=174 Identities=18% Similarity=0.346 Sum_probs=148.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
+||+|||+|+||+++|..|+++ | |+|++|+|+++.++.++. .+ +|+.|+|++.
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~-g-----~~V~l~~r~~~~~~~i~~---------~~-------~n~~yl~~~~----- 60 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKK-C-----REVCVWHMNEEEVRLVNE---------KR-------ENVLFLKGVQ----- 60 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTT-E-----EEEEEECSCHHHHHHHHH---------HT-------BCTTTSTTCB-----
T ss_pred ceEEEECCCHHHHHHHHHHHHc-C-----CeEEEEEecHHHHHHHhh---------cc-------cccccccccc-----
Confidence 5799999999999999999999 7 999999999988776443 22 5788888652
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHh-----hccCCCCEEEEEee
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYW-----KERITVPVIISLAK 198 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l-----~~~~~~~iIIs~tk 198 (461)
++ .++.+++|++++++++|+||+|||++.++++++++.+++ .+ +.++++++|
T Consensus 61 --l~------------------~~i~~t~~l~~a~~~ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~---~~~ii~~tK 117 (189)
T d1n1ea2 61 --LA------------------SNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEK---QVPVLVCTK 117 (189)
T ss_dssp --CC------------------TTEEEESCHHHHHTTCSCEEECSCHHHHHHHHHHHCHHHHHHHHHH---TCCEEECCC
T ss_pred --cc------------------cccccchhhhhccCCCCEEEEcCcHHHHHHHHHHHHhhhhhhhccC---CcEEEEEEC
Confidence 32 268999999999999999999999999999999998753 33 678999999
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcC--CCceEEec
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRR--PHFTVWDN 274 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~--~g~~v~~s 274 (461)
|++.. +..++++++.+.++. .++++++||+||.|+++|.|+.+++ +.+.+.++.++++|++ ..|++|.+
T Consensus 118 Gie~~-----t~~~~seii~e~~~~--~~~~vlsGP~~A~Ev~~~~pt~~viAs~~~~~a~~i~~lfst~~~~frvy~S 189 (189)
T d1n1ea2 118 GIERS-----TLKFPAEIIGEFLPS--PLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWAT 189 (189)
T ss_dssp SCCTT-----TCCCHHHHHTTTSCG--GGEEEEESSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHSCTTSSEEEEEE
T ss_pred CCccC-----CccchhhHHHHHhcc--cceEEEecCCcHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCCCEEEecC
Confidence 99877 688999999998863 5688999999999999999998876 5578889999999986 45999974
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=6.2e-28 Score=221.69 Aligned_cols=177 Identities=20% Similarity=0.247 Sum_probs=140.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch--hhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR--SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
|||+|||+|+||+++|..|+++ | ++|++|+|+.+ .++. ++..+ +|+.+...+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~-g-----~~V~l~~r~~~~~~~~~---------i~~~~-------~~~~~~~~~---- 54 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN-G-----NEVRIWGTEFDTEILKS---------ISAGR-------EHPRLGVKL---- 54 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH-C-----CEEEEECCGGGHHHHHH---------HHTTC-------CBTTTTBCC----
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEEecccHHHHHH---------Hhhhh-------hhhhhcchh----
Confidence 8999999999999999999999 8 99999998543 2332 33322 244332211
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
. ...+.+++|++++++++|+||+|||++.++++++++.+++++ ..+|+++||+.
T Consensus 55 ~----------------------~~~i~~~~~~~~~~~~ad~Ii~avps~~~~~~~~~l~~~l~~----~~ii~~tkg~~ 108 (180)
T d1txga2 55 N----------------------GVEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKD----QYIVLISKGLI 108 (180)
T ss_dssp C----------------------SEEEECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCS----CEEEECCCSEE
T ss_pred c----------------------cccccccccHHHHHhccchhhcccchhhhHHHHHhhcccccc----ceecccccCcc
Confidence 0 014677899999999999999999999999999999999874 57888999986
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecC
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
... ....++++.+.+..+....++++++|||||.|++.++|+.+++ +.+.+.++.++++|++++|++|.++
T Consensus 109 ~~~---~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vias~~~~~a~~i~~~f~~~~frvy~St 180 (180)
T d1txga2 109 DFD---NSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTT 180 (180)
T ss_dssp EET---TEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEES
T ss_pred ccc---cccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEEcCCHHHHHHHHHHHCCCCEEEEeCC
Confidence 542 1345688888887764445688999999999999999988776 5677889999999999999999874
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.72 E-value=1.1e-17 Score=148.72 Aligned_cols=149 Identities=17% Similarity=0.136 Sum_probs=113.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||++++..|.++ | ++|++|+|+.++.+.+.+ . +
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~-~-----~~i~v~~r~~~~~~~l~~--------~-------------~---------- 43 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT-P-----HELIISGSSLERSKEIAE--------Q-------------L---------- 43 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS-S-----CEEEEECSSHHHHHHHHH--------H-------------H----------
T ss_pred CEEEEEeccHHHHHHHHHHHhC-C-----CeEEEEcChHHhHHhhcc--------c-------------c----------
Confidence 8999999999999999999988 7 999999999876543211 0 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
++.++.|++++++++|+||+|||+++++++++++ ++ ++++||++.|+...
T Consensus 44 -----------------------g~~~~~~~~~~~~~~dvIilavkp~~~~~vl~~l----~~---~~~iis~~agi~~~ 93 (152)
T d2ahra2 44 -----------------------ALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPL----HF---KQPIISMAAGISLQ 93 (152)
T ss_dssp -----------------------TCCBCSSHHHHHHTCSEEEECSCGGGHHHHHTTS----CC---CSCEEECCTTCCHH
T ss_pred -----------------------ceeeechhhhhhhccceeeeecchHhHHHHhhhc----cc---ceeEecccccccHH
Confidence 2334578889999999999999999999887654 44 57899999998765
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeC--ChhHHHHHHHHhcCCCceEEec
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN 274 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~v~~s 274 (461)
.+++.++.. .+ .++.+||.+..++.+.... ..+. +++..+.++++|+.-|..+++.
T Consensus 94 ------------~l~~~l~~~-~~-ivr~mPN~~~~v~~g~~~~-~~~~~~~~~~~~~v~~l~~~~G~~~~v~ 151 (152)
T d2ahra2 94 ------------RLATFVGQD-LP-LLRIMPNMNAQILQSSTAL-TGNALVSQELQARVRDLTDSFGSTFDIS 151 (152)
T ss_dssp ------------HHHHHHCTT-SC-EEEEECCGGGGGTCEEEEE-EECTTCCHHHHHHHHHHHHTTEEEEECC
T ss_pred ------------HHHhhhccc-cc-chhhccchhhhcCccceEE-EeCCCCCHHHHHHHHHHHHhCCCEEEec
Confidence 367777632 23 5788999999887763322 2222 4678899999999999766554
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.70 E-value=2.6e-17 Score=145.79 Aligned_cols=149 Identities=18% Similarity=0.239 Sum_probs=113.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||++|+..|.++ | .++|.+|+|++++++.+.++ +
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~-~----~~~i~v~~r~~~~~~~l~~~---------------------~---------- 44 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQ-G----GYRIYIANRGAEKRERLEKE---------------------L---------- 44 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-C----SCEEEEECSSHHHHHHHHHH---------------------T----------
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-C----CCcEEEEeCChhHHHHhhhh---------------------c----------
Confidence 8999999999999999999988 6 38999999998766542210 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
++.+.++.++ +.++|+||+|||+++++++++++.+ . ++++||++.|+..+
T Consensus 45 -----------------------~~~~~~~~~~-v~~~Div~lavkP~~~~~v~~~l~~---~---~~~viS~~ag~~~~ 94 (152)
T d1yqga2 45 -----------------------GVETSATLPE-LHSDDVLILAVKPQDMEAACKNIRT---N---GALVLSVAAGLSVG 94 (152)
T ss_dssp -----------------------CCEEESSCCC-CCTTSEEEECSCHHHHHHHHTTCCC---T---TCEEEECCTTCCHH
T ss_pred -----------------------cccccccccc-ccccceEEEecCHHHHHHhHHHHhh---c---ccEEeecccCCCHH
Confidence 2344555544 6789999999999999999888753 2 57899999998764
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEe
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWD 273 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~ 273 (461)
.+++.++.. .+ .++.+||.+..++.|.... ..+ .+++..+.+.++|+.-|..+++
T Consensus 95 ------------~l~~~l~~~-~~-iir~mpn~p~~~~~g~t~~-~~~~~~~~~~~~~v~~l~~~~G~~~~v 151 (152)
T d1yqga2 95 ------------TLSRYLGGT-RR-IVRVMPNTPGKIGLGVSGM-YAEAEVSETDRRIADRIMKSVGLTVWL 151 (152)
T ss_dssp ------------HHHHHTTSC-CC-EEEEECCGGGGGTCEEEEE-ECCTTSCHHHHHHHHHHHHTTEEEEEC
T ss_pred ------------HHHHHhCcC-cc-eEeecccchhHhcCCcEEE-EeCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence 477887632 23 6789999999988774332 222 2467788999999998866654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.64 E-value=1.1e-15 Score=136.53 Aligned_cols=156 Identities=14% Similarity=0.096 Sum_probs=105.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.||+++|..|.++ | ++|+.|+|+++.++.+.+.+ .
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~-g-----~~V~~~d~~~~~~~~a~~~~---------------------~--------- 44 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR-G-----HYLIGVSRQQSTCEKAVERQ---------------------L--------- 44 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHTT---------------------S---------
T ss_pred CEEEEEeecHHHHHHHHHHHHC-C-----CEEEEEECCchHHHHHHHhh---------------------c---------
Confidence 8999999999999999999999 8 99999999987655321100 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
-....++. +++++||+||+|||...++++++++.+++++ +++|++++ +....
T Consensus 45 -----------------------~~~~~~~~-~~~~~~DiIilavp~~~~~~vl~~l~~~l~~---~~iv~~~~-s~~~~ 96 (165)
T d2f1ka2 45 -----------------------VDEAGQDL-SLLQTAKIIFLCTPIQLILPTLEKLIPHLSP---TAIVTDVA-SVKTA 96 (165)
T ss_dssp -----------------------CSEEESCG-GGGTTCSEEEECSCHHHHHHHHHHHGGGSCT---TCEEEECC-SCCHH
T ss_pred -----------------------cceeeeec-ccccccccccccCcHhhhhhhhhhhhhhccc---ccceeecc-ccchH
Confidence 01233444 5689999999999999999999999999887 67776654 33222
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEE-----EeCcchhHh-hhccCceEEEE--eCChhHHHHHHHHhcCCCceEEe
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILY-----LGGPNIASE-IYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWD 273 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~v-----lsGPn~a~e-v~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~~ 273 (461)
....+.+... .....-. .+||..+.. ...+.+..++. .++++..+.++++|+..|+++|.
T Consensus 97 ---------~~~~~~~~~~-~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~~~lG~~v~~ 164 (165)
T d2f1ka2 97 ---------IAEPASQLWS-GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYL 164 (165)
T ss_dssp ---------HHHHHHHHST-TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEE
T ss_pred ---------HHHHHHHhhc-ccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCEEEe
Confidence 1122333322 1111112 344444432 33454444333 34678889999999999999886
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.3e-16 Score=141.28 Aligned_cols=161 Identities=13% Similarity=0.106 Sum_probs=106.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|++. | |+|++|+|++++.+.++.. ....
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~-G-----~~V~~~~r~~~~~~~~~~~---------------------~~~~------- 46 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ-G-----HEVQGWLRVPQPYCSVNLV---------------------ETDG------- 46 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSEEEEEEE---------------------CTTS-------
T ss_pred CEEEEECcCHHHHHHHHHHHHC-C-----CceEEEEcCHHHhhhhccc---------------------cCCc-------
Confidence 8999999999999999999999 8 9999999998765431100 0000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.. .......+..++..++|+||++||+.+++++++.+.+++.+ ++.|++++||+...
T Consensus 47 -~~-------------------~~~~~~~~~~~~~~~~D~iii~vka~~~~~~~~~l~~~~~~---~~~Iv~~qNG~~~~ 103 (167)
T d1ks9a2 47 -SI-------------------FNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPV---TTPILLIHNGMGTI 103 (167)
T ss_dssp -CE-------------------EEEEEEESCHHHHHTCSEEEECSCGGGHHHHHHHHHTTSCT---TSCEEEECSSSCTT
T ss_pred -cc-------------------cccccccchhhhhcccceEEEeecccchHHHHHhhccccCc---ccEEeeccCcccHH
Confidence 00 01123334456678999999999999999999999999887 78999999999876
Q ss_pred cccccccCCHHHHHHhHhCCCC----CcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEe
Q 012547 204 LEAVPRIITPTQMINRATGVPI----ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~----~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (461)
. .+++. ..+. ...++...|+...+.+.|...+.......+..+.+.++|+.....+..
T Consensus 104 ~-----------~l~~~-~~~v~~g~~~~~~~~~~~~i~~~~~g~t~ig~~~~~~~~~~~l~~~l~~a~~~~~W 165 (167)
T d1ks9a2 104 E-----------ELQNI-QQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAW 165 (167)
T ss_dssp G-----------GGTTC-CSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHHHHHHTTSSCEEE
T ss_pred H-----------HHhhc-CCcEEEEEeeEeEEecCCEEEEeCCcCEEEeeCCCcchhHHHHHHHHHhhCCCCcc
Confidence 2 23331 1110 011233345555555555432221122344567788889877666543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.54 E-value=1.4e-14 Score=130.09 Aligned_cols=110 Identities=21% Similarity=0.255 Sum_probs=84.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
+||+|||+|+||+++|..|+++ | |+|.+|+|+++.++.++..+ .+..+.+...
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~-G-----~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~~----- 54 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK-G-----QSVLAWDIDAQRIKEIQDRG----------------AIIAEGPGLA----- 54 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHT----------------SEEEESSSCC-----
T ss_pred CEEEEECccHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHcC----------------CCchhhhhhh-----
Confidence 6999999999999999999999 8 99999999988776543211 1223333211
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
. .......++|++++++++|+||+|||+.+++++++++++++.+ +++|+ +++|....
T Consensus 55 --~-----------------~~~~~~~~~~~~e~~~~aD~iii~v~~~~~~~~~~~i~~~l~~---~~~iv-~~~g~~~~ 111 (184)
T d1bg6a2 55 --G-----------------TAHPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISE---GQLII-LNPGATGG 111 (184)
T ss_dssp --E-----------------EECCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TCEEE-ESSCCSSH
T ss_pred --h-----------------hhhhhhhhhhhHhHhcCCCEEEEEEchhHHHHHHHHhhhccCC---CCEEE-EeCCCCcc
Confidence 0 0024567889999999999999999999999999999999987 66554 67776543
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.44 E-value=2.6e-13 Score=120.72 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=102.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||.|.||.+||..|+++ | ++|++|+|+++.++.+.+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~-G-----~~V~~~d~~~~~~~~~~~--------------------------------- 41 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVSDRNPEAIADVIA--------------------------------- 41 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH---------------------------------
T ss_pred CEEEEEehhHHHHHHHHHHHHC-C-----CeEEEEeCCcchhHHHHH---------------------------------
Confidence 8999999999999999999999 8 999999999876553110
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHH---HHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF---EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl---~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.......+++++++++|+||+||| +.++++++ +.+.+.+++ ++++|.++..
T Consensus 42 ----------------------~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~---g~iiid~sT~ 96 (161)
T d1vpda2 42 ----------------------AGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVLIDMSSI 96 (161)
T ss_dssp ----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCT---TCEEEECSCC
T ss_pred ----------------------hhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhccCC---CCEEEECCCC
Confidence 023456788899999999999998 56788887 456777776 6888877743
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcE---EEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEE
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENI---LYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v---~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~ 272 (461)
.++. . ..+.+.+......+ .+..||..|. .|..+ .+++++++..++++.+|+.-+-+++
T Consensus 97 -~p~~-----~----~~~~~~~~~~g~~~vdapv~gg~~~a~---~g~l~-~~~gG~~~~~~~~~~il~~~~~~i~ 158 (161)
T d1vpda2 97 -APLA-----S----REISDALKAKGVEMLDAPVSGGEPKAI---DGTLS-VMVGGDKAIFDKYYDLMKAMAGSVV 158 (161)
T ss_dssp -CHHH-----H----HHHHHHHHTTTCEEEECCEESHHHHHH---HTCEE-EEEESCHHHHHHHHHHHHTTEEEEE
T ss_pred -CHHH-----H----HHHHHHHHHcCCceecccccCChhHHh---cCCeE-EEEcCCHHHHHHHHHHHHHhcCceE
Confidence 3331 1 22222221111121 1333344443 34333 3567888888999999987776654
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.39 E-value=7.6e-13 Score=117.86 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=102.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|+||+|||.|.||++||..|+++ | ++|.+|+|+++..+.+. .
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~-g-----~~v~~~d~~~~~~~~~~--------~------------------------ 42 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA-G-----YLLNVFDLVQSAVDGLV--------A------------------------ 42 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHH--------H------------------------
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC-C-----CeEEEEECchhhhhhhh--------h------------------------
Confidence 47999999999999999999999 8 99999999986544310 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHHH---HHHHhhccCCCCEEEEEee
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAK 198 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~~---i~~~l~~~~~~~iIIs~tk 198 (461)
.......++.+++..+|+|++|+|.. ..++++.. +.+.+.+ ++++|.++.
T Consensus 43 -----------------------~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~~~~l~~---g~iiid~st 96 (162)
T d3cuma2 43 -----------------------AGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAP---GTLVLECST 96 (162)
T ss_dssp -----------------------TTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCHHHHSCT---TCEEEECSC
T ss_pred -----------------------hhccccchhhhhccccCeeeecccchhhHHHHHhccccccccCCC---CCEEEECCC
Confidence 02344567888999999999999965 56666654 4555665 678887664
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEE
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~ 272 (461)
. .++. .....+.+.+ .+.......+..||..|. .|..+ .+++++++..++++.+|+.-+.+++
T Consensus 97 ~-~p~~-----~~~~~~~~~~-~gi~~~dapv~Gg~~~a~---~G~l~-~~~gG~~~~~~~~~~il~~~~~~v~ 159 (162)
T d3cuma2 97 I-APTS-----ARKIHAAARE-RGLAMLDAPVSGGTAGAA---AGTLT-FMVGGDAEALEKARPLFEAMGRNIF 159 (162)
T ss_dssp C-CHHH-----HHHHHHHHHH-TTCEEEECCEESCHHHHH---HTCEE-EEEESCHHHHHHHHHHHHHHEEEEE
T ss_pred C-CHHH-----HHHHHHHHHH-CCCcEEecccccCccccc---cCCeE-EEecCCHHHHHHHHHHHHHHcCccE
Confidence 3 3331 1222333332 232111223556666654 44332 3567888888999999876665554
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.36 E-value=7.1e-12 Score=115.38 Aligned_cols=180 Identities=17% Similarity=0.094 Sum_probs=116.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.+|.++|..||++ | ++|+.||.+++.++.+++ +. .+.+.+...
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~-g-----~~V~g~D~n~~~i~~ln~---------g~--------~p~~e~~~~----- 52 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR-G-----HEVIGVDVSSTKIDLINQ---------GK--------SPIVEPGLE----- 52 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHT---------TC--------CSSCCTTHH-----
T ss_pred CEEEEECCCHhHHHHHHHHHhC-C-----CcEEEEeCCHHHHHHhcc---------cC--------Ccccchhhh-----
Confidence 8999999999999999999999 8 999999999988776442 21 112222211
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------hhHHHHHHHHHHHhhccCCCCEE
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------~~~~~vl~~i~~~l~~~~~~~iI 193 (461)
+.+...... ..+.+++|.+++++++|++|+|||. ..+..+++.+...++...++++|
T Consensus 53 ------~~l~~~~~~-------~~~~~~~~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~li 119 (202)
T d1mv8a2 53 ------ALLQQGRQT-------GRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTV 119 (202)
T ss_dssp ------HHHHHHHHT-------TCEEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEE
T ss_pred ------hhhhhhhcc-------cccccCCCHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcce
Confidence 111111111 2578899999999999999999986 35777888877765532114444
Q ss_pred EEEeecCccccccccccCCHHHHHHhHhCCC-CCcEEEEeCcchhHhhhc----cCceEEEEe-CChhHHHHHHHHhcCC
Q 012547 194 ISLAKGVEAELEAVPRIITPTQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARIC-GAEKWRKPLAKFLRRP 267 (461)
Q Consensus 194 Is~tkGi~~~~~~~~~~~~~se~i~~~lg~~-~~~v~vlsGPn~a~ev~~----g~~~~~~~~-~~~~~~~~l~~ll~~~ 267 (461)
| +...+.+.+ +......++.+..+.. ...+.+...|.+..+... ..+...+++ .+++..+.++++|+.-
T Consensus 120 i-i~STv~pGt----t~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i 194 (202)
T d1mv8a2 120 V-VRSTVLPGT----VNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYREL 194 (202)
T ss_dssp E-ECSCCCTTH----HHHTHHHHHHHHHSCCBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTS
T ss_pred e-eccccCCcc----hhhhhhhhhhccccccccccccchhhhhhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 4 444555542 2233334455544422 124567899999876442 224444554 5677888999999765
Q ss_pred Cc
Q 012547 268 HF 269 (461)
Q Consensus 268 g~ 269 (461)
..
T Consensus 195 ~~ 196 (202)
T d1mv8a2 195 DA 196 (202)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.29 E-value=1.3e-11 Score=109.62 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=99.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
+||+|||+|.||+++|..|.++ |+ ..+|+.|+++++..+...+ .+ .
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~-g~---~~~I~~~D~~~~~~~~a~~--------~~-------------~--------- 47 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRS-GF---KGKIYGYDINPESISKAVD--------LG-------------I--------- 47 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-TC---CSEEEEECSCHHHHHHHHH--------TT-------------S---------
T ss_pred CEEEEEccCHHHHHHHHHHHhc-CC---CeEEEEEECChHHHHHHHH--------hh-------------c---------
Confidence 4699999999999999999988 72 1478888888776553111 00 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHH-HHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQ-EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~-~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
-....++.. ....++|+||+|+|.+.+.++++++.+++++ +++++.++..-..
T Consensus 48 -----------------------~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~~l~~~~~~---~~ii~d~~s~k~~ 101 (171)
T d2g5ca2 48 -----------------------IDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSE---DATVTDQGSVKGK 101 (171)
T ss_dssp -----------------------CSEEESCGGGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCT---TCEEEECCSCCTH
T ss_pred -----------------------chhhhhhhhhhhccccccccccCCchhhhhhhhhhhccccc---cccccccccccHH
Confidence 012223333 2345799999999999999999999999887 6777766632221
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEe-----CcchhHh-hhccCceEEEE--eCChhHHHHHHHHhcCCCceEE
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLG-----GPNIASE-IYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVW 272 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vls-----GPn~a~e-v~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~ 272 (461)
..+.+.+.++......-.+. ||..+.+ +..+.+..++. ..+++..+.++++|+..|-++.
T Consensus 102 ----------~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~ 169 (171)
T d2g5ca2 102 ----------LVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVE 169 (171)
T ss_dssp ----------HHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEE
T ss_pred ----------HHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 12334444432100111223 4444432 33454433332 2356778999999998887765
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2e-11 Score=111.87 Aligned_cols=180 Identities=14% Similarity=0.204 Sum_probs=115.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.||+|||+|.||+.+|..++.+ | ++|++|+++++.++...+ .+...+.... +. .+....
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~-G-----~~V~l~D~~~~~l~~a~~-~i~~~l~~~~-------~~-~~~~~~------ 63 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAAT-G-----HTVVLVDQTEDILAKSKK-GIEESLRKVA-------KK-KFAENP------ 63 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH-HHHHHHHHHH-------HT-TSSSCH------
T ss_pred EEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEECChHHHHHHHh-hHHHHHHHHH-------Hh-hhhccc------
Confidence 6999999999999999999999 8 999999999987765432 1111111100 00 001000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
...++...+ .+.++..++|+.+++.+||+||.|+|.+ ..++++.+|.+++++ ++++.|.+.++.
T Consensus 64 --~~~~~~~~~---------~l~~i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~---~~ilasnTS~l~ 129 (192)
T d1f0ya2 64 --KAGDEFVEK---------TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAE---HTIFASNTSSLQ 129 (192)
T ss_dssp --HHHHHHHHH---------HHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCT---TCEEEECCSSSC
T ss_pred --hhhHHHHHH---------HHhhccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhccc---CceeeccCcccc
Confidence 000000000 0126788999999999999999999985 688999999999988 788888887766
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEE--eCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCC
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vl--sGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
.. + +.+.+..| .++..+ ..|-.. -....++.+ .+++..+.+.+++...|.......|
T Consensus 130 i~-----------~-la~~~~~p-~r~ig~HffnP~~~-----~~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D 190 (192)
T d1f0ya2 130 IT-----------S-IANATTRQ-DRFAGLHFFNPVPV-----MKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD 190 (192)
T ss_dssp HH-----------H-HHTTSSCG-GGEEEEEECSSTTT-----CCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred cc-----------h-hhhhccCH-hHEEeeccccccCc-----ccEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence 54 3 55555543 343322 223221 111222222 2567888999999888887776666
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.19 E-value=1e-10 Score=102.25 Aligned_cols=144 Identities=24% Similarity=0.263 Sum_probs=100.0
Q ss_pred CCCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 41 GDPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 41 ~~~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
..++||+||| .|.||+.||..|.++ | ++|.+|+|+....
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~-G-----~~V~~~d~~~~~~---------------------------------- 46 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRAS-G-----YPISILDREDWAV---------------------------------- 46 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTT-T-----CCEEEECTTCGGG----------------------------------
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHc-C-----CCcEecccccccc----------------------------------
Confidence 3557999999 899999999999999 8 9999999876311
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.++.+.++|++++++|...+..++.++.+++++ +++++.++ +
T Consensus 47 ----------------------------------~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~---~~iiiD~~-S 88 (152)
T d2pv7a2 47 ----------------------------------AESILANADVVIVSVPINLTLETIERLKPYLTE---NMLLADLT-S 88 (152)
T ss_dssp ----------------------------------HHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TSEEEECC-S
T ss_pred ----------------------------------cchhhhhccccccccchhhheeeeecccccccC---CceEEEec-c
Confidence 112356789999999999999999999999887 67777665 3
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEe
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (461)
+... +.+.+.+..+........+.||..... .+.....+.+.+.+..+++.++|+..|-+++-
T Consensus 89 vk~~---------~~~~~~~~~~~~~v~~hP~~Gp~~~~~--~g~~~v~~~g~~~~~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 89 VKRE---------PLAKMLEVHTGAVLGLHPMFGADIASM--AKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp CCHH---------HHHHHHHHCSSEEEEEEECSCTTCSCC--TTCEEEEEEEECGGGTHHHHHHHHHTTCEEEE
T ss_pred cCHH---------HHHHHHHHccCCEEEecccCCCccccc--CCcEEEEecCCCHHHHHHHHHHHHHhCCEEEe
Confidence 3322 234455544321001134566654321 23222223355677789999999999888763
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.16 E-value=9.3e-11 Score=102.75 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=67.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||.|.||+++|..|.++ | ++|++|+++........ .. +
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~-g-----~~v~~~~~~~~~~~~~~--------~~----------------~------- 43 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR-G-----VEVVTSLEGRSPSTIER--------AR----------------T------- 43 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-T-----CEEEECCTTCCHHHHHH--------HH----------------H-------
T ss_pred CEEEEEcHHHHHHHHHHHHHHC-C-----CeEEEEcCchhHHHHHh--------hh----------------c-------
Confidence 8999999999999999999999 8 99999998875433200 00 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
..+..+++++++++|+||+|||.+...+++.++.+.++ +.+|.++
T Consensus 44 ------------------------~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~~~~~~~-----~~~id~s 88 (152)
T d1i36a2 44 ------------------------VGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHVR-----GIYVDIN 88 (152)
T ss_dssp ------------------------HTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTCC-----SEEEECS
T ss_pred ------------------------ccccccHHHHHhhcCeEEEEecCchHHHHHHhhcccCC-----ceeeccC
Confidence 11234567889999999999999998888888877653 4566555
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=2.1e-12 Score=113.16 Aligned_cols=146 Identities=14% Similarity=0.044 Sum_probs=86.7
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCCc
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRT 125 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~ 125 (461)
|+|||+|+||.+|+..|.+. + +.+.+|+|+.++++.+.+ . .
T Consensus 2 IgfIG~G~mg~~l~~~L~~~-~-----~~~~v~~R~~~~~~~l~~--------~--------------~----------- 42 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDR-Y-----EIGYILSRSIDRARNLAE--------V--------------Y----------- 42 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----------CCCEECSSHHHHHHHHH--------H--------------T-----------
T ss_pred EEEEeCcHHHHHHHHHHHhC-C-----CEEEEEeCChhhhcchhh--------c--------------c-----------
Confidence 78999999999999999766 4 555799999887664211 0 0
Q ss_pred cchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccc
Q 012547 126 LHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE 205 (461)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~ 205 (461)
... ..+++++++.+|+||+|||+++++++++++. .+ ++++|+++.+...+.
T Consensus 43 ---------------------~~~-~~~~~~~~~~~DiVil~v~d~~i~~v~~~l~---~~---~~ivi~~s~~~~~~~- 93 (153)
T d2i76a2 43 ---------------------GGK-AATLEKHPELNGVVFVIVPDRYIKTVANHLN---LG---DAVLVHCSGFLSSEI- 93 (153)
T ss_dssp ---------------------CCC-CCSSCCCCC---CEEECSCTTTHHHHHTTTC---CS---SCCEEECCSSSCGGG-
T ss_pred ---------------------ccc-ccchhhhhccCcEEEEeccchhhhHHHhhhc---cc---ceeeeecccchhhhh-
Confidence 001 1234566889999999999999999988774 23 678999987776541
Q ss_pred cccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccC-ceEEEEeCChhHHHHHHHHhcCCCceEEe
Q 012547 206 AVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKE-YANARICGAEKWRKPLAKFLRRPHFTVWD 273 (461)
Q Consensus 206 ~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~-~~~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (461)
++.... ..+..+..|.......... ...+.++++++..+.++++|+..|.+++.
T Consensus 94 -----------l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~ 148 (153)
T d2i76a2 94 -----------FKKSGR---ASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFV 148 (153)
T ss_dssp -----------GCSSSE---EEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEE
T ss_pred -----------hhhhcc---ccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEEE
Confidence 222110 0111222222222111111 12234567788889999999887765554
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.15 E-value=1.5e-10 Score=105.32 Aligned_cols=176 Identities=14% Similarity=0.128 Sum_probs=111.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..||+|||+|.||+.+|..++.+ | ++|++|+++++.++..... +...+.... ......+..
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~-G-----~~V~l~D~~~~~l~~~~~~-i~~~l~~~~-------~~~~~~~~~---- 64 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASK-G-----TPILMKDINEHGIEQGLAE-AAKLLVGRV-------DKGRMTPAK---- 64 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHHH-HHHHHHHHH-------TTTSSCHHH----
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHhhhhhh-hhhhHHhhh-------cccccchhh----
Confidence 346899999999999999999999 8 9999999999877653221 111111100 000000100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
+++. ...+..+++.+ ++.+||+||.|+|.. ..++++.+|.+++.+ ++++.|.+.+
T Consensus 65 ------~~~~-------------~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~lf~~l~~~~~~---~~IiaSnTS~ 121 (186)
T d1wdka3 65 ------MAEV-------------LNGIRPTLSYG-DFGNVDLVVEAVVENPKVKQAVLAEVENHVRE---DAILASNTST 121 (186)
T ss_dssp ------HHHH-------------HHHEEEESSST-TGGGCSEEEECCCSCHHHHHHHHHHHHTTSCT---TCEEEECCSS
T ss_pred ------hhhh-------------hceeecccccc-cccccceeeeeecchHHHHHHHHHHHHhhcCC---CeeEEecccc
Confidence 0000 11467777775 489999999999975 688899999999988 7888888877
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEE--eCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecC
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vl--sGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
+... + +.+.+..| .++..+ ..|-+ ......++.+ .+++..+.+.+++...|.......
T Consensus 122 l~i~-----------~-la~~~~~p-~r~~g~Hf~nP~~-----~~~lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v~ 183 (186)
T d1wdka3 122 ISIS-----------L-LAKALKRP-ENFVGMHFFNPVH-----MMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVN 183 (186)
T ss_dssp SCHH-----------H-HGGGCSCG-GGEEEEECCSSTT-----TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccHH-----------H-HHHhccCc-hheEeeccccCcc-----cCCeEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 7654 2 55555543 343322 12222 1112222322 356778888888888887766655
Q ss_pred C
Q 012547 276 D 276 (461)
Q Consensus 276 D 276 (461)
|
T Consensus 184 d 184 (186)
T d1wdka3 184 D 184 (186)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.14 E-value=5.5e-11 Score=106.87 Aligned_cols=157 Identities=12% Similarity=0.109 Sum_probs=101.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.+|+|||.|+||++||..|.++ | ++|.+|+|++++++.+.+++ ....
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~~~---------------------~~~~------ 49 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH-G-----FVVCAFNRTVSKVDDFLANE---------------------AKGT------ 49 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHHHTT---------------------TTTS------
T ss_pred CcEEEEeEhHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHHhc---------------------cccc------
Confidence 5799999999999999999999 8 99999999998776532211 0000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.. .......++.+++.++|.+|+++|+ ..+.++++.+.+.+++ ++++|.++..-..
T Consensus 50 -~~-------------------~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~v~~~l~~~~~~---g~iiid~sT~~~~ 106 (176)
T d2pgda2 50 -KV-------------------LGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDI---GDIIIDGGNSEYR 106 (176)
T ss_dssp -SC-------------------EECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHHHHHHHCCT---TCEEEECSCCCHH
T ss_pred -cc-------------------cchhhhhhhhhhhcccceEEEecCchHHHHHHHHHHHhcccc---CcEEEecCcchhH
Confidence 00 0112234566778899999999986 6889999999998887 6788877643322
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCC
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPH 268 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g 268 (461)
. .....+.+.+ .+.......+..||.-|. .|. + ++++++++..+.++.+|+.-+
T Consensus 107 ~------~~~~~~~~~~-~g~~~ldapvsGg~~~A~---~G~-~-~~~gG~~~~~~~~~~il~~~~ 160 (176)
T d2pgda2 107 D------TMRRCRDLKD-KGILFVGSGVSGGEDGAR---YGP-S-LMPGGNKEAWPHIKAIFQGIA 160 (176)
T ss_dssp H------HHHHHHHHHH-TTCEEEEEEEESHHHHHH---HCC-E-EEEEECTTTHHHHHHHHHHHS
T ss_pred H------HHHHHHHHHh-cCCceeccccccCccccc---CCc-E-EEcCCCHHHHHHHHHHHHHHh
Confidence 2 1222233322 232112223445565554 343 3 356777777888888876433
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.09 E-value=1.6e-10 Score=103.52 Aligned_cols=154 Identities=9% Similarity=0.130 Sum_probs=95.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||.|.||.+||..|+++ | ++|.+|+|++++.+.+.++ +. +....+
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~-G-----~~V~~~dr~~~~~~~l~~~--------~~--------~~~~~~-------- 51 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK-G-----FKVAVFNRTYSKSEEFMKA--------NA--------SAPFAG-------- 51 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHHH--------TT--------TSTTGG--------
T ss_pred CEEEEEeehHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHHc--------CC--------cccccc--------
Confidence 8999999999999999999999 8 9999999999887653321 10 000100
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecC---HHHHhcCCCEEEEcCC-chhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTN---LQEAVWDADIVINGLP-STETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d---l~~av~~aDiIIiaVp-s~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
+.....+ .-..+..++.++++++ ...+..++..+...+.+ +++++.+++.
T Consensus 52 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~iii~~st~ 105 (178)
T d1pgja2 52 -----------------------NLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEK---GDILVDTGNA 105 (178)
T ss_dssp -----------------------GEEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCT---TCEEEECCCC
T ss_pred -----------------------chhhhhhhhHHHHhcccceEEEEeecCcchhhhhhhhhhhhccc---cceecccCcc
Confidence 1222222 2234567778877776 46788889999888887 6788877754
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcE--EEEe-CcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCC
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENI--LYLG-GPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPH 268 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v--~vls-GPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g 268 (461)
.... +..+.+.+......+ +.++ +|..|. .|. + ++++++++..+.++.+|+.-+
T Consensus 106 ~~~~----------~~~~~~~l~~~~~~~ldapv~g~~~~a~---~g~-~-~mvgG~~~~~~~v~pil~~~~ 162 (178)
T d1pgja2 106 HFKD----------QGRRAQQLEAAGLRFLGMGISGGEEGAR---KGP-A-FFPGGTLSVWEEIRPIVEAAA 162 (178)
T ss_dssp CHHH----------HHHHHHHHHTTTCEEEEEEEESHHHHHH---HCC-E-EEEEECHHHHHHHHHHHHHHS
T ss_pred chhH----------HHHHHHHHhhcceeEecccccCCcchhc---CCc-E-EEeeCCHHHHHHHHHHHHHHh
Confidence 3332 122333332111111 2223 333332 343 3 467788888888888886444
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.98 E-value=3.1e-09 Score=93.37 Aligned_cols=194 Identities=11% Similarity=0.056 Sum_probs=109.7
Q ss_pred ceEEEE-CccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGV-GAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~II-GaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|| |+|.||+++|..|+++ | |+|.+|+|++++++.+.++ ++.. .+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~-G-----~~V~l~~R~~e~~~~l~~~-----i~~~-----------~~~-------- 50 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL-G-----HEIVVGSRREEKAEAKAAE-----YRRI-----------AGD-------- 50 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT-T-----CEEEEEESSHHHHHHHHHH-----HHHH-----------HSS--------
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHH-----HHhc-----------CCC--------
Confidence 899999 7899999999999999 8 9999999999887764321 1111 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
......+........+....+++.....+.+..+...... ............
T Consensus 51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 102 (212)
T d1jaya_ 51 ------------------------ASITGMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILRE----KIVVSPLVPVSR 102 (212)
T ss_dssp ------------------------CCEEEEEHHHHHHHCSEEEECSCHHHHHHHHHHTHHHHTT----SEEEECCCCEEC
T ss_pred ------------------------ceEEeeccccccchhhhhhhheeeeccchHHHHhhhhhcc----cccccccccccc
Confidence 1112233444455678888888877777666555543322 222222222111
Q ss_pred cccc--ccccCCHHHHHHhHhCCCCCc-EEEEeCcchhHhhh-ccCceEEEEeCChhHHHHH-HHHhcCCCceEEecCCh
Q 012547 203 ELEA--VPRIITPTQMINRATGVPIEN-ILYLGGPNIASEIY-NKEYANARICGAEKWRKPL-AKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 203 ~~~~--~~~~~~~se~i~~~lg~~~~~-v~vlsGPn~a~ev~-~g~~~~~~~~~~~~~~~~l-~~ll~~~g~~v~~s~Di 277 (461)
.... ..+.....+.....+...... .....++....+.. ...+....++.++.....+ ..+....+|+.+ |+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~a~~~~~~~~~~~~g~~~~---~~ 179 (212)
T d1jaya_ 103 GAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPL---DA 179 (212)
T ss_dssp CTTCCEECCSSCHHHHHHHHHTCSCEEECCTTCCHHHHHCTTCCCCEEEEEEESCHHHHHHHHHHHHHSTTEEEE---EE
T ss_pred ccccccccccchhhhhhhhhhhhhcccccceeecHHHhcCcccccCccceEEeCCHHHHHHHHHHHhhCCCeEEE---Ee
Confidence 1000 013445566666666432110 01112333333333 3333444456665555444 446667899876 33
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 012547 278 VTHEVMGGLKNVYAIGAALTN 298 (461)
Q Consensus 278 ~gve~~galKNv~Ai~~Gi~~ 298 (461)
=+++.++.++|+.++.++++.
T Consensus 180 G~l~~a~~~e~~~~l~~~~~~ 200 (212)
T d1jaya_ 180 GPLSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp ESGGGHHHHHTHHHHHHHHHH
T ss_pred ChHHHHHHHHhHHHHHHHHHH
Confidence 346678888888877777654
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.69 E-value=3.3e-08 Score=89.47 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=59.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.+|..+|..++ . | ++|+.||.+++.++.++ .+. .+.+.+++.
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~-g-----~~V~g~Din~~~v~~l~---------~g~--------~p~~e~~l~----- 51 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-L-Q-----NEVTIVDILPSKVDKIN---------NGL--------SPIQDEYIE----- 51 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-T-T-----SEEEEECSCHHHHHHHH---------TTC--------CSSCCHHHH-----
T ss_pred CEEEEECCChhHHHHHHHHH-C-C-----CcEEEEECCHHHHHHHh---------hcc--------cccchhhHH-----
Confidence 89999999999999998886 5 6 99999999998877643 221 122222221
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~ 171 (461)
+++... ...+..+++...+..++|++++|||+.
T Consensus 52 ------~~~~~~---------~~~~~~~~~~~~~~~~~~ii~v~vpt~ 84 (196)
T d1dlja2 52 ------YYLKSK---------QLSIKATLDSKAAYKEAELVIIATPTN 84 (196)
T ss_dssp ------HHHHHS---------CCCEEEESCHHHHHHHCSEEEECCCCC
T ss_pred ------HHhhhh---------hhhhhccchhhhhhhccccccccCCcc
Confidence 111110 124667778888889999999999873
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.61 E-value=2.2e-07 Score=80.95 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=82.3
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
...+..||+|||+|.+|+++|..|+.. |+. .++.|+|++++.++.... + ++... .+..
T Consensus 2 ~~~~~~KI~IiGaG~vG~~~a~~l~~~-~l~---~el~L~Di~~~~~~g~a~----D-l~~~~----------~~~~--- 59 (148)
T d1ldna1 2 KNNGGARVVVIGAGFVGASYVFALMNQ-GIA---DEIVLIDANESKAIGDAM----D-FNHGK----------VFAP--- 59 (148)
T ss_dssp TTTTSCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHHHHHH----H-HHHHT----------TSSS---
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhc-CCC---ceEEEEeeccccccchhc----c-HhhCc----------cccC---
Confidence 344567999999999999999999998 742 479999999876543111 1 11100 0000
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEE-ecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHH
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKV-VTNLQEAVWDADIVINGLPS----------------TETKEVFEEIS 181 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~ 181 (461)
..+.+ +.|. +++++||+||++.-. ..++++.++|.
T Consensus 60 ---------------------------~~~~~~~~d~-~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~ 111 (148)
T d1ldna1 60 ---------------------------KPVDIWHGDY-DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVM 111 (148)
T ss_dssp ---------------------------SCCEEEECCG-GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CCeEEEECCH-HHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHH
Confidence 12333 4555 568999999997732 13566677777
Q ss_pred HHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 182 RYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 182 ~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
++.. +.+++.++|-++. +..++++..|.|..++
T Consensus 112 ~~~p----~a~~ivvtNPvd~----------~t~~~~k~sg~p~~rV 144 (148)
T d1ldna1 112 ASGF----QGLFLVATNPVDI----------LTYATWKFSGLPHERV 144 (148)
T ss_dssp HHTC----CSEEEECSSSHHH----------HHHHHHHHHTCCGGGE
T ss_pred hhCC----CceEEEecCccHH----------HHHHHHHHHCcChhhe
Confidence 7654 5678888876654 3466778877665553
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.61 E-value=2.4e-07 Score=80.62 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=78.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+.|||+|||+|.+|.++|..|+.. |.. .+|.++|++++.++... .++ +.. ....
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~-~~~---~elvL~D~~~~~~~g~a----~Dl-~~a-----------~~~~------ 57 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQ-GIA---EEFVIVDVVKDRTKGDA----LDL-EDA-----------QAFT------ 57 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHHHHH----HHH-HGG-----------GGGS------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-CCC---cEEEEeecccchhHHHH----HHH-hcc-----------cccc------
Confidence 368999999999999999999998 632 58999999987654211 011 100 0000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch----------------hHHHHHHHHHHHhh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWK 185 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~----------------~~~~vl~~i~~~l~ 185 (461)
......+.|+++ +++||+||++.... .++++.++|.++..
T Consensus 58 -----------------------~~~~~~~~d~~~-~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p 113 (146)
T d1ez4a1 58 -----------------------APKKIYSGEYSD-CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGF 113 (146)
T ss_dssp -----------------------CCCEEEECCGGG-GTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------------------CCceEeeccHHH-hccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 013445677764 79999999987431 24555666665533
Q ss_pred ccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 186 ERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
+.+++.++|-.+. +..++++..+.|..+
T Consensus 114 ----~aivivvtNPvdv----------~t~~~~k~sg~p~~r 141 (146)
T d1ez4a1 114 ----DGIFLVAANPVDI----------LTYATWKFSGFPKER 141 (146)
T ss_dssp ----CSEEEECSSSHHH----------HHHHHHHHHCCCGGG
T ss_pred ----CcEEEEeCCccHH----------HHHHHHHHHCcCccc
Confidence 5678878875543 346677777765444
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.57 E-value=1e-07 Score=83.22 Aligned_cols=141 Identities=20% Similarity=0.217 Sum_probs=85.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (461)
||+|||.|+||.+||..|.++ | +.| +|+|+.++.+... ...
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~-g-----~~~-~~~~~~~~~~~~~--------~~~------------------------ 42 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARR-F-----PTL-VWNRTFEKALRHQ--------EEF------------------------ 42 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTT-S-----CEE-EECSSTHHHHHHH--------HHH------------------------
T ss_pred eEEEEeHHHHHHHHHHHHHhC-C-----CEE-EEeCCHHHHHHHH--------HHc------------------------
Confidence 799999999999999999988 6 654 7888876543210 000
Q ss_pred ccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.. .... .+.+.++|++|+++|. ..+..+...+.+.+.+ ++++|.++ .+.++
T Consensus 43 ----------------------~~-~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~~---~~~iid~s-T~~p~ 94 (156)
T d2cvza2 43 ----------------------GS-EAVP-LERVAEARVIFTCLPTTREVYEVAEALYPYLRE---GTYWVDAT-SGEPE 94 (156)
T ss_dssp ----------------------CC-EECC-GGGGGGCSEEEECCSSHHHHHHHHHHHTTTCCT---TEEEEECS-CCCHH
T ss_pred ----------------------CC-cccc-cccccceeEEEecccchhhhhhhhccccccccc---cccccccc-cCCHH
Confidence 00 1122 2446789999999986 4666677777776665 56666555 33333
Q ss_pred cccccccCCHHHHHHhHhCCCCCc---EEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhc
Q 012547 204 LEAVPRIITPTQMINRATGVPIEN---ILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR 265 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~---v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~ 265 (461)
. +..+.+.+...... ..+..||.-|. .|..+ ++++++++..+.++.+|+
T Consensus 95 ~---------~~~~~~~~~~~gi~~ldapVsGg~~~A~---~G~L~-~~vgG~~~~~~~~~p~L~ 146 (156)
T d2cvza2 95 A---------SRRLAERLREKGVTYLDAPVSGGTSGAE---AGTLT-VMLGGPEEAVERVRPFLA 146 (156)
T ss_dssp H---------HHHHHHHHHTTTEEEEECCEESHHHHHH---HTCEE-EEEESCHHHHHHHGGGCT
T ss_pred H---------HHHHHHHHHHcCCeEEeccccCchhhhc---cCCEE-EEEeCCHHHHHHHHHHHH
Confidence 1 12233333211111 12334444443 45433 356888888888888883
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.56 E-value=4.9e-07 Score=79.21 Aligned_cols=125 Identities=14% Similarity=0.207 Sum_probs=83.3
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.+++||+|||+|.+|+.+|..++.. ++ .++.++|.+++.++....+ ++... .++.
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~-~~----~el~L~D~~~~~~~g~a~D-----l~~~~----------~~~~----- 59 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALR-EL----ADVVLYDVVKGMPEGKALD-----LSHVT----------SVVD----- 59 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHH-TC----CEEEEECSSSSHHHHHHHH-----HHHHH----------HHTT-----
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CC----ceEEEEEeccccchhHHHH-----Hhhhc----------cccC-----
Confidence 3568999999999999999999988 73 4899999998765532110 11000 0000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC------------ch---------hHHHHHHH
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP------------ST---------ETKEVFEE 179 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp------------s~---------~~~~vl~~ 179 (461)
. ...+..+++.++++++||+|+++.. +. .+++++++
T Consensus 60 --~---------------------~~~~~~~~~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~ 116 (154)
T d1pzga1 60 --T---------------------NVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQN 116 (154)
T ss_dssp --C---------------------CCCEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHH
T ss_pred --C---------------------eeEEeccCchhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHH
Confidence 0 0135667888888999999999772 11 36666677
Q ss_pred HHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 180 ISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 180 i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
+.++.. +.+++.++|-++. +..++++..|.|..+
T Consensus 117 i~~~~p----~aiviivsNPvd~----------lt~~~~~~sg~p~~r 150 (154)
T d1pzga1 117 IKKYCP----KTFIIVVTNPLDC----------MVKVMCEASGVPTNM 150 (154)
T ss_dssp HHHHCT----TCEEEECCSSHHH----------HHHHHHHHHCCCGGG
T ss_pred HHhcCC----CcEEEEeCCcHHH----------HHHHHHHHhCcChhc
Confidence 766654 5788888887654 235677777765444
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.54 E-value=4.7e-07 Score=78.06 Aligned_cols=120 Identities=17% Similarity=0.218 Sum_probs=77.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.+|+++|..++.+ ++. .++.|+|++++.++... + ++ +.. ..+..
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~-~l~---~el~L~Di~~~~~~g~~---~-Dl-~~~----------~~~~~-------- 53 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMK-GFA---REMVLIDVDKKRAEGDA---L-DL-IHG----------TPFTR-------- 53 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHHHHH---H-HH-HHH----------GGGSC--------
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCC---CEEEEEecccccccchh---c-cc-ccc----------ccccc--------
Confidence 8999999999999999999988 742 48999999987655311 1 11 100 00000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHhhcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKER 187 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l~~~ 187 (461)
.....+.|. +++++||+||++.-. ..++++++.|.++.+
T Consensus 54 ----------------------~~~~~~~~~-~~~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p-- 108 (140)
T d1a5za1 54 ----------------------RANIYAGDY-ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-- 108 (140)
T ss_dssp ----------------------CCEEEECCG-GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT--
T ss_pred ----------------------cccccCCcH-HHhcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCC--
Confidence 012234454 568999999998722 135666666766654
Q ss_pred CCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
+.+++.++|-++. +..++++..|.|..+
T Consensus 109 --~aivivvtNPvd~----------~t~~~~k~sg~p~~r 136 (140)
T d1a5za1 109 --DSIVIVVTNPVDV----------LTYFFLKESGMDPRK 136 (140)
T ss_dssp --TCEEEECSSSHHH----------HHHHHHHHHTCCTTT
T ss_pred --CcEEEEeCCcHHH----------HHHHHHHHHCcCccc
Confidence 5788888876543 346677777755444
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.47 E-value=2.4e-08 Score=94.10 Aligned_cols=198 Identities=16% Similarity=0.116 Sum_probs=119.0
Q ss_pred HhhHHHHHhhcCCCCCC-ceEEEECccH--HHHHHHH------HHHHhcCCCCCCeeEEEEecCchhh-hhhhh------
Q 012547 27 ERLDELRRLMGKAEGDP-LRIVGVGAGA--WGSVFTA------MLQDSYGYLRDKVLIRIWRRPGRSV-DRATA------ 90 (461)
Q Consensus 27 ~~~~~~~~~~~~~~~~~-mkI~IIGaGa--mG~alA~------~La~~~G~~~~~~~V~l~~r~~~~~-~~~~~------ 90 (461)
.|..+.....|.++..+ .++.++|+|. ||..++. .|++. | +.|++.+-+.+.+ +..+.
T Consensus 23 ~~~~~~~~~~~~~~~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~-g-----~~v~~~d~d~~~v~~~~~~g~~~i~ 96 (242)
T d2b0ja2 23 MRACEVAKEVGKPEIALTHSSITYGAELLHLVPDVKEVIVSDPCFAEE-P-----GLVVIDEFDPKEVMEAHLSGNPESI 96 (242)
T ss_dssp HHHHHHHHHHTCGGGGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSS-S-----EEEECCCSCHHHHHHHHHTTCGGGT
T ss_pred HHHHhhhccCCCCccceeeeeeeeeecHHhhhhchhhhhccchhhhhc-C-----CeEEEEeCCHHHHHHHHhcCCchhh
Confidence 45666666677777554 4589999997 7777766 57888 8 9999999986543 33221
Q ss_pred -hhHHHHHhhhhhhHHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC
Q 012547 91 -EHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP 169 (461)
Q Consensus 91 -~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp 169 (461)
.+|.+.+++... +.+...+.. +. .++|. ..++++++|+.+++++||+||+|+|
T Consensus 97 ~p~l~~~v~~~~~------~~~~~~~~~---~~--~~~pE---------------e~Gv~v~~d~~Eav~~ADiII~~vP 150 (242)
T d2b0ja2 97 MPKIREVVKAKAK------ELPKPPKAC---IH--LVHPE---------------DVGLKVTSDDREAVEGADIVITWLP 150 (242)
T ss_dssp HHHHHHHHHHHHH------TSCCTTTEE---EE--SSCGG---------------GGTCEEESCHHHHHTTCSEEEECCT
T ss_pred cchHHHHHHHHHH------hccCCccch---hh--cCCHH---------------HCCCEEECCHHHHHhcCCeEEEeee
Confidence 223333333210 011111100 00 11111 1258899999999999999999998
Q ss_pred c-hhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEE
Q 012547 170 S-TETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANA 248 (461)
Q Consensus 170 s-~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~ 248 (461)
. +.+++++++|.+++++ +++++.++. +... .+..+.+.+... .+.+++++..+-....+. .++
T Consensus 151 ~~~~v~~Vi~~I~~~l~~---g~Iiid~ST-i~~~---------~~~~l~e~l~~k--gi~vi~~hp~a~pe~~g~-~li 214 (242)
T d2b0ja2 151 KGNKQPDIIKKFADAIPE---GAIVTHACT-IPTT---------KFAKIFKDLGRE--DLNITSYHPGCVPEMKGQ-VYI 214 (242)
T ss_dssp TCTTHHHHHHHHGGGSCT---TCEEEECSS-SCHH---------HHHHHHHHTTCT--TSEEEECBCSSCTTTCCC-EEE
T ss_pred cHHHHHHHHHHHHhhCCC---CcEEEecCC-CcHH---------HHHHHHHhcccC--CCEEECCCccCcCccccc-eEE
Confidence 5 6789999999999997 677766553 3322 123345555432 233444433222112332 222
Q ss_pred EE-eCChhHHHHHHHHhcCCCceEE
Q 012547 249 RI-CGAEKWRKPLAKFLRRPHFTVW 272 (461)
Q Consensus 249 ~~-~~~~~~~~~l~~ll~~~g~~v~ 272 (461)
.. ..+++..+.+.++|++.|-.++
T Consensus 215 ~~~~aseE~iekv~elles~Gk~~~ 239 (242)
T d2b0ja2 215 AEGYASEEAVNKLYEIGKIARGKAF 239 (242)
T ss_dssp EESSSCHHHHHHHHHHHHHHHSCEE
T ss_pred ecCCCCHHHHHHHHHHHHHHCCCeE
Confidence 22 4567889999999987775554
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.46 E-value=7.3e-07 Score=77.07 Aligned_cols=122 Identities=12% Similarity=0.079 Sum_probs=77.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.+|+++|..++.+ |.+ .++.++|++++.++. +.+ + ++.. .+.. +.
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~~~g---~al-D-l~~~-------------~~~~----~~ 54 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLN-LDV---DEIALVDIAEDLAVG---EAM-D-LAHA-------------AAGI----DK 54 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-SCC---SEEEEECSSHHHHHH---HHH-H-HHHH-------------HHTT----TC
T ss_pred CEEEEECcCHHHHHHHHHHHhc-CcC---ceEEEEecccchhhH---HHH-H-Hhhh-------------cccc----CC
Confidence 8999999999999999999988 743 479999999876542 110 1 1100 0100 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHhhcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKER 187 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l~~~ 187 (461)
...+..++|.+ ++++||+||++.-. ..++++.+++.++..
T Consensus 55 ---------------------~~~i~~~~d~~-~~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p-- 110 (142)
T d1ojua1 55 ---------------------YPKIVGGADYS-LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-- 110 (142)
T ss_dssp ---------------------CCEEEEESCGG-GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTST--
T ss_pred ---------------------CCccccCCCHH-HhccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCC--
Confidence 01356677874 68999999998731 134444555555432
Q ss_pred CCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
+.+++.++|-++. +..++++..|.|..+
T Consensus 111 --~aivivvtNPvD~----------~t~~~~k~sg~p~~r 138 (142)
T d1ojua1 111 --ESKILVVTNPMDV----------MTYIMWKESGKPRNE 138 (142)
T ss_dssp --TCEEEECSSSHHH----------HHHHHHHHSCCCTTS
T ss_pred --CcEEEEecCChHH----------HHHHHHHHHCCChhc
Confidence 5788888886543 235567777765444
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.43 E-value=9.3e-07 Score=76.13 Aligned_cols=122 Identities=20% Similarity=0.180 Sum_probs=78.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.+|+++|..|+.. |.. .++.|+|++++.++.... + ++. .... ++.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~-~l~---~el~L~Di~~~~~~~~~~----d-~~~--------------~~~~---~~~ 54 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEK-QLA---RELVLLDVVEGIPQGKAL----D-MYE--------------SGPV---GLF 54 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSSSSHHHHHHH----H-HHT--------------THHH---HTC
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCC---ceEEEeccccccchhhhh----h-hhc--------------ccch---hcc
Confidence 8999999999999999999988 743 589999999876553110 0 110 0000 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cch--------------hHHHHHHHHHHHhhcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST--------------ETKEVFEEISRYWKER 187 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps~--------------~~~~vl~~i~~~l~~~ 187 (461)
...+..++|. +++++||+|+++. |.. .++++++.|.++.+
T Consensus 55 ---------------------~~~i~~~~~~-~~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-- 110 (142)
T d1guza1 55 ---------------------DTKVTGSNDY-ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-- 110 (142)
T ss_dssp ---------------------CCEEEEESCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS--
T ss_pred ---------------------cceEEecCCH-HHhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCC--
Confidence 0134555665 4689999999986 221 35666677766653
Q ss_pred CCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
+.+++.++|-++. +..++++..|.|..+
T Consensus 111 --~aivivvtNPvd~----------~~~~~~~~sg~p~~r 138 (142)
T d1guza1 111 --NPIIIVVSNPLDI----------MTHVAWVRSGLPKER 138 (142)
T ss_dssp --SCEEEECCSSHHH----------HHHHHHHHHCSCGGG
T ss_pred --CeEEEEecCChHH----------HHHHHHHHhCCChHh
Confidence 5778878876543 335667776655444
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.38 E-value=1.3e-06 Score=75.92 Aligned_cols=121 Identities=18% Similarity=0.196 Sum_probs=76.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
+||+|||+|.+|+++|..|+.. |.. .++.+++++++.++.... + ++.. ....
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~~~g~~~----D-l~~a-------------~~~~------ 53 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQ-GVA---DDYVFIDANEAKVKADQI----D-FQDA-------------MANL------ 53 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHHHHHH----H-HHHH-------------GGGS------
T ss_pred CeEEEECcCHHHHHHHHHHHhc-CCC---ceEEEEecccchhhhHHH----h-hhcc-------------cccc------
Confidence 5999999999999999999988 632 489999999876543110 1 1110 0000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc--------------------hhHHHHHHHHHHH
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--------------------TETKEVFEEISRY 183 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps--------------------~~~~~vl~~i~~~ 183 (461)
.. .....+.|.+ ++++||+||++... ..++++.+.+.++
T Consensus 54 -~~-------------------~~~~~~~d~~-~l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~ 112 (146)
T d1hyha1 54 -EA-------------------HGNIVINDWA-ALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES 112 (146)
T ss_dssp -SS-------------------CCEEEESCGG-GGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT
T ss_pred -CC-------------------ccceeccCHH-HhccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 1223456655 58999999997531 1244555555554
Q ss_pred hhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 184 WKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 184 l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
.. +.+++.++|-++. +..++++..|.|..+
T Consensus 113 ~p----~aivivvtNPvD~----------~t~~~~k~sg~p~~r 142 (146)
T d1hyha1 113 GF----HGVLVVISNPVDV----------ITALFQHVTGFPAHK 142 (146)
T ss_dssp TC----CSEEEECSSSHHH----------HHHHHHHHHCCCGGG
T ss_pred CC----CeEEEEecCcHHH----------HHHHHHHHhCCCccc
Confidence 33 5788888887654 346677877765444
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.37 E-value=2.1e-06 Score=74.26 Aligned_cols=123 Identities=18% Similarity=0.287 Sum_probs=79.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+.||+|||+|.+|+++|..++.. |+. .++.|++++++.++... + ++ +.. ..+.+
T Consensus 1 p~Ki~IIGaG~VG~~~a~~l~~~-~l~---~ElvL~D~~~~~~~g~a---~-Dl-~~a----------~~~~~------- 54 (143)
T d1llda1 1 PTKLAVIGAGAVGSTLAFAAAQR-GIA---REIVLEDIAKERVEAEV---L-DM-QHG----------SSFYP------- 54 (143)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSSHHHHHHHH---H-HH-HHT----------GGGST-------
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CCC---cEEEEEEeccccchhHH---H-HH-Hhc----------cccCC-------
Confidence 46999999999999999999988 743 48999999987654210 0 11 110 00110
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHhhc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKE 186 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l~~ 186 (461)
. ..+..+++.+ ++++||+|+++.-. ..++++.++|.++..
T Consensus 55 ~----------------------~~i~~~~~~~-~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p- 110 (143)
T d1llda1 55 T----------------------VSIDGSDDPE-ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAP- 110 (143)
T ss_dssp T----------------------CEEEEESCGG-GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred C----------------------ceeecCCCHH-HhhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCC-
Confidence 0 1355567765 58999999998722 135555666666543
Q ss_pred cCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 187 ~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+.+++.++|-++. +..++++..|.|..++
T Consensus 111 ---~ai~ivvtNPvDv----------mt~~~~~~sg~p~~rV 139 (143)
T d1llda1 111 ---NAIYMLITNPVDI----------ATHVAQKLTGLPENQI 139 (143)
T ss_dssp ---TSEEEECCSSHHH----------HHHHHHHHHTCCTTSE
T ss_pred ---CeEEEEeCCchHH----------HHHHHHHHHCCChhhc
Confidence 4678888876654 3466778877665553
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.34 E-value=2.7e-06 Score=73.26 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=77.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
+||+|||+|.+|+++|..|+.+ +. .++.+++.+++.++... .+-.+ .... ++.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~-~l----~dl~l~D~~~~~~~~~~-------~Dl~~------------~~~~---~~~ 54 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAK-EL----GDIVLLDIVEGVPQGKA-------LDLYE------------ASPI---EGF 54 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECSSSSHHHHHH-------HHHHT------------THHH---HTC
T ss_pred CeEEEECCCHHHHHHHHHHHhC-Cc----ceEEEEeeccccchhHH-------HHhhc------------cccc---cCC
Confidence 5999999999999999999988 63 47999999887654311 11100 1100 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc--h--------------hHHHHHHHHHHHhhcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--T--------------ETKEVFEEISRYWKER 187 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps--~--------------~~~~vl~~i~~~l~~~ 187 (461)
...+..++|.++ ++++|+||++... . .+++++++|.++..
T Consensus 55 ---------------------~~~i~~~~d~~~-~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p-- 110 (142)
T d1uxja1 55 ---------------------DVRVTGTNNYAD-TANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-- 110 (142)
T ss_dssp ---------------------CCCEEEESCGGG-GTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT--
T ss_pred ---------------------CCEEEecCcHHH-hcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC--
Confidence 014666788875 7999999998832 1 24555566665533
Q ss_pred CCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
+.+++.++|-++. +..++++..|.|..+
T Consensus 111 --~aivivvtNPvDv----------~t~~~~~~sglp~~r 138 (142)
T d1uxja1 111 --NAVIIMVNNPLDA----------MTYLAAEVSGFPKER 138 (142)
T ss_dssp --TCEEEECSSSHHH----------HHHHHHHHHCCCGGG
T ss_pred --CceEEEeCCchHH----------HHHHHHHHHCcCccc
Confidence 5678888876654 234567776755444
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.33 E-value=1.3e-06 Score=77.66 Aligned_cols=83 Identities=23% Similarity=0.272 Sum_probs=53.0
Q ss_pred CceEEEECccHHHHHHHH--HHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~--~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.|||+|||+|++|++++. .++...+ +. ..++.++|+++++++.... .++. +.+..
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~-l~-~~eivL~Did~~~~~~~~~-----~~~~-------------~~~~~--- 58 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPG-LS-GSTVTLMDIDEERLDAILT-----IAKK-------------YVEEV--- 58 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGG-GT-TCEEEEECSCHHHHHHHHH-----HHHH-------------HHHHT---
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccc-cC-CCEEEEEeCCchHHHHHHH-----HHHH-------------HHHhc---
Confidence 589999999999987543 2443201 11 1599999999987764221 1111 11110
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS 170 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps 170 (461)
+. ...+..++|.++++.+||+||.++-.
T Consensus 59 -~~---------------------~~~i~~~td~~eaL~dad~Vv~~~~~ 86 (171)
T d1obba1 59 -GA---------------------DLKFEKTMNLDDVIIDADFVINTAMV 86 (171)
T ss_dssp -TC---------------------CCEEEEESCHHHHHTTCSEEEECCCT
T ss_pred -CC---------------------CeEEEEeCChhhcccCCCeEeeeccc
Confidence 00 01477889999999999999998743
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.27 E-value=3.3e-06 Score=72.83 Aligned_cols=120 Identities=18% Similarity=0.283 Sum_probs=72.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.||+|||+|.+|+++|..++.. ++. .++.|+|++++.++.... ++ +.. .+.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~-~l~---~el~L~D~~~~~~~g~a~----Dl-~~~-------------~~~------- 52 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALR-QTA---NELVLIDVFKEKAIGEAM----DI-NHG-------------LPF------- 52 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-TCS---SEEEEECCC---CCHHHH----HH-TTS-------------CCC-------
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeccCCccceeee----ee-ccC-------------ccc-------
Confidence 5899999999999999999988 742 489999999876543110 11 100 010
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEE-ecCHHHHhcCCCEEEEcC--Cch--------------hHHHHHHHHHHHhhc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKV-VTNLQEAVWDADIVINGL--PST--------------ETKEVFEEISRYWKE 186 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~dl~~av~~aDiIIiaV--ps~--------------~~~~vl~~i~~~l~~ 186 (461)
. ..... +.+. +++++||+|+++. |.. .++++++++.++..
T Consensus 53 --~-------------------~~~~~~~~~~-~~~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p- 109 (142)
T d1y6ja1 53 --M-------------------GQMSLYAGDY-SDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYN- 109 (142)
T ss_dssp --T-------------------TCEEEC--CG-GGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred --C-------------------CCeeEeeCcH-HHhCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCC-
Confidence 0 12222 3444 4589999999984 221 34555566666543
Q ss_pred cCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 187 ~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+.+++.++|-++. +..++++..|.|..++
T Consensus 110 ---~ai~ivvtNPvdv----------~t~~~~k~sg~p~~rV 138 (142)
T d1y6ja1 110 ---HGVILVVSNPVDI----------ITYMIQKWSGLPVGKV 138 (142)
T ss_dssp ---SCEEEECSSSHHH----------HHHHHHHHHTCCTTTE
T ss_pred ---CceEEEecChHHH----------HHHHHHHHHCCCccce
Confidence 4678878876543 3466788877665553
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.21 E-value=9.5e-06 Score=70.50 Aligned_cols=123 Identities=19% Similarity=0.283 Sum_probs=77.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.+|+++|..++.. +. .++.|+|++++.++....+ ++... .+..
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~-~l----~el~L~Di~~~~~~g~a~D-----l~~~~-----------~~~~------ 55 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQK-NL----GDVVLFDIVKNMPHGKALD-----TSHTN-----------VMAY------ 55 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TC----CEEEEECSSSSHHHHHHHH-----HHTHH-----------HHHT------
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CC----CeEEEEeccCCcceeeecc-----hhhhc-----------cccC------
Confidence 57999999999999999988877 63 4799999988765531110 11100 0000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc--h-------------------hHHHHHHHHH
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--T-------------------ETKEVFEEIS 181 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps--~-------------------~~~~vl~~i~ 181 (461)
. . ..+..+.+. +++++||+|+++.-. . .++++.++++
T Consensus 56 ~-~--------------------~~v~~~~~~-~~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~ 113 (150)
T d1t2da1 56 S-N--------------------CKVSGSNTY-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIK 113 (150)
T ss_dssp C-C--------------------CCEEEECCG-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHH
T ss_pred C-C--------------------cEEEecccc-cccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHH
Confidence 0 0 124444455 457999999998731 0 3556666666
Q ss_pred HHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 182 RYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 182 ~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
++.. +.+++.++|-++. +..++++..|.|..++
T Consensus 114 ~~~p----~aivivvtNPvD~----------~t~~~~~~sg~p~~rV 146 (150)
T d1t2da1 114 KNCP----NAFIIVVTNPVDV----------MVQLLHQHSGVPKNKI 146 (150)
T ss_dssp HHCT----TSEEEECSSSHHH----------HHHHHHHHHCCCGGGE
T ss_pred hcCC----CeEEEEecCchHH----------HHHHHHHHHCCCchhe
Confidence 6543 5788888877654 3466777777655553
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.21 E-value=7.2e-06 Score=72.09 Aligned_cols=122 Identities=14% Similarity=0.167 Sum_probs=77.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
..||+|||+|.+|+++|..|+.. |+. .++.++|++++.++... .++ +... .+..
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~-~l~---~ElvLiD~~~~~a~g~a----lDl-~h~~----------~~~~------- 73 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGK-SLA---DELALVDVLEDKLKGEM----MDL-QHGS----------LFLQ------- 73 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSCHHHHHHHH----HHH-HHTG----------GGCC-------
T ss_pred CCeEEEECCCHHHHHHHHHHHhc-CCC---cEEEEEEeccchhHHHH----HHH-hccc----------cccC-------
Confidence 36999999999999999999998 743 47999999987654311 011 1100 0000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHhhc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKE 186 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l~~ 186 (461)
. ..+..+.|.+ .+++||+|+++.-. ..++++.++|.++..
T Consensus 74 ~----------------------~~~~~~~d~~-~~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p- 129 (160)
T d1i0za1 74 T----------------------PKIVADKDYS-VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSP- 129 (160)
T ss_dssp C----------------------SEEEECSSGG-GGTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-
T ss_pred C----------------------CeEEeccchh-hcccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 0 1233445654 58999999997622 135556666666533
Q ss_pred cCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 187 ~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
+.+++.++|-++. +..++++..|.|..+
T Consensus 130 ---~aiiivvtNPvDv----------~t~~~~k~sglp~~r 157 (160)
T d1i0za1 130 ---DCIIIVVSNPVDI----------LTYVTWKLSGLPKHR 157 (160)
T ss_dssp ---TCEEEECSSSHHH----------HHHHHHHHHCCCGGG
T ss_pred ---CcEEEEeCCchHH----------HHHHHHHHHCcCccc
Confidence 5788888877654 335677777765444
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=98.07 E-value=8.8e-06 Score=71.98 Aligned_cols=122 Identities=13% Similarity=0.169 Sum_probs=75.8
Q ss_pred CCceEEEECccHHHHHHHH--HHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~--~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+..||+|||+|+.|++.+. .+... -.+. ..++.|+|.++++++.... .++. +....
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~-~~l~-~~eivL~Did~~~~~~~~~-----~~~~-------------~~~~~-- 59 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHL-EEFP-IRKLKLYDNDKERQDRIAG-----ACDV-------------FIREK-- 59 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTT-TTSC-EEEEEEECSCHHHHHHHHH-----HHHH-------------HHHHH--
T ss_pred CCceEEEECCChhhhHHHHHHHHhhh-hhcC-CCEEEEEcCChhHHHHHHH-----HHHH-------------HHHHh--
Confidence 4579999999999876443 33322 1011 1489999999987663111 1111 01100
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-----------------------------
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------------------- 170 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------------------- 170 (461)
+ . ...+..++|..+++++||+||++.-.
T Consensus 60 --~---~------------------~~~~~~~~d~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~ 116 (167)
T d1u8xx1 60 --A---P------------------DIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGI 116 (167)
T ss_dssp --C---T------------------TSEEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHH
T ss_pred --C---C------------------CcceEecCChhhccCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcch
Confidence 0 0 01467789999999999999999842
Q ss_pred -------hhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhC
Q 012547 171 -------TETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG 222 (461)
Q Consensus 171 -------~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg 222 (461)
..+.++++.+.++.+ ++.++..+|-+.. ++..+++.++
T Consensus 117 ~~~~r~i~ii~~i~~~i~~~~P----~A~li~~TNPvdv----------~t~~~~k~~P 161 (167)
T d1u8xx1 117 AYGMRSIGGVLEILDYMEKYSP----DAWMLNYSNPAAI----------VAEATRRLRP 161 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT----TCEEEECCSCHHH----------HHHHHHHHST
T ss_pred heehhhHHHHHHHHHHHHhhCC----CeEEEEeCCHHHH----------HHHHHHHHCC
Confidence 234566666666654 5788888877654 3466777664
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.05 E-value=6.9e-06 Score=70.92 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=67.9
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
||+|||| |.+|+++|..|+.. |+. .++.+++.++.+.+.. + ++ + -..+.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~-~~~---~elvLiDi~~~~~~a~------D-l~--~--------~~~~~~-------- 52 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNS-PLV---SRLTLYDIAHTPGVAA------D-LS--H--------IETRAT-------- 52 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTC-TTC---SEEEEEESSSHHHHHH------H-HT--T--------SSSSCE--------
T ss_pred eEEEECCCChHHHHHHHHHHhC-Ccc---ceEEEEeccccchhhH------H-Hh--h--------hhhhcC--------
Confidence 8999996 99999999999988 753 4799999876543320 0 11 0 000000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC--c--------------hhHHHHHHHHHHHhhcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--S--------------TETKEVFEEISRYWKER 187 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp--s--------------~~~~~vl~~i~~~l~~~ 187 (461)
. .....+++..+++++||+||++-- . ..++++++.+.++..
T Consensus 53 --~-------------------~~~~~~~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p-- 109 (144)
T d1mlda1 53 --V-------------------KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-- 109 (144)
T ss_dssp --E-------------------EEEESGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT--
T ss_pred --C-------------------CeEEcCCChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCC--
Confidence 0 012234566778899999999753 2 146677777777633
Q ss_pred CCCCEEEEEeecCcc
Q 012547 188 ITVPVIISLAKGVEA 202 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~ 202 (461)
+.+++.++|-++.
T Consensus 110 --~~iiivvtNPvD~ 122 (144)
T d1mlda1 110 --DAMICIISNPVNS 122 (144)
T ss_dssp --TSEEEECSSCHHH
T ss_pred --CeEEEEecCchhh
Confidence 5788888887763
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.04 E-value=1.1e-05 Score=70.71 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=34.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
...||+|||+|.+|+++|..|+.. |+. .++.|+|++++.++
T Consensus 18 ~~~KI~IIGaG~VG~~~A~~l~~~-~l~---~elvL~D~~~~~a~ 58 (159)
T d2ldxa1 18 SRCKITVVGVGDVGMACAISILLK-GLA---DELALVDADTDKLR 58 (159)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTT-TSC---SEEEEECSCHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCchhhh
Confidence 346999999999999999999988 742 48999999987654
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.02 E-value=3.7e-06 Score=72.94 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=35.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+||.|||||.||..+|..|+++ | ++|++|+|+.+.++.
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~-g-----~~V~v~dr~~~~a~~ 40 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDS-G-----IKVTVACRTLESAKK 40 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECChHHHHH
Confidence 5899999999999999999999 8 999999999987765
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.00 E-value=2.9e-05 Score=66.91 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=31.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|||+|||| |.+|.++|..|+.. |.. .++.+++++++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~-~l~---~el~L~D~~~~ 37 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKE-PFM---KDLVLIGREHS 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC-TTC---CEEEEEECGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhC-Ccc---cccccccchhh
Confidence 89999996 99999999999987 643 48999999864
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.94 E-value=3.4e-05 Score=66.92 Aligned_cols=130 Identities=15% Similarity=0.196 Sum_probs=75.3
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCC--CeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~--~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
.+|||+|||| |.+|+++|..|+.. +.+.. ..+..+++.++..... +++. +.... ..+ +.
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~-~~~~~~~~~~L~l~d~~~~~~~~---~~l~--~~~~~---------~~~-~~-- 63 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNG-SVFGKDQPIILVLLDITPMMGVL---DGVL--MELQD---------CAL-PL-- 63 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTT-TTTCTTCCEEEEEECCGGGHHHH---HHHH--HHHHH---------TCC-TT--
T ss_pred CceEEEEECCCCHHHHHHHHHHHHH-HhcCCCCccEEEEecCccchhhh---hhhh--hhhcc---------ccc-cc--
Confidence 5789999996 99999999999876 44321 1356666665432211 1111 00000 000 00
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHH
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISR 182 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~ 182 (461)
...+..+++..++.+++|+||++--. ..++++.+.|.+
T Consensus 64 --------------------------~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k 117 (154)
T d5mdha1 64 --------------------------LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDK 117 (154)
T ss_dssp --------------------------EEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred --------------------------ccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHh
Confidence 01356678888899999999997722 135556666666
Q ss_pred HhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHh-CCCCCcE
Q 012547 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRAT-GVPIENI 228 (461)
Q Consensus 183 ~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~l-g~~~~~v 228 (461)
+.+. ..+++.++|-++. +..+++++. |.|..++
T Consensus 118 ~a~~---~~~iivvsNPvD~----------mt~v~~k~s~g~P~~~v 151 (154)
T d5mdha1 118 YAKK---SVKVIVVGNPANT----------NCLTASKSAPSIPKENF 151 (154)
T ss_dssp HSCT---TCEEEECSSSHHH----------HHHHHHHTCTTSCGGGE
T ss_pred hCCC---ceEEEEecCcHHH----------HHHHHHHHcCCCCHHHE
Confidence 5443 3445666765443 234556666 6555554
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.93 E-value=3.4e-05 Score=68.02 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=44.5
Q ss_pred CeEEecCHHHHhcCCCEEEEcCCch------------------------------------hHHHHHHHHHHHhhccCCC
Q 012547 147 PLKVVTNLQEAVWDADIVINGLPST------------------------------------ETKEVFEEISRYWKERITV 190 (461)
Q Consensus 147 ~i~~t~dl~~av~~aDiIIiaVps~------------------------------------~~~~vl~~i~~~l~~~~~~ 190 (461)
.+..++|..+++++||+||++.... .++++++++..+.+ +
T Consensus 64 ~~~~~td~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~p----d 139 (169)
T d1s6ya1 64 EIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCP----D 139 (169)
T ss_dssp EEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCT----T
T ss_pred eeeecCCchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCC----C
Confidence 4677899999999999999998532 14666677777644 5
Q ss_pred CEEEEEeecCccccccccccCCHHHHHHhHhC
Q 012547 191 PVIISLAKGVEAELEAVPRIITPTQMINRATG 222 (461)
Q Consensus 191 ~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg 222 (461)
+.++.++|-++. +...+++.++
T Consensus 140 a~~i~vtNPvdv----------~t~~~~k~~p 161 (169)
T d1s6ya1 140 AWLINFTNPAGM----------VTEAVLRYTK 161 (169)
T ss_dssp CEEEECSSSHHH----------HHHHHHHHCC
T ss_pred eEEEEeCChHHH----------HHHHHHHHCC
Confidence 788888887654 2356677664
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.90 E-value=1.7e-05 Score=66.61 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=35.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
|||.|+|+|.+|..+|..|.+. | ++|.+++.+++.++.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~-g-----~~v~vid~d~~~~~~ 38 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK-G-----HDIVLIDIDKDICKK 38 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CCcceecCChhhhhh
Confidence 8999999999999999999998 8 999999999987765
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.89 E-value=2.4e-05 Score=68.55 Aligned_cols=79 Identities=16% Similarity=0.113 Sum_probs=50.9
Q ss_pred ceEEEECccHHHHHHHHH-HHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSVFTAM-LQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~-La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|||+|+.|++++.. ++.....+ +..++.|+|.++++++... +..+. ....
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~-~~~el~L~Did~~k~~~~~-----d~~~~--------------~~~~----- 55 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDV-RIDEVIFYDIDEEKQKIVV-----DFVKR--------------LVKD----- 55 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTS-CCCEEEEECSCHHHHHHHH-----HHHHH--------------HHTT-----
T ss_pred CEEEEECCCHHHHHHHHHHHHhccccc-CccEEEEEecCcHHHHHHH-----HHHHh--------------hhcc-----
Confidence 899999999999888754 33331100 0158999999987655311 11100 0000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP 169 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp 169 (461)
. .++.++++..+++++||+||++.-
T Consensus 56 --~--------------------~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 56 --R--------------------FKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp --S--------------------SEEEECSSHHHHHTTCSEEEECCC
T ss_pred --C--------------------ceEEEecCcccccCCCCEEEEecc
Confidence 0 146678889999999999999874
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.87 E-value=1.6e-05 Score=69.58 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=40.7
Q ss_pred HHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 30 ~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+..++.+|- -...||.|||+|.||..++..|... |. .++++|+|+.++++.
T Consensus 13 ~la~~~~~~--l~~~~ilviGaG~~g~~v~~~L~~~-g~----~~i~v~nRt~~ka~~ 63 (159)
T d1gpja2 13 ELAERELGS--LHDKTVLVVGAGEMGKTVAKSLVDR-GV----RAVLVANRTYERAVE 63 (159)
T ss_dssp HHHHHHHSC--CTTCEEEEESCCHHHHHHHHHHHHH-CC----SEEEEECSSHHHHHH
T ss_pred HHHHHHhCC--cccCeEEEECCCHHHHHHHHHHHhc-CC----cEEEEEcCcHHHHHH
Confidence 345666653 3457899999999999999999998 72 479999999877654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.79 E-value=3e-05 Score=64.82 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=34.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+++.|+|+|.+|..+|..|.+. | ++|++++.+++.++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~-g-----~~vvvid~d~~~~~~ 38 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM-G-----HEVLAVDINEEKVNA 38 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CeEEEecCcHHHHHH
Confidence 4689999999999999999999 8 999999999987765
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=7.8e-05 Score=64.62 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=62.4
Q ss_pred CceEEEECccHHHHH-HHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~a-lA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+|||+|||+|.||.- ....+... . +.++ .+++++++.++.+.+ . |
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~-~----~~~i~~v~d~~~~~~~~~~~--------~-------------~------- 47 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAA-S----DWTLQGAWSPTRAKALPICE--------S-------------W------- 47 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSC-S----SEEEEEEECSSCTTHHHHHH--------H-------------H-------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhC-C----CcEEEEEEechhHhhhhhhh--------c-------------c-------
Confidence 479999999999975 45555543 2 1454 478888876543110 0 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
++...++.++.+.+.|+|++|+|+....+++...... +.. |.+-|-+
T Consensus 48 --------------------------~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~~al~~------gk~-V~~EKPl 94 (164)
T d1tlta1 48 --------------------------RIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNA------GVH-VCVDKPL 94 (164)
T ss_dssp --------------------------TCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHHHHHT------TCE-EEEESSS
T ss_pred --------------------------cccccccchhhhhhcccccccccchhccccccccccc------cce-eeccccc
Confidence 1223456677778999999999999888877776542 333 4477776
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
...
T Consensus 95 a~~ 97 (164)
T d1tlta1 95 AEN 97 (164)
T ss_dssp CSS
T ss_pred cCC
Confidence 654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.72 E-value=0.00018 Score=62.16 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.1
Q ss_pred CCCceEEEECc-cHHHHHHHHHHHHhcCCC
Q 012547 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYL 69 (461)
Q Consensus 41 ~~~mkI~IIGa-GamG~alA~~La~~~G~~ 69 (461)
.++|||+|||| |.+|+++|..|+.. +.+
T Consensus 2 ~~p~KV~IiGA~G~VG~~~a~~l~~~-~l~ 30 (154)
T d1y7ta1 2 KAPVRVAVTGAAGQIGYSLLFRIAAG-EML 30 (154)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTT-TTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhc-ccc
Confidence 36789999997 99999999999987 543
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=0.0002 Score=59.46 Aligned_cols=114 Identities=11% Similarity=-0.022 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHHH-HHHHhhc---cC-ccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhccccchhHHH
Q 012547 276 DLVTHEVMGGLKNVY-AIGAALT---NE-SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYG 350 (461)
Q Consensus 276 Di~gve~~galKNv~-Ai~~Gi~---~g-~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~G 350 (461)
||.+..|.+.+.|+. .-.+.+. .| ..... .++.+.+.|+..++++.|....... +-+.+.. ..
T Consensus 1 dI~~~~W~Kl~~N~~~n~l~al~~~~~g~l~~~~-~~~~~l~~E~~~va~a~g~~~~~~~---~~~~~~~--------~~ 68 (124)
T d1ks9a1 1 NIRAELWRKLAVNCVINPLTAIWNCPNGELRHHP-QEIMQICEEVAAVIEREGHHTSAED---LRDYVMQ--------VI 68 (124)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCH-HHHHHHHHHHHHHHHHHTCCCCHHH---HHHHHHH--------HH
T ss_pred CHHHHHHHHHHHHHhHhHHHHHhCCCchHHHhCH-HHHHHHHHHHHHHHHHcCCCCcHHH---HHHHHHH--------HH
Confidence 788899999888873 2223333 22 11122 4677899999999999998653211 0111100 00
Q ss_pred HHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 351 QELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 351 ~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
...+..++ +..+|..+++++ +|.+++ .++++++++|+ + +|+++++|.+++.
T Consensus 69 ~~~~~~~s-SM~qD~~~gr~tEid~i~G--~vv~~a~~~gi--------------~-tP~~~~l~~lik~ 120 (124)
T d1ks9a1 69 DATAENIS-SMLQDIRALRHTEIDYING--FLLRRARAHGI--------------A-VPENTRLFEMVKR 120 (124)
T ss_dssp HHTTTCCC-HHHHHHHTTCCCSGGGTHH--HHHHHHHHHTC--------------C-CHHHHHHHHHHHH
T ss_pred hccCCCCC-hHHHHHHcCCcchHHHHHH--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 11111111 222333344455 777777 99999999995 6 8999999999874
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.65 E-value=2.3e-05 Score=70.06 Aligned_cols=90 Identities=19% Similarity=0.304 Sum_probs=64.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.+|..+|..+..- | .+|..|+|++...
T Consensus 42 gk~vgIiG~G~IG~~va~~l~~~-g-----~~v~~~d~~~~~~------------------------------------- 78 (181)
T d1qp8a1 42 GEKVAVLGLGEIGTRVGKILAAL-G-----AQVRGFSRTPKEG------------------------------------- 78 (181)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHT-T-----CEEEEECSSCCCS-------------------------------------
T ss_pred CceEEEeccccccccceeeeecc-c-----ccccccccccccc-------------------------------------
Confidence 47899999999999999999876 7 8999998875210
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
......++++.+++||+|++++|-. ..+.++ ++....+++ ++++|.+..|=
T Consensus 79 ------------------------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~---~ailIN~~RG~ 131 (181)
T d1qp8a1 79 ------------------------PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAE---DAVFVNVGRAE 131 (181)
T ss_dssp ------------------------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCT---TCEEEECSCGG
T ss_pred ------------------------ceeeeechhhhhhccchhhcccccccccccccccceeeeccc---cceEEeccccc
Confidence 0112346788899999999999953 344433 233344565 78999988774
Q ss_pred cc
Q 012547 201 EA 202 (461)
Q Consensus 201 ~~ 202 (461)
..
T Consensus 132 iv 133 (181)
T d1qp8a1 132 VL 133 (181)
T ss_dssp GB
T ss_pred cc
Confidence 33
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.62 E-value=0.00029 Score=60.28 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=29.3
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||+||| +|.+|+++|..++.+ |+. .++.+++.+.
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~-~l~---~el~L~Di~~ 36 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALR-DIA---DEVVFVDIPD 36 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCC---SEEEEECCGG
T ss_pred CeEEEECCCCcHHHHHHHHHHhC-CCC---CEEEEEecCC
Confidence 3899999 699999999999988 743 4799999753
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.59 E-value=0.00014 Score=64.11 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=65.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++||+|||+|.||...+..+... . +.+|. +++++++.++...+ .. ..+
T Consensus 1 kiki~iIG~G~~g~~~~~~l~~~-~----~~~i~ai~d~~~~~~~~~~~--------~~------------~~~------ 49 (184)
T d1ydwa1 1 QIRIGVMGCADIARKVSRAIHLA-P----NATISGVASRSLEKAKAFAT--------AN------------NYP------ 49 (184)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHC-T----TEEEEEEECSSHHHHHHHHH--------HT------------TCC------
T ss_pred CeEEEEEcCCHHHHHHHHHHHhC-C----CCEEEEEEeCCccccccchh--------cc------------ccc------
Confidence 47999999999999999888765 2 25655 67888765543110 00 011
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh--cCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV--WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av--~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
...++.+|+++.+ .+.|+|++|+|+...-+.+..... . +.. |.+-|-
T Consensus 50 ------------------------~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~~~~~~l~---~---g~~-v~~EKP 98 (184)
T d1ydwa1 50 ------------------------ESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAE---K---GKH-ILLEKP 98 (184)
T ss_dssp ------------------------TTCEEESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHT---T---TCE-EEECSS
T ss_pred ------------------------cceeecCcHHHhhhccccceeeecccchhhcchhhhhhh---c---cce-eecccc
Confidence 1345678888876 457999999999988777666543 2 333 446776
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
+...
T Consensus 99 ~~~~ 102 (184)
T d1ydwa1 99 VAMN 102 (184)
T ss_dssp CSSS
T ss_pred cccC
Confidence 6543
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.57 E-value=9.4e-05 Score=64.79 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=58.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++||+|||+|.||...+..+... . +.++. +++++.+....
T Consensus 3 kirvgiiG~G~ig~~~~~~l~~~-~----~~elvav~~~~~~~~~~---------------------------------- 43 (170)
T d1f06a1 3 NIRVAIVGYGNLGRSVEKLIAKQ-P----DMDLVGIFSRRATLDTK---------------------------------- 43 (170)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTC-S----SEEEEEEEESSSCCSSS----------------------------------
T ss_pred cceEEEECChHHHHHHHHHHHhC-C----CcEEEEEEecccccccc----------------------------------
Confidence 47999999999999999888765 2 14443 56666532110
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.......+.++...+.|+|++|+|+....+++.+. +.. +..+|.+.+..
T Consensus 44 ------------------------~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~~a---L~a---G~~vv~~~~~~ 92 (170)
T d1f06a1 44 ------------------------TPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPK---FAQ---FACTVDTYDNH 92 (170)
T ss_dssp ------------------------SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHHH---HTT---TSEEECCCCCG
T ss_pred ------------------------cccccchhhhhhccccceEEEeCCCcccHHHHHHH---HHC---CCcEEEecCcc
Confidence 02334455556677899999999999877766554 344 45556555443
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.00024 Score=60.96 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=28.3
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|||+||| +|.+|+++|..|+...+.. .++.+++..+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~---~el~L~D~~~ 37 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSG---SELSLYDIAP 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTT---CEEEEECSST
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCC---cEEEEecccc
Confidence 8999999 5999999999886431211 6899999864
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=8.8e-05 Score=66.29 Aligned_cols=96 Identities=16% Similarity=0.231 Sum_probs=66.9
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+-..++|+|||.|.+|..+|..+..- | .+|..|++...... .
T Consensus 41 ~l~~~~vgiiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~----------------------------~---- 82 (188)
T d1sc6a1 41 EARGKKLGIIGYGHIGTQLGILAESL-G-----MYVYFYDIENKLPL----------------------------G---- 82 (188)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCCC----------------------------T----
T ss_pred cccceEEEEeecccchhhhhhhcccc-c-----ceEeeccccccchh----------------------------h----
Confidence 34558999999999999999988765 6 89999987642100 0
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~t 197 (461)
......++++.++.||+|++++|- ...+.++ ++....+++ ++++|.++
T Consensus 83 ---------------------------~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~---~a~lIN~a 132 (188)
T d1sc6a1 83 ---------------------------NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKP---GSLLINAS 132 (188)
T ss_dssp ---------------------------TCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCT---TEEEEECS
T ss_pred ---------------------------hhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCC---CCEEEEcC
Confidence 112235788889999999999984 3444433 334445565 78899888
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
-|=..+
T Consensus 133 RG~lvd 138 (188)
T d1sc6a1 133 RGTVVD 138 (188)
T ss_dssp CSSSBC
T ss_pred cHHhhh
Confidence 774443
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.46 E-value=0.00021 Score=61.89 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=60.2
Q ss_pred ceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~a-lA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|||+|.||.. ....+.+. + +.++.+++++++.++.+.++ | .
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-~----~~~~~~~d~~~~~~~~~~~~---------------------~-~------- 47 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-P----DIELVLCTRNPKVLGTLATR---------------------Y-R------- 47 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-T----TEEEEEECSCHHHHHHHHHH---------------------T-T-------
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-C----CcEEEEEECCHHHHHHHHHh---------------------c-c-------
Confidence 79999999999975 45556544 3 26778888887655432110 0 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc-CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~-~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.....+|.++.++ +.|+|++|+|+....+++...... +.. |.+-|-+.
T Consensus 48 ------------------------~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~~al~~------gk~-V~~EKP~~ 96 (167)
T d1xeaa1 48 ------------------------VSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAFFLHL------GIP-TFVDKPLA 96 (167)
T ss_dssp ------------------------CCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHHHHHHT------TCC-EEEESCSC
T ss_pred ------------------------cccccccHHHhcccccceeccccccccccccccccccc------ccc-cccCCCCc
Confidence 0012244444443 579999999999888888776542 222 45777665
Q ss_pred cc
Q 012547 202 AE 203 (461)
Q Consensus 202 ~~ 203 (461)
..
T Consensus 97 ~~ 98 (167)
T d1xeaa1 97 AS 98 (167)
T ss_dssp SS
T ss_pred CC
Confidence 54
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.40 E-value=0.00018 Score=64.16 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=69.1
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+-..++|+|||.|.+|..+|..+..- | .+|..|++....... ...
T Consensus 41 ~l~~~~vgiiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~~--------------------------~~~--- 85 (188)
T d2naca1 41 DLEAMHVGTVAAGRIGLAVLRRLAPF-D-----VHLHYTDRHRLPESV--------------------------EKE--- 85 (188)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHGGG-T-----CEEEEECSSCCCHHH--------------------------HHH---
T ss_pred eccccceeeccccccchhhhhhhhcc-C-----ceEEEEeeccccccc--------------------------ccc---
Confidence 34457999999999999999999765 6 789999987532110 000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~t 197 (461)
..+....++++.+++||+|++++|.. ..+.++ ++....+++ ++++|.++
T Consensus 86 --------------------------~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~---ga~lIN~a 136 (188)
T d2naca1 86 --------------------------LNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR---GAYIVNTA 136 (188)
T ss_dssp --------------------------HTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCT---TEEEEECS
T ss_pred --------------------------ccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCC---CCEEEecC
Confidence 02344577888999999999999953 444444 334445565 78899888
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
-|=..+
T Consensus 137 RG~ivd 142 (188)
T d2naca1 137 RGKLCD 142 (188)
T ss_dssp CGGGBC
T ss_pred chhhhh
Confidence 774443
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.36 E-value=0.00068 Score=59.49 Aligned_cols=97 Identities=16% Similarity=0.094 Sum_probs=62.2
Q ss_pred CceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++||+|||+|.||.. ....+.+. + +..+|. ++++++++++.+.+ . + .
T Consensus 3 kirigiIG~G~~g~~~h~~~l~~~-~---~~~~i~~v~d~~~~~~~~~~~---------~------------~-~----- 51 (181)
T d1zh8a1 3 KIRLGIVGCGIAARELHLPALKNL-S---HLFEITAVTSRTRSHAEEFAK---------M------------V-G----- 51 (181)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTT-T---TTEEEEEEECSSHHHHHHHHH---------H------------H-S-----
T ss_pred CcEEEEEcCCHHHHHHHHHHHHhC-C---CCeEEEEEEeccHhhhhhhhc---------c------------c-c-----
Confidence 479999999999986 45556543 2 013544 78888765543110 0 0 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.....+|+++.++ +.|+|++|+|+....+++..+... +.. |.+-|
T Consensus 52 --------------------------~~~~~~~~~ell~~~~id~v~I~tp~~~h~~~~~~al~~------gk~-V~~EK 98 (181)
T d1zh8a1 52 --------------------------NPAVFDSYEELLESGLVDAVDLTLPVELNLPFIEKALRK------GVH-VICEK 98 (181)
T ss_dssp --------------------------SCEEESCHHHHHHSSCCSEEEECCCGGGHHHHHHHHHHT------TCE-EEEES
T ss_pred --------------------------ccceeeeeeccccccccceeecccccccccccccccccc------chh-hhcCC
Confidence 1234578888765 479999999999888888776542 333 44677
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
-+...
T Consensus 99 Pl~~~ 103 (181)
T d1zh8a1 99 PISTD 103 (181)
T ss_dssp SSSSS
T ss_pred CCcCC
Confidence 66554
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.35 E-value=0.00033 Score=63.90 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=64.4
Q ss_pred CCCCCceEEEECccHHHH-HHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccch
Q 012547 39 AEGDPLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~-alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~ 116 (461)
++.++-||+|||+|.||. .+...+... . +.+|. +++++++.++...++ . .++.
T Consensus 29 ~~~~~iriaiIG~G~~~~~~~~~~~~~~-~----~~~ivav~d~~~~~a~~~~~~--------~------------~i~~ 83 (221)
T d1h6da1 29 PEDRRFGYAIVGLGKYALNQILPGFAGC-Q----HSRIEALVSGNAEKAKIVAAE--------Y------------GVDP 83 (221)
T ss_dssp CCCCCEEEEEECCSHHHHHTHHHHTTTC-S----SEEEEEEECSCHHHHHHHHHH--------T------------TCCG
T ss_pred CCCCCEEEEEEcCcHHHHHHHHHHHHhC-C----CceEEEEecCCHHHHHHHHHh--------h------------cccc
Confidence 445567999999999997 455555443 1 25555 889988766542111 0 0110
Q ss_pred hhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEE
Q 012547 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (461)
Q Consensus 117 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iII 194 (461)
..+...+|.++.+. +.|+|++|+|.+...++..+.... +.. |
T Consensus 84 -----------------------------~~~~~~~d~~ell~~~~iD~V~I~tp~~~H~~~~~~al~~------gk~-v 127 (221)
T d1h6da1 84 -----------------------------RKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKA------GKH-V 127 (221)
T ss_dssp -----------------------------GGEECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHHHHHT------TCE-E
T ss_pred -----------------------------ccccccCchhhhcccccceeeeeccchhhhhhHHHHhhhc------chh-h
Confidence 02344566777664 579999999999888877665542 333 4
Q ss_pred EEeecCccc
Q 012547 195 SLAKGVEAE 203 (461)
Q Consensus 195 s~tkGi~~~ 203 (461)
.+-|-+...
T Consensus 128 ~~EKPla~~ 136 (221)
T d1h6da1 128 MCEKPMATS 136 (221)
T ss_dssp EECSSCCSS
T ss_pred hcCCCccCC
Confidence 477766543
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.34 E-value=0.00017 Score=64.81 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=67.3
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
-.-++|+|||.|.+|..+|..+..- | .+|..|++....-.. ..
T Consensus 47 L~gktvgIiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~~---------------------------~~---- 89 (193)
T d1mx3a1 47 IRGETLGIIGLGRVGQAVALRAKAF-G-----FNVLFYDPYLSDGVE---------------------------RA---- 89 (193)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCTTHH---------------------------HH----
T ss_pred eeCceEEEeccccccccceeeeecc-c-----cceeeccCcccccch---------------------------hh----
Confidence 3447999999999999999999755 6 899999886532100 00
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tk 198 (461)
.++....++++.++.||+|++++|-. ..+.++ ++....+++ ++++|.++-
T Consensus 90 -------------------------~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~---~a~lIN~sR 141 (193)
T d1mx3a1 90 -------------------------LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQ---GAFLVNTAR 141 (193)
T ss_dssp -------------------------HTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCT---TEEEEECSC
T ss_pred -------------------------hccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCC---CCeEEecCC
Confidence 02344568889999999999999943 333333 223334555 688898887
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
|=..+
T Consensus 142 G~ivd 146 (193)
T d1mx3a1 142 GGLVD 146 (193)
T ss_dssp TTSBC
T ss_pred ceEEc
Confidence 75444
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.32 E-value=0.0016 Score=57.42 Aligned_cols=113 Identities=11% Similarity=0.069 Sum_probs=67.4
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCC--eeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--VLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~--~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
++.||+|+|| |.+|.+++..|+.. ..|-.. .++.+++.++..- .+ +++.-.++. ..+ +.
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g-~v~g~~~~i~L~L~di~~~~~-~l--~g~~mdl~d-----------~a~-~~-- 84 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASG-EVFGQDQPIALKLLGSERSFQ-AL--EGVAMELED-----------SLY-PL-- 84 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGHH-HH--HHHHHHHHT-----------TTC-TT--
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcC-cccCCCceEEEEEecCccccc-hh--cchhhhhcc-----------ccc-cc--
Confidence 4468999996 99999999999976 433211 3555666554211 10 111000000 000 10
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cc--------------hhHHHHHHHHHH
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISR 182 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps--------------~~~~~vl~~i~~ 182 (461)
...+..+++..++++++|+||++- |. ..++++.+.|.+
T Consensus 85 --------------------------~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~ 138 (175)
T d7mdha1 85 --------------------------LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNA 138 (175)
T ss_dssp --------------------------EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 014567888899999999999976 21 135666666666
Q ss_pred HhhccCCCCEEEEEeecCc
Q 012547 183 YWKERITVPVIISLAKGVE 201 (461)
Q Consensus 183 ~l~~~~~~~iIIs~tkGi~ 201 (461)
+.++ +..|+.++|-+.
T Consensus 139 ~a~~---~~~vlvv~NPvd 154 (175)
T d7mdha1 139 VASK---NVKVLVVGNPCN 154 (175)
T ss_dssp HSCT---TCEEEECSSSHH
T ss_pred hCCC---CcEEEEecCcHH
Confidence 6554 567777777544
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.30 E-value=0.00015 Score=65.50 Aligned_cols=93 Identities=14% Similarity=0.192 Sum_probs=64.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.++|+|||.|.+|..+|..+..- | .+|..|++...... ..
T Consensus 45 ~ktvgIiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~---------------------------~~------- 84 (199)
T d1dxya1 45 QQTVGVMGTGHIGQVAIKLFKGF-G-----AKVIAYDPYPMKGD---------------------------HP------- 84 (199)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSSC---------------------------CT-------
T ss_pred ceeeeeeeccccccccccccccc-c-----eeeeccCCccchhh---------------------------hc-------
Confidence 37899999999999999999765 6 89999988653110 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
... ..++++.++.||+|++++|.. ..+.++ ++....+++ ++++|.++-|=
T Consensus 85 ------------------------~~~-~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~---~a~lIN~aRG~ 136 (199)
T d1dxya1 85 ------------------------DFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKP---GAIVINTARPN 136 (199)
T ss_dssp ------------------------TCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCT---TEEEEECSCTT
T ss_pred ------------------------chh-HHHHHHHHHhcccceeeecccccccccccHHHhhccCC---ceEEEecccHh
Confidence 122 246788889999999999853 333333 233344565 68889888774
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 137 vvd 139 (199)
T d1dxya1 137 LID 139 (199)
T ss_dssp SBC
T ss_pred hhh
Confidence 443
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.28 E-value=0.00013 Score=65.81 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=63.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||.|.+|..+|..+..- | .+|..|++....... ..
T Consensus 44 k~vgIiG~G~IG~~va~~l~~f-g-----~~V~~~d~~~~~~~~--------------------------~~-------- 83 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGF-G-----AKVITYDIFRNPELE--------------------------KK-------- 83 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHHHH--------------------------HT--------
T ss_pred CeEEEecccccchhHHHhHhhh-c-----ccccccCcccccccc--------------------------cc--------
Confidence 7899999999999999999754 7 899999876531100 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.. ...++++.+++||+|++++|- ...+.++ ++....+++ ++++|.++-|=.
T Consensus 84 -----------------------~~-~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~---~a~lIN~sRG~i 136 (197)
T d1j4aa1 84 -----------------------GY-YVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ---DVVIVNVSRGPL 136 (197)
T ss_dssp -----------------------TC-BCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCT---TEEEEECSCGGG
T ss_pred -----------------------ee-eeccccccccccccccccCCccccccccccHHHHhhhCC---ccEEEecCchhh
Confidence 01 124678889999999999994 3333333 233334555 688888887744
Q ss_pred cc
Q 012547 202 AE 203 (461)
Q Consensus 202 ~~ 203 (461)
.+
T Consensus 137 vd 138 (197)
T d1j4aa1 137 VD 138 (197)
T ss_dssp BC
T ss_pred hh
Confidence 43
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.21 E-value=0.00021 Score=64.06 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=67.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.+|..+|..+..- | .+|..|++.....+. ....
T Consensus 47 g~tvgIiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~~-------------------------~~~~------ 89 (191)
T d1gdha1 47 NKTLGIYGFGSIGQALAKRAQGF-D-----MDIDYFDTHRASSSD-------------------------EASY------ 89 (191)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSCCCHHH-------------------------HHHH------
T ss_pred ccceEEeecccchHHHHHHHHhh-c-----cccccccccccccch-------------------------hhcc------
Confidence 37899999999999999988765 6 889999987542211 0000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
......++++.++.||+|++++|- ..++.++ ++....+++ ++++|.++-|=
T Consensus 90 ------------------------~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~---~a~lIN~sRG~ 142 (191)
T d1gdha1 90 ------------------------QATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQ---GAIVVNTARGD 142 (191)
T ss_dssp ------------------------TCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCT---TEEEEECSCGG
T ss_pred ------------------------cccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCC---ccEEEecCCcc
Confidence 123346788899999999999995 3444444 233344565 78899888875
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 143 ivd 145 (191)
T d1gdha1 143 LVD 145 (191)
T ss_dssp GBC
T ss_pred chh
Confidence 444
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.15 E-value=0.00093 Score=58.85 Aligned_cols=93 Identities=28% Similarity=0.436 Sum_probs=70.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh-hhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
++|+|||.|+=|.+=|..|.++ | .+|++--|.... .+. . .
T Consensus 17 k~IaViGYGsQG~AhAlNLrDS-G-----~~V~VGLr~gs~s~~~-----------A---------------~------- 57 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDS-G-----VDVTVGLRSGSATVAK-----------A---------------E------- 57 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECCTTCHHHHH-----------H---------------H-------
T ss_pred CEEEEEeeCcHhHHHHhhhhhc-C-----CCEEEEcCCCCccHHH-----------H---------------h-------
Confidence 6899999999999999999999 8 899987776531 110 0 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHH-HHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.+| +++ -+.+||++.||+|++.+|.....++.+ +|.|++++ ++. +.++-|+.
T Consensus 58 ----------~~G------------f~v-~~~~eA~~~aDiim~L~PD~~q~~vy~~~I~p~lk~---g~~-L~FaHGfn 110 (182)
T d1np3a2 58 ----------AHG------------LKV-ADVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKK---GAT-LAFAHGFS 110 (182)
T ss_dssp ----------HTT------------CEE-ECHHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCT---TCE-EEESCCHH
T ss_pred ----------hhc------------ccc-ccHHHHhhhcCeeeeecchHHHHHHHHHhhhhhcCC---CcE-EEEeccce
Confidence 012 222 457889999999999999999999995 79999998 454 45666765
Q ss_pred c
Q 012547 202 A 202 (461)
Q Consensus 202 ~ 202 (461)
.
T Consensus 111 I 111 (182)
T d1np3a2 111 I 111 (182)
T ss_dssp H
T ss_pred E
Confidence 4
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.14 E-value=0.0005 Score=62.64 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=68.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCC-CCCeeEEEEecCch-hhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYL-RDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~-~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.+||+|||.|+=|.+=|..|.++ |.- .++.+|++--|... ..+...+
T Consensus 44 ~KkIaViGYGsQG~AhAlNLrDS-G~~~~sgv~V~VGLr~gs~S~~kA~~------------------------------ 92 (226)
T d1qmga2 44 IKQIGVIGWGSQAPAQAQNLKDS-LTEAKSDVVVKIGLRKGSNSFAEARA------------------------------ 92 (226)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHH-HHHTTCCCEEEEEECTTCSCHHHHHH------------------------------
T ss_pred CCEEEEEEeccHHHHHHHhChhh-cccccCCceEEEEeCCCChhHHHHHH------------------------------
Confidence 45899999999999999999996 510 00145766655542 2221100
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+||.. .+.. .-+.+||++.||+|++.+|.....++.++|.|++++ ++. +..+-|+
T Consensus 93 -------------dGf~v-------~~~~-v~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~---G~~-L~FaHGF 147 (226)
T d1qmga2 93 -------------AGFSE-------ENGT-LGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKP---NSI-LGLSHGF 147 (226)
T ss_dssp -------------TTCCG-------GGTC-EEEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCT---TCE-EEESSSH
T ss_pred -------------cCCcc-------CCCc-ccCHHHHHhhCCEEEEecchHHHHHHHHHHHHhcCC---Cce-eeecchh
Confidence 11110 0111 124678899999999999999999999999999998 554 4455566
Q ss_pred cc
Q 012547 201 EA 202 (461)
Q Consensus 201 ~~ 202 (461)
..
T Consensus 148 nI 149 (226)
T d1qmga2 148 LL 149 (226)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00059 Score=59.49 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=51.8
Q ss_pred CeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCC
Q 012547 147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIE 226 (461)
Q Consensus 147 ~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~ 226 (461)
++.+++|+++...++|+||=.+.+....+.++....+ +..+|+.|.|+..++. +.+++...
T Consensus 58 ~~~~~~~~~~~~~~~DViIDFs~p~~~~~~~~~a~~~------~~~~ViGTTG~~~~~~---------~~i~~~a~---- 118 (162)
T d1diha1 58 GVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQH------GKGMVIGTTGFDEAGK---------QAIRDAAA---- 118 (162)
T ss_dssp SCCEESCSTTTTTSCSEEEECSCHHHHHHHHHHHHHT------TCEEEECCCCCCHHHH---------HHHHHHTT----
T ss_pred CceeeccHHHHhcccceEEEeccHHHHHHHHHHHHhc------cceeEEecCCCcHHHH---------HHHHHHcC----
Confidence 4567788888889999999999998888877765442 4677888889876521 34555431
Q ss_pred cEEEEeCcchhH
Q 012547 227 NILYLGGPNIAS 238 (461)
Q Consensus 227 ~v~vlsGPn~a~ 238 (461)
.+.++..||+..
T Consensus 119 ~ipi~~apN~Sl 130 (162)
T d1diha1 119 DIAIVFAANFSM 130 (162)
T ss_dssp TSCEEECSCCCH
T ss_pred CCCEEEEccccH
Confidence 234678899864
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.10 E-value=0.0013 Score=54.94 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=40.9
Q ss_pred cCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchh
Q 012547 159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIA 237 (461)
Q Consensus 159 ~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a 237 (461)
.++|+||=.+.+..+.+.++....+ +..+|+.|.|++.+. .+.+++... .+.++..||+.
T Consensus 40 ~~~DVvIDFS~p~~~~~~l~~~~~~------~~p~ViGTTG~~~~~---------~~~i~~~ak----~~pv~~a~N~s 99 (128)
T d1vm6a3 40 DSPDVVIDFSSPEALPKTVDLCKKY------RAGLVLGTTALKEEH---------LQMLRELSK----EVPVVQAYSRT 99 (128)
T ss_dssp SCCSEEEECSCGGGHHHHHHHHHHH------TCEEEECCCSCCHHH---------HHHHHHHTT----TSEEEECSCTH
T ss_pred ccCCEEEEecCHHHHHHHHHHHHhc------CCCEEEEcCCCCHHH---------HHHHHHHHh----hCCEEeeeccC
Confidence 4689999999999988888776543 467888898987652 134555431 23456667764
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.01 E-value=0.00041 Score=61.64 Aligned_cols=97 Identities=18% Similarity=0.180 Sum_probs=66.8
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
...++|+|+|.|.+|..+|..+..- | .+|..|++.....+. ...
T Consensus 42 l~~k~vgiiG~G~IG~~va~~~~~f-g-----~~v~~~d~~~~~~~~--------------------------~~~---- 85 (184)
T d1ygya1 42 IFGKTVGVVGLGRIGQLVAQRIAAF-G-----AYVVAYDPYVSPARA--------------------------AQL---- 85 (184)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCHHHH--------------------------HHH----
T ss_pred ccceeeeeccccchhHHHHHHhhhc-c-----ceEEeecCCCChhHH--------------------------hhc----
Confidence 3447999999999999999988754 6 789999877532110 000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tk 198 (461)
.++ ..++++.+++||+|++++|- ..++.++ ++....+++ ++++|.++-
T Consensus 86 --------------------------~~~-~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~---~a~lIN~sR 135 (184)
T d1ygya1 86 --------------------------GIE-LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKP---GVIIVNAAR 135 (184)
T ss_dssp --------------------------TCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEECSC
T ss_pred --------------------------Cce-eccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCC---CceEEEecc
Confidence 122 24678889999999999994 4455554 234444565 688998887
Q ss_pred cCccc
Q 012547 199 GVEAE 203 (461)
Q Consensus 199 Gi~~~ 203 (461)
|=..+
T Consensus 136 G~iVd 140 (184)
T d1ygya1 136 GGLVD 140 (184)
T ss_dssp TTSBC
T ss_pred hhhhh
Confidence 74443
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.86 E-value=0.0023 Score=54.21 Aligned_cols=98 Identities=13% Similarity=0.061 Sum_probs=68.5
Q ss_pred HHHHHhhcCCCCCCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHH
Q 012547 30 DELRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLR 105 (461)
Q Consensus 30 ~~~~~~~~~~~~~~mkI~IIGa----GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~ 105 (461)
+++|+++-. +.+|+|||+ |.+|..+...|.+. | ++|..+....+.+.
T Consensus 10 ~~i~~~L~~----~ksIAVVGaS~~~~~~g~~v~~~L~~~-g-----~~v~pVnP~~~~i~------------------- 60 (139)
T d2d59a1 10 EDIREILTR----YKKIALVGASPKPERDANIVMKYLLEH-G-----YDVYPVNPKYEEVL------------------- 60 (139)
T ss_dssp HHHHHHHHH----CCEEEEETCCSCTTSHHHHHHHHHHHT-T-----CEEEEECTTCSEET-------------------
T ss_pred HHHHHHHhc----CCeEEEEeecCCCCCchHHHHHHHHHC-C-----CEEEEECCcccccC-------------------
Confidence 346666533 347999996 67999999999988 8 88777765432111
Q ss_pred hhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhh
Q 012547 106 RLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185 (461)
Q Consensus 106 ~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~ 185 (461)
+..+..++++.-...|++++++|+..+.++++++...
T Consensus 61 -----------------------------------------G~~~~~sl~dlp~~iD~v~i~vp~~~~~~~~~e~~~~-- 97 (139)
T d2d59a1 61 -----------------------------------------GRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKK-- 97 (139)
T ss_dssp -----------------------------------------TEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHHHH--
T ss_pred -----------------------------------------CCcccccccccCccceEEEEEeCHHHHHHHHHHHHHh--
Confidence 2233345555445679999999999999999998753
Q ss_pred ccCCCCEEEEEeecCccc
Q 012547 186 ERITVPVIISLAKGVEAE 203 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~~~ 203 (461)
+...++++.|...+
T Consensus 98 ----g~k~v~~~~G~~~e 111 (139)
T d2d59a1 98 ----GAKVVWFQYNTYNR 111 (139)
T ss_dssp ----TCSEEEECTTCCCH
T ss_pred ----CCCEEEEeccccCH
Confidence 23357788886654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.77 E-value=0.001 Score=58.10 Aligned_cols=40 Identities=15% Similarity=0.034 Sum_probs=34.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
..++|.|+|+|..+.+++..|.+. + .+|++++|+.++++.
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~-~-----~~i~I~nR~~~~a~~ 56 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQA-Q-----QNIVLANRTFSKTKE 56 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHccc-C-----ceeeeccchHHHHHH
Confidence 446899999999999999999876 5 789999999887664
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.00068 Score=60.20 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=33.6
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++||+|+|+ |.+|++++..|.++ | ++|+++.|+++++.
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~-g-----~~V~~~~R~~~~~~ 41 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQA-G-----YEVTVLVRDSSRLP 41 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCGGGSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEEcChhhcc
Confidence 478999995 99999999999999 8 99999999986543
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.0043 Score=53.72 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=35.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
..++|.|+|+|..+.+++..|++. | .+|++++|+.++++.
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~-g-----~~i~I~nRt~~ka~~ 56 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSL-D-----CAVTITNRTVSRAEE 56 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHhccc-c-----eEEEeccchHHHHHH
Confidence 447899999999999999999998 7 789999999887664
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.62 E-value=0.0012 Score=59.02 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=32.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..+||+|||+|..|.+.|..|+++ | ++|++++|+.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~-G-----~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARK-G-----YSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHC-C-----CCEEEEeCCC
Confidence 456899999999999999999999 8 9999999864
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.60 E-value=0.0043 Score=53.00 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=30.1
Q ss_pred HHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 156 ~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+...++|++|+|+|+..-.++...+... .. .++||+++.-+
T Consensus 60 ~~~~~~DvvF~alp~~~s~~~~~~l~~~-g~---~~~VIDlSsdf 100 (147)
T d1mb4a1 60 ESLKQLDAVITCQGGSYTEKVYPALRQA-GW---KGYWIDAASTL 100 (147)
T ss_dssp HHHTTCSEEEECSCHHHHHHHHHHHHHT-TC---CSEEEESSSTT
T ss_pred hhhccccEEEEecCchHHHHHhHHHHHc-CC---ceEEEeCCccc
Confidence 3468999999999999988888777642 11 35788877443
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.58 E-value=0.0017 Score=59.49 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=43.4
Q ss_pred cchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 22 NGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|...|+-|...+.-.-.+ .++.||+|||+|.-|.+.|..|+++ | ++|+++.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~-~~pkkV~IIGaG~aGLsaA~~L~~~-G-----~~V~vlE~~~ 63 (370)
T d2iida1 10 ENDYEEFLEIARNGLKAT-SNPKHVVIVGAGMAGLSAAYVLAGA-G-----HQVTVLEASE 63 (370)
T ss_dssp CTTHHHHHHHHHHCSCCC-SSCCEEEEECCBHHHHHHHHHHHHH-T-----CEEEEECSSS
T ss_pred CccHHHHHHHHhcCCCCC-CCCCeEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCC
Confidence 444677676666655434 4667999999999999999999999 8 9999998765
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.55 E-value=0.0011 Score=58.06 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=36.5
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 38 ~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+..++.||.|||+|..|..-+.....- | .+|+++|.+.+.++.
T Consensus 27 ~~gv~pa~V~ViGaGvaG~~A~~~A~~l-G-----A~V~~~D~~~~~l~~ 70 (168)
T d1pjca1 27 VPGVKPGKVVILGGGVVGTEAAKMAVGL-G-----AQVQIFDINVERLSY 70 (168)
T ss_dssp BTTBCCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCCCCCcEEEEECCChHHHHHHHHHhhC-C-----CEEEEEeCcHHHHHH
Confidence 3445678999999999999888777776 8 899999999887654
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.0055 Score=52.21 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=28.1
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
...++|++|+|+|+..-+.+..++... .. +.+||+.+.
T Consensus 62 ~~~~~DivF~a~~~~~s~~~~~~~~~~-g~---~~~VID~Ss 99 (146)
T d1t4ba1 62 ALKALDIIVTCQGGDYTNEIYPKLRES-GW---QGYWIDAAS 99 (146)
T ss_dssp HHHTCSEEEECSCHHHHHHHHHHHHHT-TC---CCEEEECSS
T ss_pred hhhcCcEEEEecCchHHHHhhHHHHhc-CC---CeecccCCc
Confidence 468999999999999888888777642 11 356777663
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.45 E-value=0.0039 Score=52.02 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=62.9
Q ss_pred CCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 42 ~~mkI~IIGa----GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
++.+|+|||+ |.+|..+...|... | ..+|+.+....+.+.
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~-~----~g~v~pVnP~~~~i~------------------------------- 50 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEY-K----KGKVYPVNIKEEEVQ------------------------------- 50 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTC-C----SSEEEEECSSCSEET-------------------------------
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHc-C----CCcEEEeccCccccC-------------------------------
Confidence 4578999997 88998888888654 3 257777765543211
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
++.+..++.+.-...|++++++|+..+.++++++... . -..++.++
T Consensus 51 -----------------------------G~~~y~sl~dlp~~vDlvvi~vp~~~~~~~~~~~~~~-g----~~~~vi~s 96 (129)
T d2csua1 51 -----------------------------GVKAYKSVKDIPDEIDLAIIVVPKRFVKDTLIQCGEK-G----VKGVVIIT 96 (129)
T ss_dssp -----------------------------TEECBSSTTSCSSCCSEEEECSCHHHHHHHHHHHHHH-T----CCEEEECC
T ss_pred -----------------------------CeEeecchhhcCCCCceEEEecChHHhHHHHHHHHHc-C----CCEEEEec
Confidence 2233344444334679999999999999999998753 1 23466788
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
.|+...
T Consensus 97 ~Gf~e~ 102 (129)
T d2csua1 97 AGFGET 102 (129)
T ss_dssp CSSTTS
T ss_pred cccccc
Confidence 888653
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.41 E-value=0.0031 Score=54.59 Aligned_cols=40 Identities=18% Similarity=0.392 Sum_probs=34.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+||.|+|+|..|.+++..|.+. |. .+|++++|+.++++.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~-g~----~~I~I~nR~~~ka~~ 56 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNS-GF----EKLKIYARNVKTGQY 56 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHT-TC----CCEEEECSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CC----CEEEEecccHHHHHH
Confidence 46899999999999999999998 71 489999999876654
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.41 E-value=0.0046 Score=53.39 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDS 65 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~ 65 (461)
.+..++||+|||+|.||...+..+.+.
T Consensus 3 ~~~~k~kv~iIG~G~~g~~h~~~l~~~ 29 (172)
T d1lc0a1 3 TNSGKFGVVVVGVGRAGSVRLRDLKDP 29 (172)
T ss_dssp CCCCSEEEEEECCSHHHHHHHHHHTSH
T ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHhC
Confidence 456779999999999999988887654
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.28 E-value=0.0029 Score=52.48 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=53.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++.||+|+|||++|.+++..+..+.| +++. +++-+++..- +.+.++
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~-----~~iv~fiDdd~~k~G-------------------------~~I~Gi--- 48 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGES-----FELRGFFDVDPEKVG-------------------------RPVRGG--- 48 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSS-----EEEEEEEESCTTTTT-------------------------CEETTE---
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcCC-----cEEEEEEeCchHhcC-------------------------CEECCE---
Confidence 45699999999999999887654313 5544 5565553211 112221
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh-cCCCEEEEcCCchhHHHHHHHHHHH
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRY 183 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av-~~aDiIIiaVps~~~~~vl~~i~~~ 183 (461)
++...+++++.+ +..++.++++|+...+++++++..+
T Consensus 49 --------------------------~V~~~~~l~~~~~~~i~iai~~i~~~~~~~I~d~l~~~ 86 (126)
T d2dt5a2 49 --------------------------VIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAA 86 (126)
T ss_dssp --------------------------EEEEGGGHHHHSTTTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred --------------------------EEecHHHHHHHHhhcccEEEEeCCHHHHHHHHHHHHHc
Confidence 233334454433 3468999999999999988887653
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=96.25 E-value=0.012 Score=50.51 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=24.6
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEEE-EecCch
Q 012547 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIRI-WRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~a-lA~~La~~~G~~~~~~~V~l-~~r~~~ 83 (461)
+++||+|||+|.+|.. +...|... . ..++.. .+|+.+
T Consensus 3 kkirvaIIGaG~ig~~~~~~~l~~~-~----~~el~avas~~~~ 41 (157)
T d1nvmb1 3 QKLKVAIIGSGNIGTDLMIKVLRNA-K----YLEMGAMVGIDAA 41 (157)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHC-S----SEEEEEEECSCTT
T ss_pred CCcEEEEEcCcHHHHHHHHHHHhhC-C----cceEEEEEecchh
Confidence 4689999999999985 55555433 2 145554 466654
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.23 E-value=0.0014 Score=58.71 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=31.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|+|+|||+|.-|.+.|..|+++ | ++|+++.++.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~-G-----~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSR-G-----TDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTT-T-----CCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCC
Confidence 7999999999999999999999 8 9999998764
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.14 E-value=0.0068 Score=51.33 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=27.5
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
++|||+|||| |+.|.-+.+.|.+. . + |..++.....+
T Consensus 1 q~mnVaIvGATGyvG~eli~lL~~~-~-h-P~~~l~~~~s~ 38 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGEALVGLLDER-D-F-PLHRLHLLASA 38 (144)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHT-T-C-CCSCEEEEECT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhc-C-C-CceEEEEEeec
Confidence 4699999998 99999999999865 3 1 11466665544
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.07 E-value=0.012 Score=47.87 Aligned_cols=88 Identities=20% Similarity=0.222 Sum_probs=61.8
Q ss_pred ceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 44 LRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 44 mkI~IIGa----GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
++|+|||+ |.+|..+...|.+. | ++|..+..+.+.+.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~-g-----~~V~pVnP~~~~i~--------------------------------- 42 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSK-G-----FEVLPVNPNYDEIE--------------------------------- 42 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT-T-----CEEEEECTTCSEET---------------------------------
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHC-C-----CEEEEEcccccccc---------------------------------
Confidence 57999995 78999999999988 8 77776654432110
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
++.+..++++.-...|++++++|+..+.++++++... +...+.++.|
T Consensus 43 ---------------------------G~~~y~sl~~lp~~~D~vvi~vp~~~~~~~l~~~~~~------g~k~v~~~~g 89 (116)
T d1y81a1 43 ---------------------------GLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVEA------GFKKLWFQPG 89 (116)
T ss_dssp ---------------------------TEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHHT------TCCEEEECTT
T ss_pred ---------------------------CccccccchhccccceEEEEEeCHHHHHHHHHHHHhc------CCceEEeccc
Confidence 2333345555445679999999999999999987652 2334667777
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
...+
T Consensus 90 ~~~~ 93 (116)
T d1y81a1 90 AESE 93 (116)
T ss_dssp SCCH
T ss_pred hhhH
Confidence 6544
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.04 E-value=0.007 Score=49.55 Aligned_cols=56 Identities=23% Similarity=0.340 Sum_probs=42.7
Q ss_pred cccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 20 HTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
||--++++- +++|..+. ...||+|||+|..|.-+|..|++. | .+|+++.+.+.-+.
T Consensus 12 ~~lrtl~Da-~~l~~~~~----~~~~vvIIGgG~iG~E~A~~l~~~-g-----~~Vtli~~~~~~l~ 67 (121)
T d1d7ya2 12 HTLRTLEDA-RRIQAGLR----PQSRLLIVGGGVIGLELAATARTA-G-----VHVSLVETQPRLMS 67 (121)
T ss_dssp EECCSHHHH-HHHHHHCC----TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSTTT
T ss_pred EEeCCHHHH-HHHHHhhh----cCCeEEEECcchhHHHHHHHhhcc-c-----ceEEEEeecccccc
Confidence 444555542 55555552 236899999999999999999998 8 99999999886553
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.01 E-value=0.0086 Score=57.94 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=55.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|..+..-+..+..-.+ -.+|.+|+|+++..++..+ .+. ...+
T Consensus 127 da~~l~iiG~G~QA~~~~~a~~~v~~----i~~V~v~~r~~~~~~~~~~-----~l~--------------~~~g----- 178 (340)
T d1x7da_ 127 NARKMALIGNGAQSEFQALAFHKHLG----IEEIVAYDTDPLATAKLIA-----NLK--------------EYSG----- 178 (340)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSC----CCEEEEECSSHHHHHHHHH-----HHT--------------TCTT-----
T ss_pred CCceEEEEcccHHHHHHHHHHhhhcc----eeeeEEEecChHHHHHHHH-----hhh--------------hccC-----
Confidence 44689999999999988887765423 2689999999876654211 110 0011
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~ 171 (461)
..+..++++++++++||+|+.|+++.
T Consensus 179 ------------------------~~v~~~~s~~eav~~ADIi~t~Tas~ 204 (340)
T d1x7da_ 179 ------------------------LTIRRASSVAEAVKGVDIITTVTADK 204 (340)
T ss_dssp ------------------------CEEEECSSHHHHHTTCSEEEECCCCS
T ss_pred ------------------------CCceecCCHHHHHhcCCceeeccccC
Confidence 13667889999999999999999654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.0079 Score=46.72 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+||+|+|+|-.|.+.|..|++. | .+|++|+.+..
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~-g-----~~v~~~D~~~~ 39 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLAR-G-----VTPRVMDTRMT 39 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEESSSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEeeCCcC
Confidence 46899999999999999999999 8 99999998653
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=95.97 E-value=0.015 Score=52.83 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=65.6
Q ss_pred hhcCCCCCCceEEEECccHHHHHHHH----HHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhh
Q 012547 35 LMGKAEGDPLRIVGVGAGAWGSVFTA----MLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIR 109 (461)
Q Consensus 35 ~~~~~~~~~mkI~IIGaGamG~alA~----~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 109 (461)
+-.++..+++||+|||+|.+|+.++. .+... . ++.+|. +++++.+.++.+.+ .
T Consensus 8 ~~~~~~~k~irvgiIG~G~~~~~~~~~h~~ai~~~-~---~~~~ivav~d~~~~~~~~~~~--------~---------- 65 (237)
T d2nvwa1 8 LSTVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQL-S---SQFQIVALYNPTLKSSLQTIE--------Q---------- 65 (237)
T ss_dssp GGSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHT-T---TTEEEEEEECSCHHHHHHHHH--------H----------
T ss_pred cccCCCCCCeEEEEEecCccccHHHHHHHHHHHhc-C---CCeEEEEEEcCCHHHHHHHHH--------h----------
Confidence 34567788899999999986544443 23322 1 125655 78888765543111 0
Q ss_pred cccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhcc
Q 012547 110 RCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKER 187 (461)
Q Consensus 110 n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~ 187 (461)
| + + ......+|+++.+. +-|+|++|+|.....+........-..-
T Consensus 66 ---~--~---------~-------------------~~~~~~~~~~~l~~~~~iD~V~i~tp~~~h~~~~~~al~aG~~~ 112 (237)
T d2nvwa1 66 ---L--Q---------L-------------------KHATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNILEHSSQN 112 (237)
T ss_dssp ---T--T---------C-------------------TTCEEESCHHHHHHCTTCSEEEECSCHHHHHHHHHHHHHHSSSC
T ss_pred ---c--c---------c-------------------ccceeecchhhcccccccceeeccCCCcchhhHHHHHHHhcccc
Confidence 1 0 0 02344577887764 5789999999988777766554421000
Q ss_pred CCCCEEEEEeecCccc
Q 012547 188 ITVPVIISLAKGVEAE 203 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~~ 203 (461)
..+. -|.+-|-+...
T Consensus 113 ~~~k-~V~~EKPla~~ 127 (237)
T d2nvwa1 113 LNLR-YLYVEWALAAS 127 (237)
T ss_dssp SSCC-EEEEESSSSSS
T ss_pred cCCc-eEEEeccccCC
Confidence 0022 35588877654
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.96 E-value=0.0097 Score=56.91 Aligned_cols=42 Identities=7% Similarity=0.107 Sum_probs=33.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+..+++|||+|..+..-+..++.... -.+|.+|+|++++.+.
T Consensus 124 ~~~~l~iiGaG~QA~~~~~al~~~~~----i~~i~v~~r~~e~~~~ 165 (320)
T d1omoa_ 124 NSSVFGFIGCGTQAYFQLEALRRVFD----IGEVKAYDVREKAAKK 165 (320)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSC----CCEEEEECSSHHHHHH
T ss_pred CccEEEEecCcccHHHHHHHHHHHhh----hhhcccccCCHHHHHH
Confidence 45689999999999999988876521 2689999999887654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.85 E-value=0.003 Score=54.57 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=32.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~ 83 (461)
.+.||+|||+|..|...|..|++. | + +|+++.+...
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~-G-----~~~V~v~E~~~~ 39 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARL-G-----YSDITIFEKQEY 39 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEEESSSS
T ss_pred CCCEEEEECChHHHHHHHHHHHHC-C-----CCeEEEEEecCc
Confidence 457999999999999999999999 8 6 6999998764
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=95.84 E-value=0.016 Score=50.40 Aligned_cols=46 Identities=11% Similarity=0.201 Sum_probs=31.6
Q ss_pred EEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 149 KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 149 ~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
....+......+.|++|+|+|...-.+....+.. . +..+|.++.-+
T Consensus 61 ~~~~~~~~~~~~~dvvf~alp~~~s~~~~~~~~~---~---~~~vIDlSadf 106 (179)
T d2g17a1 61 QPMSDVRDFSADVDVVFLATAHEVSHDLAPQFLQ---A---GCVVFDLSGAF 106 (179)
T ss_dssp EEESCGGGTCTTCCEEEECSCHHHHHHHHHHHHH---T---TCEEEECSSTT
T ss_pred ccchhhhhhhcccceeeccccchhHHHHhhhhhh---c---Cceeecccccc
Confidence 3344555556789999999999888777666543 2 56777766443
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.0078 Score=52.58 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=36.2
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+....+|.|+|+|..|.+++..|.+. | ..++++++|+.+.+++
T Consensus 15 ~l~~k~vlIlGaGGaarai~~al~~~-g----~~~i~i~nR~~~~~~~ 57 (182)
T d1vi2a1 15 DIKGKTMVLLGAGGASTAIGAQGAIE-G----LKEIKLFNRRDEFFDK 57 (182)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-T----CSEEEEEECSSTTHHH
T ss_pred CcCCCEEEEECCcHHHHHHHHHHhhc-C----CceEeeeccchHHHHH
Confidence 33457999999999999999999998 7 2689999999877664
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.0049 Score=54.25 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=34.6
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+...++||+|||+|.-|...|..|++. | |+|+++.++..
T Consensus 39 ~~~~~k~V~IIGaGPAGL~AA~~la~~-G-----~~Vtl~E~~~~ 77 (179)
T d1ps9a3 39 PAVQKKNLAVVGAGPAGLAFAINAAAR-G-----HQVTLFDAHSE 77 (179)
T ss_dssp SCSSCCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEESSSS
T ss_pred CCCCCcEEEEECccHHHHHHHHHHHhh-c-----cceEEEeccCc
Confidence 444568999999999999999999999 8 99999998764
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.74 E-value=0.015 Score=47.39 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=37.5
Q ss_pred HHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 30 ~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
+.+|..+ .+....||+|||+|.+|.-+|..|++. | .+|+++.+.+..+
T Consensus 19 ~~i~~~~--~~~~~k~vvViGgG~iG~E~A~~l~~~-g-----~~Vtlie~~~~~l 66 (123)
T d1nhpa2 19 IKLKQKT--VDPEVNNVVVIGSGYIGIEAAEAFAKA-G-----KKVTVIDILDRPL 66 (123)
T ss_dssp HHHHHHH--TCTTCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSTT
T ss_pred HHHHHHh--hccCCCEEEEECChHHHHHHHHHhhcc-c-----eEEEEEEecCccc
Confidence 3444444 233446999999999999999999999 8 9999999876543
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=95.73 E-value=0.015 Score=48.64 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=68.9
Q ss_pred HHHHHhhcCCCCCCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHH
Q 012547 30 DELRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLR 105 (461)
Q Consensus 30 ~~~~~~~~~~~~~~mkI~IIGa----GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~ 105 (461)
.++|.++- .+.+|+|||+ +.+|..+...|.+. | +++.++..+... +
T Consensus 4 ~~i~~~L~----~pksIAVVGaS~~~~k~g~~v~~~L~~~-g-----~~~~~v~~~~~~-~------------------- 53 (136)
T d1iuka_ 4 QELRAYLS----QAKTIAVLGAHKDPSRPAHYVPRYLREQ-G-----YRVLPVNPRFQG-E------------------- 53 (136)
T ss_dssp HHHHHHHH----HCCEEEEETCCSSTTSHHHHHHHHHHHT-T-----CEEEEECGGGTT-S-------------------
T ss_pred HHHHHHHh----CCCeEEEEeecCCCCCchHHHHHHHhcC-C-----CCceEEEecccc-c-------------------
Confidence 35666542 3457999997 78999999999988 8 889888665320 0
Q ss_pred hhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhh
Q 012547 106 RLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185 (461)
Q Consensus 106 ~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~ 185 (461)
... +..+..++.+.-...|++++++|+..+.++++++... .
T Consensus 54 -------~i~-------------------------------g~~~~~~l~~i~~~iD~v~v~~p~~~v~~~v~~~~~~-g 94 (136)
T d1iuka_ 54 -------ELF-------------------------------GEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLAL-R 94 (136)
T ss_dssp -------EET-------------------------------TEECBSSGGGCCSCCSEEEECSCHHHHTTTHHHHHHH-C
T ss_pred -------eee-------------------------------ceecccchhhccCCCceEEEeccHHHHHHHHHHHHhh-C
Confidence 000 2334455555445679999999999999999998753 2
Q ss_pred ccCCCCEEEEEeecCccc
Q 012547 186 ERITVPVIISLAKGVEAE 203 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~~~ 203 (461)
. . .+.++.|...+
T Consensus 95 ~---k--~i~~q~G~~~~ 107 (136)
T d1iuka_ 95 P---G--LVWLQSGIRHP 107 (136)
T ss_dssp C---S--CEEECTTCCCH
T ss_pred C---C--eEEEecCccCH
Confidence 1 2 35678887654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.71 E-value=0.0046 Score=55.59 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=32.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+||+|||+|.-|.++|..|+++ | ++|+++.++++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~-G-----~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDA-G-----VDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 47999999999999999999999 8 99999998764
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.69 E-value=0.014 Score=51.10 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=26.5
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
||||+|+|| |..|.-+.+.|+++ - +.++.....+
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P----~~ei~~l~s~ 35 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSR 35 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECS
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-C----CceEEEeecc
Confidence 589999997 99999999999876 3 2566655433
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.60 E-value=0.0086 Score=48.29 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=34.5
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
..+.+|+|||+|..|.-+|..|++. | .+|+++.|.+..+
T Consensus 20 ~~p~~v~IiGgG~ig~E~A~~l~~~-G-----~~Vtlve~~~~il 58 (117)
T d1ebda2 20 EVPKSLVVIGGGYIGIELGTAYANF-G-----TKVTILEGAGEIL 58 (117)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSSS
T ss_pred hcCCeEEEECCCccceeeeeeeccc-c-----cEEEEEEecceec
Confidence 3457999999999999999999998 8 9999999887644
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.51 E-value=0.012 Score=51.12 Aligned_cols=40 Identities=23% Similarity=0.119 Sum_probs=33.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (461)
..++|.|+|+|..+.+++..|++. .+|++++|+.++++.+
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~-------~~i~I~nR~~~ka~~l 56 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKD-------NNIIIANRTVEKAEAL 56 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSS-------SEEEEECSSHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHccc-------cceeeehhhhhHHHHH
Confidence 446899999999999999988654 4899999998877653
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.43 E-value=0.0014 Score=58.23 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=22.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYG 67 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G 67 (461)
|||+|||||.+|.+.|..|+++ |
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~-G 23 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER-Y 23 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-H
T ss_pred CEEEEECchHHHHHHHHHHHHC-C
Confidence 8999999999999999999999 7
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.43 E-value=0.043 Score=43.77 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=31.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
...||.|||+|..|..-|..|.+. | .+|++++....
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~-g-----a~v~v~~~~~~ 46 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEA-G-----ARLTVNALTFI 46 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHT-T-----BEEEEEESSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence 346999999999999999999999 8 89999987653
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.38 E-value=0.019 Score=47.57 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=33.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
..||+|||+|..|.-+|..|++. | .+|+++.+.+..+.
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~-g-----~~Vtvie~~~~~l~ 72 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKA-N-----MHVTLLDTAARVLE 72 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSTTT
T ss_pred CCEEEEECCchHHHHHHHHHHhh-C-----cceeeeeecccccc
Confidence 46999999999999999999999 8 99999999876543
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.36 E-value=0.0078 Score=54.05 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=32.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+|+|+|||+|.-|+++|..|++. |+ ++|+++.++++
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~-Gi----~~V~V~Er~~~ 36 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQA-GI----GKVTLLESSSE 36 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TC----SEEEEEESSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CC----CeEEEEeCCCC
Confidence 58999999999999999999999 82 48999998765
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.05 Score=46.93 Aligned_cols=50 Identities=18% Similarity=0.110 Sum_probs=40.4
Q ss_pred HhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 27 ~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.-+|-|.|..+..-.. ++++|+|.|-+|..+|..+..- | .+|.+|++++-
T Consensus 9 S~~~~~~r~t~~~l~G-k~v~V~GyG~iG~g~A~~~rg~-G-----~~V~v~e~dp~ 58 (163)
T d1li4a1 9 SLIDGIKRATDVMIAG-KVAVVAGYGDVGKGCAQALRGF-G-----ARVIITEIDPI 58 (163)
T ss_dssp HHHHHHHHHHCCCCTT-CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHH
T ss_pred hHHHHHHHHhCceecC-CEEEEeccccccHHHHHHHHhC-C-----CeeEeeecccc
Confidence 3457777777654333 5899999999999999999987 7 89999999873
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.35 E-value=0.0064 Score=54.03 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+||+|||+|.-|.+.|..|++. | ++|+++.++.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~-G-----~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIH-G-----LNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT-S-----CEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence 5899999999999999999999 8 9999998764
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.33 E-value=0.027 Score=47.14 Aligned_cols=63 Identities=19% Similarity=0.066 Sum_probs=43.0
Q ss_pred cCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHh-CCCCCcEEEEeCcchh
Q 012547 159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRAT-GVPIENILYLGGPNIA 237 (461)
Q Consensus 159 ~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~l-g~~~~~v~vlsGPn~a 237 (461)
.++|+||=.+.+..+.+.++....+ +..+|+.|.|++.+.. +.+++.. .. ..+.++..|||.
T Consensus 43 ~~~DvvIDFS~p~~~~~~~~~~~~~------~~~~ViGTTG~~~~~~---------~~l~~~~~~~--~~ipil~apNfS 105 (135)
T d1yl7a1 43 GNTEVVIDFTHPDVVMGNLEFLIDN------GIHAVVGTTGFTAERF---------QQVESWLVAK--PNTSVLIAPNFT 105 (135)
T ss_dssp TTCSEEEECCCTTTHHHHHHHHHHT------TCEEEECCCCCCHHHH---------HHHHHHHHSC--TTCEEEECSCCG
T ss_pred ccCCEEEEcccHHHHHHHHHHHHhc------CCCEEEeccccchhHH---------HHHHHHHHhc--CCCCEEEcCCcc
Confidence 4689999999999888888776542 5677888889986521 3344432 11 235578889985
Q ss_pred H
Q 012547 238 S 238 (461)
Q Consensus 238 ~ 238 (461)
.
T Consensus 106 l 106 (135)
T d1yl7a1 106 S 106 (135)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.30 E-value=0.012 Score=48.15 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=33.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
.+.|++|||+|.+|.=+|..|++. | .+|+++.+++..+
T Consensus 22 ~p~~~vIiG~G~ig~E~A~~l~~l-G-----~~Vtii~~~~~~l 59 (122)
T d1v59a2 22 IPKRLTIIGGGIIGLEMGSVYSRL-G-----SKVTVVEFQPQIG 59 (122)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSSS
T ss_pred CCCeEEEECCCchHHHHHHHHHhh-C-----cceeEEEeccccc
Confidence 457999999999999999999998 8 9999999887544
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.042 Score=45.99 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=32.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
-.|.|+|.|.+|..++..|.+. | ++|++++.+++..
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~-~-----~~v~vId~d~~~~ 39 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQR-G-----QNVTVISNLPEDD 39 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHc-C-----CCEEEEeccchhH
Confidence 4699999999999999999998 7 8999999988643
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.17 E-value=0.0086 Score=56.76 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=32.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+||+|||||--|.+.|..|+++ | ++|+++..+..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~-G-----~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEK-G-----HQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhC-C-----CCEEEEECCCC
Confidence 57999999999999999999999 8 99999998763
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.11 E-value=0.012 Score=47.80 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=36.9
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
+++++..+.. ..+|+|||+|..|.-+|..|++. | .+|+++.+.+..
T Consensus 22 ~~~l~~~~~~----~~~vvIiGgG~iG~E~A~~l~~~-g-----~~Vtlv~~~~~l 67 (122)
T d1xhca2 22 ADRIKESIEN----SGEAIIIGGGFIGLELAGNLAEA-G-----YHVKLIHRGAMF 67 (122)
T ss_dssp HHHHHHHHHH----HSEEEEEECSHHHHHHHHHHHHT-T-----CEEEEECSSSCC
T ss_pred HHHHHHHhhc----CCcEEEECCcHHHHHHHHHhhcc-c-----ceEEEEeccccc
Confidence 4455555432 25899999999999999999999 8 999999988653
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.10 E-value=0.012 Score=52.86 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=32.6
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..+..||+|||+|.-|.+.|..|+++ | ++|+++..+.
T Consensus 2 ~~~~~kViVIGaG~aGL~aA~~L~~~-G-----~~V~VlEa~~ 38 (449)
T d2dw4a2 2 TKKTGKVIIIGSGVSGLAAARQLQSF-G-----MDVTLLEARD 38 (449)
T ss_dssp SSCCCEEEEECCBHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence 34567999999999999999999999 8 9999997654
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.09 E-value=0.0079 Score=53.24 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=32.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCC--CCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGY--LRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~--~~~~~~V~l~~r~~~ 83 (461)
++.||+|||+|.-|.+.|..|++. |. ...+++|++|++.+.
T Consensus 1 rp~~VaVIGaGpaGL~aA~~L~~~-G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 1 RPYYIAIVGSGPSAFFAAASLLKA-ADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHH-HHHSTTCCEEEEEEESSSS
T ss_pred CCcEEEEECcCHHHHHHHHHHHHc-CCccccCCCceEEEecCCC
Confidence 467999999999999999999998 71 111258999998763
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.08 E-value=0.008 Score=54.56 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=29.8
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.|.|||+|.+|++.|..|++. | .+|+++++++
T Consensus 6 DvvIIGaGi~Gls~A~~La~~-G-----~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKE-N-----KNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 399999999999999999999 8 8999999864
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.04 E-value=0.012 Score=47.70 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=33.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
+.||+|||+|..|.-+|..|+.. | .+|+++.|.+..+
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~-g-----~~Vtlv~~~~~il 58 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRL-G-----IDSYIFARGNRIL 58 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSSSSC
T ss_pred CCEEEEECCchHHHHHHHHHHhc-c-----ccceeeehhcccc
Confidence 67999999999999999999988 8 9999999976544
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.98 E-value=0.014 Score=47.69 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=31.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+.|++|||+|.+|.=+|..|++- | .+|+++.|++
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~l-G-----~~Vtii~~~~ 53 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAGI-G-----LDVTVMVRSI 53 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred CCCeEEEECCCccHHHHHHHHhhc-C-----CeEEEEEech
Confidence 446899999999999999999998 8 8999998763
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=94.94 E-value=0.027 Score=49.25 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=34.7
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
-++|.|.| +|.+|.++|..|++. | .+|.+.+|+.++++.
T Consensus 23 gK~vlItGasgGIG~~ia~~la~~-G-----~~V~~~~r~~~~~~~ 62 (191)
T d1luaa1 23 GKKAVVLAGTGPVGMRSAALLAGE-G-----AEVVLCGRKLDKAQA 62 (191)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhh-c-----cchhhcccchHHHHH
Confidence 36899999 599999999999999 8 899999999987764
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.017 Score=46.51 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=33.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
-+.||+|||+|..|.-+|..|++. | ++|+++.|.+...
T Consensus 20 ~p~~vvIiGgG~ig~E~A~~l~~~-G-----~~Vtlve~~~~~l 57 (116)
T d1gesa2 20 LPERVAVVGAGYIGVELGGVINGL-G-----AKTHLFEMFDAPL 57 (116)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSSS
T ss_pred CCCEEEEECCChhhHHHHHHhhcc-c-----cEEEEEeecchhh
Confidence 457999999999999999999998 8 9999999987544
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=94.86 E-value=0.021 Score=46.29 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=34.4
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
.-+.||+|||+|.+|.=+|..|++. | .+|+++.+.+..+
T Consensus 20 ~~p~~i~IiG~G~ig~E~A~~l~~~-G-----~~Vtiv~~~~~ll 58 (119)
T d3lada2 20 NVPGKLGVIGAGVIGLELGSVWARL-G-----AEVTVLEAMDKFL 58 (119)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSSS
T ss_pred cCCCeEEEECCChHHHHHHHHHHHc-C-----CceEEEEeecccC
Confidence 3557999999999999999999998 8 9999999887544
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.82 E-value=0.011 Score=50.85 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=29.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||+|||+|.-|.+.|..|++. |+ ++|+++.++.
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~-G~----~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEA-GI----TDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHT-TC----CCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhC-CC----CcEEEEECCC
Confidence 3799999999999999999999 82 4799998865
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=94.74 E-value=0.018 Score=52.43 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=33.4
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
+++||.|+|+ |.+|+.++..|.++ | |+|++.+|+....
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~-G-----~~V~~~~R~~~~~ 40 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISL-G-----HPTYVLFRPEVVS 40 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCSCCSS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC-C-----CEEEEEECCCccc
Confidence 4679999996 99999999999999 8 9999999986543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.74 E-value=0.02 Score=50.44 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=33.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (461)
++-||.|||+|..|..-+.....- | .+|+++|.+.+..+++
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-G-----A~V~v~D~~~~~~~~l 68 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-G-----AVVMATDVRAATKEQV 68 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCSTTHHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-C-----CEEEEEeccHHHHHHH
Confidence 457999999999998876666655 7 8999999998877653
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.67 E-value=0.024 Score=49.56 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=27.5
Q ss_pred CCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012547 40 EGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (461)
Q Consensus 40 ~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~ 79 (461)
+++++||+|||| |..|.-+.+.|+++ - ..++....
T Consensus 2 s~~kikVaIlGATGyvG~elirLL~~H-P----~~ei~~l~ 37 (183)
T d2cvoa1 2 SGEEVRIAVLGASGYTGAEIVRLLANH-P----QFRIKVMT 37 (183)
T ss_dssp CSSCEEEEEESCSSHHHHHHHHHHTTC-S----SEEEEEEE
T ss_pred CCCccEEEEECcccHHHHHHHHHHHhC-C----CceEEEEe
Confidence 346789999997 99999999999976 2 25665554
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.67 E-value=0.049 Score=49.30 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=31.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.||.|||+|.+|+.+|..|+.. |. .+++++|.+.=
T Consensus 31 ~~VliiG~GglGs~va~~La~~-Gv----g~i~lvD~D~V 65 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASA-GV----GNLTLLDFDTV 65 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCBC
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCccc
Confidence 6899999999999999999999 82 58999987753
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.51 E-value=0.026 Score=45.23 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=34.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
..+.|++|||+|..|.-+|..|++. | .+|+++.+.+..+.
T Consensus 19 ~~p~~vvIiGgG~~G~E~A~~l~~~-g-----~~Vtlve~~~~il~ 58 (115)
T d1lvla2 19 ALPQHLVVVGGGYIGLELGIAYRKL-G-----AQVSVVEARERILP 58 (115)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSSSSSST
T ss_pred cCCCeEEEECCCHHHHHHHHHHhhc-c-----cceEEEeeeccccc
Confidence 3457999999999999999999999 8 89999999875543
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.49 E-value=0.015 Score=53.25 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=31.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|+|||+|..|.++|..|++. | ++|.++.++++
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~-G-----~~v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 3699999999999999999999 8 99999998764
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.025 Score=46.18 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=33.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
+.||+|||+|..|.-+|..|+.. | .+|+++.|.+.-+
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~-G-----~~Vtlv~~~~~~l 58 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSAL-G-----SKTSLMIRHDKVL 58 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSSC
T ss_pred CCEEEEEcCCccHHHHHHHHhcC-C-----cEEEEEeeccccc
Confidence 56999999999999999999998 8 9999999987544
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.31 E-value=0.025 Score=49.12 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=29.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|||+|||+|..|.-+|..|.+. + ++.+|+++.|+.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~-~---~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNL-H---PDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-C---TTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhc-C---CCCeEEEEeCCC
Confidence 8999999999999999999886 4 126899998765
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.28 E-value=0.019 Score=54.12 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=31.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.++||+|||||.-|.++|..|++. |. .++|+++.++.+
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~-~~---~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAE-KA---FDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTT-TC---CSEEEEECSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHh-CC---CCCEEEEECCCC
Confidence 356899999999999999999876 52 168999999864
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=94.15 E-value=0.12 Score=44.34 Aligned_cols=48 Identities=19% Similarity=0.077 Sum_probs=38.6
Q ss_pred hhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 28 RLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 28 ~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
-+|-+.|-.+..-+. ++++|+|.|-.|..+|..+..- | ..|+++.+++
T Consensus 9 ~~d~i~r~t~~~laG-k~vvV~GYG~vGrG~A~~~rg~-G-----a~V~V~E~DP 56 (163)
T d1v8ba1 9 LPDGLMRATDFLISG-KIVVICGYGDVGKGCASSMKGL-G-----ARVYITEIDP 56 (163)
T ss_dssp HHHHHHHHHCCCCTT-SEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSCH
T ss_pred HHHHHHHHhCceecC-CEEEEecccccchhHHHHHHhC-C-----CEEEEEecCc
Confidence 356666666543322 5899999999999999999988 7 8999999987
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.81 E-value=0.025 Score=48.45 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=29.8
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
-|.|||+|.-|.+.|..|+++ | ++|.++.++.
T Consensus 7 DviViGaG~~Gl~~A~~La~~-G-----~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVD-G-----KKVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CCEEEEcCCC
Confidence 489999999999999999999 8 8999999875
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.74 E-value=0.036 Score=45.02 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
-+.+++|||+|.+|.=+|..|++. | .+|+++.|++..+.
T Consensus 24 ~p~~~viiG~G~iglE~A~~~~~~-G-----~~Vtvi~~~~~~l~ 62 (123)
T d1dxla2 24 IPKKLVVIGAGYIGLEMGSVWGRI-G-----SEVTVVEFASEIVP 62 (123)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHH-T-----CEEEEECSSSSSST
T ss_pred cCCeEEEEccchHHHHHHHHHHhc-C-----CeEEEEEEccccCc
Confidence 457999999999999999999999 8 99999999876543
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=93.66 E-value=0.024 Score=52.17 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=29.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+|.|||+|.+|.+.|..|++. |+ ++|++++++.
T Consensus 3 dViIIGaGi~G~s~A~~La~~-G~----~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTR-GW----NNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHT-TC----CCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHc-CC----CcEEEEeCCC
Confidence 799999999999999999998 72 4799998874
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.51 E-value=0.084 Score=45.96 Aligned_cols=31 Identities=10% Similarity=0.059 Sum_probs=24.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEE
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW 78 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~ 78 (461)
|.||+|.|.|.+|..+++.+.++ . +.+|..+
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~-~----dievVaI 31 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQ-P----DMKLVGV 31 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-T----TEEEEEE
T ss_pred CeEEEEECCCHHHHHHHHHHHhC-C----CCEEEEE
Confidence 45899999999999999999876 3 2555544
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.46 E-value=0.037 Score=48.93 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.||+|||+|.-|.+.|..|+++ +. +++|+++++.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~-~~---~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKH-HS---RAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CS---SCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhc-CC---CCeEEEEeCCCC
Confidence 4899999999999999999876 31 279999988753
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.18 Score=42.57 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=31.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
-+|.|+|+|.+|...+..+... |. .+|.++++++++++.
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~-G~----~~Vi~~d~~~~rl~~ 66 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAM-GA----AQVVVTDLSATRLSK 66 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TC----SEEEEEESCHHHHHH
T ss_pred CEEEEECCCccHHHHHHHHHHc-CC----ceEEeccCCHHHHHH
Confidence 4799999999999888777666 71 379999999876653
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=93.38 E-value=0.064 Score=42.82 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=33.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
..+|+|||+|.+|.=+|..|+.. | .+|+++.|.+...
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~-g-----~~vt~i~~~~~~l 58 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNAT-G-----RRTVMLVRTEPLK 58 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCTTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-c-----hhheEeeccchhh
Confidence 47999999999999999999988 7 8999999987543
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.27 E-value=0.044 Score=54.34 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=32.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (461)
+||.|||+|.+|+.++..|+.. |. .+++++|.+.=....+
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~-Gv----g~i~lvD~D~Ve~sNL 77 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALS-GF----RQIHVIDMDTIDVSNL 77 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTT-TC----CCEEEECCCBCCGGGG
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CC----CeEEEEECCCcchhhh
Confidence 5899999999999999999999 83 5899999875333333
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.23 E-value=0.029 Score=52.37 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|..|.|||||.-|.++|..|++. | ++|+++.++.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~-g-----~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKL-N-----KKVLVIEKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGG-T-----CCEEEECSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence 35799999999999999999998 8 8999998875
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.22 E-value=0.049 Score=48.57 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=32.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
...||+|||+|.-|.+.|..|++. | ++|+++.++.+
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~-G-----~~v~l~E~~~~ 83 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMES-G-----YTVHLTDTAEK 83 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSS
T ss_pred CCceEEEEcccHHHHHHHHHHHHh-c-----cceeeEeeccc
Confidence 457999999999999999999999 8 99999988764
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=93.14 E-value=0.065 Score=43.76 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=34.9
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
..+.+++|||+|.+|.=+|..|++. | .+|+++.+.+..+.
T Consensus 24 ~~p~~vvIiGgG~IG~E~A~~~~~~-G-----~~Vtive~~~~il~ 63 (125)
T d1ojta2 24 EVPGKLLIIGGGIIGLEMGTVYSTL-G-----SRLDVVEMMDGLMQ 63 (125)
T ss_dssp CCCSEEEEESCSHHHHHHHHHHHHH-T-----CEEEEECSSSSSST
T ss_pred ccCCeEEEECCCHHHHHHHHHhhcC-C-----CEEEEEEeeccccc
Confidence 3457999999999999999999999 8 99999999875543
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.76 E-value=0.056 Score=44.87 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+||.|||+|..|..+|..|.+. + ++.+|+++++++.
T Consensus 3 krivIvGgG~~G~e~A~~l~~~-~---~~~~Vtlie~~~~ 38 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLA-D---PSIEVTLIEPNTD 38 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-C---TTSEEEEECSCSC
T ss_pred CcEEEECccHHHHHHHHHHHHc-C---CCCcEEEEECCCc
Confidence 4899999999999999999988 5 1258899987763
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.74 E-value=0.042 Score=49.78 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=29.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
-|.|||+|..|++.|..|+++ | .+|.++++..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~-G-----~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQ-G-----VKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 489999999999999999999 8 8999998864
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.54 E-value=0.054 Score=46.72 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=29.5
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEE--EecCchh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRI--WRRPGRS 84 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l--~~r~~~~ 84 (461)
++++|.|.|+ |.+|++++..|.++ | ++|.+ ..|+++.
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~-g-----~~v~v~~~~R~~~~ 41 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEG-S-----DKFVAKGLVRSAQG 41 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHT-T-----TTCEEEEEESCHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC-C-----CcEEEEEEcCCHHH
Confidence 5789999995 99999999999998 7 66544 4566543
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.36 E-value=0.15 Score=51.61 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=41.5
Q ss_pred HHhhHHHHHhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|+|.|.=-|+.|...-. ..||+|||+|+.|+-++..|+.. |. ..++++|.+.
T Consensus 5 e~rYdRQlrlwG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~-GV----g~itivD~d~ 59 (529)
T d1yova1 5 EQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLP-GI----GSFTIIDGNQ 59 (529)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTT-TC----SEEEEECCSB
T ss_pred hhhhhHHHHhhhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHh-cC----CEEEEEcCCc
Confidence 67788777777654422 26899999999999999999998 82 5899998764
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.076 Score=48.13 Aligned_cols=37 Identities=8% Similarity=0.105 Sum_probs=30.8
Q ss_pred eEEEE-C-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 45 RIVGV-G-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 45 kI~II-G-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
|+++| | ++.+|.++|..|++. | ++|.+.+|+++.++.
T Consensus 7 K~alITGas~GIG~aia~~la~~-G-----~~Vi~~~r~~~~l~~ 45 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFARE-G-----AKVIATDINESKLQE 45 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEeCCHHHHHH
Confidence 45555 4 699999999999999 8 999999999876654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.30 E-value=0.095 Score=42.05 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=30.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..||+|+|+|..|.-+|....+- | ++|.+++.+++
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~l-G-----~~v~v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRL-G-----VEVIAVDRYAD 45 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTT-T-----CEEEEEESSTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHC-C-----CEEEEEcCCCC
Confidence 46899999999999999987776 7 89999998864
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=92.20 E-value=0.29 Score=43.19 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=37.3
Q ss_pred hcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 36 MGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 36 ~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.|+.+-+-++|+|-|.|++|..+|..|.+. | ..|++++.+.+.++
T Consensus 20 ~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~-G-----akvvv~d~d~~~~~ 64 (201)
T d1c1da1 20 RGLGSLDGLTVLVQGLGAVGGSLASLAAEA-G-----AQLLVADTDTERVA 64 (201)
T ss_dssp TTCCCSTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHH
T ss_pred hCCCCCCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEecchHHHHH
Confidence 355555567999999999999999999999 8 89999988875443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.12 E-value=0.14 Score=43.62 Aligned_cols=38 Identities=21% Similarity=0.112 Sum_probs=29.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.+|.|+|+|.+|.+.+..+... |. ..|.+.++++++++
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~-g~----~~v~~~~~~~~k~~ 67 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVC-GA----SIIIAVDIVESRLE 67 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHH-TC----SEEEEEESCHHHHH
T ss_pred CEEEEeCCCHHHhhhhhccccc-cc----ceeeeeccHHHHHH
Confidence 5799999999999888877666 71 45667777776554
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.87 E-value=0.12 Score=41.82 Aligned_cols=35 Identities=11% Similarity=0.024 Sum_probs=28.6
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
-|.|+|.|.+|..++..|. | ++|.+++.+++.++.
T Consensus 2 HivI~G~g~~g~~l~~~L~---~-----~~i~vi~~d~~~~~~ 36 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR---G-----SEVFVLAEDENVRKK 36 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC---G-----GGEEEEESCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHc---C-----CCCEEEEcchHHHHH
Confidence 3789999999999999984 3 568888988876654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=91.59 E-value=0.067 Score=47.91 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=33.6
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
-++||.|+|+ |.+|+.++..|.++ | ++|++.+|+....
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~-G-----~~V~~l~R~~~~~ 40 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDL-G-----HPTFLLVRESTAS 40 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCCCCTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-C-----CeEEEEECCCccc
Confidence 3579999997 99999999999999 8 9999999987543
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.58 E-value=0.075 Score=48.38 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=29.0
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|+|||||.-|.+.|..|++. | ++|+++.++.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~-G-----~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDS-G-----LNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCC
Confidence 89999999999999999999 8 8999998765
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=91.53 E-value=0.073 Score=47.16 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=30.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
-|.|||+|.-|.+.|..|++. | ++|.+++++..
T Consensus 4 DViIIGaG~aGl~aA~~la~~-G-----~~V~liEk~~~ 36 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEE-G-----ANVLLLDKGNK 36 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 499999999999999999999 8 99999998764
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.50 E-value=0.32 Score=40.78 Aligned_cols=39 Identities=15% Similarity=0.036 Sum_probs=27.9
Q ss_pred HHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 156 ~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
....+.|++|++.|+........+.. .. +..||.++.-+
T Consensus 59 ~~~~~~d~~f~~~~~~~s~~~~~~~~---~~---~~~VIDlSsdf 97 (154)
T d2gz1a1 59 TAFEGVDIALFSAGSSTSAKYAPYAV---KA---GVVVVDNTSYF 97 (154)
T ss_dssp TTTTTCSEEEECSCHHHHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred hhhhhhhhhhhccCccchhhHHhhhc---cc---cceehhcChhh
Confidence 34678999999999887776665543 33 67888877544
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.44 E-value=0.26 Score=43.55 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=31.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
+||.|.|+ |.+|+.+...|.++ |++ ++|++.+|++..
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~-g~~---~~v~~~~R~~~~ 52 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQ-GLF---SKVTLIGRRKLT 52 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHH-TCC---SEEEEEESSCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-CCC---CEEEEEecChhh
Confidence 58999997 99999999999988 732 589999998643
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=91.27 E-value=0.065 Score=48.11 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=30.8
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.|||.|.|+ |.+|+.++..|.+. | ++|...+|++
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~-g-----~~Vi~~~r~~ 35 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGK-N-----VEVIPTDVQD 35 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTS-S-----EEEEEECTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-C-----CEEEEeechh
Confidence 389999998 99999999999988 8 9999888865
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=91.18 E-value=0.34 Score=43.71 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=40.2
Q ss_pred HHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 32 ~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++..+|..+-.-++|+|-|.|++|..+|..|.+. | ..|...+.+...++
T Consensus 28 ~~~~~g~~~l~g~~v~IqG~GnVG~~~a~~L~~~-G-----akvv~~d~~~~~~~ 76 (230)
T d1leha1 28 AKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTE-G-----AKLVVTDVNKAAVS 76 (230)
T ss_dssp HHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHH
T ss_pred HHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEeecccHHHHH
Confidence 4556666666678999999999999999999999 8 88888887765443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=91.02 E-value=0.063 Score=46.18 Aligned_cols=38 Identities=24% Similarity=0.046 Sum_probs=29.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
-+|.|+|+|.+|...++.+... |. ..|+..++++++.+
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~-Ga----~~Vi~~d~~~~r~~ 66 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLR-GA----GRIIGVGSRPICVE 66 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT-TC----SCEEEECCCHHHHH
T ss_pred CEEEEEcCCcchhhhhhhhhcc-cc----cccccccchhhhHH
Confidence 4799999999998766666655 61 47999999887655
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=90.82 E-value=0.068 Score=48.05 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=31.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
..|.|||+|.-|...|..|++. | ++|.++++++..
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~-G-----~~V~vlEk~~~~ 39 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKL-G-----KSVTVFDNGKKI 39 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCCCC
Confidence 3599999999999999999999 8 899999988653
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=90.78 E-value=0.22 Score=38.24 Aligned_cols=34 Identities=18% Similarity=0.058 Sum_probs=29.8
Q ss_pred CceEEEECccHHHH-HHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~-alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.|||=+||-|-.|. ++|..|.+. | ++|+..|+..
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~-G-----~~VsGSD~~~ 35 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSN-G-----NDVYGSNIEE 35 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEECSSC
T ss_pred CcEEEEEeECHHHHHHHHHHHHhC-C-----CeEEEEeCCC
Confidence 38999999988886 788999988 8 9999999875
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.76 E-value=0.13 Score=48.31 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=31.4
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+.|||.|.|+ |.+|+.++..|.+. | ++|+..++..
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~-g-----~~V~~~d~~~ 49 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHE-G-----HYVIASDWKK 49 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEeCCC
Confidence 5689999995 99999999999999 8 9999998764
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=90.68 E-value=0.088 Score=43.77 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=27.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
||+|||+|..|.-+|..|++. .+|+++.+..
T Consensus 2 rVvIIGgG~~G~e~A~~l~~~-------~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQT-------YEVTVIDKEP 32 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTTT-------SEEEEECSSS
T ss_pred eEEEECCcHHHHHHHHHHHcC-------CCEEEEeccc
Confidence 899999999999999999754 6899998754
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=90.38 E-value=0.089 Score=48.55 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=29.5
Q ss_pred eEEEECccHHHHHHHHHHHH-----hcCCCCCCeeEEEEecCchh
Q 012547 45 RIVGVGAGAWGSVFTAMLQD-----SYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~-----~~G~~~~~~~V~l~~r~~~~ 84 (461)
-|.|||+|..|+++|..|++ . | ++|+++.+++..
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~-G-----~~v~vlEr~~~~ 47 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKP-D-----LKVRIIDKRSTK 47 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHST-T-----CCEEEECSSSSC
T ss_pred CEEEECcCHHHHHHHHHHHhcccccC-C-----CcEEEEcCCCCC
Confidence 49999999999999999974 5 7 899999987643
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=90.23 E-value=0.11 Score=48.39 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..|+|||||.-|.++|..|.+. | .+|+++++.++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~-G-----~~v~i~Ek~~~ 41 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLREL-G-----RSVHVIETAGD 41 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CCEEEEEcCCC
Confidence 5799999999999999999998 8 89999998765
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=90.14 E-value=0.13 Score=48.03 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=29.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
|||.|+|+ |.+|+.++..|.++ | ++|++++|-
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~-g-----~~V~~~d~~ 33 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQN-G-----HDVIILDNL 33 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEECC
Confidence 89999997 99999999999999 8 999999864
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=89.72 E-value=0.15 Score=47.60 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=33.5
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
.+++|+|+|+ |.+|++++..|.+. | ++|++..|+....
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~-G-----~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAV-G-----HHVRAQVHSLKGL 40 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHT-T-----CCEEEEESCSCSH
T ss_pred CCCEEEEECCChHHHHHHHHHHHhC-C-----CeEEEEECCcchh
Confidence 3578999996 99999999999999 8 9999999987643
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=89.63 E-value=0.16 Score=42.45 Aligned_cols=34 Identities=26% Similarity=0.095 Sum_probs=28.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..+|+|||+|..|.-+|..|++. | .+|++..+..
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~-g-----~~v~v~~~~~ 36 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRAS-G-----WEGNIRLVGD 36 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT-T-----CCSEEEEECS
T ss_pred CCCEEEECCcHHHHHHHHHHHHc-C-----CceEEEEecC
Confidence 35899999999999999999998 7 6776665544
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.60 E-value=0.24 Score=41.73 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|.|+|+|.+|...+..+... | .+|+.+++++++++.
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~-G-----~~vi~~~~~~~k~~~ 66 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAM-G-----AETYVISRSSRKRED 66 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-T-----CEEEEEESSSTTHHH
T ss_pred CEEEEECCCCcchhHHHHhhhc-c-----ccccccccchhHHHH
Confidence 5899999999998866655555 7 889999999887664
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=89.53 E-value=0.18 Score=45.68 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=31.9
Q ss_pred ceEEEE-Cc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGV-GA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~II-Ga-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+||++| |+ +.+|.++|..|++. | .+|.+++|+++.+++
T Consensus 1 KKValITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~ 40 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKD-G-----FAVAIADYNDATAKA 40 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 477655 65 67999999999999 8 899999999877664
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=89.49 E-value=0.19 Score=37.82 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=30.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+++|+|+|+|-.|.-++..-.+- | .+|.+++.+++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~L-G-----~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPL-G-----IAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGG-T-----EEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHc-C-----CEEEEEcCCCC
Confidence 36899999999999998887776 8 89999998764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=89.39 E-value=0.22 Score=41.78 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=31.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|.|+|+|.+|...+..+... | .+|+++++++++++.
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~-G-----a~vi~v~~~~~r~~~ 65 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAY-G-----AFVVCTARSPRRLEV 65 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEEcccccchhhHhhHhhh-c-----ccccccchHHHHHHH
Confidence 4899999999999877766655 7 789999999887653
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=89.37 E-value=0.11 Score=43.98 Aligned_cols=33 Identities=27% Similarity=0.165 Sum_probs=26.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
++.+|+|||+|..|.-+|..|.+. | .+|.+..+
T Consensus 2 m~a~VvIIGgG~~G~e~A~~l~~~-g-----~~v~i~~~ 34 (183)
T d1d7ya1 2 LKAPVVVLGAGLASVSFVAELRQA-G-----YQGLITVV 34 (183)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHH-T-----CCSCEEEE
T ss_pred CCCCEEEECccHHHHHHHHHHHhc-C-----CceEEEEE
Confidence 345799999999999999999998 7 55555443
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.63 E-value=0.19 Score=44.79 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=28.3
Q ss_pred ceEEEE-Cc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGV-GA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~II-Ga-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|||.|| |+ +-+|.++|..|++. | ++|.+.+|+++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~-G-----a~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAA-G-----HQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECChH
Confidence 676555 64 77999999999999 8 89999998764
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.51 E-value=0.52 Score=38.34 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=29.9
Q ss_pred ceEEEECccHHHHHHHHHHHHh---cCCCCCCeeEEEEecCchhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDS---YGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~---~G~~~~~~~V~l~~r~~~~~ 85 (461)
.+|+|||+|..|.-+|..|++. .| .+|+++.+.+..+
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g-----~~Vt~i~~~~~~l 77 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALG-----TEVIQLFPEKGNM 77 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHT-----CEEEEECSSSSTT
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcC-----CEEEEecccccCC
Confidence 5899999999999999888642 15 7999998876544
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=88.34 E-value=0.23 Score=39.42 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.+.+|+|||+|..|.=+|..|+.- |. .+.+|+++.+.+..+.
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~~l-~~--~~~~Vtli~~~~~iL~ 60 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFNAY-KP--KDGQVTLCYRGEMILR 60 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHH-CC--TTCEEEEEESSSSSST
T ss_pred cCCeEEEECCcHHHHHHHHHhhhc-cc--CCcEEEEEeccchhhc
Confidence 356999999999999999877654 31 0158999998876553
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=88.29 E-value=0.16 Score=47.45 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=29.2
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.||||.|.|+ |-+|+.++..|.++ | ++|.++.++
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~-g-----~~v~v~~~d 35 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNN-H-----PDVHVTVLD 35 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHH-C-----TTCEEEEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHC-C-----CCeEEEEEe
Confidence 4799999995 99999999999999 8 777777654
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.12 E-value=0.45 Score=40.82 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDS 65 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~ 65 (461)
+++||+|.|.|.+|..+.+.+...
T Consensus 1 M~irIaINGfGRIGR~v~Ral~~~ 24 (172)
T d2czca2 1 MKVKVGVNGYGTIGKRVAYAVTKQ 24 (172)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTC
T ss_pred CcEEEEEECCCHHHHHHHHHHHhC
Confidence 357999999999999999988765
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=88.02 E-value=0.26 Score=44.60 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=31.1
Q ss_pred eEEEE-Cc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 45 RIVGV-GA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 45 kI~II-Ga-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
||++| |+ +-+|.++|..|++. | .+|.+++|+++.+++
T Consensus 3 KValITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~l~~ 41 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKE-G-----LRVFVCARGEEGLRT 41 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 57655 54 67999999999999 8 899999999877664
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.74 E-value=0.33 Score=40.49 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|.|+|+|.+|...+..+... | .+|...++++++++.
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~-G-----~~Vi~~~~~~~~~~~ 66 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAM-G-----LHVAAIDIDDAKLEL 66 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeeccccHHHHHHHHHHc-C-----CccceecchhhHHHh
Confidence 5899999999998866665555 7 899999999876653
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=87.71 E-value=0.37 Score=39.77 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=30.4
Q ss_pred ceEEEE--CccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 44 LRIVGV--GAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 44 mkI~II--GaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
.++.|+ |+|.+|..+|..|++. | ++|+++.+.+...
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~-G-----~~Vtlv~~~~~~~ 77 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATA-G-----HEVTIVSGVHLAN 77 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHT-T-----CEEEEEESSCTTT
T ss_pred CceEEEecCCChHHHHHHHHHHHc-C-----CeEEEEecCCccc
Confidence 455555 9999999999999999 8 9999999986543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=87.41 E-value=0.35 Score=41.08 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (461)
-+|.|+|+|.+|...+..+... | . +|+++++++++.+.
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~-G-----a~~Vi~~~~~~~~~~~ 68 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSL-G-----AENVIVIAGSPNRLKL 68 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----BSEEEEEESCHHHHHH
T ss_pred CEEEEECCCccchhheeccccc-c-----cccccccccccccccc
Confidence 5899999999998777666655 7 5 79999999876653
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.14 E-value=0.55 Score=42.83 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=31.1
Q ss_pred eEEEE-C-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 45 RIVGV-G-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 45 kI~II-G-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
|++|| | +|.+|.++|..|++. | .+|.+.+|+.+.+++
T Consensus 26 K~alITGas~GIG~aiA~~la~~-G-----a~Vii~~r~~~~l~~ 64 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSL-G-----AQCVIASRKMDVLKA 64 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHH
Confidence 55555 4 699999999999999 8 999999999876654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.12 E-value=4.2 Score=36.88 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=49.3
Q ss_pred cCcccccccchhHHh-hHHHHHhhcCCCCCC-ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEER-LDELRRLMGKAEGDP-LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
|-|+....+-+||+- ...++.+..+.+..+ ++|.=||+|.-| ++..+++..| .+|+.++.++++++.
T Consensus 22 S~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~--~a~~~a~~~g-----~~v~gi~ls~~q~~~ 90 (280)
T d2fk8a1 22 SCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGT--TMRRAVERFD-----VNVIGLTLSKNQHAR 90 (280)
T ss_dssp SCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSH--HHHHHHHHHC-----CEEEEEESCHHHHHH
T ss_pred eeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchH--HHHHHHHhCc-----eeEEEecchHHHHHH
Confidence 446666666788875 456788888877664 899999999654 4555665536 799999999987764
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.91 E-value=0.24 Score=42.38 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=29.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..+|+|||+|.-|..-|..+++. | .+|.++++..
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~-g-----~~v~vie~~~ 38 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARA-E-----LKPLLFEGWM 38 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCCEEECCSS
T ss_pred cceEEEECCCHHHHHHHHHHHHc-C-----CcEEEEEeec
Confidence 46899999999999999999998 8 8899987654
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=86.89 E-value=0.55 Score=36.92 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=31.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhc--CCCCCCeeEEEEecCchhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSY--GYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~--G~~~~~~~V~l~~r~~~~~ 85 (461)
.+.+|+|||+|..|.-+|..|+.-. | .+|+++.|.+..+
T Consensus 17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g-----~~Vtli~~~~~il 57 (117)
T d1feca2 17 APKRALCVGGGYISIEFAGIFNAYKARG-----GQVDLAYRGDMIL 57 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTT-----CEEEEEESSSSSS
T ss_pred cCCeEEEECCChHHHHHHHHhHhhcccc-----cccceeccccccc
Confidence 4579999999999999998776531 4 7999999987544
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.85 E-value=0.37 Score=43.60 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=32.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+.+.|.|+ +.+|.++|..|++. | .+|.+++|+++.+++
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~-G-----~~Vv~~~r~~~~l~~ 49 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQ-G-----LKVVGCARTVGNIEE 49 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 45777786 78999999999999 8 899999999877665
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=86.82 E-value=0.27 Score=42.49 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=28.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
-|.|||+|.-|...|..+++. | .+|.++.++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~-G-----~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMY-G-----QKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTT-T-----CCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CEEEEEecc
Confidence 489999999999999999998 8 899999875
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.78 E-value=0.29 Score=42.32 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=29.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
-|+|||+|.-|...|..+++. | .+|.+++.+.
T Consensus 7 DviVIG~GpAGl~aA~~aa~~-G-----~kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQL-G-----FNTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CcEEEEEecC
Confidence 489999999999999999999 8 8999998764
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=86.74 E-value=0.36 Score=43.20 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=32.8
Q ss_pred cCCCCCCceEEEECc-cH--HHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 37 GKAEGDPLRIVGVGA-GA--WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 37 ~~~~~~~mkI~IIGa-Ga--mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
||.++ +++.|.|+ |. +|.++|..|++. | .+|.+.+|+.+..
T Consensus 2 ~~l~g--K~~lItGaag~~GIG~aiA~~la~~-G-----a~Vil~~~~~~~~ 45 (268)
T d2h7ma1 2 GLLDG--KRILVSGIITDSSIAFHIARVAQEQ-G-----AQLVLTGFDRLRL 45 (268)
T ss_dssp CTTTT--CEEEECCCSSTTCHHHHHHHHHHHT-T-----CEEEEEECSCHHH
T ss_pred CCCCC--CEEEEECCCCCCHHHHHHHHHHHHc-C-----CEEEEEeCChHHH
Confidence 34443 46889996 65 999999999999 8 8999999987643
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=86.50 E-value=0.33 Score=41.78 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=29.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
-|.|||+|.-|.+.|..+++. | .+|.++++++
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~-G-----~kV~vie~~~ 36 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQL-G-----FKTTCIEKRG 36 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CcEEEEEecC
Confidence 489999999999999999999 8 8999998764
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=86.15 E-value=0.41 Score=44.20 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=29.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|||.|.|+ |.+|+.++..|.++ | ..+|+..++...
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~-g----~~~V~~ld~~~~ 36 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLRE-D----HYEVYGLDIGSD 36 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHS-T----TCEEEEEESCCG
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C----CCEEEEEeCCCc
Confidence 89999997 99999999999888 7 147988887654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=86.13 E-value=0.39 Score=37.16 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=31.0
Q ss_pred CCceEEEECccHHH-HHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWG-SVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG-~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+.+||-|||.|-.| +++|..|.+. | ++|+.+|+..
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~-G-----~~VsGSD~~~ 42 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNE-G-----YQISGSDIAD 42 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHH-T-----CEEEEEESCC
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhC-C-----CEEEEEeCCC
Confidence 45799999999999 7889999999 8 9999999874
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=85.56 E-value=0.43 Score=44.10 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=32.5
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
+||.|.|+ |.+|+.++..|.++ | ++|..++|+....
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~-g-----~~V~~~~r~~~~~ 45 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTM-G-----ATVKGYSLTAPTV 45 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSCSSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCCCcc
Confidence 79999995 99999999999999 8 9999999987644
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=85.46 E-value=0.32 Score=43.88 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=30.9
Q ss_pred eEE-EECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 45 RIV-GVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 45 kI~-IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
||+ |.|+ +-+|.++|..|++. | .+|.+++|+++.+++
T Consensus 11 KvalITGas~GIG~a~a~~la~~-G-----a~V~~~~r~~~~l~~ 49 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKS-V-----SHVICISRTQKSCDS 49 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTT-S-----SEEEEEESSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHH
Confidence 555 5576 68999999999999 8 899999999877654
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.34 E-value=0.62 Score=37.87 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=31.6
Q ss_pred EecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 150 VVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 150 ~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
..+|+.+++.++|+||++++....+++... +.+ +.+|+-+. |+-
T Consensus 80 ~~~~~~e~i~~~D~ivi~t~h~~f~~l~~~----~~~---~~~I~D~~-~~~ 123 (136)
T d1mv8a3 80 LVSDLDEVVASSDVLVLGNGDELFVDLVNK----TPS---GKKLVDLV-GFM 123 (136)
T ss_dssp BCSCHHHHHHHCSEEEECSCCGGGHHHHHS----CCT---TCEEEESS-SCC
T ss_pred eehhhhhhhhhceEEEEEeCCHHHHHHHHH----hcC---CCEEEECC-CCC
Confidence 457899999999999999998877664322 232 56777654 554
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=85.27 E-value=0.33 Score=43.95 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=29.4
Q ss_pred eEEEECccHHHHHHHHHHHH-hcCCCCCCeeEEEEecCch
Q 012547 45 RIVGVGAGAWGSVFTAMLQD-SYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~-~~G~~~~~~~V~l~~r~~~ 83 (461)
-|+|||+|.-|.+.|..||+ . | ++|.++++.+.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~-G-----~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNP-N-----VQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTST-T-----SCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHcc-C-----CeEEEEecCCC
Confidence 49999999999999999986 5 7 99999998763
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=85.21 E-value=0.31 Score=41.36 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=29.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..+|+|||+|+-|..-|..+++. | .+|+++.+..
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~-g-----~~v~iie~~~ 38 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARA-N-----LQPVLITGME 38 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT-T-----CCCEEECCSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-C-----CceEEEEeec
Confidence 35799999999999999999998 8 8999997654
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=85.20 E-value=0.44 Score=43.11 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=31.0
Q ss_pred eEEEE-C-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 45 RIVGV-G-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 45 kI~II-G-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
|+++| | ++.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 6 KvalVTGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~ 44 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFARE-G-----AKVTITGRHAERLEE 44 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 45555 5 488999999999999 8 899999999887664
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=84.91 E-value=0.36 Score=43.96 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=29.5
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
-|.|||+|.-|.+.|..+++. | .+|.|+.+.+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~-G-----~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDS-G-----AKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 499999999999999999999 8 8999998764
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.84 E-value=0.55 Score=42.06 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=32.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+++.|.|+ +.+|.++|..|++. | ++|.+.+|+++.+++
T Consensus 8 K~~lITGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~l~~ 46 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHAT-G-----ARVVAVSRTQADLDS 46 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHH
Confidence 46788886 78999999999999 8 999999999876654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.83 E-value=0.59 Score=38.64 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.+|.|+|+|.+|...+..+... | .+|.+.++++++.+
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~-g-----~~v~~~~~~~~r~~ 65 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAM-G-----LNVVAVDIGDEKLE 65 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHH
T ss_pred CEEEEeecccchhhhhHHHhcC-C-----CeEeccCCCHHHhh
Confidence 5899999999998876666655 7 78999998887655
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=84.74 E-value=0.36 Score=40.28 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=27.6
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
-|.|||+|..|...|..+++. | .+|.++.++
T Consensus 3 DViIIGgGpaGl~AAi~aar~-G-----~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARK-G-----IRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHc-C-----CeEEEEEEe
Confidence 489999999999999999998 8 889999764
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.74 E-value=0.43 Score=43.16 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=30.8
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+.|-|+ +.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 13 ~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~~~~ 50 (255)
T d1fmca_ 13 CAIITGAGAGIGKEIAITFATA-G-----ASVVVSDINADAANH 50 (255)
T ss_dssp EEEETTTTSHHHHHHHHHHHTT-T-----CEEEEEESCHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 4555565 78999999999999 8 899999999877654
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=84.62 E-value=0.37 Score=44.52 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=28.7
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
-+.|||+|.-|+.+|..|+++ | ++|.+..+.
T Consensus 6 DviIVGsG~aG~v~A~~La~~-G-----~kVlvLEaG 36 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGA-G-----YKVAMFDIG 36 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHhhC-C-----CeEEEEecC
Confidence 489999999999999999999 8 899999875
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=84.55 E-value=0.42 Score=41.36 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=29.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
..|.|||+|..|...|..+++. | .+|.++.++
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~-G-----~~V~liE~~ 37 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQL-G-----IPTVLVEGQ 37 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecC
Confidence 4599999999999999999999 8 899999865
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.45 E-value=0.51 Score=42.46 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=31.0
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.|.|-|+ +.+|.++|..|++. | .+|.+++|+++.++.
T Consensus 9 v~lITGas~GIG~~ia~~la~~-G-----~~V~l~~r~~~~l~~ 46 (244)
T d1yb1a_ 9 IVLITGAGHGIGRLTAYEFAKL-K-----SKLVLWDINKHGLEE 46 (244)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 3445576 56999999999999 8 899999999987765
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=84.33 E-value=0.59 Score=41.59 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=29.6
Q ss_pred ceEEEECccH---HHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 44 LRIVGVGAGA---WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 44 mkI~IIGaGa---mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
++|.|.|++. +|.++|..|++. | ++|.+.+|+++..
T Consensus 6 K~~lITGass~~GIG~aiA~~l~~~-G-----~~V~i~~~~~~~~ 44 (258)
T d1qsga_ 6 KRILVTGVASKLSIAYGIAQAMHRE-G-----AELAFTYQNDKLK 44 (258)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHT-T-----CEEEEEESSTTTH
T ss_pred CEEEEECCCCchhHHHHHHHHHHHc-C-----CEEEEEeCCHHHH
Confidence 4677777654 889999999999 8 9999999986543
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=84.31 E-value=0.39 Score=44.84 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=29.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
-|.|||+|.-|+.+|..|+++ | ++|.+..+..
T Consensus 4 ~VIVVGsG~aG~v~A~rLaea-G-----~~VlvLEaG~ 35 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEA-G-----VQTLMLEMGQ 35 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSC
T ss_pred eEEEeCcCHHHHHHHHHHHHC-c-----CeEEEEecCC
Confidence 378999999999999999999 8 8999998853
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=84.30 E-value=0.7 Score=41.73 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=33.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
-+++.|.|+ +.+|.++|..|++. | .+|.+++|+++.+++
T Consensus 6 gK~alITGas~GIG~aia~~la~~-G-----~~V~i~~r~~~~l~~ 45 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGL-G-----ARVYTCSRNEKELDE 45 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 357889995 88999999999999 8 899999999877664
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=84.30 E-value=0.42 Score=44.74 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=33.3
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 38 ~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
|.++..--+.|||+|.-|+.+|..|+++ | .+|.+..+.
T Consensus 2 ~~~~~~~dvIVVGsG~aG~v~A~rLaea-G-----~~VlvLEaG 39 (370)
T d3coxa1 2 LADGDRVPALVIGSGYGGAVAALRLTQA-G-----IPTQIVEMG 39 (370)
T ss_dssp CCTTCEEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSS
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 4566666799999999999999999999 8 899999875
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=84.19 E-value=0.46 Score=41.42 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=29.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
-|.|||+|.-|...|..+++. | .+|.++.+.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~-G-----~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADE-G-----LKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeccC
Confidence 489999999999999999999 8 8999998765
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=84.17 E-value=0.52 Score=42.71 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=30.6
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+.|.|+ +-+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 8 valITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~ 45 (268)
T d2bgka1 8 VAIITGGAGGIGETTAKLFVRY-G-----AKVVIADIADDHGQK 45 (268)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 4555564 77999999999999 8 899999999876654
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=83.90 E-value=0.55 Score=43.25 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=36.6
Q ss_pred HHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 30 ~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|.+...+-.......-|.|||+|.-|.+.|..+++. | .+|.++.+..
T Consensus 6 ~~~~~~~~~~~~e~~DVvVIGaG~aGl~AA~~aa~~-G-----~~V~vlEK~~ 52 (317)
T d1qo8a2 6 DKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKA-G-----ANVILVDKAP 52 (317)
T ss_dssp HHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSS
T ss_pred hhhhhhccCCCCCccCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 445555544433445699999999999999999999 8 8999998754
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=83.87 E-value=2.8 Score=33.63 Aligned_cols=108 Identities=8% Similarity=-0.013 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhcc-ccchh-HHHHHHhcCCChhhHhhhhcCCCcc-chHHHH
Q 012547 302 TSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLL-KGRNA-WYGQELAKGRLTLDLGDSIKGKGMI-QGISAV 378 (461)
Q Consensus 302 n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~-~sRN~-~~G~~l~~g~~~~~~~~~~~~~~~v-EG~~~~ 378 (461)
|.-.+....++.|...++++.|.+++++.+ .+..+. .|+-. ..+..+.++.- ...-++ -....+
T Consensus 13 N~l~~~~~~~~aEal~la~~~Gid~~~~~~-----~l~~~~~~S~~~~~~~~~~~~~~~--------~~~f~~~l~~KDl 79 (133)
T d1vpda1 13 QVIVALNIAAMSEALTLATKAGVNPDLVYQ-----AIRGGLAGSTVLDAKAPMVMDRNF--------KPGFRIDLHIKDL 79 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHH-----HHTTSTTCCHHHHHHHHHHHTTCC--------CCSSBHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHHhccccchhhhhccchhhhccC--------CCCchHHHHHHHH
Confidence 333344557889999999999999998864 332221 22111 11222222211 111122 345667
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc-------CCCHHHHHHHHHhcccCCC
Q 012547 379 KAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM-------RESPIQAILEALRDETMND 438 (461)
Q Consensus 379 ~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~-------~~~~~~~~~~~l~~~~~~~ 438 (461)
..+.+++++.|+ + +|+.+..++++.. +.+ ..++.+++.+..+.+
T Consensus 80 ~l~~~~a~~~~~--------------~-~p~~~~~~~~~~~a~~~G~~~~D-~s~i~~~~~~~~~~~ 130 (133)
T d1vpda1 80 ANALDTSHGVGA--------------Q-LPLTAAVMEMMQALRADGHGNDD-HSALACYYEKLAKVE 130 (133)
T ss_dssp HHHHHHHHHHTC--------------C-CHHHHHHHHHHHHHHHTTCTTSB-GGGHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCC--------------C-ChHHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhCCC
Confidence 789999999995 6 8999998887742 222 344555555544433
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=83.72 E-value=0.5 Score=41.33 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=28.8
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
.+.|-|+ +.+|.++|..|++. | ++|.+.+|+++..
T Consensus 3 ~alITGas~GIG~aiA~~la~~-G-----a~V~i~~~~~~~~ 38 (241)
T d1uaya_ 3 SALVTGGASGLGRAAALALKAR-G-----YRVVVLDLRREGE 38 (241)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH-T-----CEEEEEESSCCSS
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCcccc
Confidence 3445565 89999999999999 8 9999999987643
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=83.55 E-value=1.3 Score=37.69 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.6
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~ 65 (461)
|.||+|-|.|.+|..+.+.+...
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~ 23 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQ 23 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS
T ss_pred CeEEEEEcCcHHHHHHHHHHHhC
Confidence 46899999999999999988766
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.49 E-value=0.4 Score=39.53 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=29.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.++|.|||+|.+|..-+..|.+. | .+|++++..
T Consensus 13 gkrvLViGgG~va~~ka~~Ll~~-G-----A~VtVvap~ 45 (150)
T d1kyqa1 13 DKRILLIGGGEVGLTRLYKLMPT-G-----CKLTLVSPD 45 (150)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGG-T-----CEEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCC
Confidence 36899999999999999999999 8 899999754
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=83.33 E-value=0.89 Score=40.96 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=32.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+.+.|-|+ +-+|.++|..|++. | .+|.+++|+++.+++
T Consensus 9 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~ 47 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASL-G-----ASVYTCSRNQKELND 47 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 45777787 56999999999999 8 899999999877664
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=83.28 E-value=1.4 Score=37.08 Aligned_cols=39 Identities=13% Similarity=-0.025 Sum_probs=32.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|.|+|+|.+|...++.+... | ...|...++++++++.
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~-G----~~~Vi~~d~~~~kl~~ 67 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAA-G----ASRIIGVGTHKDKFPK 67 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-T----CSEEEEECSCGGGHHH
T ss_pred CEEEEECCCchhHHHHHHHHHc-C----CceeeccCChHHHHHH
Confidence 5799999999999888888777 7 2579999999877664
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=83.27 E-value=0.87 Score=37.97 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=28.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.+|.|+|+|.+|+..++.+... | .++.+.++++++.+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~-G-----a~~i~~~~~~~~~~ 68 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAM-G-----AHVVAFTTSEAKRE 68 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSGGGHH
T ss_pred CEEEEeccchHHHHHHHHhhcc-c-----ccchhhccchhHHH
Confidence 5899999999997766655545 7 78888888876554
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=83.20 E-value=0.73 Score=41.12 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=31.3
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+++.|.|+ +.+|.++|..|+++ | ++|.+.+|+.+.++
T Consensus 6 K~alItGas~GIG~aia~~l~~~-G-----~~V~~~~r~~~~~~ 43 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFARE-G-----ASLVAVDREERLLA 43 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 45677787 56999999999999 8 99999999987654
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.95 E-value=0.57 Score=40.03 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=28.6
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
-|.|||+|..|...|..+++. | .+|.++.+..
T Consensus 5 DviVIG~GpaGl~aA~~aar~-G-----~kV~vIEk~~ 36 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQL-G-----QKVTIVEKGN 36 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CEEEEEecCC
Confidence 388999999999999999998 8 8999998754
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=82.76 E-value=0.76 Score=41.20 Aligned_cols=34 Identities=9% Similarity=-0.036 Sum_probs=29.7
Q ss_pred ceEEEECc-c--HHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGA-G--AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGa-G--amG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+++.|.|+ | -+|.++|..|++. | .+|.+.+|+++
T Consensus 6 K~alITGaag~~GIG~AiA~~la~~-G-----a~V~i~~r~~~ 42 (274)
T d2pd4a1 6 KKGLIVGVANNKSIAYGIAQSCFNQ-G-----ATLAFTYLNES 42 (274)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTT-T-----CEEEEEESSTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHH
Confidence 56888886 5 4999999999999 8 99999999864
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.72 E-value=0.66 Score=41.61 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=31.8
Q ss_pred ceEEEE-Cc-cHHHHHHHHHHHH---hcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGV-GA-GAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~II-Ga-GamG~alA~~La~---~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
-||+|| |+ +-+|.++|..||+ + | ++|.+++|+++.+++
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~-G-----~~Vv~~~r~~~~l~~ 48 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSP-G-----SVMLVSARSESMLRQ 48 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCT-T-----CEEEEEESCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccC-C-----CEEEEEECCHHHHHH
Confidence 478888 65 5799999999996 5 6 899999999887765
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.70 E-value=0.76 Score=41.05 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=32.5
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+++.|.|+ +-+|.++|..|++. | ++|.+.+|+++.+++
T Consensus 6 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~ 44 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHAS-G-----AKVVAVTRTNSDLVS 44 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 56778887 67999999999999 8 999999999876554
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.31 E-value=0.82 Score=42.13 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=36.5
Q ss_pred hhHHHHHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 28 RLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 28 ~~~~~~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
|.+++|...-+ .+++|.|.|+ |.+|+.++..|.+. | ++|..+++.
T Consensus 4 ~~~~~~~~~~~---~~k~iLVTG~tGfIGs~lv~~L~~~-g-----~~V~~~d~~ 49 (341)
T d1sb8a_ 4 RYEELRKELPA---QPKVWLITGVAGFIGSNLLETLLKL-D-----QKVVGLDNF 49 (341)
T ss_dssp HHHHHHHHHHH---SCCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECC
T ss_pred hHHHHHHhCCC---CCCEEEEecCCCHHHHHHHHHHHHC-c-----CEEEEEECC
Confidence 66777775522 4468999996 99999999999999 8 999999863
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=82.16 E-value=0.7 Score=41.31 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=31.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+++.|-|+ +-+|.++|..|++. | .+|.+++|+++.+++
T Consensus 6 K~~lITGas~GIG~aia~~l~~~-G-----~~V~~~~r~~~~l~~ 44 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKE-G-----ARLVACDIEEGPLRE 44 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 45667776 67999999999999 8 899999999876553
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=82.16 E-value=0.66 Score=39.53 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=28.8
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
=|.|||+|.-|...|..+++. | .+|.++++..
T Consensus 5 DviIIGgGpAGl~aA~~aar~-G-----~~V~viE~~~ 36 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQL-G-----LKTALIEKYK 36 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECCB
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeccc
Confidence 389999999999999999999 8 8999998653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.11 E-value=0.39 Score=40.44 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=28.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.+|.|.|+ |.+|.+..+.+... | .+|+..++++++.+
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~-G-----~~vi~~~~~~~~~~ 67 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAY-G-----LKILGTAGTEEGQK 67 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHH
T ss_pred CEEEEEecccccccccccccccc-C-----cccccccccccccc
Confidence 48999996 99998766665555 7 78988888776544
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.10 E-value=0.64 Score=39.86 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=28.1
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+.|||+|..|...|..+++. | .+|.++.++.
T Consensus 6 viIIG~GpaG~~aA~~aar~-G-----~kV~vIEk~~ 36 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAEL-G-----ARAAVVESHK 36 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSC
T ss_pred EEEECCCHHHHHHHHHHHHC-C-----CEEEEEeccC
Confidence 78999999999999999999 8 8999998653
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.96 E-value=0.99 Score=40.41 Aligned_cols=37 Identities=8% Similarity=0.019 Sum_probs=31.0
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+.|-|+ +-+|.++|..|++. | .+|.+.+|+++.++.
T Consensus 8 ~alITGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~~~~ 45 (244)
T d1nffa_ 8 VALVSGGARGMGASHVRAMVAE-G-----AKVVFGDILDEEGKA 45 (244)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 4556686 77999999999999 8 899999999876654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.91 E-value=0.69 Score=41.81 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=33.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+++.|.|+ +-+|.++|..|++. | .+|.+.+|+++.++.
T Consensus 15 K~alITGassGIG~aiA~~la~~-G-----~~Vil~~r~~~~l~~ 53 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKM-G-----AHVVVTARSKETLQK 53 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 46888887 56999999999999 8 899999999887765
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=81.81 E-value=0.75 Score=40.56 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=30.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
-||.|.|+ |.+|.++|..|+++ | ++|.+.+|+++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~-G-----~~V~~~~~~~~ 37 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKN-G-----YTVLNIDLSAN 37 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-T-----EEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCch
Confidence 37899997 89999999999999 8 99999999864
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=81.79 E-value=0.51 Score=43.37 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=29.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.-|.|||+|.-|...|..|++. | .+|.++.+.+
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~-G-----~~V~llEk~~ 56 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDA-G-----AKVILLEKEP 56 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTT-T-----CCEEEECSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 3499999999999999999999 8 8999998764
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.78 E-value=0.52 Score=40.96 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=28.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
-|.|||+|.-|...|..+++. | .+|.++...
T Consensus 5 DviVIG~GpaGl~aA~~aa~~-G-----~kV~viE~~ 35 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKF-D-----KKVMVLDFV 35 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGG-C-----CCEEEECCC
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecc
Confidence 389999999999999999999 8 899999854
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.74 E-value=1.5 Score=37.50 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=28.1
Q ss_pred CCceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.-++|+|||-+. +|..+|..|++. | ..|+++...
T Consensus 38 ~Gk~vvVIGrS~iVGrPLa~lL~~~-g-----atVt~~~~~ 72 (170)
T d1a4ia1 38 AGRHAVVVGRSKIVGAPMHDLLLWN-N-----ATVTTCHSK 72 (170)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred ccceEEEEecCCccchHHHHHHHhc-c-----CceEEEecc
Confidence 337899999865 999999999998 7 888887544
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.73 E-value=0.7 Score=42.35 Aligned_cols=33 Identities=27% Similarity=0.237 Sum_probs=29.4
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
++||.|.|+ |.+|+.++..|.+. | ++|+.+++.
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~-g-----~~V~~~d~~ 34 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMD-G-----HEVTVVDNF 34 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEeCC
Confidence 368999997 99999999999998 8 999999863
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.66 E-value=0.76 Score=41.25 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=30.7
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+.|-|+ +-+|.++|..|++. | .+|.+.+|+.+.+++
T Consensus 5 valITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~ 42 (254)
T d2gdza1 5 VALVTGAAQGIGRAFAEALLLK-G-----AKVALVDWNLEAGVQ 42 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 3455576 77999999999999 8 899999999876654
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.60 E-value=0.53 Score=45.08 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=29.6
Q ss_pred eEEEECccHHHHHHHHHHHH------hcCCCCCCeeEEEEecCch
Q 012547 45 RIVGVGAGAWGSVFTAMLQD------SYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~------~~G~~~~~~~V~l~~r~~~ 83 (461)
-|.|||+|.-|++.|..||+ + | .+|.++.+..+
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~-G-----l~VlllEK~~~ 72 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEK-D-----LRVCLVEKAAH 72 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTC-C-----CCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcC-C-----CEEEEEcCCCC
Confidence 49999999999999999997 5 6 89999998764
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=81.59 E-value=0.9 Score=40.84 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=31.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+.+.|-|+ +-+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 10 K~alITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~ 48 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAA-G-----ANVAVIYRSAADAVE 48 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-T-----EEEEEEESSCTTHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 35666676 66999999999999 8 999999999876654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.54 E-value=0.66 Score=38.97 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=29.0
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.+|.|.|+ |.+|.+.++.+... | .+|...++++++.+
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~-g-----~~vi~~~~~~~~~~ 64 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMI-G-----ARIYTTAGSDAKRE 64 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHH-T-----CEEEEEESSHHHHH
T ss_pred CEEEEECCCCCcccccchhhccc-c-----ccceeeeccccccc
Confidence 57999886 99998877766655 7 88888888876554
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=81.52 E-value=7.8 Score=31.92 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=27.2
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+|+||+|+|+ |++|+..-..+.++. +.++|....-+.
T Consensus 1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~----d~f~v~~lsa~~ 38 (150)
T d1r0ka2 1 QPRTVTVLGATGSIGHSTLDLIERNL----DRYQVIALTANR 38 (150)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTG----GGEEEEEEEESS
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCC----CCcEEEEEEeCC
Confidence 3679999997 999999888887651 126777665544
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.10 E-value=0.69 Score=43.58 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=28.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~ 79 (461)
|||.|.|+ |.+|+.++..|.+. | ++|+.+|
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~-g-----~~V~~iD 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKK-N-----YEVCIVD 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEe
Confidence 79999997 99999999999999 8 9999986
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.96 E-value=0.95 Score=40.67 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=32.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+.+.|-|+ +.+|.++|..|++. | .+|.+++|+++.++.
T Consensus 7 K~alITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~ 45 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNS-G-----ARVVICDKDESGGRA 45 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 45777786 88999999999999 8 899999999876654
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.73 E-value=0.89 Score=34.85 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=28.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|||.|||.|.=-.+||..|+++ . ++|+++--+.
T Consensus 1 MkVLviGsGgREHAia~~l~~s-~-----~~v~~~pGN~ 33 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQ-G-----YEVHFYPGNA 33 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHT-T-----CEEEEEECCT
T ss_pred CEEEEECCCHHHHHHHHHHhcC-C-----CeEEEecCCc
Confidence 8999999999999999999988 5 7887774443
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=80.62 E-value=3.5 Score=34.04 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=26.6
Q ss_pred ceEEEECc--cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGA--GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGa--GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||++||= .++-.++...+++- | .++++.....
T Consensus 4 ~ki~~vGD~~nnV~~Sli~~~~~~-g-----~~i~~~~P~~ 38 (161)
T d1vlva2 4 VKVVFMGDTRNNVATSLMIACAKM-G-----MNFVACGPEE 38 (161)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHT-T-----CEEEEESCGG
T ss_pred CEEEEEcCCccHHHHHHHHHHHHc-C-----CEEEEecchh
Confidence 68999993 57888888888887 7 8888887654
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=80.33 E-value=1 Score=40.98 Aligned_cols=38 Identities=8% Similarity=0.231 Sum_probs=32.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+.+.|-|+ +.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 6 K~alITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~l~~ 44 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAE-G-----AKVAVLDKSAERLAE 44 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 45777786 78999999999999 8 999999999876654
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.28 E-value=0.98 Score=40.88 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=32.3
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+.+.|.|+ +.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 6 K~alVTGas~GIG~aia~~la~~-G-----a~V~l~~r~~~~l~~ 44 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQE-G-----ANVTITGRSSERLEE 44 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 45667776 77999999999999 8 899999999887664
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.25 E-value=0.82 Score=42.14 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=28.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
.||.|.|+ |.+|++++..|.++ | ++|+.+++
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~-g-----~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEA-G-----YLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHT-T-----CCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEEC
Confidence 58999996 99999999999998 8 89999875
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=80.12 E-value=1 Score=40.48 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=32.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+.+.|-|+ +.+|.++|..|++. | .+|.+++|+++.+++
T Consensus 6 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~ 44 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEE-G-----TAIALLDMNREALEK 44 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 35667787 66999999999999 8 899999999877654
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=80.09 E-value=0.64 Score=43.82 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=28.8
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
-+.|||+|.-|+.+|..|+++ | .+|.+..+..
T Consensus 4 D~IIVGsG~aG~v~A~rLae~-g-----~~VlvLEaG~ 35 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEA-G-----KKVLLLERGG 35 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHhhC-C-----CeEEEEEccC
Confidence 378999999999999999999 8 8999998764
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=80.06 E-value=1.2 Score=37.93 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=27.2
Q ss_pred CCceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 42 DPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 42 ~~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
.-++|+|||-+. +|..+|..|.+. | ..|+++..
T Consensus 36 ~GK~v~VIGrS~~VG~Pla~lL~~~-g-----atVt~~h~ 69 (166)
T d1b0aa1 36 FGLNAVVIGASNIVGRPMSMELLLA-G-----CTTTVTHR 69 (166)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTT-T-----CEEEEECS
T ss_pred ccceEEEEeccccccHHHHHHHHHh-h-----cccccccc
Confidence 347899999866 999999999988 7 88887743
|