Citrus Sinensis ID: 012651

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
MKLAREVDPTGTVHLLSSVVKLYILCRKLSSNLILSYKLIERTVAGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR
cccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccEEEcccccccccccHHHHHHHcccccccccEEEEEcccHHHHHccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
cccccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccEEEEEEEccccccccccHHHHHcccEEEccccEEEEEEccHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
mklarevdptgTVHLLSSVVKLYILCRKLSSNLILSYKLIERtvagertfgvltkldlmdkgtnaldvlegrsyrlqhpwvgivnrsqadinRNIDMIVARRKEreyfatspdyghlagKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDhlgrpiavdAGAQLYTILELCRAFDRIFKEhldggrpggdriygvfdnqlpaalrklpfdrhlsLQNVKKVVSeadgyqphliapeqGYRRLIEGslsyfrgpaeasADAVHFVLKELVRKSigetqelkrfpTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLPQevekagnpgnsgntasqavdrysdghfrrigsNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLgqlldedpAMMERRLQCAKRLELYKAARDEidsvswar
mklarevdptgtvhLLSSVVKLYILCRKLSSNLILSYKLiertvagertfgvltkldlmdkGTNALDVLEGrsyrlqhpwvgivnrsqadinrNIDMIVARRKEREYFatspdyghlAGKMGSEYLAKLLSKHLESVirsripsitSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSigetqelkrfptLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEkagnpgnsgntasqAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKaardeidsvswar
MKLAREVDPTGTVHLLSSVVKLYILCRKLSSNLILSYKLIERTVAGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQaeiaaaanealeRFRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR
**********GTVHLLSSVVKLYILCRKLSSNLILSYKLIERTVAGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKL**************************GHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLG*L***********LQCAKRLELYK*************
MKLAREVDPTGTVHLLSSVVKLYILCRKLSSNLILSYKLIERTVAGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIV***************ARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD**************YTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWA*
*********TGTVHLLSSVVKLYILCRKLSSNLILSYKLIERTVAGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR
MKLAREVDPTGTVHLLSSVVKLYILCRKLSSNLILSYKLIERTVAGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLP*******************VDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWA*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKLAREVDPTGTVHLLSSVVKLYILCRKLSSNLILSYKLIERTVAGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query459 2.2.26 [Sep-21-2011]
Q9FNX5624 Dynamin-related protein 1 yes no 0.904 0.665 0.808 0.0
Q8LF21614 Dynamin-related protein 1 no no 0.915 0.684 0.719 0.0
Q8S3C9612 Dynamin-related protein 1 no no 0.980 0.735 0.671 0.0
Q39828610 Dynamin-related protein 5 no no 0.891 0.670 0.640 1e-168
Q39821610 Dynamin-related protein 1 no no 0.891 0.670 0.633 1e-167
P42697610 Dynamin-related protein 1 no no 0.891 0.670 0.636 1e-165
Q84XF3610 Dynamin-related protein 1 no no 0.888 0.668 0.637 1e-165
Q9SE83 914 Dynamin-2A OS=Arabidopsis no no 0.629 0.316 0.339 7e-41
Q9LQ55 920 Dynamin-2B OS=Arabidopsis no no 0.629 0.314 0.333 3e-40
P54861 757 Dynamin-related protein D yes no 0.620 0.376 0.325 3e-37
>sp|Q9FNX5|DRP1E_ARATH Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1 Back     alignment and function desciption
 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/417 (80%), Positives = 384/417 (92%), Gaps = 2/417 (0%)

Query: 45  AGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 104
            GERTFGVLTKLDLMDKGTNAL+VLEGRSYRLQHPWVGIVNRSQADIN+N+DM++ARRKE
Sbjct: 208 TGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMMLARRKE 267

Query: 105 REYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLG 164
           REYF TSPDYGHLA KMGSEYLAKLLSKHLESVIR+RIPSI SLINKSIEELE E+D +G
Sbjct: 268 REYFDTSPDYGHLASKMGSEYLAKLLSKHLESVIRTRIPSILSLINKSIEELERELDRMG 327

Query: 165 RPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHL 224
           RP+AVDAGAQLYTILE+CRAFD+IFKEHLDGGRPGGDRIYGVFDNQLPAAL+KLPFDRHL
Sbjct: 328 RPVAVDAGAQLYTILEMCRAFDKIFKEHLDGGRPGGDRIYGVFDNQLPAALKKLPFDRHL 387

Query: 225 SLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSI 284
           SLQ+VKK+VSEADGYQPHLIAPEQGYRRLIEG+L YFRGPAEAS DAVH+VLKELVRKSI
Sbjct: 388 SLQSVKKIVSEADGYQPHLIAPEQGYRRLIEGALGYFRGPAEASVDAVHYVLKELVRKSI 447

Query: 285 GETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEK 344
            ET+ELKRFP+LQ E+AAAAN +LE+FR+E +K+VIRLVDME++YLT EFFRKLPQE+E+
Sbjct: 448 SETEELKRFPSLQVELAAAANSSLEKFREESKKSVIRLVDMESAYLTAEFFRKLPQEIER 507

Query: 345 --AGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAK 402
               +   + + +S  +D+Y DGHFRRI SNVS+YV MVS+TLR TIPKA VYCQVR+AK
Sbjct: 508 PVTNSKNQTASPSSATLDQYGDGHFRRIASNVSAYVNMVSDTLRNTIPKACVYCQVRQAK 567

Query: 403 LSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR 459
           L+LLN+FY+QI ++E KQLGQLLDEDPA+M+RRL+CAKRLELYK ARDEID+V+W R
Sbjct: 568 LALLNYFYSQISKREGKQLGQLLDEDPALMDRRLECAKRLELYKKARDEIDAVAWVR 624
Microtubule-associated force-producing protein that is targeted to the tubulo-vesicular network of the forming cell plate during cytokinesis. Plays also a major role in plasma membrane maintenance and cell wall integrity with an implication in vesicular trafficking, polar cell expansion, and other aspects of plant growth and development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LF21|DRP1C_ARATH Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2 Back     alignment and function description
>sp|Q8S3C9|DRP1D_ARATH Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2 Back     alignment and function description
>sp|Q39828|SDL5A_SOYBN Dynamin-related protein 5A OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|Q39821|SDLCA_SOYBN Dynamin-related protein 12A OS=Glycine max PE=1 SV=1 Back     alignment and function description
>sp|P42697|DRP1A_ARATH Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3 Back     alignment and function description
>sp|Q84XF3|DRP1B_ARATH Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1 Back     alignment and function description
>sp|Q9SE83|DRP2A_ARATH Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2 Back     alignment and function description
>sp|Q9LQ55|DRP2B_ARATH Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2 Back     alignment and function description
>sp|P54861|DNM1_YEAST Dynamin-related protein DNM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DNM1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query459
225453246 619 PREDICTED: dynamin-related protein 1E is 0.901 0.668 0.889 0.0
359489239 602 PREDICTED: dynamin-related protein 1E is 0.901 0.687 0.889 0.0
147803428 631 hypothetical protein VITISV_030342 [Viti 0.901 0.656 0.886 0.0
356520720 618 PREDICTED: dynamin-related protein 1E-li 0.897 0.666 0.879 0.0
356520724 598 PREDICTED: dynamin-related protein 1E-li 0.897 0.688 0.879 0.0
449432338 621 PREDICTED: dynamin-related protein 1E-li 0.997 0.737 0.804 0.0
255571115 618 dynamin, putative [Ricinus communis] gi| 0.993 0.737 0.820 0.0
356504503 618 PREDICTED: dynamin-related protein 1E-li 0.897 0.666 0.867 0.0
356504507 598 PREDICTED: dynamin-related protein 1E-li 0.897 0.688 0.867 0.0
224067411 614 predicted protein [Populus trichocarpa] 0.891 0.666 0.865 0.0
>gi|225453246|ref|XP_002265511.1| PREDICTED: dynamin-related protein 1E isoform 1 [Vitis vinifera] gi|297734680|emb|CBI16731.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/415 (88%), Positives = 393/415 (94%), Gaps = 1/415 (0%)

Query: 45  AGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 104
           +GERTFGVLTKLDLMDKGTNAL+VLEGRSYRLQHPWVGIVNRSQADIN+N+DMIVARRKE
Sbjct: 206 SGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIVARRKE 265

Query: 105 REYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLG 164
           REYFATSPDYGHLA KMGSEYLAKLLSKHLE+VIR+RIPSITSLINKSI+ELESEMDHLG
Sbjct: 266 REYFATSPDYGHLASKMGSEYLAKLLSKHLETVIRARIPSITSLINKSIDELESEMDHLG 325

Query: 165 RPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHL 224
           RPIAVDAGAQLYTILELCRAFD IFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHL
Sbjct: 326 RPIAVDAGAQLYTILELCRAFDCIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHL 385

Query: 225 SLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSI 284
           SLQNV+K+VSEADGYQPHLIAPEQGYRRLIEGSL+YFRGPAEAS DAVHFVLKELVRKSI
Sbjct: 386 SLQNVRKIVSEADGYQPHLIAPEQGYRRLIEGSLNYFRGPAEASVDAVHFVLKELVRKSI 445

Query: 285 GETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEK 344
           GETQELKRFPTLQAEI+AA  E+LERFRD+ +KTVIRLV+MEASYLTVEFFRKLPQEVEK
Sbjct: 446 GETQELKRFPTLQAEISAATGESLERFRDDSKKTVIRLVEMEASYLTVEFFRKLPQEVEK 505

Query: 345 AGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLS 404
            GNP   GN A+  VDRY++GHFRRI SNVSSYV MVS+TLR TIPKA+V+CQVREAK S
Sbjct: 506 VGNPAG-GNPAASTVDRYTEGHFRRIASNVSSYVNMVSDTLRNTIPKAVVHCQVREAKQS 564

Query: 405 LLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR 459
           LLN FYTQIG+KE KQL Q+LDEDPA+MERR QCAKRLELYKAARDEIDSVSW R
Sbjct: 565 LLNLFYTQIGKKEGKQLSQMLDEDPALMERRQQCAKRLELYKAARDEIDSVSWVR 619

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359489239|ref|XP_002265553.2| PREDICTED: dynamin-related protein 1E isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147803428|emb|CAN71045.1| hypothetical protein VITISV_030342 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356520720|ref|XP_003529008.1| PREDICTED: dynamin-related protein 1E-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356520724|ref|XP_003529010.1| PREDICTED: dynamin-related protein 1E-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|449432338|ref|XP_004133956.1| PREDICTED: dynamin-related protein 1E-like [Cucumis sativus] gi|449515538|ref|XP_004164806.1| PREDICTED: dynamin-related protein 1E-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255571115|ref|XP_002526508.1| dynamin, putative [Ricinus communis] gi|223534183|gb|EEF35899.1| dynamin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356504503|ref|XP_003521035.1| PREDICTED: dynamin-related protein 1E-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356504507|ref|XP_003521037.1| PREDICTED: dynamin-related protein 1E-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|224067411|ref|XP_002302482.1| predicted protein [Populus trichocarpa] gi|222844208|gb|EEE81755.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query459
TAIR|locus:2101482624 DL1E "DYNAMIN-like 1E" [Arabid 0.932 0.685 0.775 1.6e-182
TAIR|locus:2006777614 DL1C "DYNAMIN-like 1C" [Arabid 0.893 0.667 0.754 3.3e-171
TAIR|locus:2042371612 DL1D "DYNAMIN-like 1D" [Arabid 0.891 0.668 0.727 4.5e-165
TAIR|locus:2076780610 DL1B "DYNAMIN-like 1B" [Arabid 0.888 0.668 0.628 1.6e-145
TAIR|locus:2165805610 DL1 "dynamin-like protein" [Ar 0.901 0.678 0.620 1.6e-145
UNIPROTKB|Q39821610 Q39821 "Dynamin-related protei 0.984 0.740 0.582 2.2e-144
TAIR|locus:2202847 920 DL3 "dynamin-like 3" [Arabidop 0.673 0.335 0.324 2.4e-46
TAIR|locus:2012763 914 ADL6 "dynamin-like protein 6" 0.675 0.339 0.313 2.9e-46
SGD|S000003924 757 DNM1 "Dynamin-related GTPase i 0.616 0.373 0.324 7.3e-45
ASPGD|ASPL0000044708 794 AN8874 [Emericella nidulans (t 0.540 0.312 0.335 5.8e-43
TAIR|locus:2101482 DL1E "DYNAMIN-like 1E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1746 (619.7 bits), Expect = 1.6e-182, Sum P(2) = 1.6e-182
 Identities = 335/432 (77%), Positives = 383/432 (88%)

Query:    30 SSNLILSYKLIERTVAGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQA 89
             +S+ I   K ++ T  GERTFGVLTKLDLMDKGTNAL+VLEGRSYRLQHPWVGIVNRSQA
Sbjct:   195 TSDAIKLAKDVDPT--GERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQA 252

Query:    90 DINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLI 149
             DIN+N+DM++ARRKEREYF TSPDYGHLA KMGSEYLAKLLSKHLESVIR+RIPSI SLI
Sbjct:   253 DINKNVDMMLARRKEREYFDTSPDYGHLASKMGSEYLAKLLSKHLESVIRTRIPSILSLI 312

Query:   150 NKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDN 209
             NKSIEELE E+D +GRP+AVDAGAQLYTILE+CRAFD+IFKEHLDGGRPGGDRIYGVFDN
Sbjct:   313 NKSIEELERELDRMGRPVAVDAGAQLYTILEMCRAFDKIFKEHLDGGRPGGDRIYGVFDN 372

Query:   210 QLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASA 269
             QLPAAL+KLPFDRHLSLQ+VKK+VSEADGYQPHLIAPEQGYRRLIEG+L YFRGPAEAS 
Sbjct:   373 QLPAALKKLPFDRHLSLQSVKKIVSEADGYQPHLIAPEQGYRRLIEGALGYFRGPAEASV 432

Query:   270 DAVHFVLKELVRKSIGETQELKRFPTLQXXXXXXXXXXXXRFRDEGRKTVIRLVDMEASY 329
             DAVH+VLKELVRKSI ET+ELKRFP+LQ            +FR+E +K+VIRLVDME++Y
Sbjct:   433 DAVHYVLKELVRKSISETEELKRFPSLQVELAAAANSSLEKFREESKKSVIRLVDMESAY 492

Query:   330 LTVEFFRKLPQEVEK-AGNPGN-SGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRT 387
             LT EFFRKLPQE+E+   N  N + + +S  +D+Y DGHFRRI SNVS+YV MVS+TLR 
Sbjct:   493 LTAEFFRKLPQEIERPVTNSKNQTASPSSATLDQYGDGHFRRIASNVSAYVNMVSDTLRN 552

Query:   388 TIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKA 447
             TIPKA VYCQVR+AKL+LLN+FY+QI ++E KQLGQLLDEDPA+M+RRL+CAKRLELYK 
Sbjct:   553 TIPKACVYCQVRQAKLALLNYFYSQISKREGKQLGQLLDEDPALMDRRLECAKRLELYKK 612

Query:   448 ARDEIDSVSWAR 459
             ARDEID+V+W R
Sbjct:   613 ARDEIDAVAWVR 624
GO:0003924 "GTPase activity" evidence=IEA;ISS
GO:0005525 "GTP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0016192 "vesicle-mediated transport" evidence=ISS
GO:0005773 "vacuole" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005886 "plasma membrane" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0050832 "defense response to fungus" evidence=RCA;IMP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
TAIR|locus:2006777 DL1C "DYNAMIN-like 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042371 DL1D "DYNAMIN-like 1D" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076780 DL1B "DYNAMIN-like 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165805 DL1 "dynamin-like protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q39821 Q39821 "Dynamin-related protein 12A" [Glycine max (taxid:3847)] Back     alignment and assigned GO terms
TAIR|locus:2202847 DL3 "dynamin-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012763 ADL6 "dynamin-like protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000003924 DNM1 "Dynamin-related GTPase involved in mitochondrial organization" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ASPGD|ASPL0000044708 AN8874 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FNX5DRP1E_ARATHNo assigned EC number0.80810.90410.6650yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_II1217
hypothetical protein (614 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
pfam01031296 pfam01031, Dynamin_M, Dynamin central region 1e-88
cd08771278 cd08771, DLP_1, Dynamin_like protein family includ 2e-27
smart0030292 smart00302, GED, Dynamin GTPase effector domain 2e-26
pfam0221290 pfam02212, GED, Dynamin GTPase effector domain 8e-25
smart00053240 smart00053, DYNc, Dynamin, GTPase 7e-11
COG0699546 COG0699, COG0699, Predicted GTPases (dynamin-relat 1e-04
>gnl|CDD|216255 pfam01031, Dynamin_M, Dynamin central region Back     alignment and domain information 
 Score =  272 bits (697), Expect = 1e-88
 Identities = 89/295 (30%), Positives = 140/295 (47%), Gaps = 13/295 (4%)

Query: 65  ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSE 124
           A+D+LE + Y L+  +VG+VNRSQ DIN    +  A   ER +F   P Y  LA + G+ 
Sbjct: 1   AVDILENKVYPLKLGYVGVVNRSQQDINDKKSIKEALEDERAFFENHPHYRTLAERCGTP 60

Query: 125 YLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRA 184
           YLAK L++ L + IR  +P + S INK ++E E E++  G     D   +   +L+L  A
Sbjct: 61  YLAKKLNQELVNHIRKSLPDLKSQINKKLQETEKELERYGDDPPEDPAEKGAFLLDLITA 120

Query: 185 FDRIFKEHLDGGRP--------GGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEA 236
           F++ FK  +DG           GG RI  +F    P  L+ +     LS + ++  +   
Sbjct: 121 FNQDFKNLIDGEEDDLSTNELSGGARIRYIFHEWFPKLLKSIDPFEKLSDEEIRTAIRNY 180

Query: 237 DGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTL 296
            G +  L  PE+ +  L++  +     PA    D V+  L+ +  K    ++EL RFP L
Sbjct: 181 RGRRLPLFVPEKAFELLVKKQIKRLEEPALKCVDLVYEELRRIFLKIA--SKELSRFPNL 238

Query: 297 QAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTV---EFFRKLPQEVEKAGNP 348
           +  I     + L    +   K V  L+DME +Y+     +F   L    +K    
Sbjct: 239 KEAIKEVVEDILREQLEPTEKMVRDLIDMELAYINTNHPDFIGGLQAVKKKEEEE 293

This region lies between the GTPase domain, see pfam00350, and the pleckstrin homology (PH) domain, see pfam00169. Length = 296
>gnl|CDD|206738 cd08771, DLP_1, Dynamin_like protein family includes dynamins and Mx proteins Back     alignment and domain information
>gnl|CDD|128597 smart00302, GED, Dynamin GTPase effector domain Back     alignment and domain information
>gnl|CDD|202159 pfam02212, GED, Dynamin GTPase effector domain Back     alignment and domain information
>gnl|CDD|197491 smart00053, DYNc, Dynamin, GTPase Back     alignment and domain information
>gnl|CDD|223771 COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 459
KOG0446657 consensus Vacuolar sorting protein VPS1, dynamin, 100.0
PF01031295 Dynamin_M: Dynamin central region; InterPro: IPR00 100.0
PF0221292 GED: Dynamin GTPase effector domain; InterPro: IPR 99.83
smart0030292 GED Dynamin GTPase effector domain. 99.82
smart00053240 DYNc Dynamin, GTPase. Large GTPases that mediate v 99.75
KOG0447980 consensus Dynamin-like GTP binding protein [Genera 99.46
COG0699546 Predicted GTPases (dynamin-related) [General funct 98.43
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=8e-69  Score=573.40  Aligned_cols=453  Identities=34%  Similarity=0.442  Sum_probs=401.5

Q ss_pred             ccCCCCCChhhHHHHHHHHHHHHhcCC------CCCcHHHHH-----HHHhcCCCCCccceeccCCCccCCcchHHHhHh
Q 012651            2 KLAREVDPTGTVHLLSSVVKLYILCRK------LSSNLILSY-----KLIERTVAGERTFGVLTKLDLMDKGTNALDVLE   70 (459)
Q Consensus         2 ~v~~~~q~~~~~~~V~~lv~~Yi~~~~------~p~n~~i~~-----~a~~vDp~g~RTiGVlTK~D~~d~g~~~~~il~   70 (459)
                      +||+++||+++..+|++|+++||+++.      +|+|+++++     .|++|||.|.||||||||.|+||+||+++++|.
T Consensus       144 kvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~  223 (657)
T KOG0446|consen  144 KVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLV  223 (657)
T ss_pred             ccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeec
Confidence            799999999999999999999999985      589988866     489999999999999999999999999999999


Q ss_pred             CCccccCCCEEEEEcCChhhhhccccHHHHHHHHHHHhccCCCCCCccCCCChHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 012651           71 GRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLIN  150 (459)
Q Consensus        71 ~~~~~l~lG~~~v~nr~~~d~~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~  150 (459)
                      |+.+++++||++|+||+|+||+.+.++.+|+.+|..||.+||.|+.+..++|+++|+..|+..|..||+.+||.|+..|+
T Consensus       224 g~~~~l~~g~v~vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~  303 (657)
T KOG0446|consen  224 GRPITLKVGYVGVVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKIN  303 (657)
T ss_pred             CCccccccceeeeeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhccCC--------CCcchhhhhHhhhHHHHhccCCccc
Q 012651          151 KSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGR--------PGGDRIYGVFDNQLPAALRKLPFDR  222 (459)
Q Consensus       151 ~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~--------~g~~ri~~~f~~~f~~~~~~~~~~~  222 (459)
                      .++.+.+.+|..||.  +++.......++.+++.|+..+...+.|..        +||+|++++|++.|+..+..+++.+
T Consensus       304 ~~~~~~~~el~~~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~  381 (657)
T KOG0446|consen  304 KLLEKYQDELNRIGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDR  381 (657)
T ss_pred             HHHHHHHHHHHHhcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcch
Confidence            999999999999996  222233344578888899888888887762        5789999999999999999999999


Q ss_pred             cCCchhHHHHhhhhcCCCCCCCCChhHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcchhcccCchhHHHHHHH
Q 012651          223 HLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAA  302 (459)
Q Consensus       223 ~~~~~~i~~~i~~~~G~~p~~f~p~~~~~~li~~~i~~w~~pa~~~~~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~v~~  302 (459)
                      .+...+|++++.+++|++|++|.|+.+|+.+++++++.+++|+.+|++.|++++..++.++...+ .+.+||.|+.++.+
T Consensus       382 ~~~~~~i~~~i~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~-~l~rfp~l~~~~~~  460 (657)
T KOG0446|consen  382 KLLGQNIEKLVSEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRAT-ELKRFPVLYSELVE  460 (657)
T ss_pred             hhhHHHHHHHHHhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH-HHHHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988643 79999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCH---HHhhhchHH---HHh----------------hCCCCCC----CCCC-
Q 012651          303 AANEALERFRDEGRKTVIRLVDMEASYLTV---EFFRKLPQE---VEK----------------AGNPGNS----GNTA-  355 (459)
Q Consensus       303 ~~~~~L~~~~~~~~~~v~~li~~E~~~~~~---d~~~~~~~~---~~k----------------~~~~~~~----~~~~-  355 (459)
                      ++.+++.++.++++++|.++++||.+|+||   ||+....+.   ...                .+.+...    ..+. 
T Consensus       461 ~~~~~~~~~~~~t~~~v~~~i~~e~~yinT~h~df~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (657)
T KOG0446|consen  461 IASSLIAEGLDETKKAVKNLIDLEQSYLNTDHPDFRSLTDSALSSVTSPSIAAMKLISAQLLKEELGECNSALKAIKNAV  540 (657)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcChhhhhhHHHHHHHhhcccccccccccccccccccccccchhhhhcchh
Confidence            999999999999999999999999999987   454432112   111                0111100    0000 


Q ss_pred             -------CCcc-------cCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHH
Q 012651          356 -------SQAV-------DRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQL  421 (459)
Q Consensus       356 -------~~~~-------~~~~~~~~~~i~~~l~aYy~ia~kr~~D~Vp~~I~~~Lv~~~~~~l~~~l~~~L~~~~~~~~  421 (459)
                             +..+       +.....+++.+..++.+||.+++++++|+||++|+|+|++.+.+.|+.+|+..|+. +.+.+
T Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~-~~~~~  619 (657)
T KOG0446|consen  541 GSIRLDPSDIVLSRALVLKKRECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYA-GDEQL  619 (657)
T ss_pred             hhhhhcccchhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHH
Confidence                   0000       11112345788899999999999999999999999999999999999999999998 36889


Q ss_pred             hhhhCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 012651          422 GQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWA  458 (459)
Q Consensus       422 ~~Ll~E~~~i~~~R~~L~~~~~~L~~A~~~L~~i~~~  458 (459)
                      ++|+.|+|.++.+|+.+++++++|++|+.++..+.|+
T Consensus       620 ~~ll~E~~~i~~~R~~~~~~l~~L~~a~~ii~~~~~~  656 (657)
T KOG0446|consen  620 ESLLKEDPRIKRRRELQQKRLLALQKALSILATVAQA  656 (657)
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999998876

>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles Back     alignment and domain information
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin Back     alignment and domain information
>smart00302 GED Dynamin GTPase effector domain Back     alignment and domain information
>smart00053 DYNc Dynamin, GTPase Back     alignment and domain information
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] Back     alignment and domain information
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
3t34_A360 Arabidopsis Thaliana Dynamin-Related Protein 1a (At 3e-50
3t34_A360 Arabidopsis Thaliana Dynamin-Related Protein 1a (At 3e-04
3snh_A 743 Crystal Structure Of Nucleotide-Free Human Dynamin1 1e-32
3zvr_A 772 Crystal Structure Of Dynamin Length = 772 2e-32
3zyc_A353 Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gm 6e-23
2aka_B299 Structure Of The Nucleotide-Free Myosin Ii Motor Do 4e-22
2x2e_A353 Dynamin Gtpase Dimer, Long Axis Form Length = 353 2e-21
3l43_A319 Crystal Structure Of The Dynamin 3 Gtpase Domain Bo 3e-20
1jwy_B315 Crystal Structure Of The Dynamin A Gtpase Domain Co 5e-18
3zys_B662 Human Dynamin 1 Deltaprd Polymer Stabilized With Gm 9e-10
3szr_A608 Crystal Structure Of Modified Nucleotide-Free Human 1e-09
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a) In Prefission State Length = 360 Back     alignment and structure 
Iteration: 1

 Score =  196 bits (497), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 86/124 (69%), Positives = 113/124 (91%)
Query: 45  AGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 104
           +G+RTFGVLTK+DLMDKGT+A+++LEGRS++L++PWVG+VNRSQADIN+N+DMI AR++E
Sbjct: 202 SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKRE 261
Query: 105 REYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLG 164
           REYF+ + +Y HLA KMGSE+LAK+LSKHLE VI+SRIP I SLINK++ ELE+E+  LG
Sbjct: 262 REYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLG 321
Query: 165 RPIA 168
           +PIA
Sbjct: 322 KPIA 325
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a) In Prefission State Length = 360 Back     alignment and structure
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1 Length = 743 Back     alignment and structure
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin Length = 772 Back     alignment and structure
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp Length = 353 Back     alignment and structure
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 299 Back     alignment and structure
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form Length = 353 Back     alignment and structure
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound With Gdp Length = 319 Back     alignment and structure
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 315 Back     alignment and structure
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp Length = 662 Back     alignment and structure
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa Length = 608 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
3szr_A608 Interferon-induced GTP-binding protein MX1; interf 3e-85
3zvr_A 772 Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito 4e-81
3zvr_A772 Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito 8e-23
3t34_A360 Dynamin-related protein 1A, linker, dynamin-relat 5e-54
2x2e_A353 Dynamin-1; nitration, hydrolase, membrane fission, 9e-48
1jwy_B315 Dynamin A GTPase domain; dynamin, GTPase, GDP, myo 2e-42
2aka_B299 Dynamin-1; fusion protein, GTPase domain, myosin, 1e-40
3ljb_A271 Interferon-induced GTP-binding protein MX1; four-h 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B Length = 608 Back     alignment and structure
 Score =  272 bits (696), Expect = 3e-85
 Identities = 71/420 (16%), Positives = 148/420 (35%), Gaps = 39/420 (9%)

Query: 45  AGERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 102
            G+RT G+LTK DL+DKGT    +DV+    + L+  ++ +  R Q +I   + +  A +
Sbjct: 213 EGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQ 272

Query: 103 KEREYFATSPDYGHLA--GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEM 160
           +E+ +F   P +  L   GK     LA+ L+  L + I   +P + + I ++ + +  E+
Sbjct: 273 REKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEEL 332

Query: 161 DHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRP-------GGDRIYGVFDNQLPA 213
              G  I  D   +++ +++   AF++     + G             R+   F      
Sbjct: 333 QKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTI 392

Query: 214 ALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVH 273
                     +  + ++K  ++A   +       + +  +++  +     PA      V 
Sbjct: 393 IENNFQEGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVT 452

Query: 274 FVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVE 333
            +++          +  + F  L     +   +       EG K +     ME       
Sbjct: 453 DMVRLAFTDVS--IKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIV---- 506

Query: 334 FFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAI 393
                                 +      +D     I  ++ +Y    S+ + + IP  I
Sbjct: 507 --------------------YGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLII 546

Query: 394 VYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEID 453
            +  ++     L       +  K+      LL E     ++R    +RL     AR  + 
Sbjct: 547 QFFMLQTYGQQLQKAMLQLLQDKD--TYSWLLKERSDTSDKRKFLKERLARLTQARRRLA 604
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A Length = 772 Back     alignment and structure
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A Length = 772 Back     alignment and structure
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* Length = 360 Back     alignment and structure
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A Length = 353 Back     alignment and structure
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* Length = 315 Back     alignment and structure
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* Length = 299 Back     alignment and structure
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens} Length = 271 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
3szr_A608 Interferon-induced GTP-binding protein MX1; interf 100.0
3zvr_A772 Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito 100.0
3ljb_A271 Interferon-induced GTP-binding protein MX1; four-h 100.0
3t34_A360 Dynamin-related protein 1A, linker, dynamin-relat 99.92
2x2e_A353 Dynamin-1; nitration, hydrolase, membrane fission, 99.89
1jwy_B315 Dynamin A GTPase domain; dynamin, GTPase, GDP, myo 99.48
2aka_B299 Dynamin-1; fusion protein, GTPase domain, myosin, 99.41
2j69_A695 Bacterial dynamin-like protein; FZO, FZL, GTPase, 87.37
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B Back     alignment and structure
Probab=100.00  E-value=8.4e-73  Score=609.78  Aligned_cols=426  Identities=18%  Similarity=0.266  Sum_probs=372.2

Q ss_pred             ccCCCCCChhhHHHHHHHHHHHHhcCC------CCC-----cHHHHHHHHhcCCCCCccceeccCCCccCCcch--HHHh
Q 012651            2 KLAREVDPTGTVHLLSSVVKLYILCRK------LSS-----NLILSYKLIERTVAGERTFGVLTKLDLMDKGTN--ALDV   68 (459)
Q Consensus         2 ~v~~~~q~~~~~~~V~~lv~~Yi~~~~------~p~-----n~~i~~~a~~vDp~g~RTiGVlTK~D~~d~g~~--~~~i   68 (459)
                      ++++.|++++....|.+|+++|++++.      +++     +......++++||.|.|||||+||+|++++|+.  ++++
T Consensus       159 ~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~  238 (608)
T 3szr_A          159 RVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDV  238 (608)
T ss_dssp             ----CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCC
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHH
Confidence            355899999999999999999999874      233     344566799999999999999999999999985  7899


Q ss_pred             HhCCccccCCCEEEEEcCChhhhhccccHHHHHHHHHHHhccCCCCCCcc--CCCChHHHHHHHHHHHHHHHHhhcHHHH
Q 012651           69 LEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLA--GKMGSEYLAKLLSKHLESVIRSRIPSIT  146 (459)
Q Consensus        69 l~~~~~~l~lG~~~v~nr~~~d~~~~~s~~~a~~~E~~fF~~~~~~~~~~--~~~G~~~L~~~L~~~L~~~i~~~LP~l~  146 (459)
                      +.|+.++|++|||+|+||+|+|++.+.|+++|++.|.+||++||||+.+.  +++||++|+.+|+++|.+||+++||.|+
T Consensus       239 l~~~~~~l~~g~~~v~nr~~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~  318 (608)
T 3szr_A          239 VRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLE  318 (608)
T ss_dssp             C--CCSCCSSCEECCCCSCTTCTTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCcccccCceEEEEecCchhhcccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999999999999999999999875  5999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCC---cchhhhhHhhhHHHHhccCCc---
Q 012651          147 SLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPG---GDRIYGVFDNQLPAALRKLPF---  220 (459)
Q Consensus       147 ~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~g---~~ri~~~f~~~f~~~~~~~~~---  220 (459)
                      .+|+.+|++++.||+.||+++++++.+++.||++++++|++.++++++|++..   +.+++..+++.|..+...+..   
T Consensus       319 ~~i~~~l~~~~~el~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  398 (608)
T 3szr_A          319 NQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQ  398 (608)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhccc
Confidence            99999999999999999999988888888899999999999999999998743   256777777666655433211   


Q ss_pred             -cccCCchhHHHHhhhhcCCCCCCCCChhHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcchhcccCchhHHHH
Q 012651          221 -DRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAE  299 (459)
Q Consensus       221 -~~~~~~~~i~~~i~~~~G~~p~~f~p~~~~~~li~~~i~~w~~pa~~~~~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~  299 (459)
                       .......+|++.+++++|+++++|.|+.+|+.++++|+++|++||..|++.|++.+..++..++.  .+|.+||+|+++
T Consensus       399 ~~~~~~~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~--~~f~rfp~L~~~  476 (608)
T 3szr_A          399 EGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRT  476 (608)
T ss_dssp             HHHHHHHHHHHHHHHHCCSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHH--HHHSSCHHHHHH
T ss_pred             ccchhHHHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHH
Confidence             11234678999999999999999999999999999999999999999999999999999998775  489999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHH-HhhhchHHHHhhCCCCCCCCCCCCcccCCCchHHHHHHHHHHHHH
Q 012651          300 IAAAANEALERFRDEGRKTVIRLVDMEASYLTVE-FFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYV  378 (459)
Q Consensus       300 v~~~~~~~L~~~~~~~~~~v~~li~~E~~~~~~d-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aYy  378 (459)
                      +.+++.++++++.++|+++|..+++||..||+.| +|..                         ....+.+|+.+|.|||
T Consensus       477 ~~~~i~~~~~~~~~~a~~~i~~li~mE~~~~~~d~~~~~-------------------------~~~~~~ei~~~l~sY~  531 (608)
T 3szr_A          477 AKSKIEDIRAEQEREGEKLIRLHFQMEQIVYGAFQSSSA-------------------------TDSSMEEIFQHLMAYH  531 (608)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------------------------CTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccC-------------------------CCccHHHHHHHHHHHH
Confidence            9999999999999999999999999999998765 3320                         0111357999999999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHhhhhCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012651          379 GMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVS  456 (459)
Q Consensus       379 ~ia~kr~~D~Vp~~I~~~Lv~~~~~~l~~~l~~~L~~~~~~~~~~Ll~E~~~i~~~R~~L~~~~~~L~~A~~~L~~i~  456 (459)
                      +||++||+|+|||+|+|+||+.+.+.|+.+|++.|+.  .+.+++||+|||+++++|+.|++++++|++|+++|..|.
T Consensus       532 ~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~--~~~~~~ll~E~~~~~~~R~~l~~~~~~L~~A~~~l~~~~  607 (608)
T 3szr_A          532 QEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQD--KDTYSWLLKERSDTSDKRKFLKERLARLTQARRRLAQFP  607 (608)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTC--HHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999995  478999999999999999999999999999999999874
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A Back     alignment and structure
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens} Back     alignment and structure
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* Back     alignment and structure
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A Back     alignment and structure
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* Back     alignment and structure
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* Back     alignment and structure
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 459
d1jwyb_306 c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc 2e-23
d2akab1299 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n 2e-22
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 97.6 bits (242), Expect = 2e-23
 Identities = 45/109 (41%), Positives = 67/109 (61%)

Query: 45  AGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 104
            G+RT GV+TKLDLMDKGT+A++VL GR   L   ++G++NRSQ DI     +  + + E
Sbjct: 197 EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256

Query: 105 REYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSI 153
             YF   P Y  +A + G+ YL+K L+K L   IR  +P +   ++K +
Sbjct: 257 ILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKML 305
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
d1jwyb_306 Dynamin G domain {Dictyostelium discoideum [TaxId: 99.85
d2akab1299 Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 99.84
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.85  E-value=1.4e-21  Score=190.95  Aligned_cols=150  Identities=35%  Similarity=0.488  Sum_probs=132.2

Q ss_pred             CCCCCChhhHHHHHHHHHHHHhcCCC-----------CCcHHHHHHHHhcCCCCCccceeccCCCccCCcchHHHhHhCC
Q 012651            4 AREVDPTGTVHLLSSVVKLYILCRKL-----------SSNLILSYKLIERTVAGERTFGVLTKLDLMDKGTNALDVLEGR   72 (459)
Q Consensus         4 ~~~~q~~~~~~~V~~lv~~Yi~~~~~-----------p~n~~i~~~a~~vDp~g~RTiGVlTK~D~~d~g~~~~~il~~~   72 (459)
                      +.++++......+.+|++.||++++.           ..+......++++||.|.||+||+||+|..+++.++..++.|.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~~~~~~~~~~l~~~  224 (306)
T d1jwyb_         145 PVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGR  224 (306)
T ss_dssp             -------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTS
T ss_pred             ccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEeccccccchhHHHHHHhCC
Confidence            44678888999999999999999741           2233345568999999999999999999999999999999999


Q ss_pred             ccccCCCEEEEEcCChhhhhccccHHHHHHHHHHHhccCCCCCCccCCCChHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 012651           73 SYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKS  152 (459)
Q Consensus        73 ~~~l~lG~~~v~nr~~~d~~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~  152 (459)
                      ..++.+||++++|+++.+...+.+++++.+.|..||.++|+|..+.+++|+.+|+.+|+++|.+||+++||.|+.+|+++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~f~~~~~~~~l~~r~Gi~~L~~~L~~~L~~~i~~~lP~i~~~i~~~  304 (306)
T d1jwyb_         225 VIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKM  304 (306)
T ss_dssp             SSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCceeeecCchhhccccCCHHHHHHHHHHHHhCCchhcchHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998889999999999999999999999999999999887


Q ss_pred             H
Q 012651          153 I  153 (459)
Q Consensus       153 l  153 (459)
                      |
T Consensus       305 L  305 (306)
T d1jwyb_         305 L  305 (306)
T ss_dssp             T
T ss_pred             h
Confidence            6
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure