Citrus Sinensis ID: 012588

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460
MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRELDLNGEAVPDDDDDGVPAAALHENNEVTMTNDDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEIIRLPMYADRIRNDSKAHLHTSSARRR
cEEEHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHccccccccccccccEEEccHHHHHHHHcccEEEEEccccEEEEEEEEccEEEEEEccccEEEEccccccccccccccccccccEEccEEEEEEccccccccEEEEEEEEEEEEcccccccccHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHHHccccccccccEEEEcccccccccccccEEEEEccccEEEEEEEEEEcccccEEEEEEccEEEEEEccEEEEEcccccccccEEEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHcccccccccccccccc
cHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccEEEEEEcccEEEEEEEEcccEEEEEccccEEEEEcccccccccccccHHcccccEEccEEEEEcccccccccEEEEEEEEEEEcccccccccHHHHHHHHHHHHHcHHHHHHHcccccccccccccccccEEEEccccHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccEEcccccccccEEEEEEEEccccccccccccccEEEcccccccccccccccccccEEEEEEccccccEEEEEEEccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHcHHHHHHccccHHccc
MIVHFLMRSQSMSVAQAIKKFAevrppgiyknEYIEALYTFYhekrldstpcpstpewkreldlngeavpdddddgvpaaalhennevtmtnddvlgdeipndqqDAFRHFCYQTLklnfggrgnmqfpgshpvslnsdnlQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFnfrrvqmrfpcrnsneglgekthhftlldgemiidklpdsRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVieprnyerhniyqsrnpyyrydlepfrvrrkDFWLLSTVNKLLKEFIPklshdadglvfqgwddpyvprtheglLKWKYARMNSVDFlfevtdddRQLLYVFERGKkklmegssveftdrepsfysgkiiectwdpdvqlwkcmrirtdkstpndiNTYRKVMRSIRDNITEEVLLNEIQEIIrlpmyadrirndskahlhtssarrr
MIVHFLMRSQSMSVAQAIKKfaevrppgiyKNEYIEALYTFYHEKRLDSTPCPSTPEWKRELDLNGEAVPDDDDDGVPAAALHENNEVTMTNDDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFpcrnsneglgekthhftlldgemiidklpdsRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEvieprnyerhniyqsrnpyyryDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLfevtdddrQLLYVFErgkkklmegssveftdrepsfysgkiiectwdpdvQLWKCMrirtdkstpndintyrKVMRSIRDNITEEVLLNEIQEIIRlpmyadrirndskahlhtssarrr
MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRELDLNGEavpdddddgvpaaaLHENNEVTMTNDDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEIIRLPMYADRIRNDSKAHLHTSSARRR
*************VAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRL*********************************************************QDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLM****VEFTDREPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEIIRLPMYADRI****************
MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKR***TPCPSTPEWKREL***********************************DEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEI**************************
MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRELDLNGEAVPDDDDDGVPAAALHENNEVTMTNDDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEIIRLPMYADRIRNDS************
MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRE*************************EVTMTNDDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEIIRLPMYADRIR***************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRELDLNGEAVPDDDDDGVPAAALHENNEVTMTNDDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEIIRLPMYADRIRNDSKAHLHTSSARRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query460 2.2.26 [Sep-21-2011]
O55236597 mRNA-capping enzyme OS=Mu yes no 0.871 0.671 0.328 9e-46
Q17607623 mRNA-capping enzyme OS=Ca yes no 0.891 0.658 0.290 3e-43
O60942597 mRNA-capping enzyme OS=Ho yes no 0.832 0.641 0.317 2e-42
Q6NY98598 mRNA-capping enzyme OS=Da yes no 0.604 0.464 0.380 7e-37
P40997402 mRNA-capping enzyme subun yes no 0.689 0.788 0.317 4e-35
Q6FQ31449 mRNA-capping enzyme subun yes no 0.663 0.679 0.303 8e-31
Q7SB53402 mRNA-capping enzyme subun N/A no 0.643 0.736 0.277 3e-30
Q6CWR0466 mRNA-capping enzyme subun yes no 0.697 0.688 0.287 3e-28
Q01159459 mRNA-capping enzyme subun yes no 0.645 0.647 0.294 2e-27
P78587449 mRNA-capping enzyme subun N/A no 0.669 0.685 0.288 3e-27
>sp|O55236|MCE1_MOUSE mRNA-capping enzyme OS=Mus musculus GN=Rngtt PE=1 SV=1 Back     alignment and function desciption
 Score =  184 bits (468), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 223/457 (48%), Gaps = 56/457 (12%)

Query: 1   MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKR 60
           +I  FL+     S+  A+  FA+ RPPGIYK +Y++ L+  Y +   ++ P P  P+W  
Sbjct: 136 LICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDIE-EAPPPPVLPDWCF 194

Query: 61  ELDLNGEAVPDDDDDGVPAAALHEN---------NEVTMTNDDVLGDEIPNDQQ--DAFR 109
           E +   +   D   D  P ++   +           + +    V G      Q      +
Sbjct: 195 EDEDEEDEDEDGKKDSEPGSSASFSKRRKERLKLGAIFLEGITVKGVTQVTTQPKLGEVQ 254

Query: 110 HFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLI-TIDG 168
             C+Q     F G     FPG+ PVS++  N++LL Q+ Y  +WKADGTRYMMLI   + 
Sbjct: 255 QKCHQ-----FCGWEGSGFPGAQPVSMDKQNIRLLEQKPYKVSWKADGTRYMMLIDGTNE 309

Query: 169 CYLIDRCFN-FRRVQMRFPCRNSNEGLGEKTHHF--TLLDGEMIIDKLPDSRRQERRYLI 225
            ++IDR  + F    + FP R       +   H   TLLDGEMIIDK+  + +   RYLI
Sbjct: 310 VFMIDRDNSVFHVSNLEFPFRK------DLRMHLSNTLLDGEMIIDKV--NGQAVPRYLI 361

Query: 226 YDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDF 285
           YD++  N   V +  F  R + +E+E+I PR+ +       +        EPF VR K F
Sbjct: 362 YDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKT------QEPFSVRPKQF 415

Query: 286 WLLSTVNKLLK-EFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVT 344
           + ++   KLL+  F  ++SH+ DGL+FQ     Y P   + +LKWK   +NSVDF  ++T
Sbjct: 416 FDINISRKLLEGNFAKEVSHEMDGLIFQPIGK-YKPGRCDDILKWKPPSLNSVDFRLKIT 474

Query: 345 --------DDDRQLLYV--FERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWK 394
                     +  LLYV  +ER   ++          +E   Y  KIIEC ++ +   W 
Sbjct: 475 RMGGEGLLPQNVGLLYVGGYERPFAQIK-------VTKELKQYDNKIIECKFENNS--WV 525

Query: 395 CMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEI 431
            MR R DKS PN  NT   V  SI + +T+E+L   I
Sbjct: 526 FMRQRIDKSFPNAYNTAMAVCNSISNPVTKEMLFEFI 562
Bifunctional mRNA-capping enzyme exhibiting RNA 5'-triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 0
>sp|Q17607|MCE1_CAEEL mRNA-capping enzyme OS=Caenorhabditis elegans GN=cel-1 PE=1 SV=2 Back     alignment and function description
>sp|O60942|MCE1_HUMAN mRNA-capping enzyme OS=Homo sapiens GN=RNGTT PE=1 SV=1 Back     alignment and function description
>sp|Q6NY98|MCE1_DANRE mRNA-capping enzyme OS=Danio rerio GN=rngtt PE=2 SV=1 Back     alignment and function description
>sp|P40997|MCE1_SCHPO mRNA-capping enzyme subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ceg1 PE=1 SV=1 Back     alignment and function description
>sp|Q6FQ31|MCE1_CANGA mRNA-capping enzyme subunit alpha OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CEG1 PE=3 SV=1 Back     alignment and function description
>sp|Q7SB53|MCE1_NEUCR mRNA-capping enzyme subunit alpha OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU06260 PE=3 SV=1 Back     alignment and function description
>sp|Q6CWR0|MCE1_KLULA mRNA-capping enzyme subunit alpha OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CEG1 PE=3 SV=1 Back     alignment and function description
>sp|Q01159|MCE1_YEAST mRNA-capping enzyme subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CEG1 PE=1 SV=2 Back     alignment and function description
>sp|P78587|MCE1_CANAX mRNA-capping enzyme subunit alpha OS=Candida albicans GN=CGT1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query460
357468629 579 mRNA-capping enzyme [Medicago truncatula 0.997 0.792 0.789 0.0
357468627 684 mRNA-capping enzyme [Medicago truncatula 0.997 0.671 0.789 0.0
356504293 684 PREDICTED: mRNA-capping enzyme-like [Gly 1.0 0.672 0.806 0.0
356496154 683 PREDICTED: mRNA-capping enzyme-like [Gly 0.997 0.672 0.808 0.0
356568041 681 PREDICTED: mRNA-capping enzyme-like [Gly 0.993 0.671 0.783 0.0
225440606 677 PREDICTED: mRNA-capping enzyme [Vitis vi 1.0 0.679 0.766 0.0
356520983 678 PREDICTED: mRNA-capping enzyme-like [Gly 0.991 0.672 0.778 0.0
449460315 682 PREDICTED: mRNA-capping enzyme-like [Cuc 1.0 0.674 0.772 0.0
224087675 686 predicted protein [Populus trichocarpa] 1.0 0.670 0.769 0.0
42572335 672 mRNA capping enzyme-like protein [Arabid 0.976 0.668 0.7 0.0
>gi|357468629|ref|XP_003604599.1| mRNA-capping enzyme [Medicago truncatula] gi|355505654|gb|AES86796.1| mRNA-capping enzyme [Medicago truncatula] Back     alignment and taxonomy information
 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/465 (78%), Positives = 409/465 (87%), Gaps = 6/465 (1%)

Query: 1   MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKR 60
           MI+H+LMR+ SMSV QAIK F++ RPPGIYK +YI+ALYTFYHEK+ +   CP TPEWKR
Sbjct: 115 MIIHYLMRAMSMSVTQAIKIFSDARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKR 174

Query: 61  --ELDLNGEAVPDDDDDGVPAAALHENNEVT--MTNDDVLGDEIPNDQQDAFRHFCYQTL 116
             ELDLNGEAVPD+DDDGVP   L EN+E +  MTNDDVLGDEIP DQQ+AFR FCYQTL
Sbjct: 175 SSELDLNGEAVPDEDDDGVPGPDLQENHETSSQMTNDDVLGDEIPVDQQNAFRQFCYQTL 234

Query: 117 KLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCF 176
           +L  G RG+ QFPGSHPVSLN DNLQLLRQRYYYATWKADGTRYMMLIT+DGCYLIDR F
Sbjct: 235 RLGVGARGHTQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRNF 294

Query: 177 NFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASV 236
           N RRVQMRFPCR++NEGLGEKTHHFTLLDGEM+ID LPDS +QERRYLIYD+MAIN  SV
Sbjct: 295 NCRRVQMRFPCRSTNEGLGEKTHHFTLLDGEMVIDTLPDSNKQERRYLIYDLMAINHVSV 354

Query: 237 IERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLK 296
           IERPFYERWKMLEKEVIEPRN+ERH IYQSRNPYYRYDLEPFRVRRKDFWLLSTV KLLK
Sbjct: 355 IERPFYERWKMLEKEVIEPRNHERHQIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLK 414

Query: 297 EFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFER 356
           EFI KLSH+ADGL+FQGWDDPYVPRTHEGLLKWKYA +NSVDFLFEV + DR+LL+V+ER
Sbjct: 415 EFIKKLSHEADGLIFQGWDDPYVPRTHEGLLKWKYANLNSVDFLFEV-EGDRELLFVYER 473

Query: 357 GKKKLMEGSSVEFTD-REPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVM 415
           GKKKL++G+ V F D  EPSFYSGKIIEC+WD D   W  +RIRTDKSTPN+ NTYRKVM
Sbjct: 474 GKKKLLDGNKVAFKDGTEPSFYSGKIIECSWDFDNLEWIFLRIRTDKSTPNEFNTYRKVM 533

Query: 416 RSIRDNITEEVLLNEIQEIIRLPMYADRIRNDSKAHLHTSSARRR 460
           RSI+DNITEE LLNEI EIIRLPMYADRI++DSKA+    +A++R
Sbjct: 534 RSIKDNITEEDLLNEINEIIRLPMYADRIKSDSKANQIAHAAKQR 578

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357468627|ref|XP_003604598.1| mRNA-capping enzyme [Medicago truncatula] gi|355505653|gb|AES86795.1| mRNA-capping enzyme [Medicago truncatula] Back     alignment and taxonomy information
>gi|356504293|ref|XP_003520931.1| PREDICTED: mRNA-capping enzyme-like [Glycine max] Back     alignment and taxonomy information
>gi|356496154|ref|XP_003516935.1| PREDICTED: mRNA-capping enzyme-like [Glycine max] Back     alignment and taxonomy information
>gi|356568041|ref|XP_003552222.1| PREDICTED: mRNA-capping enzyme-like [Glycine max] Back     alignment and taxonomy information
>gi|225440606|ref|XP_002277969.1| PREDICTED: mRNA-capping enzyme [Vitis vinifera] gi|297740251|emb|CBI30433.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356520983|ref|XP_003529138.1| PREDICTED: mRNA-capping enzyme-like [Glycine max] Back     alignment and taxonomy information
>gi|449460315|ref|XP_004147891.1| PREDICTED: mRNA-capping enzyme-like [Cucumis sativus] gi|449506444|ref|XP_004162751.1| PREDICTED: mRNA-capping enzyme-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224087675|ref|XP_002308205.1| predicted protein [Populus trichocarpa] gi|222854181|gb|EEE91728.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42572335|ref|NP_974263.1| mRNA capping enzyme-like protein [Arabidopsis thaliana] gi|332641202|gb|AEE74723.1| mRNA capping enzyme-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query460
TAIR|locus:2095284672 AT3G09100 [Arabidopsis thalian 0.967 0.662 0.686 1.7e-171
TAIR|locus:2150154657 AT5G01290 [Arabidopsis thalian 0.965 0.675 0.664 1.3e-162
TAIR|locus:2147575625 AT5G28210 [Arabidopsis thalian 0.967 0.712 0.523 8e-124
UNIPROTKB|E2R9G2597 RNGTT "Uncharacterized protein 0.878 0.676 0.330 1.8e-46
UNIPROTKB|J9NTU7568 RNGTT "Uncharacterized protein 0.878 0.711 0.330 1.8e-46
RGD|1311410597 Rngtt "RNA guanylyltransferase 0.878 0.676 0.330 4.8e-46
UNIPROTKB|Q2KHX7595 RNGTT "RNA guanylyltransferase 0.878 0.678 0.328 6.2e-46
UNIPROTKB|O60942597 RNGTT "mRNA-capping enzyme" [H 0.878 0.676 0.328 7.9e-46
MGI|MGI:1329041597 Rngtt "RNA guanylyltransferase 0.878 0.676 0.328 7.9e-46
ZFIN|ZDB-GENE-040426-2087598 rngtt "RNA guanylyltransferase 0.876 0.673 0.327 1.3e-45
TAIR|locus:2095284 AT3G09100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1667 (591.9 bits), Expect = 1.7e-171, P = 1.7e-171
 Identities = 316/460 (68%), Positives = 369/460 (80%)

Query:     1 MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKR 60
             MIVH+LMRS  M+V QA+K F++ RPPGIYK +YI+ALY+FYHE + +S  CPSTPEWKR
Sbjct:   214 MIVHYLMRSGPMNVTQALKIFSDARPPGIYKPDYIDALYSFYHEIKPESVICPSTPEWKR 273

Query:    61 --ELDLNGEXXXXXXXXXXXXXX----LHENN---EVTMTNDDVLGDEIPNDQQDAFRHF 111
               ELDLNGE                    E +   +V M+NDDVLGDEIP DQ++ +R F
Sbjct:   274 STELDLNGEALPDDEDDDGGPAGPVQGFQEESHQVDVKMSNDDVLGDEIPPDQEEGYRQF 333

Query:   112 CYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYL 171
              Y+ L LN GGRG  QFPGSHPVSLN +NLQLLRQRYYYATWKADGTRYMML+T DGCY+
Sbjct:   334 FYRMLSLNIGGRGCSQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLLTTDGCYI 393

Query:   172 IDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAI 231
             +DR F FRRVQMRFP R+  EG+ +K HHFTLLDGEMIID LPD ++QERRYLIYDM+AI
Sbjct:   394 VDRSFRFRRVQMRFPFRHPTEGISDKVHHFTLLDGEMIIDTLPDKQKQERRYLIYDMVAI 453

Query:   232 NQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTV 291
             N  SV+ERPFYERWKMLEKEVI+PRN+E+     +R+  YRYDLEPFRVRRKDFWLLS V
Sbjct:   454 NGQSVVERPFYERWKMLEKEVIDPRNHEK-----ARSHIYRYDLEPFRVRRKDFWLLSAV 508

Query:   292 NKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLL 351
              K+LK FIP LSH+ADGL+FQGWDDPYVPRTHEGLLKWKY  MNSVDFL+E  +  R +L
Sbjct:   509 EKVLKGFIPSLSHEADGLIFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLYEQDESGRGML 568

Query:   352 YVFERGKKKLMEGSSVEFTD-REPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINT 410
              +FERGKKK M+G+SV F D  +P+ YSGKI+EC+WD D ++W  MR+R DKSTPNDINT
Sbjct:   569 SLFERGKKKHMDGNSVVFRDDSDPAEYSGKIVECSWDQDEKVWVSMRVRVDKSTPNDINT 628

Query:   411 YRKVMRSIRDNITEEVLLNEIQEIIRLPMYADRIRNDSKA 450
             +RKVMRSI+DNITEEVLL EI+EIIRLPMYADRI+ DSKA
Sbjct:   629 FRKVMRSIKDNITEEVLLQEIREIIRLPMYADRIQMDSKA 668
GO:0003910 "DNA ligase (ATP) activity" evidence=IEA
GO:0004484 "mRNA guanylyltransferase activity" evidence=IEA;ISS
GO:0004651 "polynucleotide 5'-phosphatase activity" evidence=IEA
GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006281 "DNA repair" evidence=IEA
GO:0006310 "DNA recombination" evidence=IEA
GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;ISS
GO:0006397 "mRNA processing" evidence=IEA;ISS
GO:0006470 "protein dephosphorylation" evidence=IEA
GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IEA
GO:0016311 "dephosphorylation" evidence=IEA
GO:0016791 "phosphatase activity" evidence=IEA
GO:0009506 "plasmodesma" evidence=IDA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
TAIR|locus:2150154 AT5G01290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147575 AT5G28210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9G2 RNGTT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NTU7 RNGTT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1311410 Rngtt "RNA guanylyltransferase and 5'-phosphatase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHX7 RNGTT "RNA guanylyltransferase and 5'-phosphatase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O60942 RNGTT "mRNA-capping enzyme" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1329041 Rngtt "RNA guanylyltransferase and 5'-phosphatase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2087 rngtt "RNA guanylyltransferase and 5'-phosphatase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.7.500.737
3rd Layer3.1.3.33LOW CONFIDENCE prediction!
3rd Layer2.7.70.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VI.860.1
hypothetical protein (579 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_XI0288
hypothetical protein (370 aa)
    ••• 0.441

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query460
cd07895215 cd07895, Adenylation_mRNA_capping, Adenylation dom 1e-87
pfam01331193 pfam01331, mRNA_cap_enzyme, mRNA capping enzyme, c 5e-83
COG5226404 COG5226, CEG1, mRNA capping enzyme, guanylyltransf 9e-53
pfam03919105 pfam03919, mRNA_cap_C, mRNA capping enzyme, C-term 1e-29
cd06846182 cd06846, Adenylation_DNA_ligase_like, Adenylation 3e-13
>gnl|CDD|185706 cd07895, Adenylation_mRNA_capping, Adenylation domain of GTP-dependent mRNA capping enzymes Back     alignment and domain information 
 Score =  266 bits (682), Expect = 1e-87
 Identities = 96/212 (45%), Positives = 123/212 (58%), Gaps = 12/212 (5%)

Query: 121 GGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITI-DGCYLIDRCFNFR 179
            G     FPGS PVS +  NL+LL+Q  Y+   K+DG RY++LIT     YLIDR  +  
Sbjct: 15  PGWERGGFPGSQPVSFSRKNLELLKQNDYFVCEKSDGVRYLLLITGRGEVYLIDRKNDVF 74

Query: 180 RVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIER 239
           +V   F  R  N    E  H  TLLDGE++IDK+P    +  RYLI+D++A N  SV E+
Sbjct: 75  KVPGLFFPRRKNL---EPHHQGTLLDGELVIDKVPGK--KRPRYLIFDILAFNGQSVTEK 129

Query: 240 PFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFI 299
           P  ER K ++KEVIEPRN                  EPF VR KDF+ L  + KL ++ I
Sbjct: 130 PLSERLKYIKKEVIEPRNELLKK------GPIDKAKEPFSVRLKDFFPLYKIEKLFEKII 183

Query: 300 PKLSHDADGLVFQGWDDPYVPRTHEGLLKWKY 331
           PKL H+ DGL+F   D+PYVP T + LLKWK 
Sbjct: 184 PKLPHENDGLIFTPNDEPYVPGTDKNLLKWKP 215

RNA capping enzymes transfer GMP from GTP to the 5'-diphosphate end of nascent mRNAs to form a G(5')ppp(5')RNA cap structure. The RNA cap is found only in eukarya. RNA capping is chemically analogous to the first two steps of polynucleotide ligation. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. Structural studies reveal a shared structure for DNA ligases and capping enzymes, with a common catalytic core composed of an adenylation or nucleotidyltransferase domain and a C-terminal OB-fold domain containing conserved sequence motifs. The adenylation domain binds ATP and contains many active site residues. Length = 215
>gnl|CDD|216438 pfam01331, mRNA_cap_enzyme, mRNA capping enzyme, catalytic domain Back     alignment and domain information
>gnl|CDD|227551 COG5226, CEG1, mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|217793 pfam03919, mRNA_cap_C, mRNA capping enzyme, C-terminal domain Back     alignment and domain information
>gnl|CDD|185704 cd06846, Adenylation_DNA_ligase_like, Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 460
COG5226404 CEG1 mRNA capping enzyme, guanylyltransferase (alp 100.0
PF01331192 mRNA_cap_enzyme: mRNA capping enzyme, catalytic do 100.0
cd07895215 Adenylation_mRNA_capping Adenylation domain of GTP 100.0
KOG2386393 consensus mRNA capping enzyme, guanylyltransferase 100.0
cd06846182 Adenylation_DNA_ligase_like Adenylation domain of 99.96
cd07898201 Adenylation_DNA_ligase Adenylation domain of ATP-d 99.94
cd07903225 Adenylation_DNA_ligase_IV Adenylation domain of DN 99.92
PRK09247539 ATP-dependent DNA ligase; Validated 99.91
cd07897207 Adenylation_DNA_ligase_Bac1 Adenylation domain of 99.91
cd07906190 Adenylation_DNA_ligase_LigD_LigC Adenylation domai 99.9
cd07901207 Adenylation_DNA_ligase_Arch_LigB Adenylation domai 99.9
cd07905194 Adenylation_DNA_ligase_LigC Adenylation domain of 99.89
PF03919105 mRNA_cap_C: mRNA capping enzyme, C-terminal domain 99.89
cd07900219 Adenylation_DNA_ligase_I_Euk Adenylation domain of 99.89
cd09232186 Snurportin-1_C C-terminal m3G cap-binding domain o 99.89
TIGR02779298 NHEJ_ligase_lig DNA polymerase LigD, ligase domain 99.89
PRK08224350 ligC ATP-dependent DNA ligase; Reviewed 99.88
PRK07636275 ligB ATP-dependent DNA ligase; Reviewed 99.88
cd08039235 Adenylation_DNA_ligase_Fungal Adenylation domain o 99.88
PRK09633 610 ligD ATP-dependent DNA ligase; Reviewed 99.88
PHA02587488 30 DNA ligase; Provisional 99.87
PRK05972 860 ligD ATP-dependent DNA ligase; Reviewed 99.87
cd07902213 Adenylation_DNA_ligase_III Adenylation domain of D 99.87
TIGR00574514 dnl1 DNA ligase I, ATP-dependent (dnl1). All prote 99.87
PRK03180508 ligB ATP-dependent DNA ligase; Reviewed 99.85
PRK09632764 ATP-dependent DNA ligase; Reviewed 99.84
PLN03113744 DNA ligase 1; Provisional 99.84
PRK01109590 ATP-dependent DNA ligase; Provisional 99.84
PF01068202 DNA_ligase_A_M: ATP dependent DNA ligase domain; I 99.84
COG1793444 CDC9 ATP-dependent DNA ligase [DNA replication, re 99.82
PHA00454315 ATP-dependent DNA ligase 99.81
PRK09125282 DNA ligase; Provisional 99.78
cd07896174 Adenylation_kDNA_ligase_like Adenylation domain of 99.75
TIGR02776 552 NHEJ_ligase_prk DNA ligase D. Members of this prot 99.68
KOG2386393 consensus mRNA capping enzyme, guanylyltransferase 99.68
KOG0966 881 consensus ATP-dependent DNA ligase IV [Replication 99.64
KOG0967714 consensus ATP-dependent DNA ligase I [Replication, 99.33
cd07894342 Adenylation_RNA_ligase Adenylation domain of RNA c 99.13
KOG3132325 consensus m3G-cap-specific nuclear import receptor 97.95
TIGR01209374 RNA ligase, Pab1020 family. Members of this family 97.64
COG1423382 ATP-dependent DNA ligase, homolog of eukaryotic li 96.56
PF01653315 DNA_ligase_aden: NAD-dependent DNA ligase adenylat 95.41
KOG3673845 consensus FtsJ-like RNA methyltransferase [RNA pro 93.69
smart00532441 LIGANc Ligase N family. 93.48
cd00114307 LIGANc NAD+ dependent DNA ligase adenylation domai 93.47
PRK07956 665 ligA NAD-dependent DNA ligase LigA; Validated 92.53
PF09414186 RNA_ligase: RNA ligase; InterPro: IPR021122 This e 92.32
PF05098450 LEF-4: Late expression factor 4 (LEF-4); InterPro: 92.31
PRK14351 689 ligA NAD-dependent DNA ligase LigA; Provisional 90.98
PRK14350 669 ligA NAD-dependent DNA ligase LigA; Provisional 90.4
PHA02142366 putative RNA ligase 89.94
TIGR00575 652 dnlj DNA ligase, NAD-dependent. The member of this 89.91
TIGR02307325 RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of t 88.76
PRK08097 562 ligB NAD-dependent DNA ligase LigB; Reviewed 88.02
>COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=9.1e-68  Score=510.19  Aligned_cols=336  Identities=33%  Similarity=0.457  Sum_probs=278.7

Q ss_pred             CCCCCccccchHHHHHHHHHHHhcccCCCCCCCCCCCCcccccccccccccccCceEEEEcCCeeEEEEEEECC------
Q 012588           94 DVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITID------  167 (460)
Q Consensus        94 ~v~G~~~~~~~~~~~r~~~~~l~~~~~~~~~~~~FPGsqPVSl~r~nl~~l~~~~Y~V~~K~DG~R~Ll~i~~~------  167 (460)
                      .++|+.+|++.++.|+-++.++++..   .+...|||||||||+.+|++.|..++|+||||+||+|+||+++.+      
T Consensus        12 ~~pG~~~P~di~~~Lkt~i~klL~~~---~P~~tFpGsqPVsf~~~~i~~Ll~~dy~VCEKsDGvR~Ll~vte~p~tg~~   88 (404)
T COG5226          12 FRPGNKVPPDIAEALKTKIYKLLCIT---EPRETFPGSQPVSFTLDNIGLLLNNDYLVCEKSDGVRALLLVTEEPVTGAF   88 (404)
T ss_pred             ccCCCcCCchHHHHHHHHHHHHhCCC---CCcccCCCCcceeeehhhHHHHHhCCeEEEEccCCeEEEEEEEecccCCCc
Confidence            47899999999999999999999753   235999999999999999999999999999999999999999753      


Q ss_pred             EEEEEeCCCcccccc-CcCCcccCC-CCccccCCCceeeeeEEEEecCCCCCcceeEEEEeeeeecCCccccCCCHHHHH
Q 012588          168 GCYLIDRCFNFRRVQ-MRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERW  245 (460)
Q Consensus       168 ~vyLidR~~~~~~v~-~~FP~~~~~-~~l~~~~~~~TlLDGElV~d~~~~~~~~~~ryliFDiL~~~G~~l~~~pf~eRl  245 (460)
                      ++|++||+|+|+.++ ..||..... +|  +..+.+|+||||+|.|..+.++-++++|++||||+++|.-++.++.++|+
T Consensus        89 ~~y~~DR~nnfY~v~~~f~p~~~~~k~g--e~l~~dtlldgelV~d~~p~~k~~qlryl~fdcLa~~g~~~~~~~~s~Rl  166 (404)
T COG5226          89 RGYFYDRRNNFYEVHTSFPPCSTVLKDG--EVLLEDTLLDGELVFDCLPYEKVPQLRYLLFDCLAYAGMFVERMEKSERL  166 (404)
T ss_pred             ceEEEeccCceEEeccccCCcccccccC--cEEeccceecceEEEEeccccchHHHHHHHHHHhhhcceeEeecchhhHH
Confidence            699999999998885 555544322 22  24578999999999998877643679999999999999999999999999


Q ss_pred             HHHHHHhcCccchhhccccccCCCCccCCCCCeEEEeccceechhHHHHHHHhccccCCCCceEEEEcCCCCCccCCCCC
Q 012588          246 KMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEG  325 (460)
Q Consensus       246 ~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~~K~f~~~~~~~~ll~~~~~~l~h~~DGLIF~p~~spY~~G~~~~  325 (460)
                      +.|++++.+|+.....      +-.++....||.+.+|.|...++.-++++ -+|.|.|++|||||||+++||..|++..
T Consensus       167 ~~l~Ke~~kp~~~~r~------s~~~~~~~fpf~~s~K~M~~syg~~ki~k-~ip~L~HgnDGLIFTp~~~PY~~Gkd~~  239 (404)
T COG5226         167 KTLQKEDEKPRERKRV------SIEIDSGSFPFHFSVKQMLKSYGFWKIYK-KIPELKHGNDGLIFTPADEPYSVGKDGA  239 (404)
T ss_pred             HHhhhhhcccHhhhhh------eeeccccccceeeeHHHHHhhhhHHHHHh-hcccccCCCCceEeccCCCCcccCccce
Confidence            9999999999865442      22234456799999999999999999995 5799999999999999999999999999


Q ss_pred             eEEEccCCCceEEEEEEEec----C--------CceeEEEEeCCcee-eecCceeEecC-------CCCCCCCceEEEEE
Q 012588          326 LLKWKYARMNSVDFLFEVTD----D--------DRQLLYVFERGKKK-LMEGSSVEFTD-------REPSFYSGKIIECT  385 (460)
Q Consensus       326 ~LKWKP~~~nTVDF~l~~~~----~--------~~~~L~v~~~g~~~-~~~~~~~~f~~-------~~~~~~dg~IvEC~  385 (460)
                      +|||||.++|||||++.+..    +        +...|+|+.+.+.. +|+.  +...+       ..-..+.++||||.
T Consensus       240 lLKWKP~~~NTiDF~lvl~~~~~e~~Dyny~~~p~f~l~Vw~gRk~yrfFa~--~~v~d~ew~~lk~~~~pl~~rivEc~  317 (404)
T COG5226         240 LLKWKPASLNTIDFRLVLHKKWSEVDDYNYVCSPKFGLDVWFGRKTYRFFAS--GEVIDGEWCELKYDCDPLYWRIVECV  317 (404)
T ss_pred             eeecCccccCceeeeeeeccccccccCcceeecccccccEEecccceeeeee--eEechHHHHHHhhhcccchhhHHHHH
Confidence            99999999999999998762    1        12467777643322 3331  22222       23456999999999


Q ss_pred             EeCCCCeeEEEEEecCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHhhc------Cccchhcc
Q 012588          386 WDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEIIR------LPMYADRI  444 (460)
Q Consensus       386 ~d~~~~~W~f~R~R~DK~~pN~~~tv~~v~~SI~~~Vt~e~Ll~~i~~~~~------~~~~~~~~  444 (460)
                      .+. .|.|+++|+|+||..|||++||.+|++||+|+||.|+|..+..-|+.      .||...|.
T Consensus       318 l~~-e~~W~~lrfRdDK~~~NhisvV~~VLeSi~D~vs~EdL~~~~~vire~~~~R~k~~~~~R~  381 (404)
T COG5226         318 LKK-EGAWKLLRFRDDKDTPNHISVVCNVLESIRDNVSIEDLSTFYSVIRENSKRREKAMRRGRP  381 (404)
T ss_pred             hcc-CCceEEEEeecCCCCCchhhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhhhhccccCCC
Confidence            984 56899999999999999999999999999999999999998877733      56655554

>PF01331 mRNA_cap_enzyme: mRNA capping enzyme, catalytic domain; InterPro: IPR001339 The mRNA capping enzyme in yeasts is composed of two separate chains, alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate Back     alignment and domain information
>cd07895 Adenylation_mRNA_capping Adenylation domain of GTP-dependent mRNA capping enzymes Back     alignment and domain information
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] Back     alignment and domain information
>cd06846 Adenylation_DNA_ligase_like Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases Back     alignment and domain information
>cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases Back     alignment and domain information
>cd07903 Adenylation_DNA_ligase_IV Adenylation domain of DNA Ligase IV Back     alignment and domain information
>PRK09247 ATP-dependent DNA ligase; Validated Back     alignment and domain information
>cd07897 Adenylation_DNA_ligase_Bac1 Adenylation domain of putative bacterial ATP-dependent DNA ligases Back     alignment and domain information
>cd07906 Adenylation_DNA_ligase_LigD_LigC Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases Back     alignment and domain information
>cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases Back     alignment and domain information
>cd07905 Adenylation_DNA_ligase_LigC Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases Back     alignment and domain information
>PF03919 mRNA_cap_C: mRNA capping enzyme, C-terminal domain; InterPro: IPR013846 This domain is found at the C terminus of the mRNA capping enzyme Back     alignment and domain information
>cd07900 Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I Back     alignment and domain information
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1 Back     alignment and domain information
>TIGR02779 NHEJ_ligase_lig DNA polymerase LigD, ligase domain Back     alignment and domain information
>PRK08224 ligC ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PRK07636 ligB ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>cd08039 Adenylation_DNA_ligase_Fungal Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins Back     alignment and domain information
>PRK09633 ligD ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PHA02587 30 DNA ligase; Provisional Back     alignment and domain information
>PRK05972 ligD ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>cd07902 Adenylation_DNA_ligase_III Adenylation domain of DNA Ligase III Back     alignment and domain information
>TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1) Back     alignment and domain information
>PRK03180 ligB ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PRK09632 ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PLN03113 DNA ligase 1; Provisional Back     alignment and domain information
>PRK01109 ATP-dependent DNA ligase; Provisional Back     alignment and domain information
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>COG1793 CDC9 ATP-dependent DNA ligase [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA00454 ATP-dependent DNA ligase Back     alignment and domain information
>PRK09125 DNA ligase; Provisional Back     alignment and domain information
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins Back     alignment and domain information
>TIGR02776 NHEJ_ligase_prk DNA ligase D Back     alignment and domain information
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] Back     alignment and domain information
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] Back     alignment and domain information
>KOG0967 consensus ATP-dependent DNA ligase I [Replication, recombination and repair] Back     alignment and domain information
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins Back     alignment and domain information
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification] Back     alignment and domain information
>TIGR01209 RNA ligase, Pab1020 family Back     alignment and domain information
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair] Back     alignment and domain information
>PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification] Back     alignment and domain information
>smart00532 LIGANc Ligase N family Back     alignment and domain information
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>PF09414 RNA_ligase: RNA ligase; InterPro: IPR021122 This entry represents the RNA ligase domain Back     alignment and domain information
>PF05098 LEF-4: Late expression factor 4 (LEF-4); InterPro: IPR007790 The baculovirus Autographa californica nuclear polyhedrosis virus (AcMNPV) virus encodes a DNA-dependent RNA polymerase that is required for transcription of viral late genes Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PHA02142 putative RNA ligase Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family Back     alignment and domain information
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query460
3s24_A347 Crystal Structure Of Human Mrna Guanylyltransferase 4e-39
3rtx_A343 Crystal Structure Of Mammalian Capping Enzyme (Mce1 5e-39
3kyh_C461 Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatu 3e-28
1p16_A395 Structure Of An Mrna Capping Enzyme Bound To The Ph 1e-27
1ckm_A330 Structure Of Two Different Conformations Of Mrna Ca 2e-15
1ckn_B330 Structure Of Guanylylated Mrna Capping Enzyme Compl 7e-15
1i9t_A210 Crystal Structure Of The Oxidized Rna Triphosphatas 1e-05
1i9s_A210 Crystal Structure Of The Rna Triphosphatase Domain 1e-05
2c46_A241 Crystal Structure Of The Human Rna Guanylyltransfer 4e-04
>pdb|3S24|A Chain A, Crystal Structure Of Human Mrna Guanylyltransferase Length = 347 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (401), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/343 (36%), Positives = 176/343 (51%), Gaps = 48/343 (13%)
Query: 112 CYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDG--- 168
           C+Q     F G     FPG+ PVS++  N++LL  + Y  +WKADGTRYMML  IDG   
Sbjct: 29  CHQ-----FCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMML--IDGTNE 81
Query: 169 CYLIDRCFN-FRRVQMRFPCRNSNEGLGEKTHHF--TLLDGEMIIDKLPDSRRQERRYLI 225
            ++IDR  + F    + FP R       +   H   TLLDGEMIID++  + +   RYLI
Sbjct: 82  VFMIDRDNSVFHVSNLEFPFRK------DLRMHLSNTLLDGEMIIDRV--NGQAVPRYLI 133
Query: 226 YDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDF 285
           YD++  N   V +  F  R + +E+E+I PR+ +       +        EPF VR K F
Sbjct: 134 YDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQ------EPFSVRNKPF 187
Query: 286 WLLSTVNKLLK-EFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVT 344
           + + T  KLL+  F  ++SH+ DGL+FQ     Y P   + +LKWK   +NSVDF  ++T
Sbjct: 188 FDICTSRKLLEGNFAKEVSHEMDGLIFQP-TGKYKPGRCDDILKWKPPSLNSVDFRLKIT 246
Query: 345 --------DDDRQLLYV--FERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWK 394
                     +  LLYV  +ER   ++          +E   Y  KIIEC ++ +   W 
Sbjct: 247 RMGGEGLLPQNVGLLYVGGYERPFAQIK-------VTKELKQYDNKIIECKFENNS--WV 297
Query: 395 CMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEIIRL 437
            MR RTDKS PN  NT   V  SI + +T+E+L   I     L
Sbjct: 298 FMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDRCTAL 340
>pdb|3RTX|A Chain A, Crystal Structure Of Mammalian Capping Enzyme (Mce1) And Pol Ii Ctd Complex Length = 343 Back     alignment and structure
>pdb|3KYH|C Chain C, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus Length = 461 Back     alignment and structure
>pdb|1P16|A Chain A, Structure Of An Mrna Capping Enzyme Bound To The Phosphorylated Carboxyl-Terminal Domain Of Rna Polymerase Ii Length = 395 Back     alignment and structure
>pdb|1CKM|A Chain A, Structure Of Two Different Conformations Of Mrna Capping Enzyme In Complex With Gtp Length = 330 Back     alignment and structure
>pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping Enzyme Complexed With Gtp Length = 330 Back     alignment and structure
>pdb|1I9T|A Chain A, Crystal Structure Of The Oxidized Rna Triphosphatase Domain Of Mouse Mrna Capping Enzyme Length = 210 Back     alignment and structure
>pdb|1I9S|A Chain A, Crystal Structure Of The Rna Triphosphatase Domain Of Mouse Mrna Capping Enzyme Length = 210 Back     alignment and structure
>pdb|2C46|A Chain A, Crystal Structure Of The Human Rna Guanylyltransferase And 5'-Phosphatase Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query460
1ckm_A330 MRNA capping enzyme; nucleotidyltransferase; HET: 1e-64
1p16_A395 GTP--RNA, mRNA capping enzyme alpha subunit; guany 2e-64
3rtx_A343 MRNA-capping enzyme; guanylyltransferase, RNA poly 1e-60
3kyh_C461 MRNA-capping enzyme subunit alpha; 5' modification 2e-57
2c46_A241 MRNA capping enzyme; phosphatase, transferase, hyd 4e-16
1yn9_A169 BVP, polynucleotide 5'-phosphatase; RNA triphospha 4e-08
2img_A151 Dual specificity protein phosphatase 23; DUSP23, V 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B* Length = 330 Back     alignment and structure
 Score =  210 bits (535), Expect = 1e-64
 Identities = 69/356 (19%), Positives = 140/356 (39%), Gaps = 44/356 (12%)

Query: 84  ENNEVTMTNDDVLGDEIPNDQ--QDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNL 141
           +N         + G +I   +   ++      +   L        + PG +PVS+   + 
Sbjct: 10  KNITTERAVLTLNGLQIKLHKVVGESRDDIVAKMKDLAMDDHKFPRLPGPNPVSIERKDF 69

Query: 142 QLLRQRYYYATWKADGTRYMMLIT----IDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEK 197
           + L+Q  Y  + K DG R+MM  T       C +IDR      +  +   R         
Sbjct: 70  EKLKQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPR--------V 121

Query: 198 THHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRN 257
               ++ DGE+ +D +     ++  ++++D + ++  +V +     R+  +++ + E +N
Sbjct: 122 LFQGSIFDGELCVDIVE----KKFAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKN 177

Query: 258 YERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEF-IPKLSHDADGLVFQGWDD 316
                             +P  +R K++  L     +          +  DGL+    D+
Sbjct: 178 VPE---------------DPAILRYKEWIPLEHPTIIKDHLKKANAIYHTDGLIIMSVDE 222

Query: 317 PYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTDREPSF 376
           P +   +  L K K    +++DF+    D    +     R    + +         +  +
Sbjct: 223 PVIYGRNFNLFKLKPGTHHTIDFIIMSEDGTIGIFDPNLRKNVPVGK--------LDGYY 274

Query: 377 YSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQ 432
             G I+EC +      WK ++ R+DK+  ND  TY K + +I +NIT + LL+  +
Sbjct: 275 NKGSIVECGFADGT--WKYIQGRSDKNQANDRLTYEKTLLNIEENITIDELLDLFK 328
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3 Length = 395 Back     alignment and structure
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A Length = 343 Back     alignment and structure
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae} Length = 461 Back     alignment and structure
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA processing, multifunctional enzyme, nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A 1i9t_A Length = 241 Back     alignment and structure
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus} Length = 169 Back     alignment and structure
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens} Length = 151 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query460
3rtx_A343 MRNA-capping enzyme; guanylyltransferase, RNA poly 100.0
3kyh_C461 MRNA-capping enzyme subunit alpha; 5' modification 100.0
1p16_A395 GTP--RNA, mRNA capping enzyme alpha subunit; guany 100.0
1ckm_A330 MRNA capping enzyme; nucleotidyltransferase; HET: 100.0
1vs0_A310 Putative DNA ligase-like protein RV0938/MT0965; OB 99.95
2cfm_A561 Thermostable DNA ligase; protein-nucleotide comple 99.94
2hiv_A621 Thermostable DNA ligase; ATP-dependent, open confo 99.93
1x9n_A688 DNA ligase I; 5'-adenylated nicked DNA, protein-DN 99.92
3gde_A558 DNA ligase; DNA-binding domain, adenylation domain 99.91
1fvi_A297 Chlorella virus DNA ligase-adenylate; adenylated D 99.9
3l2p_A579 DNA ligase 3; DNA ligase, DNA repair, ATP-binding, 99.88
1a0i_A348 DNA ligase; DNA replication; HET: DNA ATP; 2.60A { 99.87
3vnn_A139 DNA ligase 4; non-homologous END joining, DNA repa 99.73
3qwu_A370 DNA ligase; structural genomics, PSI-2, midwest ce 98.84
2vug_A389 PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transfe 98.75
1xk5_A204 Snurportin-1; protein-RNA-complex, transport prote 98.7
2c46_A241 MRNA capping enzyme; phosphatase, transferase, hyd 98.67
3gjx_B365 Snurportin-1; transport, cytoplasm, nucleus, RNA-b 98.53
1s68_A249 RNA ligase 2; ribonucleic acid ligase, RNA repair; 96.36
2hvq_A335 ORF1, hypothetical 37.6 kDa protein in GP24-HOC in 96.29
1ta8_A332 DNA ligase, NAD-dependent; nucleotidyl transferase 96.08
1b04_A318 Protein (DNA ligase); DNA replication; 2.80A {Geob 95.87
4glw_A305 DNA ligase; inhibitor, ligase-ligase inhibitor com 94.86
4glx_A 586 DNA ligase; inhibitor, ligase-ligase inhibitor-DNA 94.59
2oud_A177 Dual specificity protein phosphatase 10; A central 94.02
1ohe_A348 CDC14B, CDC14B2 phosphatase; protein phosphatase, 93.27
3jsl_A318 DNA ligase; NAD+-dependent, DNA damage, DNA repair 93.08
2hcm_A164 Dual specificity protein phosphatase; structural g 93.08
3uq8_A322 DNA ligase; adenylated protein, ATP-grAsp, rossman 92.52
1zau_A328 DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacteriu 91.03
1zzw_A149 Dual specificity protein phosphatase 10; MKP, PTP, 90.95
2hxp_A155 Dual specificity protein phosphatase 9; human phos 90.11
2g6z_A211 Dual specificity protein phosphatase 5; alpha/beta 89.09
2owo_A 671 DNA ligase; protein-DNA complex, ligase-DNA comple 88.35
2esb_A188 Dual specificity protein phosphatase 18; alpha/bet 87.39
2wgp_A190 Dual specificity protein phosphatase 14; MKP6, DUS 87.29
2y96_A219 Dual specificity phosphatase DUPD1; hydrolase; 2.3 85.54
1wrm_A165 Dual specificity phosphatase 22; DSP, JNK, hydrola 85.54
1yz4_A160 DUSP15, dual specificity phosphatase-like 15 isofo 85.43
1xdn_A277 RNA editing ligase MP52; HET: MSE ATP; 1.20A {Tryp 84.42
3emu_A161 Leucine rich repeat and phosphatase domain contain 84.22
2i6j_A161 Ssoptp, sulfolobus solfataricus protein tyrosine p 82.9
1dgs_A 667 DNA ligase; AMP complex, NAD+-dependent; HET: DNA 82.68
3sgi_A 615 DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tub 81.81
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A Back     alignment and structure
Probab=100.00  E-value=9.2e-79  Score=617.45  Aligned_cols=323  Identities=38%  Similarity=0.605  Sum_probs=223.0

Q ss_pred             ccccCCCCCCCccccch--HHHHHHHHHHHhcccCCCCCCCCCCCCcccccccccccccccCceEEEEcCCeeEEEEEEE
Q 012588           88 VTMTNDDVLGDEIPNDQ--QDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLIT  165 (460)
Q Consensus        88 ~~~~~~~v~G~~~~~~~--~~~~r~~~~~l~~~~~~~~~~~~FPGsqPVSl~r~nl~~l~~~~Y~V~~K~DG~R~Ll~i~  165 (460)
                      +||.+.+|.|+++++++  +.+||++|++||+|+.     .+|||||||||+|+||+.|.+++|+|||||||+|+||++.
T Consensus         7 ~f~~~~~v~gv~~v~~~~~~~~l~~~v~~~~~~~~-----~~FPGsqPVS~~r~nl~~L~~~~y~v~~K~DG~R~ll~i~   81 (343)
T 3rtx_A            7 IFLEGITVKGVTQVTTQPKLGEVQQKCHQFCGWEG-----SGFPGAQPVSMDKQNIRLLEQKPYKVSWKADGTRYMMLID   81 (343)
T ss_dssp             CSSSSSCCTTEEECCCTTHHHHHHHHHHHHTTCCS-----SSCCSEEEEECCTTGGGHHHHSCEEEEEECCCEEEEEEEC
T ss_pred             eecCCcccCCeEEeCChHHHHHHHHHHHHHhCCCC-----CCCCCceeeccchhhHHhhccCCEEEEECCCceEEEEEEE
Confidence            68999999999999884  7899999999998864     8899999999999999999999999999999999999999


Q ss_pred             -CCEEEEEeCCCccccc-cCcCCcccCCCCccccCCCceeeeeEEEEecCCCCCcceeEEEEeeeeecCCccccCCCHHH
Q 012588          166 -IDGCYLIDRCFNFRRV-QMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYE  243 (460)
Q Consensus       166 -~~~vyLidR~~~~~~v-~~~FP~~~~~~~l~~~~~~~TlLDGElV~d~~~~~~~~~~ryliFDiL~~~G~~l~~~pf~e  243 (460)
                       +++|||+||+++.+.+ +.+||+..+..    ..+.+||||||||+++..+.  ..++|+|||+|+++|++++++||.+
T Consensus        82 ~~~~v~L~sR~~~~~~~~~~~FP~~~~~~----~~~~~tvLDGElV~~~~~g~--~~~~~~~FDlL~~~G~dl~~~pl~e  155 (343)
T 3rtx_A           82 GTNEVFMIDRDNSVFHVSNLEFPFRKDLR----MHLSNTLLDGEMIIDKVNGQ--AVPRYLIYDIIKFNAQPVGDCDFNI  155 (343)
T ss_dssp             STTCEEEECTTCCEEEETTCCCEETTEEE----EECCSEEEEEEEEEEESSSS--EEEEEEEEEEEEBTTBCGGGSCHHH
T ss_pred             cCCEEEEEeCCCCeEEeccccCCcchhhh----ccCCCeEEEEEEEEecCCCc--EeeEEEEEEEEeECCcCcccCCHHH
Confidence             7899999999986544 58999875421    23578999999999864432  4689999999999999999999999


Q ss_pred             HHHHHHHHhcCccchhhccccccCCCCccCCCCCeEEEeccceechhHHHHH-HHhccccCCCCceEEEEcCCCCCccCC
Q 012588          244 RWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLL-KEFIPKLSHDADGLVFQGWDDPYVPRT  322 (460)
Q Consensus       244 Rl~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~~K~f~~~~~~~~ll-~~~~~~l~h~~DGLIF~p~~spY~~G~  322 (460)
                      |+++|++.|++|+..++      +++.+..+.+||.|+.|+||++++++++| .++++++.|++|||||||.+ ||.+||
T Consensus       156 R~~~L~~~i~~p~~~~~------~~~~~~~~~~pf~vr~K~~~~~~~~~~ll~~~~~~~l~~~~dGlIf~~~~-~Y~~G~  228 (343)
T 3rtx_A          156 RLQCIEREIISPRHEKM------KTGLIDKTQEPFSVRPKQFFDINISRKLLEGNFAKEVSHEMDGLIFQPIG-KYKPGR  228 (343)
T ss_dssp             HHHHHHHHTHHHHHHHH------HHSSCCTTTSSSEEEECCCEEGGGHHHHSCC----------CEEEEEESS-CCCCEE
T ss_pred             HHHHHHHHhhhHHHHHh------hcccccccCCCcEEEEEEeEehhhHHHHHhhhhHhhcCCCCCeEEEEECc-cCcCCC
Confidence            99999999999987554      23334567899999999999999999999 46889999999999999999 999999


Q ss_pred             CCCeEEEccCCCceEEEEEEEecCC-c-------eeEEEEeCCceeeecCceeEecCCCCCCCCceEEEEEEeCCCCeeE
Q 012588          323 HEGLLKWKYARMNSVDFLFEVTDDD-R-------QLLYVFERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWK  394 (460)
Q Consensus       323 ~~~~LKWKP~~~nTVDF~l~~~~~~-~-------~~L~v~~~g~~~~~~~~~~~f~~~~~~~~dg~IvEC~~d~~~~~W~  394 (460)
                      |.+||||||+++|||||+|++.... .       +.||+  +|...+|+.  +..+ ++++++||+||||+||  +|+|+
T Consensus       229 ~~~~lKwKp~~~~tvDF~l~~~~~~~~g~~~~~~~~l~~--~g~~~~f~~--~~~t-~~l~~ld~~IvEC~~~--~~~W~  301 (343)
T 3rtx_A          229 CDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYV--GGYERPFAQ--IKVT-KELKQYDNKIIECKFE--NNSWV  301 (343)
T ss_dssp             EEEEEEECCSTTCC------------------------------------------------------------------
T ss_pred             CcceEEEecCcceEEEEEEEecccCCCCccccccceEEE--CCeeeecce--eecc-ccchhcCCEEEEEEEE--CCEEE
Confidence            9999999999999999999887432 1       23444  344444442  2222 4567899999999998  68999


Q ss_pred             EEEEecCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHhh
Q 012588          395 CMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEII  435 (460)
Q Consensus       395 f~R~R~DK~~pN~~~tv~~v~~SI~~~Vt~e~Ll~~i~~~~  435 (460)
                      |||+|+||++||+++||.+||+||.++||+|+|+++|++..
T Consensus       302 ~~R~R~DK~~pN~~~tv~~v~~SI~d~Vt~e~L~~~i~~~~  342 (343)
T 3rtx_A          302 FMRQRIDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDRCA  342 (343)
T ss_dssp             ------------CHHHHHHHHHHHHSCCCHHHHHHHHHHHC
T ss_pred             EEEEcCCCCCCchHHHHHHHHHHHHccCCHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999998753
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3 Back     alignment and structure
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B* Back     alignment and structure
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* Back     alignment and structure
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* Back     alignment and structure
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 Back     alignment and structure
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} Back     alignment and structure
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A* Back     alignment and structure
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens} Back     alignment and structure
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1 Back     alignment and structure
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens} Back     alignment and structure
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus} Back     alignment and structure
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} Back     alignment and structure
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens} Back     alignment and structure
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA processing, multifunctional enzyme, nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A 1i9t_A Back     alignment and structure
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B Back     alignment and structure
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4 Back     alignment and structure
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A* Back     alignment and structure
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A* Back     alignment and structure
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2 Back     alignment and structure
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli} Back     alignment and structure
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens} Back     alignment and structure
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A Back     alignment and structure
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A* Back     alignment and structure
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus} Back     alignment and structure
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A* Back     alignment and structure
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis} Back     alignment and structure
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens} Back     alignment and structure
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A Back     alignment and structure
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens} Back     alignment and structure
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} Back     alignment and structure
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens} Back     alignment and structure
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens} Back     alignment and structure
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens} Back     alignment and structure
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens} Back     alignment and structure
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens} Back     alignment and structure
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4 Back     alignment and structure
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica} Back     alignment and structure
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A* Back     alignment and structure
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Back     alignment and structure
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 460
d1p16a2245 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subu 3e-46
d1ckma2228 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA 5e-35
d1ckma189 b.40.4.6 (A:239-327) RNA guanylyltransferase (mRNA 2e-19
d1p16a1145 b.40.4.6 (A:246-390) mRNA capping enzyme alpha sub 1e-18
d1i9sa_194 c.45.1.1 (A:) mRNA capping enzyme, triphosphatase 2e-10
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Length = 245 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: DNA ligase/mRNA capping enzyme, catalytic domain
family: mRNA capping enzyme
domain: mRNA capping enzyme alpha subunit
species: Yeast (Candida albicans) [TaxId: 5476]

 Score =  158 bits (400), Expect = 3e-46
 Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 18/244 (7%)

Query: 94  DVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNL-QLLRQRYYYAT 152
            + G+++  ++    R    + L     GR N  FPGS PVS    +L + L Q+ Y+  
Sbjct: 11  VIPGNKLDEEETKELRLMVAELL-----GRRNTGFPGSQPVSFERRHLEETLMQKDYFVC 65

Query: 153 WKADGTRYMMLITID-----GCYLIDRCFNFRRV-QMRFPCRNSNEGLGEKTHHFTLLDG 206
            K DG R ++ +  D     G +L+ R  ++  +  + FP   +        HH TLLDG
Sbjct: 66  EKTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREKPTYHHGTLLDG 125

Query: 207 EMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQS 266
           E++++    S     RY+I+D +AI+   +I+RP  +R   + + V++P +    N  + 
Sbjct: 126 ELVLENRNVSEPV-LRYVIFDALAIHGKCIIDRPLPKRLGYITENVMKPFD----NFKKH 180

Query: 267 RNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGL 326
                     PF+V  K        + +L   + KL H +DGL++   + PYV  T + L
Sbjct: 181 NPDIVNSPEFPFKVGFKTMLTSYHADDVLS-KMDKLFHASDGLIYTCAETPYVFGTDQTL 239

Query: 327 LKWK 330
           LKWK
Sbjct: 240 LKWK 243
>d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 228 Back     information, alignment and structure
>d1ckma1 b.40.4.6 (A:239-327) RNA guanylyltransferase (mRNA capping enzyme) {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 89 Back     information, alignment and structure
>d1p16a1 b.40.4.6 (A:246-390) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Length = 145 Back     information, alignment and structure
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 194 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query460
d1p16a2245 mRNA capping enzyme alpha subunit {Yeast (Candida 100.0
d1ckma2228 RNA guanylyltransferase (mRNA capping enzyme), N-t 100.0
d1x9na3220 DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 99.91
d1p16a1145 mRNA capping enzyme alpha subunit {Yeast (Candida 99.85
d1ckma189 RNA guanylyltransferase (mRNA capping enzyme) {Chl 99.81
d1a0ia2239 ATP-dependent DNA ligase, N-terminal domain {Bacte 99.74
d1fvia2188 ATP-dependent DNA ligase, N-terminal domain {Chlor 99.57
d1i9sa_194 mRNA capping enzyme, triphosphatase domain {Mouse 99.2
d1s68a_233 RNA ligase 2, N-terminal domain {Bacteriophage T4 98.45
d1b04a_312 Adenylation domain of NAD+-dependent DNA ligase {B 95.32
d1ta8a_313 Adenylation domain of NAD+-dependent DNA ligase {E 94.53
d1dgsa3314 Adenylation domain of NAD+-dependent DNA ligase {T 93.05
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: DNA ligase/mRNA capping enzyme, catalytic domain
family: mRNA capping enzyme
domain: mRNA capping enzyme alpha subunit
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=100.00  E-value=2.2e-46  Score=360.43  Aligned_cols=227  Identities=29%  Similarity=0.507  Sum_probs=186.8

Q ss_pred             CCCCccccchHHHHHHHHHHHhcccCCCCCCCCCCCCccccccccccc-ccccCceEEEEcCCeeEEEEEEEC-----CE
Q 012588           95 VLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQ-LLRQRYYYATWKADGTRYMMLITI-----DG  168 (460)
Q Consensus        95 v~G~~~~~~~~~~~r~~~~~l~~~~~~~~~~~~FPGsqPVSl~r~nl~-~l~~~~Y~V~~K~DG~R~Ll~i~~-----~~  168 (460)
                      |+|+.++++.++.+|..|+++|+|+     ..+|||||||||+|+||. .|.+++|+||||+||+||||++..     ++
T Consensus        12 ~pg~~~~~~~~~~~~~~v~~~~~~~-----~~~FpG~qPvs~~~~~~~~~L~~~~Y~v~eK~DG~R~lL~i~~~~~~~~~   86 (245)
T d1p16a2          12 IPGNKLDEEETKELRLMVAELLGRR-----NTGFPGSQPVSFERRHLEETLMQKDYFVCEKTDGLRCLLFLINDPDKGEG   86 (245)
T ss_dssp             CSSEECCHHHHHHHHHHHHHHHTCS-----CCSCCCEEEEECCHHHHHTHHHHSCEEEEEEECSEEEEEEEEEETTTEEE
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHCCC-----CCCCCCCCcccccHHHHHhhhCcCCEEEEECcCCeEEEEEEEEcCCCceE
Confidence            7899999999999999999999874     389999999999999995 488899999999999999999963     36


Q ss_pred             EEEEeCCCccccc-cCcCCcccCCCCccccCCCceeeeeEEEEecCCCCCcceeEEEEeeeeecCCccccCCCHHHHHHH
Q 012588          169 CYLIDRCFNFRRV-QMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKM  247 (460)
Q Consensus       169 vyLidR~~~~~~v-~~~FP~~~~~~~l~~~~~~~TlLDGElV~d~~~~~~~~~~ryliFDiL~~~G~~l~~~pf~eRl~~  247 (460)
                      +||+||+++++.+ ...||............+.+|+||||+|.++.... +..++|+||||++++|+++++.||.+|+++
T Consensus        87 ~~li~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~tilDGElv~~~~~~~-~~~~~~~ifDil~~~g~~l~~~~l~~R~~~  165 (245)
T d1p16a2          87 VFLVTRENDYYFIPNIHFPLSVNETREKPTYHHGTLLDGELVLENRNVS-EPVLRYVIFDALAIHGKCIIDRPLPKRLGY  165 (245)
T ss_dssp             EEEEETTCCEEECCSCCCCSCTTCCSSSCCCCSSEEEEEEEEEECCSSS-CCEEEEEEEEEEEETTEECTTSCHHHHHHH
T ss_pred             EEEEeCCCCeEEccccccccccccccccccccCCeeEEEEEEeecccCC-cceEEEEEeeehhhCCceeeeccHHHHHHH
Confidence            8999999985444 57788664332222234678999999999875433 246899999999999999999999999999


Q ss_pred             HHHHhcCccchhhccccccCCCCccCCCCCeEEEeccceechhHHHHHHHhccccCCCCceEEEEcCCCCCccCCCCCeE
Q 012588          248 LEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLL  327 (460)
Q Consensus       248 L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~~K~f~~~~~~~~ll~~~~~~l~h~~DGLIF~p~~spY~~G~~~~~L  327 (460)
                      |++.+..++....+..    .........+|.+..|+|+.++.+.++++ .++++.|++|||||||.++||++||+..||
T Consensus       166 l~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~k~~~~~~~~~~l~~-~~~~~~~~~DGLIf~p~~~pY~~Gr~~~~l  240 (245)
T d1p16a2         166 ITENVMKPFDNFKKHN----PDIVNSPEFPFKVGFKTMLTSYHADDVLS-KMDKLFHASDGLIYTCAETPYVFGTDQTLL  240 (245)
T ss_dssp             HHHHTHHHHHHHHHHC----HHHHSCTTSCCEEEECCCEEGGGTHHHHT-TGGGCSSCEEEEEEEESSSCCCSEEEEEEE
T ss_pred             HHHHHHHhhhhhhhcc----cccccchhhhhhhhhhhhhhHHHHHHHHH-HhhhcCCCCCeEEEEcCCCCEeCCCCCCeE
Confidence            9998877654332100    00111245689999999999999999886 468899999999999999999999999999


Q ss_pred             EEccC
Q 012588          328 KWKYA  332 (460)
Q Consensus       328 KWKP~  332 (460)
                      ||||.
T Consensus       241 KWKP~  245 (245)
T d1p16a2         241 KWKPA  245 (245)
T ss_dssp             EECCG
T ss_pred             EeCCC
Confidence            99983
>d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p16a1 b.40.4.6 (A:246-390) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1ckma1 b.40.4.6 (A:239-327) RNA guanylyltransferase (mRNA capping enzyme) {Chlorella virus PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} Back     information, alignment and structure