Citrus Sinensis ID: 012592

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

MEKFRKIPVNGTRWSTFKYLLVIELMGGIISKRESSRQPSFGSSSYSWNHHNYPQQPPYGQPSQEYAPQQYYATPSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNILGAQRGKAVDRVSLPPPQYGAASQNTPKTSRSSSFRPSAPSGHERVVGTAPPASSTSDNHVCPICLTDPKDMAFGCGHQTCCGCGQDLDLCPICRSFIQTRIKLY

ccccccccccccccEEEEEEEEEHHcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHccccEEccEEEEEccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHcccEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccHHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccEEEEEcHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccHHHHHHHHccc

cccEcEcccccccHHHHHHEEEEEHccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEEEEEEEccccccccccccccccccEccccccHHHHHHHHHHHHHHccccccccccccccccccccccEEccccccccccHHHHHHHHHHHHcccEEEcccccHHHHHHHHHHHHHHccccEEEEEEEEccEEEEEcccccccccccHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHccccccHHHcEEEEEcHHHHHcccccccccHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccHHHcccccccccccccccEEEEEEc

mekfrkipvngtrwSTFKYLLVIELMGGIiskressrqpsfgsssyswnhhnypqqppygqpsqeyapqqyyatpsqsysgrapestrKLERKyskiddnyhSLEQVTDALARAglessnlivgidftksnewtgarsFQRRSlhhigddqnpYEQAISIIGKtlssfdednlipcfgfgdasthdqevfsfypdekfcnGFEEVLRRYRELVPhlrlagptsfaPIIEMAITIVEHSGGQYHVLVIIAdgqvtrsvdtehgqlssqEKKTVEAIVKASEYPLSIILVgvgdgpwdmmrefddniparafdnfqfvNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNILGaqrgkavdrvslpppqygaasqntpktsrsssfrpsapsghervvgtappasstsdnhvcpicltdpkdmafgcghqtccgcgqdldlcpiCRSFIQTRIKLY

mekfrkipvngtrwstfKYLLVIELMGGIISKRESSRQPSFGSSSYSWNHHNYPQQPPYGQPSQEYAPQQYyatpsqsysgrapestRKLERKyskiddnyhSLEQVTDALARAGLESSNLIVGIDftksnewtgARSFQRRSLhhigddqnpYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTehgqlssqekkTVEAIvkaseyplsIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNILGAQRGKAVDRVSLPPpqygaasqntpktsrssSFRPSAPSGHERVVGTappasstsdnhVCPICLTDPKDMAFGCGHQTCCGCGQDLDLCPICRSFIQTRIKLY

MEKFRKIPVNGTRWSTFKYLLVIELMGGIISKRESSRQPSFGSSSYSWNHHNypqqppygqpsqeyAPQQYYATPSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNILGAQRGKAVDRVSLPPPQYGAASQNTPKTsrsssfrpsapsGHERVVGTAPPASSTSDNHVCPICLTDPKDMAFgcghqtccgcgqDLDLCPICRSFIQTRIKLY

******IPVNGTRWSTFKYLLVIELMGGII************************************************************************SLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTR****************VEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNILGAQR******************************************************HVCPICLTDPKDMAFGCGHQTCCGCGQDLDLCPICRSFIQTRI***

********VNGTRWSTFKYLLVIEL********************************************************************YSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEW****SFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRS*************KTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKN*****KEAEFALAALMEIPSQYKAALEFNILGAQRGKAVDRVSLPPPQYGAASQNTPKTSR***************************NHVCPICLTDPKDMAFGCGHQTCCGCGQDLDLCPICRSFIQTRIKLY

MEKFRKIPVNGTRWSTFKYLLVIELMGGIISKR************YSWNHHNYPQQPPYGQPSQEYAPQQYY*****************LERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRS**************TVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNILGAQRGKAVDRVSLPPP*****************************************NHVCPICLTDPKDMAFGCGHQTCCGCGQDLDLCPICRSFIQTRIKLY

**KFRKIPVNGTRWSTFKYLLVIELMG***************************************APQQYYATPSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNILG********************************************************NHVCPICLTDPKDMAFGCGHQTCCGCGQDLDLCPICRSFIQTRIKLY

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SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		460	2.2.26 [Sep-21-2011]
Q9LY87		468	E3 ubiquitin-protein liga	yes	no	0.858	0.844	0.720	1e-168
Q9SS90		489	E3 ubiquitin-protein liga	no	no	0.795	0.748	0.721	1e-159
Q09221		7705	Copine family protein 2 O	yes	no	0.526	0.031	0.518	7e-70
Q99829		537	Copine-1 OS=Homo sapiens	yes	no	0.530	0.454	0.305	7e-24
Q9DC53		564	Copine-8 OS=Mus musculus	yes	no	0.460	0.375	0.320	3e-23
Q86YQ8		564	Copine-8 OS=Homo sapiens	no	no	0.460	0.375	0.320	3e-23
Q96FN4		548	Copine-2 OS=Homo sapiens	no	no	0.434	0.364	0.330	3e-23
Q9HCH3		593	Copine-5 OS=Homo sapiens	no	no	0.458	0.355	0.326	2e-22
Q5BJS7		553	Copine-9 OS=Rattus norveg	no	no	0.458	0.381	0.326	2e-22
Q8JZW4		593	Copine-5 OS=Mus musculus	no	no	0.458	0.355	0.326	2e-22

>sp\|Q9LY87\|RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1	Back alignment and function desciption

 Score =  591 bits (1524), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/404 (72%), Positives = 335/404 (82%), Gaps = 9/404 (2%)

Query: 63  SQEYAPQQYYATPSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLI 122
           +Q Y+   Y A PSQSY     ++ ++LERKYSKI D+Y SLEQVT+ALARAGLESSNLI
Sbjct: 68  TQPYSAPSYSAPPSQSYGS---DNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLI 124

Query: 123 VGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDA 182
           VGIDFTKSNEWTGARSF R+SLH IG   NPYEQAI+IIG+TL++FDEDNLIPC+GFGDA
Sbjct: 125 VGIDFTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDA 184

Query: 183 STHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQY 242
           STHDQ+VFSF  +++FCNGFEEVL RY+E+VP L+LAGPTSFAPII+MA+TIVE SGGQY
Sbjct: 185 STHDQDVFSFNSEDRFCNGFEEVLSRYKEIVPQLKLAGPTSFAPIIDMAMTIVEQSGGQY 244

Query: 243 HVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 302
           HVLVIIADGQVTRSVDTE+GQLS QE+KTV+AIV+AS+ PLSI+LVGVGDGPWDMMREFD
Sbjct: 245 HVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFD 304

Query: 303 DNIPARAFDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNILGAQRGK 362
           DNIPARAFDNFQFVNFTEIM+KN  +S KE EFAL+ALMEIP QYKA +E N+LG + G 
Sbjct: 305 DNIPARAFDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGY 364

Query: 363 AVDRVSLPPPQYGAASQ-NTPKTSRSSSFRPSAPSG-----HERVVGTAPPASSTSDNHV 416
             +R  LPPP  G +S  N+PK SR  SF+PS P       H R     PP SS SDN +
Sbjct: 365 IPERFPLPPPMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASDNQL 424

Query: 417 CPICLTDPKDMAFGCGHQTCCGCGQDLDLCPICRSFIQTRIKLY 460
           CPICL++PKDMAFGCGHQTCC CG DL +CPICR+ IQTRIKLY
Sbjct: 425 CPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468

E3 ubiquitin-protein ligase that mediates the formation of 'Lys-63'-linked multiubiquitin chains. Regulates apical dominance by acting on the auxin transport proteins abundance.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q9SS90\|RGLG1_ARATH E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1	Back alignment and function description

>sp\|Q09221\|CPNA2_CAEEL Copine family protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=4	Back alignment and function description

>sp\|Q99829\|CPNE1_HUMAN Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1	Back alignment and function description

>sp\|Q9DC53\|CPNE8_MOUSE Copine-8 OS=Mus musculus GN=Cpne8 PE=2 SV=2	Back alignment and function description

>sp\|Q86YQ8\|CPNE8_HUMAN Copine-8 OS=Homo sapiens GN=CPNE8 PE=1 SV=2	Back alignment and function description

>sp\|Q96FN4\|CPNE2_HUMAN Copine-2 OS=Homo sapiens GN=CPNE2 PE=1 SV=3	Back alignment and function description

>sp\|Q9HCH3\|CPNE5_HUMAN Copine-5 OS=Homo sapiens GN=CPNE5 PE=1 SV=2	Back alignment and function description

>sp\|Q5BJS7\|CPNE9_RAT Copine-9 OS=Rattus norvegicus GN=Cpne9 PE=2 SV=1	Back alignment and function description

>sp\|Q8JZW4\|CPNE5_MOUSE Copine-5 OS=Mus musculus GN=Cpne5 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		460
255540451		433	copine, putative [Ricinus communis] gi\|2	0.930	0.988	0.822	0.0
225456844		433	PREDICTED: E3 ubiquitin-protein ligase R	0.934	0.993	0.780	0.0
224119510		442	predicted protein [Populus trichocarpa]	0.882	0.918	0.829	0.0
356516613		428	PREDICTED: E3 ubiquitin-protein ligase R	0.878	0.943	0.820	0.0
359807369		427	uncharacterized protein LOC100809850 [Gl	0.923	0.995	0.787	0.0
449440616		432	PREDICTED: E3 ubiquitin-protein ligase R	0.886	0.944	0.780	0.0
359473120		442	PREDICTED: E3 ubiquitin-protein ligase R	0.941	0.979	0.733	0.0
224133728		414	predicted protein [Populus trichocarpa]	0.878	0.975	0.741	1e-179
225452296		461	PREDICTED: E3 ubiquitin-protein ligase R	0.913	0.911	0.732	1e-179
255572066		461	copine, putative [Ricinus communis] gi\|2	0.910	0.908	0.718	1e-176

>gi\|255540451\|ref\|XP_002511290.1\| copine, putative [Ricinus communis] gi\|223550405\|gb\|EEF51892.1\| copine, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/440 (82%), Positives = 383/440 (87%), Gaps = 12/440 (2%)

Query: 26  MGGIISKRESSRQPSFGSSSYSWNHHNYPQQPPYGQPSQEYAPQQYYATPSQSYSGRAPE 85
           MGG +SKR S RQ    S SYSW++    QQPPY QP QEY   + YA   QSY G+AP 
Sbjct: 1   MGGRLSKRASPRQ---ASPSYSWSY----QQPPYAQPGQEYMAYENYAPAPQSYGGQAPN 53

Query: 86  STRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLH 145
           S R+LERKYSKIDDNY+SLEQVTDALAR+GLESSNLIVGIDFTKSNEWTGARSF RRSLH
Sbjct: 54  SGRRLERKYSKIDDNYNSLEQVTDALARSGLESSNLIVGIDFTKSNEWTGARSFNRRSLH 113

Query: 146 HIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEV 205
           HIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSF  DE FCNGFEEV
Sbjct: 114 HIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFNSDESFCNGFEEV 173

Query: 206 LRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLS 265
           LRRYRELVPHLRLAGPTSFAPIIEMAITIVE SGGQYHVLVIIADGQVTRSVDT+HGQLS
Sbjct: 174 LRRYRELVPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTQHGQLS 233

Query: 266 SQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKN 325
            QEK+TVEAIVKASEYPLSIILVGVGDGPWDMM+EFDDNIPARAFDNFQFVNFTEIMSKN
Sbjct: 234 PQEKRTVEAIVKASEYPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKN 293

Query: 326 VDRSRKEAEFALAALMEIPSQYKAALEFNILGAQRGKAVDRVSLPPPQYGAASQNTPKTS 385
           VDRS+KEAEFALAALMEIPSQY+A LE +ILG+ RGKA+DR+ LPPPQYGAA+ +  K S
Sbjct: 294 VDRSKKEAEFALAALMEIPSQYRATLELSILGSTRGKAIDRIPLPPPQYGAATLSNSKPS 353

Query: 386 RSSSFRPSAPSG-----HERVVGTAPPASSTSDNHVCPICLTDPKDMAFGCGHQTCCGCG 440
           RSSSF PSAPS             APPASSTSDNH+CPICLT+ KDMAFGCGHQTCC CG
Sbjct: 354 RSSSFHPSAPSSGRYNAQAAGTAPAPPASSTSDNHLCPICLTNAKDMAFGCGHQTCCDCG 413

Query: 441 QDLDLCPICRSFIQTRIKLY 460
           QDL LCPICRS I TRIKLY
Sbjct: 414 QDLQLCPICRSSINTRIKLY 433

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225456844\|ref\|XP_002279018.1\| PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Vitis vinifera] gi\|297733667\|emb\|CBI14914.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224119510\|ref\|XP_002318092.1\| predicted protein [Populus trichocarpa] gi\|222858765\|gb\|EEE96312.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356516613\|ref\|XP_003526988.1\| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max]	Back alignment and taxonomy information

>gi\|359807369\|ref\|NP_001240870.1\| uncharacterized protein LOC100809850 [Glycine max] gi\|255644673\|gb\|ACU22839.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|449440616\|ref\|XP_004138080.1\| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Cucumis sativus] gi\|449525732\|ref\|XP_004169870.1\| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|359473120\|ref\|XP_002282202.2\| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Vitis vinifera] gi\|296081383\|emb\|CBI16816.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224133728\|ref\|XP_002321646.1\| predicted protein [Populus trichocarpa] gi\|222868642\|gb\|EEF05773.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225452296\|ref\|XP_002271885.1\| PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Vitis vinifera] gi\|296087586\|emb\|CBI34842.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255572066\|ref\|XP_002526974.1\| copine, putative [Ricinus communis] gi\|223533726\|gb\|EEF35461.1\| copine, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		460
TAIR\|locus:2145643		468	RGLG2 "RING domain ligase2" [A	0.847	0.833	0.687	1.6e-141
TAIR\|locus:2084218		489	RGLG1 "RING domain ligase1" [A	0.823	0.775	0.661	5.2e-136
TAIR\|locus:2008570		453	AT1G67800 [Arabidopsis thalian	0.932	0.947	0.605	2.6e-134
TAIR\|locus:2206395		401	RGLG4 "RING DOMAIN LIGASE 4" [	0.658	0.755	0.601	7.2e-107
TAIR\|locus:2160821		367	RGLG3 "RING DOMAIN LIGASE 3" [	0.789	0.989	0.566	2.8e-105
DICTYBASE\|DDB_G0272196		284	DDB_G0272196 "copine family pr	0.560	0.908	0.512	3.6e-66
WB\|WBGene00006495		1107	cpna-1 [Caenorhabditis elegans	0.558	0.232	0.445	6.2e-54
ZFIN\|ZDB-GENE-040426-1398		574	cpne5 "copine V" [Danio rerio	0.460	0.369	0.341	1.2e-23
UNIPROTKB\|F1NKY6		544	LOC100858298 "Uncharacterized	0.530	0.448	0.323	1e-22
UNIPROTKB\|Q99829		537	CPNE1 "Copine-1" [Homo sapiens	0.530	0.454	0.319	1.3e-22

TAIR\|locus:2145643 RGLG2 "RING domain ligase2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1384 (492.3 bits), Expect = 1.6e-141, P = 1.6e-141
 Identities = 275/400 (68%), Positives = 316/400 (79%)

Query:    67 APQQYYATPSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGID 126
             AP  Y A PSQSY     ++ ++LERKYSKI D+Y SLEQVT+ALARAGLESSNLIVGID
Sbjct:    73 APS-YSAPPSQSYGS---DNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGID 128

Query:   127 FTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHD 186
             FTKSNEWTGARSF R+SLH IG   NPYEQAI+IIG+TL++FDEDNLIPC+GFGDASTHD
Sbjct:   129 FTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHD 188

Query:   187 QEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLV 246
             Q+VFSF  +++FCNGFEEVL RY+E+VP L+LAGPTSFAPII+MA+TIVE SGGQYHVLV
Sbjct:   189 QDVFSFNSEDRFCNGFEEVLSRYKEIVPQLKLAGPTSFAPIIDMAMTIVEQSGGQYHVLV 248

Query:   247 IIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIP 306
             IIADGQVTRSVDTE+GQLS QE+KTV+AIV+AS+ PLSI+LVGVGDGPWDMMREFDDNIP
Sbjct:   249 IIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIP 308

Query:   307 ARAFDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNILGAQRGKAVDR 366
             ARAFDNFQFVNFTEIM+KN  +S KE EFAL+ALMEIP QYKA +E N+LG + G   +R
Sbjct:   309 ARAFDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPER 368

Query:   367 VSLPPPQYGAASQ-NTPKTXXXXXXXXXX----XXG-HERVVGTAPPASSTSDNHVCPIC 420
               LPPP  G +S  N+PK                 G H R     PP SS SDN +CPIC
Sbjct:   369 FPLPPPMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASDNQLCPIC 428

Query:   421 LTDPKDMAFXXXXXXXXXXXXDLDLCPICRSFIQTRIKLY 460
             L++PKDMAF            DL +CPICR+ IQTRIKLY
Sbjct:   429 LSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009690 "cytokinin metabolic process" evidence=IGI;RCA

GO:0009850 "auxin metabolic process" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

GO:0080148 "negative regulation of response to water deprivation" evidence=IGI

TAIR\|locus:2084218 RGLG1 "RING domain ligase1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008570 AT1G67800 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2206395 RGLG4 "RING DOMAIN LIGASE 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2160821 RGLG3 "RING DOMAIN LIGASE 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0272196 DDB_G0272196 "copine family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

WB\|WBGene00006495 cpna-1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1398 cpne5 "copine V" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NKY6 LOC100858298 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q99829 CPNE1 "Copine-1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LY87	RGLG2_ARATH	6, ., 3, ., 2, ., -	0.7202	0.8586	0.8440	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0015020301	hypothetical protein (442 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		460
cd01459		254	cd01459, vWA_copine_like, VWA Copine: Copines are	1e-105
pfam07002		146	pfam07002, Copine, Copine	7e-70
pfam13920		49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	4e-11
smart00327		175	smart00327, VWA, von Willebrand factor (vWF) type	4e-10
pfam13923		45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	2e-07
cd00162		45	cd00162, RING, RING-finger (Really Interesting New	7e-06
smart00184		40	smart00184, RING, Ring finger	4e-04
pfam13639		46	pfam13639, zf-RING_2, Ring finger domain	6e-04
pfam00097		40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	0.003

>gnl\|CDD\|238736 cd01459, vWA_copine_like, VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium	Back alignment and domain information

 Score =  313 bits (805), Expect = e-105
 Identities = 125/274 (45%), Positives = 159/274 (58%), Gaps = 43/274 (15%)

Query: 97  IDDNYHSLEQVTD----------ALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHH 146
           I   Y S  +VT               AGLES NLIV IDFTKSN W G    ++RSLH+
Sbjct: 1   IKKVYKSSGEVTLTDCRVQPTFLDYRSAGLES-NLIVAIDFTKSNGWPG----EKRSLHY 55

Query: 147 IGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYP---DEKFCNGF 202
           I   + NPY++AI I+G+ L  +D D LIP FGFG   T DQ VFSF+P   +   C GF
Sbjct: 56  ISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSESPECQGF 115

Query: 203 EEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVE--HSGGQYHVLVIIADGQVTRSVDTE 260
           E VLR YRE +P++ L+GPT+FAP+I  A  I +  +S  +YH+L+II DG++T   +  
Sbjct: 116 EGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEITDMNE-- 173

Query: 261 HGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDD-------NIPARAFDNF 313
                     T++AIV+AS+YPLSI++VGVGDGP+D M   DD       +      D  
Sbjct: 174 ----------TIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIV 223

Query: 314 QFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQY 347
           QFV FTE MS        EA  A AAL EIPSQ 
Sbjct: 224 QFVPFTEFMSNA---GNPEAALATAALAEIPSQL 254

They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding. Length = 254

>gnl\|CDD\|219263 pfam07002, Copine, Copine	Back alignment and domain information

>gnl\|CDD\|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)	Back alignment and domain information

>gnl\|CDD\|214621 smart00327, VWA, von Willebrand factor (vWF) type A domain	Back alignment and domain information

>gnl\|CDD\|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)	Back alignment and domain information

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>gnl\|CDD\|214546 smart00184, RING, Ring finger	Back alignment and domain information

>gnl\|CDD\|222279 pfam13639, zf-RING_2, Ring finger domain	Back alignment and domain information

>gnl\|CDD\|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		460
KOG1327		529	consensus Copine [Signal transduction mechanisms]	100.0
cd01459		254	vWA_copine_like VWA Copine: Copines are phospholip	100.0
PF07002		146	Copine: Copine; InterPro: IPR010734 This represent	100.0
PF10138		200	vWA-TerF-like: vWA found in TerF C terminus ; Inte	99.98
cd01457		199	vWA_ORF176_type VWA ORF176 type: Von Willebrand fa	99.8
smart00327		177	VWA von Willebrand factor (vWF) type A domain. VWA	98.81
cd01461		171	vWA_interalpha_trypsin_inhibitor vWA_interalpha tr	98.78
PF13920		50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.69
cd01463		190	vWA_VGCC_like VWA Voltage gated Calcium channel li	98.63
KOG4172		62	consensus Predicted E3 ubiquitin ligase [Posttrans	98.59
cd00198		161	vWFA Von Willebrand factor type A (vWA) domain was	98.57
cd01471		186	vWA_micronemal_protein Micronemal proteins: The To	98.55
cd01464		176	vWA_subfamily VWA subfamily: Von Willebrand factor	98.49
cd01450		161	vWFA_subfamily_ECM Von Willebrand factor type A (v	98.44
PLN03208		193	E3 ubiquitin-protein ligase RMA2; Provisional	98.42
cd01466		155	vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact	98.42
PF15227		42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.38
KOG1571		355	consensus Predicted E3 ubiquitin ligase [Posttrans	98.37
cd01454		174	vWA_norD_type norD type: Denitrifying bacteria con	98.35
KOG0823		230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.33
PF13519		172	VWA_2: von Willebrand factor type A domain; PDB: 3	98.33
KOG4275		350	consensus Predicted E3 ubiquitin ligase [Posttrans	98.31
cd01465		170	vWA_subgroup VWA subgroup: Von Willebrand factor t	98.29
KOG0320		187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.28
PHA02929		238	N1R/p28-like protein; Provisional	98.27
KOG0317		293	consensus Predicted E3 ubiquitin ligase, integral	98.27
KOG4265		349	consensus Predicted E3 ubiquitin ligase [Posttrans	98.23
cd01456		206	vWA_ywmD_type VWA ywmD type:Von Willebrand factor	98.18
KOG2164		513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.14
cd01470		198	vWA_complement_factors Complement factors B and C2	98.13
cd01482		164	vWA_collagen_alphaI-XII-like Collagen: The extrace	98.13
cd01473		192	vWA_CTRP CTRP for CS protein-TRAP-related protein:	98.11
TIGR00599		397	rad18 DNA repair protein rad18. This family is bas	98.09
PHA02926		242	zinc finger-like protein; Provisional	98.09
cd01472		164	vWA_collagen von Willebrand factor (vWF) type A do	98.08
TIGR03788		596	marine_srt_targ marine proteobacterial sortase tar	98.07
cd01476		163	VWA_integrin_invertebrates VWA_integrin (invertebr	98.0
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.0
smart00504		63	Ubox Modified RING finger domain. Modified RING fi	97.94
PF13768		155	VWA_3: von Willebrand factor type A domain	97.93
PF13923		39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	97.93
cd01467		180	vWA_BatA_type VWA BatA type: Von Willebrand factor	97.92
cd01480		186	vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI	97.87
PF14634		44	zf-RING_5: zinc-RING finger domain	97.83
PF00092		178	VWA: von Willebrand factor type A domain; InterPro	97.82
cd01462		152	VWA_YIEM_type VWA YIEM type: Von Willebrand factor	97.82
PTZ00441		576	sporozoite surface protein 2 (SSP2); Provisional	97.73
cd01474		185	vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi	97.72
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	97.71
PF00097		41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	97.67
COG5574		271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.66
cd01475		224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	97.65
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	97.62
cd01453		183	vWA_transcription_factor_IIH_type Transcription fa	97.6
cd01451		178	vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch	97.59
cd01477		193	vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand	97.59
cd01469		177	vWA_integrins_alpha_subunit Integrins are a class	97.52
PF13445		43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.49
cd01460		266	vWA_midasin VWA_Midasin: Midasin is a member of th	97.48
smart00184		39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.46
PRK13685		326	hypothetical protein; Provisional	97.46
KOG0287		442	consensus Postreplication repair protein RAD18 [Re	97.41
KOG0311		381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.4
PF09967		126	DUF2201: VWA-like domain (DUF2201); InterPro: IPR0	97.34
PF14835		65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.31
KOG1785		563	consensus Tyrosine kinase negative regulator CBL [	97.29
cd01481		165	vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V	97.21
COG5540		374	RING-finger-containing ubiquitin ligase [Posttrans	97.18
cd01458		218	vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter	97.18
PF04564		73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.16
cd01455		191	vWA_F11C1-5a_type Von Willebrand factor type A (vW	97.14
KOG4628		348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.1
COG5432		391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.09
PRK13406		584	bchD magnesium chelatase subunit D; Provisional	97.04
TIGR02031		589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	97.0
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.92
KOG1100		207	consensus Predicted E3 ubiquitin ligase [Posttrans	96.88
PF12678		73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	96.86
cd01452		187	VWA_26S_proteasome_subunit 26S proteasome plays a	96.84
TIGR03436		296	acidobact_VWFA VWFA-related Acidobacterial domain.	96.81
COG5243		491	HRD1 HRD ubiquitin ligase complex, ER membrane com	96.55
TIGR02442		633	Cob-chelat-sub cobaltochelatase subunit. A number	96.47
KOG0802		543	consensus E3 ubiquitin ligase [Posttranslational m	96.31
KOG2879		298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.27
COG5236		493	Uncharacterized conserved protein, contains RING Z	96.24
KOG4159		398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.19
KOG4692		489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.13
PF12861		85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.01
PRK10997		487	yieM hypothetical protein; Provisional	95.82
KOG1039		344	consensus Predicted E3 ubiquitin ligase [Posttrans	95.79
TIGR00868		863	hCaCC calcium-activated chloride channel protein 1	95.75
PF05762		222	VWA_CoxE: VWA domain containing CoxE-like protein;	95.66
KOG3002		299	consensus Zn finger protein [General function pred	95.55
PF14447		55	Prok-RING_4: Prokaryotic RING finger family 4	95.24
COG5152		259	Uncharacterized conserved protein, contains RING a	94.75
KOG0825		1134	consensus PHD Zn-finger protein [General function	94.54
KOG2660		331	consensus Locus-specific chromosome binding protei	94.42
KOG3039		303	consensus Uncharacterized conserved protein [Funct	94.1
KOG0297		391	consensus TNF receptor-associated factor [Signal t	93.88
KOG1813		313	consensus Predicted E3 ubiquitin ligase [Posttrans	93.86
COG4245		207	TerY Uncharacterized protein encoded in toxicity p	93.79
KOG2177		386	consensus Predicted E3 ubiquitin ligase [Posttrans	93.71
PF14570		48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	93.63
PF04641		260	Rtf2: Rtf2 RING-finger	93.49
KOG0828		636	consensus Predicted E3 ubiquitin ligase [Posttrans	93.24
KOG1002		791	consensus Nucleotide excision repair protein RAD16	92.1
COG5175		480	MOT2 Transcriptional repressor [Transcription]	91.39
KOG0826		357	consensus Predicted E3 ubiquitin ligase involved i	90.93
KOG1001		674	consensus Helicase-like transcription factor HLTF/	90.74
KOG1734		328	consensus Predicted RING-containing E3 ubiquitin l	89.94
COG2425		437	Uncharacterized protein containing a von Willebran	88.34
KOG1493		84	consensus Anaphase-promoting complex (APC), subuni	88.22
COG5222		427	Uncharacterized conserved protein, contains RING Z	87.98
PF11793		70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	87.49
PF11789		57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	87.2
KOG1814		445	consensus Predicted E3 ubiquitin ligase [Posttrans	86.63
PF10367		109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	85.41
PF03731		224	Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte	84.47
COG1240		261	ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis	82.82
KOG2932		389	consensus E3 ubiquitin ligase involved in ubiquiti	82.47
COG5219		1525	Uncharacterized conserved protein, contains RING Z	81.58

>KOG1327 consensus Copine [Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=1.9e-78  Score=636.14  Aligned_cols=255  Identities=47%  Similarity=0.711  Sum_probs=237.5

Q ss_pred             HhhhcccccccccccHHHHHHHHHhcCcceeceEEEEecCCCCCCCCCCCCCCCCccccCC-CCCHHHHHHHHHhhcccc
Q 012592           89 KLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSS  167 (460)
Q Consensus        89 ~~~~~~~~i~~~y~~ld~v~~al~~~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~-~~N~Yq~AI~~Ig~il~~  167 (460)
                      .++.++..+.++|+++++++-++..+|++++||+||||||+||+|++.+    .|||||++ .+|+||+||++||+||++
T Consensus       256 ~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~----sSLHyi~p~~~N~Y~~Ai~~vG~~lq~  331 (529)
T KOG1327|consen  256 SYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNP----SSLHYIDPHQPNPYEQAIRSVGETLQD  331 (529)
T ss_pred             cccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCC----CcceecCCCCCCHHHHHHHHHhhhhcc
Confidence            3566899999999999999999999999999999999999999998754    59999996 789999999999999999


Q ss_pred             cCCCCccceEeeCCCCCC---CCc--ccccCCCCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcC---
Q 012592          168 FDEDNLIPCFGFGDASTH---DQE--VFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG---  239 (460)
Q Consensus       168 yD~D~~ip~fGFGa~~~~---~~~--vF~~~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~---  239 (460)
                      ||+||+||+|||||+.+.   .++  +|+|+|.|++|+|++|||+||++++|+|+|+|||+|||||++|+++|+++.   
T Consensus       332 ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~  411 (529)
T KOG1327|consen  332 YDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTA  411 (529)
T ss_pred             cCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCC
Confidence            999999999999999664   344  456778999999999999999999999999999999999999999999986   


Q ss_pred             CceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCCCCCccccccCCCCCc-------cccce
Q 012592          240 GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPA-------RAFDN  312 (460)
Q Consensus       240 ~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~lDd~~~~-------R~~Dn  312 (460)
                      ++||||||||||+|||            |++|++|||.||++|||||||||||+||++|++||++++.       |.|||
T Consensus       412 ~qY~VLlIitDG~vTd------------m~~T~~AIV~AS~lPlSIIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~rD~  479 (529)
T KOG1327|consen  412 GQYHVLLIITDGVVTD------------MKETRDAIVSASDLPLSIIIVGVGDADFDMMRELDGDDPKLRSPGRIAERDN  479 (529)
T ss_pred             cceEEEEEEeCCcccc------------HHHHHHHHHhhccCCeEEEEEEeCCCCHHHHHHhhcCCcccccccccccccc
Confidence            8999999999999997            9999999999999999999999999999999999998776       78999


Q ss_pred             eeeeccccccccccccchhHHHHHHHHHHHhHHHHHHHHHh-cccccC
Q 012592          313 FQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEF-NILGAQ  359 (460)
Q Consensus       313 vqFV~f~~~~~~~~~~~~~~~~la~~~L~EIP~Q~~~~~~l-~~l~~r  359 (460)
                      ||||+|++|+.++.+.+.++++||+.+|||||+||++||++ |++.++
T Consensus       480 vQFV~f~~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~p~~  527 (529)
T KOG1327|consen  480 VQFVPFRDIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGILPKP  527 (529)
T ss_pred             eEeecHHHHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCCCCC
Confidence            99999999999888888899999999999999999999999 555543

>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium	Back alignment and domain information

>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines	Back alignment and domain information

>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts	Back alignment and domain information

>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>smart00327 VWA von Willebrand factor (vWF) type A domain	Back alignment and domain information

>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin)	Back alignment and domain information

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A	Back alignment and domain information

>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta	Back alignment and domain information

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell	Back alignment and domain information

>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional	Back alignment and domain information

>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A	Back alignment and domain information

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases	Back alignment and domain information

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A	Back alignment and domain information

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PHA02929 N1R/p28-like protein; Provisional	Back alignment and domain information

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation	Back alignment and domain information

>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions	Back alignment and domain information

>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology	Back alignment and domain information

>TIGR00599 rad18 DNA repair protein rad18	Back alignment and domain information

>PHA02926 zinc finger-like protein; Provisional	Back alignment and domain information

>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins	Back alignment and domain information

>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein	Back alignment and domain information

>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

>smart00504 Ubox Modified RING finger domain	Back alignment and domain information

>PF13768 VWA_3: von Willebrand factor type A domain	Back alignment and domain information

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A	Back alignment and domain information

>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions	Back alignment and domain information

>PF14634 zf-RING_5: zinc-RING finger domain	Back alignment and domain information

>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma	Back alignment and domain information

>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional	Back alignment and domain information

>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme	Back alignment and domain information

>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto)	Back alignment and domain information

>cd01477 vWA_F09G8-8_type VWA F09G8	Back alignment and domain information

>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration	Back alignment and domain information

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A	Back alignment and domain information

>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family	Back alignment and domain information

>smart00184 RING Ring finger	Back alignment and domain information

>PRK13685 hypothetical protein; Provisional	Back alignment and domain information

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]	Back alignment and domain information

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function	Back alignment and domain information

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B	Back alignment and domain information

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]	Back alignment and domain information

>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions	Back alignment and domain information

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd01458 vWA_ku Ku70/Ku80 N-terminal domain	Back alignment and domain information

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis	Back alignment and domain information

>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]	Back alignment and domain information

>PRK13406 bchD magnesium chelatase subunit D; Provisional	Back alignment and domain information

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins	Back alignment and domain information

>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain	Back alignment and domain information

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit	Back alignment and domain information

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger	Back alignment and domain information

>PRK10997 yieM hypothetical protein; Provisional	Back alignment and domain information

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00868 hCaCC calcium-activated chloride channel protein 1	Back alignment and domain information

>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown	Back alignment and domain information

>KOG3002 consensus Zn finger protein [General function prediction only]	Back alignment and domain information

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4	Back alignment and domain information

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]	Back alignment and domain information

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]	Back alignment and domain information

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]	Back alignment and domain information

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]	Back alignment and domain information

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B	Back alignment and domain information

>PF04641 Rtf2: Rtf2 RING-finger	Back alignment and domain information

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>COG5175 MOT2 Transcriptional repressor [Transcription]	Back alignment and domain information

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A	Back alignment and domain information

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C	Back alignment and domain information

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1	Back alignment and domain information

>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway	Back alignment and domain information

>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]	Back alignment and domain information

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		460
2yho_A		79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	1e-15
2ea5_A		68	Cell growth regulator with ring finger domain prot	2e-15
2ecg_A		75	Baculoviral IAP repeat-containing protein 4; BIRC4	4e-15
2vje_A		64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	8e-13
2vje_B		63	MDM4 protein; proto-oncogene, phosphorylation, alt	3e-12
3t6p_A		345	Baculoviral IAP repeat-containing protein 2; ring,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1bor_A		56	Transcription factor PML; proto-oncogene, nuclear	2e-05
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	3e-05
1g25_A		65	CDK-activating kinase assembly factor MAT1; ring f	3e-05
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	4e-05
1chc_A		68	Equine herpes virus-1 ring domain; viral protein;	9e-05
2ecn_A		70	Ring finger protein 141; RNF141, ring domain, zinc	1e-04
2ysl_A		73	Tripartite motif-containing protein 31; ring-type	1e-04
1jm7_A		112	BRCA1, breast cancer type 1 susceptibility protein	2e-04
2ea6_A		69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-04
2y1n_A		389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-04
3knv_A		141	TNF receptor-associated factor 2; cross-brace, alt	2e-04
3k1f_M		197	Transcription initiation factor IIB; RNA polymeras	2e-04
2d8t_A		71	Dactylidin, ring finger protein 146; RNF146, ring	3e-04
2xeu_A		64	Ring finger protein 4; transcription, zinc-finger,	5e-04
2ecw_A		85	Tripartite motif-containing protein 30; metal bind	5e-04
2ecv_A		85	Tripartite motif-containing protein 5; metal bindi	6e-04
3ng2_A		71	RNF4, snurf, ring finger protein 4; ring domain, E	7e-04
2yur_A		74	Retinoblastoma-binding protein 6; P53-associated c	9e-04

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79	Back alignment and structure

 Score = 70.9 bits (174), Expect = 1e-15
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 412 SDNHVCPICLTDPKDMAFG-CGHQTCC-GCGQDLDLCPICRSFIQTRIKLY 460
            +  +C +C  +  +  F  CGH  CC  C   L  CP+CRS ++    +Y
Sbjct: 16  KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66

PyMOL of 2yho

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68	Back alignment and structure

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75	Back alignment and structure

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64	Back alignment and structure

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63	Back alignment and structure

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56	Back alignment and structure

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78	Back alignment and structure

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66	Back alignment and structure

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68	Back alignment and structure

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70	Back alignment and structure

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73	Back alignment and structure

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112	Back alignment and structure

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69	Back alignment and structure

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389	Back alignment and structure

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141	Back alignment and structure

>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197	Back alignment and structure

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71	Back alignment and structure

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64	Back alignment and structure

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85	Back alignment and structure

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85	Back alignment and structure

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71	Back alignment and structure

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		460
2ea5_A		68	Cell growth regulator with ring finger domain prot	99.18
2ecg_A		75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.08
4ic3_A		74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.04
2ysl_A		73	Tripartite motif-containing protein 31; ring-type	98.99
2yho_A		79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.95
2d8t_A		71	Dactylidin, ring finger protein 146; RNF146, ring	98.9
2vje_B		63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.89
2ecn_A		70	Ring finger protein 141; RNF141, ring domain, zinc	98.88
2vje_A		64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.87
2djb_A		72	Polycomb group ring finger protein 6; PCGF6, ring	98.87
2ea6_A		69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.87
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	98.82
2egp_A		79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.81
2ecw_A		85	Tripartite motif-containing protein 30; metal bind	98.81
2csy_A		81	Zinc finger protein 183-like 1; ring finger protei	98.81
2yur_A		74	Retinoblastoma-binding protein 6; P53-associated c	98.8
2ecv_A		85	Tripartite motif-containing protein 5; metal bindi	98.79
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	98.78
3l11_A		115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.78
3t6p_A		345	Baculoviral IAP repeat-containing protein 2; ring,	98.76
2ect_A		78	Ring finger protein 126; metal binding protein, st	98.74
3ztg_A		92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.74
2ysj_A		63	Tripartite motif-containing protein 31; ring-type	98.73
2ct2_A		88	Tripartite motif protein 32; zinc-finger protein H	98.73
4ayc_A		138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.72
1bor_A		56	Transcription factor PML; proto-oncogene, nuclear	98.72
2ep4_A		74	Ring finger protein 24; zinc binding, ubiquitin, E	98.69
1t1h_A		78	Gspef-atpub14, armadillo repeat containing protein	98.67
3ng2_A		71	RNF4, snurf, ring finger protein 4; ring domain, E	98.67
2ecj_A		58	Tripartite motif-containing protein 39; TRIM39, ri	98.65
1chc_A		68	Equine herpes virus-1 ring domain; viral protein;	98.65
1wgm_A		98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.62
2xeu_A		64	Ring finger protein 4; transcription, zinc-finger,	98.61
2kiz_A		69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.59
1iym_A		55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.58
3fl2_A		124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.57
3lrq_A		100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.55
2kr4_A		85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.54
2kre_A		100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.53
2ckl_A		108	Polycomb group ring finger protein 4; BMI1, RING1B	98.52
1g25_A		65	CDK-activating kinase assembly factor MAT1; ring f	98.5
1x4j_A		75	Ring finger protein 38; structural genomics, NPPSF	98.48
1jm7_B		117	BARD1, BRCA1-associated ring domain protein 1; rin	98.47
2ecm_A		55	Ring finger and CHY zinc finger domain- containing	98.46
2ckl_B		165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.46
1jm7_A		112	BRCA1, breast cancer type 1 susceptibility protein	98.45
4hqf_A		281	Thrombospondin-related anonymous protein, trap; ma	98.44
2l0b_A		91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.43
1z6u_A		150	NP95-like ring finger protein isoform B; structura	98.42
2y43_A		99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.41
3hct_A		118	TNF receptor-associated factor 6; cross-brace, bet	98.41
2c2l_A		281	CHIP, carboxy terminus of HSP70-interacting protei	98.41
3knv_A		141	TNF receptor-associated factor 2; cross-brace, alt	98.39
1v87_A		114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.37
4hqo_A		266	Sporozoite surface protein 2; malaria, gliding mot	98.36
2y1n_A		389	E3 ubiquitin-protein ligase; ligase-transferase co	98.34
1rmd_A		116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.33
2yu4_A		94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.21
3n2n_F		185	Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho	98.21
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.19
1shu_X		182	Anthrax toxin receptor 2; alpha/beta rossmann fold	98.17
2ecl_A		81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.15
2xgg_A		178	Microneme protein 2; A/I domain, cell adhesion, hy	98.15
3ibs_A		218	Conserved hypothetical protein BATB; structural ge	98.15
1q0p_A		223	Complement factor B; VON willebrand factor, MAC-1,	98.14
4fx5_A		464	VON willebrand factor type A; structural genomics,	98.13
2f42_A		179	STIP1 homology and U-box containing protein 1; cha	98.11
3hcs_A		170	TNF receptor-associated factor 6; cross-brace, bet	98.1
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.01
1atz_A		189	VON willebrand factor; collagen-binding, hemostasi	98.0
1n3y_A		198	Integrin alpha-X; alpha/beta rossmann fold, cell a	97.98
1ijb_A		202	VON willebrand factor; dinucleotide-binding fold,	97.96
2odp_A		509	Complement C2; C3/C5 convertase, complement serin	97.94
2b2x_A		223	Integrin alpha-1; computational design, antibody-a	97.93
3htk_C		267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.92
1pt6_A		213	Integrin alpha-1; cell adhesion; 1.87A {Homo sapie	97.88
2x31_A		189	Magnesium-chelatase 60 kDa subunit; ligase, bacter	97.84
4b4t_W		268	RPN10, 26S proteasome regulatory subunit RPN10; hy	97.84
1rrk_A		497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	97.81
1mf7_A		194	Integrin alpha M; cell adhesion; 1.25A {Homo sapie	97.78
2x5n_A		192	SPRPN10, 26S proteasome regulatory subunit RPN10;	97.75
3hrz_D		741	Complement factor B; serine protease, glycosilated	97.73
1v7p_C		200	Integrin alpha-2; snake venom, C-type lectin, anta	97.69
3dpl_R		106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.69
1wim_A		94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.63
2d8s_A		80	Cellular modulator of immune recognition; C-MIR, m	97.59
4a0k_B		117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.56
3zqk_A		199	VON willebrand factor; blood clotting, adamts-13,	97.31
2bay_A		61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.14
1mjn_A		179	Integrin alpha-L; rossmann fold, immune system; 1.	97.06
1jey_A		609	KU70; double-strand DNA break repair, non-homologo	97.05
3k6s_A		1095	Integrin alpha-X; cell receptor, adhesion molecule	96.97
3vk6_A		101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	96.84
1jey_B		565	KU80; double-strand DNA break repair, non-homologo	96.48
1yvr_A		538	RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein,	96.22
2ct0_A		74	Non-SMC element 1 homolog; ring domain, structural	96.14
3k1l_B		381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	95.8
2nvo_A		535	RO sixty-related protein, RSR; alpha helical repea	95.24
1vyx_A		60	ORF K3, K3RING; zinc-binding protein, ring domain,	94.59
2ko5_A		99	Ring finger protein Z; lassa fever virus-Z, negati	93.55
2jun_A		101	Midline-1; B-BOX, TRIM, ring finger, alternative s	90.3
2iue_A		212	Pactolus I-domain; membrane protein, CD, ITC, limb	90.17
2ww8_A		893	RRGA, cell WALL surface anchor family protein; IGG	87.49

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

Probab=99.18  E-value=2e-11  Score=96.44  Aligned_cols=50  Identities=28%  Similarity=0.772  Sum_probs=45.5

Q ss_pred             CCCCCcccccccCCCccee-CCCCc-cchhhhhcCCCCCccccccccccccC
Q 012592          411 TSDNHVCPICLTDPKDMAF-GCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY  460 (460)
Q Consensus       411 l~e~~~CpICl~~~kdvv~-~CGH~-fC~~Ci~~l~~CPiCR~~I~~~irly  460 (460)
                      ..+...|+||++.++++++ +|||. ||..|+..+..||+||++|..++++|
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~   63 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALS   63 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCC
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEee
Confidence            4456899999999999665 99999 99999999999999999999999987

PyMOL of 2ea5

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A	Back alignment and structure

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A	Back alignment and structure

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*	Back alignment and structure

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A	Back alignment and structure

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B	Back alignment and structure

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}	Back alignment and structure

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}	Back alignment and structure

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}	Back alignment and structure

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B	Back alignment and structure

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}	Back alignment and structure

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C	Back alignment and structure

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2	Back alignment and structure

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}	Back alignment and structure

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1	Back alignment and structure

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2	Back alignment and structure

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}	Back alignment and structure

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}	Back alignment and structure

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1	Back alignment and structure

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}	Back alignment and structure

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}	Back alignment and structure

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}	Back alignment and structure

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B	Back alignment and structure

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A	Back alignment and structure

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A	Back alignment and structure

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B	Back alignment and structure

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A	Back alignment and structure

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}	Back alignment and structure

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}	Back alignment and structure

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}	Back alignment and structure

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A	Back alignment and structure

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2	Back alignment and structure

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}	Back alignment and structure

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1	Back alignment and structure

>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*	Back alignment and structure

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*	Back alignment and structure

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1	Back alignment and structure

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}	Back alignment and structure

>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*	Back alignment and structure

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}	Back alignment and structure

>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1	Back alignment and structure

>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}	Back alignment and structure

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C	Back alignment and structure

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}	Back alignment and structure

>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A	Back alignment and structure

>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1	Back alignment and structure

>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C	Back alignment and structure

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*	Back alignment and structure

>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1	Back alignment and structure

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}	Back alignment and structure

>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A	Back alignment and structure

>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}	Back alignment and structure

>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A	Back alignment and structure

>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G	Back alignment and structure

>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}	Back alignment and structure

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*	Back alignment and structure

>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A	Back alignment and structure

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A	Back alignment and structure

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}	Back alignment and structure

>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*	Back alignment and structure

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A	Back alignment and structure

>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...	Back alignment and structure

>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B	Back alignment and structure

>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*	Back alignment and structure

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}	Back alignment and structure

>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*	Back alignment and structure

>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A	Back alignment and structure

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}	Back alignment and structure

>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}	Back alignment and structure

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3	Back alignment and structure

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}	Back alignment and structure

>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}	Back alignment and structure

>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		460
d1fbva4		79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	9e-09
d1bora_		56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-06
d1chca_		68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	6e-06
d1vyxa_		60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	8e-05
d1g25a_		65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-04
d1rmda2		86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-04
d1jm7a_		103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-04
d1ur6b_		52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	5e-04
d2baya1		56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	6e-04
d1iyma_		55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	0.002

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79	Back information, alignment and structure


class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 9e-09
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 412 SDNHVCPICLTDPKDMAF-GCGHQTCCGC-----GQDLDLCPICRSFIQTRIKLY 460
           S   +C IC  + KD+    CGH  C  C       +   CP CR  I+    + 
Sbjct: 21  STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75

PyMOL of d1fbva4

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52	Back information, alignment and structure

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		460
d1bora_		56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.81
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	98.66
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	98.65
d2c2la2		80	STIP1 homology and U box-containing protein 1, STU	98.59
d1jm7a_		103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.56
d1t1ha_		78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.55
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.55
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.55
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.48
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	98.46
d2baya1		56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.4
d1shux_		181	Capillary morphogenesis protein 2 domain {Human (H	98.35
d1wgma_		98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.15
d1v87a_		114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.14
d1q0pa_		209	Complement factor B domain {Human (Homo sapiens) [	97.92
d1jeya2		220	Ku70 subunit N-terminal domain {Human (Homo sapien	97.84
d3dplr1		88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.83
d1atza_		184	von Willebrand factor A3 domain, vWA3 {Human (Homo	97.7
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.68
d1v7pc_		193	Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId	97.51
d1mf7a_		194	Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub	97.48
d1pt6a_		192	Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId	97.38
d1ijba_		202	von Willebrand factor A1 domain, vWA1 {Human (Homo	97.16
d1n3ya_		189	Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI	97.0
d1jeyb2		236	Ku80 subunit N-terminal domain {Human (Homo sapien	96.95
d1wima_		94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	96.93
d1yvra2		174	60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c	96.88
d1mjna_		179	Integrin CD11a/CD18 (Leukocyte function associated	96.51

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=9.3e-10  Score=82.29  Aligned_cols=43  Identities=28%  Similarity=0.617  Sum_probs=37.5

Q ss_pred             CCCcccccccCCCc-ceeCCCCccchhhhhcCC-CCCcccccccc
Q 012592          413 DNHVCPICLTDPKD-MAFGCGHQTCCGCGQDLD-LCPICRSFIQT  455 (460)
Q Consensus       413 e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l~-~CPiCR~~I~~  455 (460)
                      +.+.|+||++.+++ ++++|||.||..|+.++. .||+||+++..
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcCCCcCcCCCCcccC
Confidence            34699999999999 566999999999998774 89999998864

PyMOL of d1bora_

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure

>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure

>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure