Citrus Sinensis ID: 012673
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VYJ1 | 560 | 2-succinylbenzoate--CoA l | yes | no | 0.973 | 0.796 | 0.592 | 1e-155 | |
| Q4R4Z9 | 618 | Acyl-CoA synthetase famil | N/A | no | 0.727 | 0.538 | 0.282 | 7e-36 | |
| Q8VCW8 | 615 | Acyl-CoA synthetase famil | yes | no | 0.744 | 0.554 | 0.289 | 9e-36 | |
| Q499N5 | 615 | Acyl-CoA synthetase famil | yes | no | 0.740 | 0.551 | 0.295 | 3e-34 | |
| Q0P4F7 | 606 | Acyl-CoA synthetase famil | yes | no | 0.746 | 0.564 | 0.280 | 4e-34 | |
| Q96CM8 | 615 | Acyl-CoA synthetase famil | yes | no | 0.724 | 0.539 | 0.279 | 4e-33 | |
| A9VM74 | 481 | 2-succinylbenzoate--CoA l | no | no | 0.768 | 0.731 | 0.278 | 7e-33 | |
| Q5R9G9 | 615 | Acyl-CoA synthetase famil | yes | no | 0.724 | 0.539 | 0.274 | 2e-32 | |
| P23971 | 486 | 2-succinylbenzoate--CoA l | yes | no | 0.716 | 0.674 | 0.289 | 2e-32 | |
| O31826 | 549 | Putative acyl-CoA synthet | no | no | 0.764 | 0.637 | 0.256 | 2e-32 |
| >sp|Q8VYJ1|MENE_ARATH 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal OS=Arabidopsis thaliana GN=AAE14 PE=1 SV=1 | Back alignment and function desciption |
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Score = 549 bits (1415), Expect = e-155, Method: Compositional matrix adjust.
Identities = 276/466 (59%), Positives = 344/466 (73%), Gaps = 20/466 (4%)
Query: 1 MLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNK-RDMLTADILKGYSLRSLPFT 59
+LVTDE+ SW +++Q+ IPSL+W V + S+S+DF N+ LT ++LK +L T
Sbjct: 107 LLVTDETCVSWCIDVQNGDIPSLKWRVLMESTSTDFANELNQFLTTEMLKQRTLVPSLAT 166
Query: 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIG 119
++WA + AV+ICFTSGTTG PKGV ISH A I QSLAKIAI GYGEDDVYLHT+PL HIG
Sbjct: 167 YAWASDDAVVICFTSGTTGRPKGVTISHLAFITQSLAKIAIAGYGEDDVYLHTSPLVHIG 226
Query: 120 GLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKG 179
GLSSAMAMLMVGACHV +PKF++K+AL+ +EQ+ +T ITVPA+MADL + R K
Sbjct: 227 GLSSAMAMLMVGACHVLLPKFDAKTALQVMEQNHITCFITVPAMMADLIRVNRTTKNGAE 286
Query: 180 RDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
V+KILNGGG L SEL+KEA N FP A+++SAYGMTE SSLTFMTL+DPT E+
Sbjct: 287 NRGVRKILNGGGSLSSELLKEAVNIFPCARILSAYGMTEACSSLTFMTLHDPTQES---- 342
Query: 240 PQAFGNVTPNSVHQP-QGVCVGKPAPHVELKVCSD-GSSHVGRILTRGAHVMLRYWDQFL 297
VT ++QP QG CVGKPAPH+EL V D SS VG+ILTRG H MLRYW +
Sbjct: 343 ----FKVTYPLLNQPKQGTCVGKPAPHIELMVKLDEDSSRVGKILTRGPHTMLRYWGHQV 398
Query: 298 AKPSVST-----GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
A+ +V T E WLDTGDIG+ D+ GN+WL+GR NGRIK+GGENVYPEEVEAVL++H
Sbjct: 399 AQENVETSESRSNEAWLDTGDIGAFDEFGNLWLIGRSNGRIKTGGENVYPEEVEAVLVEH 458
Query: 353 PGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK 412
PGI+ VV+G+ + RL EMVVACVRL+E W WS D ++ LSSE L+ HCR +
Sbjct: 459 PGIVSAVVIGVIDTRLGEMVVACVRLQEKWIWS----DVENRKGSFQLSSETLKHHCRTQ 514
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458
NLTGFK P+ FV W K FPLT+TGK++RDEVRR+V+SH + + S+L
Sbjct: 515 NLTGFKIPKRFVRWEKQFPLTTTGKVKRDEVRRQVLSHFQIMTSSL 560
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Involved in the biosynthesis of phylloquinone (vitamin K1). Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA). Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 6 |
| >sp|Q4R4Z9|ACSF2_MACFA Acyl-CoA synthetase family member 2, mitochondrial OS=Macaca fascicularis GN=ACSF2 PE=2 SV=1 | Back alignment and function description |
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Score = 152 bits (383), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 188/403 (46%), Gaps = 70/403 (17%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHT-----------APLCH- 117
I FTSGTTGSPKG +SH ++ S +I+G + + LH +PL H
Sbjct: 263 IQFTSGTTGSPKGATLSHYNIVNNS----SILG---ERLKLHEKTPEQLRMILPSPLYHC 315
Query: 118 IGGLSSAMAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT 176
+G + M LM GA + P F K ALEA+ + + L P + D+ +
Sbjct: 316 LGSVGGTMMCLMYGATLILASPVFNGKKALEAISRERGSFLYGTPTMFVDILN----QPD 371
Query: 177 WKGRD--SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLE 234
+ D +++ + G P EL++ N L+ AYG TE S
Sbjct: 372 FSSYDISTMRGGVIAGSPAPPELIRAIINKINMKDLVVAYGTTENS-------------- 417
Query: 235 TPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV------GRILTRGAHV 288
P F N ++V Q + VG+ PH E ++ + + + G + RG V
Sbjct: 418 -----PVTFANFPEDTVEQ-KAESVGRIMPHTEARIMNMEAGMLAELNTPGELCIRGYCV 471
Query: 289 MLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV 348
ML YW + + W TGDI ++++ G +VGR I GGEN+YP E+E
Sbjct: 472 MLGYWGEPQKTGEAVDQDKWYRTGDIATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDF 531
Query: 349 LLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQH 408
HP + + VVG+ + R+ E + AC+RL++ + ++E ++
Sbjct: 532 FHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEE----------------TTAEEMKAF 575
Query: 409 CREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451
C+ K ++ FK PR ++++ +PLT++GKI++ ++R ++ HL
Sbjct: 576 CKGK-ISHFKIPR-YIVFVTNYPLTTSGKIQKFKLREQMERHL 616
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Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation. Macaca fascicularis (taxid: 9541) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q8VCW8|ACSF2_MOUSE Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1 | Back alignment and function description |
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Score = 151 bits (382), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 190/397 (47%), Gaps = 56/397 (14%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSL---AKIAIVGYGEDDVYL-HTAPLCH-IGGLSSA 124
I FTSGTTG+PKG +SH ++ S+ ++ + +++ L +PL H +G +
Sbjct: 260 IQFTSGTTGNPKGATLSHHNIVNNSMLIGQRLKMPTKTAEELRLVLPSPLYHCLGSVGGT 319
Query: 125 MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD-- 181
M +M GA + P F K ALEA+ + T L P + D+ + + D
Sbjct: 320 MVSMMHGATLLLSSPSFNGKKALEAISREKGTLLYGTPTMFVDILN----QPDFSSYDFT 375
Query: 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 241
S++ + G P EL++ N +L+ YG TE +S +TFM + TLE Q
Sbjct: 376 SIRGGVIAGSPAPPELIRAIINKMNMKELVVVYGTTE-NSPVTFMNFPEDTLE------Q 428
Query: 242 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV------GRILTRGAHVMLRYWDQ 295
G+V G+ PH E ++ + + + G + RG VM YW +
Sbjct: 429 KAGSV-------------GRIMPHTEAQIVNVETGELTNLNVPGELYIRGYCVMQGYWGE 475
Query: 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 355
+ W TGDI +D+ G +VGR I GGEN+YP E+E L+HP +
Sbjct: 476 PQKTFETVGQDKWYRTGDIALMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFLKHPQV 535
Query: 356 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 415
VVG+ + R+ E + AC+RL+ ++E ++ C+ K ++
Sbjct: 536 QEAQVVGVKDERMGEEICACIRLKSGET----------------TTAEEIKAFCKGK-IS 578
Query: 416 GFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452
FK PR ++++ + +PLT +GKI++ ++R ++ HLK
Sbjct: 579 HFKIPR-YIVFVEGYPLTISGKIQKFKLREQMEQHLK 614
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Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q499N5|ACSF2_RAT Acyl-CoA synthetase family member 2, mitochondrial OS=Rattus norvegicus GN=Acsf2 PE=2 SV=1 | Back alignment and function description |
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Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 118/399 (29%), Positives = 187/399 (46%), Gaps = 60/399 (15%)
Query: 70 ICFTSGTTGSPKGVVISH------SALIVQSLAKIAIVGYGEDDVYLHTAPLCH-IGGLS 122
I FTSGTTG+PKG +SH S LI Q L A E+ + PL H +G +
Sbjct: 260 IQFTSGTTGNPKGATLSHHNIVNNSNLIGQRLKMPAKTA--EELRMVLPCPLYHCLGSVG 317
Query: 123 SAMAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 181
M ++ GA + P F K ALEA+ + T L P + D+ + + D
Sbjct: 318 GTMVSVVHGATLLLSSPSFNGKKALEAISREKGTLLYGTPTMFVDILN----QPDFSSYD 373
Query: 182 --SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
+++ + G P EL++ + +L+ YG TE +S +TFM + TLE
Sbjct: 374 FTTIRGGVIAGSLAPPELIRAIISKMNMKELVVVYGTTE-NSPVTFMNFPEDTLE----- 427
Query: 240 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV------GRILTRGAHVMLRYW 293
Q G+V G+ PH E ++ + + + G + RG VM YW
Sbjct: 428 -QKAGSV-------------GRIMPHTEAQIVNMETGELTKLNMPGELCIRGYCVMQGYW 473
Query: 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 353
+ + W TGDI S+D+ G +VGR I GGEN+YP E+E +HP
Sbjct: 474 GEPQKTFETVGQDRWYRTGDIASMDEQGFCRIVGRSKDMIIRGGENIYPAELEDFFHKHP 533
Query: 354 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKN 413
+ VVG+ + R+ E + AC+RL+ +E E ++ C+ K
Sbjct: 534 QVQEAQVVGVKDDRMGEEICACIRLKSGETTTE----------------EEIKAFCKGK- 576
Query: 414 LTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452
++ FK PR ++++ + +PLT +GKI++ ++R ++ HLK
Sbjct: 577 ISHFKIPR-YIVFVEGYPLTVSGKIQKFKLREQMEQHLK 614
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Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q0P4F7|ACSF2_DANRE Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2 PE=2 SV=1 | Back alignment and function description |
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Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 110/392 (28%), Positives = 175/392 (44%), Gaps = 50/392 (12%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYG--EDDVYLHTAPLCH-IGGLSSAMA 126
I FTSGTTG PKG +SH ++ + +GY ++ PL H G + +
Sbjct: 253 IQFTSGTTGKPKGATLSHHNIVNNAYFTGMRIGYNWRKNVRICLPVPLYHCFGSVGGGVI 312
Query: 127 MLMVGACHVFIPK-FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKK 185
M + G +F ++ ++ L A+E+ T + P + D+ + K SV+
Sbjct: 313 MALYGTTVIFPSTGYDGRANLRAIEKEKCTFVYGTPTMYIDMLGQPDLAKF--DLSSVRG 370
Query: 186 ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 245
+ G P E+M++ N +++ YG TE S P F
Sbjct: 371 GIAAGSPCPPEVMRKILNVMGIKEMVIGYGTTENS-------------------PVTFCG 411
Query: 246 VTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV------GRILTRGAHVMLRYWDQFLAK 299
+S + + V VG +PH E KV + + G ++ RG VML YW
Sbjct: 412 FPVDSAER-KIVTVGCISPHTEAKVVDPTTGEIVPLGAQGELMIRGYCVMLEYWQDEEKT 470
Query: 300 PSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 359
T + W TGDI S+D + GR I GGEN+YP E+E L HP I+
Sbjct: 471 RECITKDRWYKTGDIASLDQFAYCKIEGRIKDLIIRGGENIYPAEIEQFLHTHPKILEAQ 530
Query: 360 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKA 419
VVG+ + R+ E V AC+RL+E + + E ++ +C+ K + +K
Sbjct: 531 VVGVKDERMGEEVCACIRLKEGQE----------------CTVEEIKAYCKGK-IAHYKV 573
Query: 420 PRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451
PR ++L+ + +PLT TGKI++ ++R L
Sbjct: 574 PR-YILFVQDYPLTITGKIQKHKLRERTEKQL 604
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Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation. Danio rerio (taxid: 7955) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q96CM8|ACSF2_HUMAN Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 184/404 (45%), Gaps = 72/404 (17%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTA-----------PLCH- 117
I FTSGTTGSPKG +SH ++ S I+G + + LH PL H
Sbjct: 260 IQFTSGTTGSPKGATLSHYNIVNNS----NILG---ERLKLHEKTPEQLRMILPNPLYHC 312
Query: 118 IGGLSSAMAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT 176
+G ++ M LM GA + P F K ALEA+ + T L P + D+ +
Sbjct: 313 LGSVAGTMMCLMYGATLILASPIFNGKKALEAISRERGTFLYGTPTMFVDILN----QPD 368
Query: 177 WKGRDSVKKILNG---GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTL 233
+ D + + G G P EL++ N L+ AYG TE S
Sbjct: 369 FSSYD-ISTMCGGVIAGSPAPPELIRAIINKINMKDLVVAYGTTENS------------- 414
Query: 234 ETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV------GRILTRGAH 287
P F + ++V Q + VG+ PH E ++ + + + G + RG
Sbjct: 415 ------PVTFAHFPEDTVEQ-KAESVGRIMPHTEARIMNMEAGTLAKLNTPGELCIRGYC 467
Query: 288 VMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEA 347
VML YW + + W TGD+ ++++ G +VGR I GGEN+YP E+E
Sbjct: 468 VMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELED 527
Query: 348 VLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQ 407
HP + + VVG+ + R+ E + AC+RL++ + + E ++
Sbjct: 528 FFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEE----------------TTVEEIKA 571
Query: 408 HCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451
C+ K ++ FK P+ ++++ +PLT +GKI++ ++R ++ HL
Sbjct: 572 FCKGK-ISHFKIPK-YIVFVTNYPLTISGKIQKFKLREQMERHL 613
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Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|A9VM74|MENE_BACWK 2-succinylbenzoate--CoA ligase OS=Bacillus weihenstephanensis (strain KBAB4) GN=menE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 199/410 (48%), Gaps = 58/410 (14%)
Query: 45 ADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYG 104
A++++G + ++ E A+ I +TSGTTG PKGV++++ ++ +G
Sbjct: 120 AEVMQGPKAEAF-IQEEFSLEEAMTIIYTSGTTGKPKGVILTYGNHWASAVGSSLNLGLR 178
Query: 105 EDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIM 164
+DD +L P+ H+GGLS M +M G + +PK+++ +A++ VT + V ++
Sbjct: 179 DDDCWLACMPMFHVGGLSLLMKNIMYGMRILLVPKYDANFIHKALQTRGVTIISVVSKML 238
Query: 165 ADLATLIRVKKTWKGR--DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSS 222
DL +++ +G S++ +L GGG P L++ + YGMTETSS
Sbjct: 239 TDL-----LERLGEGTYPSSLRCMLLGGGPAPKPLLETCVEK--GIPVYQTYGMTETSSQ 291
Query: 223 LTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SSHV 278
+ +T D L G GKP +L++ DG
Sbjct: 292 ICTLTA-DYMLTKVGS--------------------AGKPLFQCQLRIEKDGVVVPPRAE 330
Query: 279 GRILTRGAHVMLRYWDQFLAK-PSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGG 337
G I+ +G +V Y+++ A ++ G WL TGD+G +D+ G ++++ RR+ I SGG
Sbjct: 331 GEIVVKGPNVTGGYFNREDATHEAIRNG--WLHTGDLGYLDEEGFLYVLDRRSDLIISGG 388
Query: 338 ENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKE 397
EN+YP ++E VLL HP ++ VVG+A+ ESW + S +
Sbjct: 389 ENIYPAQIEEVLLSHPAVVEAGVVGMAD--------------ESWGQVPAAFVVKSGD-- 432
Query: 398 LLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREV 447
++ E + + C EK L +K P+ + + P ++ K+ R E+R+ V
Sbjct: 433 --VTEEEIIRFCEEK-LAKYKVPKK-ACFLEELPRNASKKLLRRELRKLV 478
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Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA). Bacillus weihenstephanensis (strain KBAB4) (taxid: 315730) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q5R9G9|ACSF2_PONAB Acyl-CoA synthetase family member 2, mitochondrial OS=Pongo abelii GN=ACSF2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 183/404 (45%), Gaps = 72/404 (17%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHT-----------APLCH- 117
I FTSGTTGSPKG +SH ++ S ++G + + LH +PL H
Sbjct: 260 IQFTSGTTGSPKGATLSHYNIVNNS----NMLG---ERLKLHEKTPEQLRMILPSPLYHC 312
Query: 118 IGGLSSAMAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT 176
+G + M LM GA + P F K ALEA+ + + L P + D+ +
Sbjct: 313 LGSVGGTMMCLMYGATLILASPVFNGKKALEAISRERGSFLYGTPTMFVDILN----QPD 368
Query: 177 WKGRDSVKKILNG---GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTL 233
+ D + + G G P EL++ N L+ AYG
Sbjct: 369 FSSYD-ISTMCGGVIAGSPAPPELIRAIINKINMKDLVVAYG------------------ 409
Query: 234 ETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV------GRILTRGAH 287
TP P F + ++V Q + VG+ PH E ++ + + + G + RG
Sbjct: 410 -TPENSPVTFAHFPEDTVEQ-KAESVGRIMPHTEARIMNMEAGTLAELNTPGELCIRGYC 467
Query: 288 VMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEA 347
VML YW + + W TGD+ ++++ G +VGR I GGEN+YP E+E
Sbjct: 468 VMLGYWGEPQKTEEAVDQDKWYRTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELED 527
Query: 348 VLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQ 407
HP + + VVG+ + R+ E + AC+RL++ + + E ++
Sbjct: 528 FFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEE----------------TTVEEIKA 571
Query: 408 HCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451
C+ K ++ FK PR ++++ +PLT +GKI++ ++R ++ HL
Sbjct: 572 FCKGK-ISHFKIPR-YIVFVTNYPLTISGKIQKFKLREQMERHL 613
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Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation. Pongo abelii (taxid: 9601) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|P23971|MENE_BACSU 2-succinylbenzoate--CoA ligase OS=Bacillus subtilis (strain 168) GN=menE PE=3 SV=2 | Back alignment and function description |
|---|
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/387 (28%), Positives = 186/387 (48%), Gaps = 59/387 (15%)
Query: 65 EGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 124
+ + +TSGTTG PKGV + +++ +G E D +L PL HI GLS+
Sbjct: 144 DATATLMYTSGTTGKPKGVQQTFGNHYFSAVSSALNLGITEQDRWLIALPLFHISGLSAL 203
Query: 125 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 184
++ G V +F L ++ +H VT + V ++A L +++T + +S++
Sbjct: 204 FKSVIYGMTVVLHQRFSVSDVLHSINRHEVTMISAVQTMLASL-----LEETNRCPESIR 258
Query: 185 KILNGGGGLPSELMKEATNS-FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 243
IL GGG P L++E FP + +YGMTET S +
Sbjct: 259 CILLGGGPAPLPLLEECREKGFP---VFQSYGMTETCSQIV------------------- 296
Query: 244 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS----SHVGRILTRGAHVMLRYWDQFLA- 298
++P + G GKP E+K+ DG G I+ +G +VM Y+++ A
Sbjct: 297 -TLSPEFSMEKLG-SAGKPLFSCEIKIERDGQVCEPYEHGEIMVKGPNVMKSYFNRESAN 354
Query: 299 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 358
+ S G WL TGD+G +D+ G ++++ RR+ I SGGEN+YP EVE+VLL HP +
Sbjct: 355 EASFQNG--WLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAVAEA 412
Query: 359 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK 418
V G + + ++ A + L + +S+ L +C+E+ L +K
Sbjct: 413 GVSGAEDKKWGKVPHAYLVLHKP------------------VSAGELTDYCKER-LAKYK 453
Query: 419 AP-RLFVLWRKPFPLTSTGKIRRDEVR 444
P + FVL R P ++ K+ R++++
Sbjct: 454 IPAKFFVLDR--LPRNASNKLLRNQLK 478
|
Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA). Bacillus subtilis (strain 168) (taxid: 224308) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 6 |
| >sp|O31826|YNGI_BACSU Putative acyl-CoA synthetase YngI OS=Bacillus subtilis (strain 168) GN=yngI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/397 (25%), Positives = 176/397 (44%), Gaps = 47/397 (11%)
Query: 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH-I 118
+S + + + +TSGTTG PKGV+++H +I + + D P H
Sbjct: 185 NSLDKDNVINMQYTSGTTGFPKGVMLTHFNVINNAANIAECMALTSQDRMCIPVPFFHCF 244
Query: 119 GGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWK 178
G + +A + VGA + + +F+ + L+ VE+ T L VP + +A L
Sbjct: 245 GCVLGVLACVSVGAAMIPVQEFDPVTVLKTVEKEKCTVLHGVPTMF--IAELHHPDFDAY 302
Query: 179 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 238
+++ + G PSE+MK + AYG TE S +T
Sbjct: 303 DLSTLRTGIMAGSPCPSEVMKAVIERMGMKDITIAYGQTEASPVIT-------------- 348
Query: 239 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH------VGRILTRGAHVMLRY 292
N + G+ PH E+K+ G+ G + TRG HVM Y
Sbjct: 349 ------QTRANDSFIRRVETTGRALPHTEVKIVEPGTCQEVQRGMQGELCTRGYHVMKGY 402
Query: 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
+ A + WL TGD+ +D+ G + GR + GGEN+YP E+E L QH
Sbjct: 403 YKDKDATRKAINHDGWLFTGDLAVMDEDGYCRITGRLKDMLIRGGENIYPREIEEFLYQH 462
Query: 353 PGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK 412
P ++ + VVG+ +A+ E A ++L++ +S + L+ +C+ K
Sbjct: 463 PAVLDVQVVGVPDAKFGEEAAAWIKLKDGKS----------------VSPDELKAYCKGK 506
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449
+ K PR +V++ +P+T++GKI++ ++R + +
Sbjct: 507 -IARHKIPR-YVIFTDDYPMTASGKIQKYKLREKTIE 541
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | ||||||
| 224122352 | 590 | predicted protein [Populus trichocarpa] | 0.997 | 0.774 | 0.655 | 0.0 | |
| 225444051 | 565 | PREDICTED: 2-succinylbenzoate--CoA ligas | 0.997 | 0.808 | 0.682 | 1e-180 | |
| 356533059 | 560 | PREDICTED: 2-succinylbenzoate--CoA ligas | 0.991 | 0.810 | 0.665 | 1e-178 | |
| 356555885 | 560 | PREDICTED: 2-succinylbenzoate--CoA ligas | 0.991 | 0.810 | 0.652 | 1e-177 | |
| 359483953 | 545 | PREDICTED: 2-succinylbenzoate--CoA ligas | 0.941 | 0.790 | 0.641 | 1e-172 | |
| 357448509 | 562 | 2-succinylbenzoate-CoA ligase [Medicago | 0.986 | 0.804 | 0.633 | 1e-169 | |
| 255575310 | 551 | AMP dependent CoA ligase, putative [Rici | 0.943 | 0.784 | 0.615 | 1e-167 | |
| 449433565 | 564 | PREDICTED: 2-succinylbenzoate--CoA ligas | 1.0 | 0.812 | 0.624 | 1e-164 | |
| 356555887 | 544 | PREDICTED: 2-succinylbenzoate--CoA ligas | 0.936 | 0.788 | 0.608 | 1e-163 | |
| 449511136 | 572 | PREDICTED: 2-succinylbenzoate--CoA ligas | 1.0 | 0.800 | 0.613 | 1e-162 |
| >gi|224122352|ref|XP_002330602.1| predicted protein [Populus trichocarpa] gi|222872160|gb|EEF09291.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/485 (65%), Positives = 376/485 (77%), Gaps = 28/485 (5%)
Query: 1 MLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTH 60
ML+TDES WY ELQ A+PS++WHV GS SS FV ++LT + L+ + + + +
Sbjct: 107 MLITDESCKHWYQELQSNALPSVKWHVFSGSPSSGFVKTSNVLTTETLRKHVIGTKQLDY 166
Query: 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDD------------- 107
SWAPEGAVIICFTSGTTG PKGV++SHSA+IVQSLAK+A VGY EDD
Sbjct: 167 SWAPEGAVIICFTSGTTGRPKGVIVSHSAMIVQSLAKVAAVGYSEDDFLIIWRIVALVAR 226
Query: 108 --------------VYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHC 153
VYLHTAPLCHIGGLSSA+ MLMVG CHV IPKFE+ A+EA++QHC
Sbjct: 227 NDCWLDSLFLGLLQVYLHTAPLCHIGGLSSAITMLMVGGCHVLIPKFEASLAIEAIKQHC 286
Query: 154 VTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISA 213
VTSLITVPA+MADL +L R+K+TWKGR VKK+LNGGG L +ELMK+AT FP+AKL+SA
Sbjct: 287 VTSLITVPAMMADLISLTRLKETWKGRQYVKKLLNGGGSLSAELMKDATELFPRAKLLSA 346
Query: 214 YGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD 273
YGMTET SSLTFMTL+DPTL+TP Q Q +S HQP GVCVGKP PHVELK+ +D
Sbjct: 347 YGMTETCSSLTFMTLHDPTLQTPAQTLQTVDKTKSSSAHQPHGVCVGKPPPHVELKISAD 406
Query: 274 GSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRI 333
S +GRILTRG H+MLRYWDQ K + ST + WLDTGDIGSIDD GNVWLVGR+N +I
Sbjct: 407 EPSTIGRILTRGPHLMLRYWDQNPMKATESTNDFWLDTGDIGSIDDCGNVWLVGRQNAQI 466
Query: 334 KSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSS 393
KSGGEN+YPEEVEA+LLQHPG+I VVVG+ ARLTEMVVAC++LR+SWQW+ +NC QS+
Sbjct: 467 KSGGENIYPEEVEAMLLQHPGVIATVVVGVPEARLTEMVVACIKLRQSWQWTNNNCKQSA 526
Query: 394 KNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 453
+N L L EVLR +CREK LTGFK P+LF+LWRKPFPLT+TGKIRRD+VRREVMSHL+
Sbjct: 527 ENN-LTLCREVLRDYCREKKLTGFKVPKLFILWRKPFPLTTTGKIRRDQVRREVMSHLQF 585
Query: 454 LPSNL 458
PSNL
Sbjct: 586 FPSNL 590
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444051|ref|XP_002263998.1| PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal isoform 1 [Vitis vinifera] gi|297740839|emb|CBI31021.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 314/460 (68%), Positives = 376/460 (81%), Gaps = 3/460 (0%)
Query: 1 MLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVN--KRDMLTADILKGYSLRSLPF 58
ML+TD S WY +L++ +PSLRWHV + S SD V+ LT ++LK +L+SL F
Sbjct: 107 MLITDSSCSYWYPKLENDHLPSLRWHVFM-DSLSDVVSIVLFSALTTEMLKKPALKSLSF 165
Query: 59 THSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHI 118
++WAPEGAV+ICFTSGTTG PKGV ISHSALI+QSLAKIAIVGY EDDVYLHTAPLCHI
Sbjct: 166 NYAWAPEGAVLICFTSGTTGRPKGVTISHSALIIQSLAKIAIVGYDEDDVYLHTAPLCHI 225
Query: 119 GGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWK 178
GGLSSA+ MLMVG CH+FIPKF++K ALEA++QH VTSLITVPAIM DL ++IR+K TWK
Sbjct: 226 GGLSSALTMLMVGGCHIFIPKFDAKLALEAIKQHHVTSLITVPAIMVDLVSIIRMKMTWK 285
Query: 179 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 238
+SVKKILNGGGGL + L+++A FP+AK++SAYGMTET SSLTFMTLYDPT + Q
Sbjct: 286 VTESVKKILNGGGGLSNGLIEDAIKFFPRAKILSAYGMTETCSSLTFMTLYDPTCASSRQ 345
Query: 239 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLA 298
Q F + +S H P+GVCVGKPAPHVELK+C D S HVGRILTRG H+MLRYWDQ +
Sbjct: 346 ALQEFVEIKSSSFHLPEGVCVGKPAPHVELKICFDSSDHVGRILTRGPHIMLRYWDQISS 405
Query: 299 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 358
+PS S E WLDTGDIGSIDD GN+WL+GR N RIKSGGENVYPEEVE VL QHPG+ G
Sbjct: 406 RPSDSPDEGWLDTGDIGSIDDYGNIWLIGRTNNRIKSGGENVYPEEVETVLSQHPGVTGS 465
Query: 359 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK 418
VVVG+ + RLTEMVVAC+R++++WQW++++ ++ KEL+LSSE LR HCREKNLTGFK
Sbjct: 466 VVVGLPDVRLTEMVVACIRIKDNWQWADNSPVHPTEKKELVLSSETLRHHCREKNLTGFK 525
Query: 419 APRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458
P+LF LWRKPFPLTSTGK+RR +V+REV+SHL SLPSNL
Sbjct: 526 IPKLFTLWRKPFPLTSTGKLRRYQVQREVLSHLHSLPSNL 565
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533059|ref|XP_003535086.1| PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 305/458 (66%), Positives = 366/458 (79%), Gaps = 4/458 (0%)
Query: 1 MLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTH 60
MLVTDESS + Y +LQ +PSL+WH+ L S SSDF K ++LTA++LK + ++ LPF +
Sbjct: 107 MLVTDESSYARYSKLQQNDVPSLKWHILLDSPSSDF-TKWNVLTAEMLKRHPVKLLPFDY 165
Query: 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG 120
SWAPEGAVIICFTSGTTG PKGV +SH ALI+QSLAKIAIVGY EDDVYLHTAPL HIGG
Sbjct: 166 SWAPEGAVIICFTSGTTGKPKGVTLSHGALIIQSLAKIAIVGYNEDDVYLHTAPLFHIGG 225
Query: 121 LSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
LSSAM MLMVG CHV +PKF+++SA++A+EQ+ VTS ITVPAIMA L ++IR K+TW+G
Sbjct: 226 LSSAMTMLMVGGCHVLMPKFDAESAVDAIEQYAVTSFITVPAIMASLISIIRHKETWQGG 285
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
D+VKKILNGGG L EL+K+ + F KAKLISAYGMTET SSLTF+TLY+P ET Q
Sbjct: 286 DTVKKILNGGGSLSHELIKDTSIFFHKAKLISAYGMTETCSSLTFLTLYEPMHETTSQSL 345
Query: 241 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 300
QAFG +HQ QGVCVGK APH+ELK+ +D S H+GRILTRG H+MLRYWDQ L P
Sbjct: 346 QAFGVAGSKLIHQQQGVCVGKAAPHIELKISADASGHIGRILTRGPHIMLRYWDQTLTNP 405
Query: 301 SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV 360
E WLDTGDIGSID GN+WL+GR NGRIKSGGEN+YPEEVEA+L QHPGI +VV
Sbjct: 406 LNPNNEAWLDTGDIGSIDHYGNLWLLGRTNGRIKSGGENIYPEEVEAILQQHPGIASVVV 465
Query: 361 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAP 420
VGI +A LTEMV AC++LRE+WQWSE S+ N+E LLS + L Q+C E +L+ FK P
Sbjct: 466 VGIPDAHLTEMVAACIQLRENWQWSE---QLSASNEEFLLSRKNLYQYCLENHLSRFKIP 522
Query: 421 RLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458
+ F++WRKPF LT+TGKIRRD+VR+EVMS L+SL SNL
Sbjct: 523 KTFIVWRKPFQLTTTGKIRRDQVRKEVMSQLQSLHSNL 560
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555885|ref|XP_003546260.1| PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 299/458 (65%), Positives = 365/458 (79%), Gaps = 4/458 (0%)
Query: 1 MLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTH 60
+LV DESS +WY +LQ +PSL+WH+ L S SSDF +K ++LT ++LK + ++ LPF +
Sbjct: 107 LLVIDESSYTWYSKLQQNDVPSLKWHILLDSPSSDF-SKWNVLTPEMLKRHPIKLLPFDY 165
Query: 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG 120
SWAP+GAVIICFTSGTTG PKGV +SH AL +QSLAKIAIVGY DDVYLHTAPLCHIGG
Sbjct: 166 SWAPDGAVIICFTSGTTGKPKGVTLSHGALTIQSLAKIAIVGYNVDDVYLHTAPLCHIGG 225
Query: 121 LSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
LSSAM MLMVG CHV +PKF+++SA++A+EQH VTS ITVPAIMA L ++IR K+TWKG
Sbjct: 226 LSSAMTMLMVGGCHVLMPKFDAESAVDAIEQHAVTSFITVPAIMASLISIIRHKETWKGG 285
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
++VKKILNGGG L EL+K+ + F KAKLISAYGMTET SSLTF+TLYDP ET Q
Sbjct: 286 ETVKKILNGGGSLSHELIKDTSIFFHKAKLISAYGMTETCSSLTFLTLYDPMHETTNQSL 345
Query: 241 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 300
QAFG +HQ QGVC+GK APH+ELK+ +D S H GRILTRG H+MLRYWDQ L P
Sbjct: 346 QAFGVAGSKLIHQQQGVCIGKAAPHIELKISADASGHTGRILTRGPHIMLRYWDQTLTNP 405
Query: 301 SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV 360
WLDTGDIGSID GN+WL+GR NGRIKSGGEN+YPEEVEA+L QHPGI +VV
Sbjct: 406 LNPNKRAWLDTGDIGSIDHYGNLWLLGRTNGRIKSGGENIYPEEVEAILQQHPGIASVVV 465
Query: 361 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAP 420
VGI +A LTEMV AC++LRE+WQWSE S+ N+E LLS + ++Q+C E +L+ FK P
Sbjct: 466 VGIPDAHLTEMVAACIQLRENWQWSE---QLSASNEEFLLSRKNIQQYCIENHLSRFKIP 522
Query: 421 RLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458
++F++WRKPFPLT+ GKI+RD+VR+EVMS L+SL SNL
Sbjct: 523 KMFIVWRKPFPLTTIGKIKRDQVRKEVMSQLQSLHSNL 560
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483953|ref|XP_003633043.1| PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/466 (64%), Positives = 356/466 (76%), Gaps = 35/466 (7%)
Query: 1 MLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTH 60
ML+TD S WY +L++ +PSLRWHV + S S + ++ LT ++LK +L+SL F +
Sbjct: 107 MLITDSSCSYWYPKLENDHLPSLRWHVFMDSLSE--FSSKETLTTEMLKKPALKSLSFNY 164
Query: 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG 120
+WAPEGAV+ICFTSGTTG PKGV ISHSALI+QSLAKIAIVGY EDDVYLHTAPLCHIGG
Sbjct: 165 AWAPEGAVLICFTSGTTGRPKGVTISHSALIIQSLAKIAIVGYDEDDVYLHTAPLCHIGG 224
Query: 121 LSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLI--------R 172
LSSA+ MLMVG CH+FIPKF++K ALEA++QH VTSLITVPAIM DL ++I R
Sbjct: 225 LSSALTMLMVGGCHIFIPKFDAKLALEAIKQHHVTSLITVPAIMVDLVSIISSGLESFVR 284
Query: 173 VKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPT 232
+K TWK +SVKKILNGG MTET SSLTFMTLYDPT
Sbjct: 285 MKMTWKVTESVKKILNGG-------------------------MTETCSSLTFMTLYDPT 319
Query: 233 LETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRY 292
+ Q Q F + +S H P+GVCVGKPAPHVELK+C D S HVGRILTRG H+MLRY
Sbjct: 320 CASSRQALQEFVEIKSSSFHLPEGVCVGKPAPHVELKICFDSSDHVGRILTRGPHIMLRY 379
Query: 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
WDQ ++PS S E WLDTGDIGSIDD GN+WL+GR N RIKSGGENVYPEEVE VL QH
Sbjct: 380 WDQISSRPSDSPDEGWLDTGDIGSIDDYGNIWLIGRTNNRIKSGGENVYPEEVETVLSQH 439
Query: 353 PGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK 412
PG+ G VVVG+ + RLTEMVVAC+R++++WQW++++ ++ KEL+LSSE LR HCREK
Sbjct: 440 PGVTGSVVVGLPDVRLTEMVVACIRIKDNWQWADNSPVHPTEKKELVLSSETLRHHCREK 499
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458
NLTGFK P+LF LWRKPFPLTSTGK+RR +V+REV+SHL SLPSNL
Sbjct: 500 NLTGFKIPKLFTLWRKPFPLTSTGKLRRYQVQREVLSHLHSLPSNL 545
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357448509|ref|XP_003594530.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|355483578|gb|AES64781.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/467 (63%), Positives = 358/467 (76%), Gaps = 15/467 (3%)
Query: 1 MLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTH 60
MLV DES SWY + Q +P L+WHV L S SSDF NK ++LT ILK + ++ L F +
Sbjct: 102 MLVIDESCYSWYFKFQQNDVPFLKWHVLLDSPSSDFTNKWNVLTPGILKRHHVKPLEFNY 161
Query: 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG 120
SWAPEGAVIICFTSGTTG PKGV ISH ALI+QSLAKIAIVGY EDDVYLHTAPLCHIGG
Sbjct: 162 SWAPEGAVIICFTSGTTGKPKGVTISHEALIIQSLAKIAIVGYSEDDVYLHTAPLCHIGG 221
Query: 121 LSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
LSSAMAMLMVG CHVF+PKF+++ A+ +E++ VTSLITVPAIM L +++R K+TWKG
Sbjct: 222 LSSAMAMLMVGGCHVFMPKFDAELAVGDIERYNVTSLITVPAIMTSLISIVRRKETWKGG 281
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYG--------MTETSSSLTFMTLYDPT 232
++VKKILNGGG L EL+K+ F KAKLISAYG MTE SSLTF+TLYDP
Sbjct: 282 ETVKKILNGGGSLSFELIKDTHIFFHKAKLISAYGRSFLTQCWMTEACSSLTFLTLYDPM 341
Query: 233 LETPGQLPQAFG-NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLR 291
+T Q +G + + +HQPQGVCVGK APHVELK+C DG + GRILTRG H+MLR
Sbjct: 342 QKTISHPFQTYGEEESKHLIHQPQGVCVGKAAPHVELKICKDGDT--GRILTRGPHLMLR 399
Query: 292 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 351
YWDQ L S EVW DTGDIG +D GN+WL+GR NGRIKSGGEN+YPEEVEA+LL+
Sbjct: 400 YWDQTLTNTSNQRSEVWFDTGDIGLMDCHGNLWLLGRTNGRIKSGGENIYPEEVEAILLE 459
Query: 352 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 411
HPGI +V+VGI +AR TEMV AC++ RE+WQW E S+ N+E LS + L+Q+C E
Sbjct: 460 HPGIARVVIVGIPDARFTEMVAACIQPRENWQWLE----HSTSNEEFHLSRKNLQQYCLE 515
Query: 412 KNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458
NL+ FK P++F+ WRKPFPLT+TGKIRRD+VR+EV+S ++SL SNL
Sbjct: 516 NNLSRFKIPKIFIEWRKPFPLTTTGKIRRDQVRKEVLSEIQSLHSNL 562
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575310|ref|XP_002528558.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223532002|gb|EEF33813.1| AMP dependent CoA ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 290/471 (61%), Positives = 348/471 (73%), Gaps = 39/471 (8%)
Query: 1 MLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTH 60
M V DES WY EL+ +IPSL WHV L SSS + ++LT D L+ + S +
Sbjct: 107 MFVADESCSFWYSELKINSIPSLMWHVFLDFSSSSVIQASNILTTDTLRKQGIGSPELNY 166
Query: 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG 120
SWAPE AV+ICFTSGTTG PKGV+ISHSAL VQSLAK+A VGY EDDVYLHTAPLCHIGG
Sbjct: 167 SWAPERAVLICFTSGTTGRPKGVLISHSALTVQSLAKVAFVGYCEDDVYLHTAPLCHIGG 226
Query: 121 LSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATL---------- 170
LSSAMAMLMVGACHVFIPKF + A++ ++QH VTSLITVPA M DL +L
Sbjct: 227 LSSAMAMLMVGACHVFIPKFNASLAVDVIDQHNVTSLITVPATMGDLISLTSQLAQFIFQ 286
Query: 171 ---IRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMT 227
+R K+TWKGR ++KK+LNGG MTE+ SSLTFMT
Sbjct: 287 RNFVREKETWKGRHTLKKMLNGG-------------------------MTESCSSLTFMT 321
Query: 228 LYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAH 287
LYDPTLETP QL Q +G SV+QPQGVCVGKPAPHVE+K+C DGSSH GRILTRG H
Sbjct: 322 LYDPTLETPDQLLQTYGRTKLTSVNQPQGVCVGKPAPHVEIKICPDGSSHSGRILTRGPH 381
Query: 288 VMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEA 347
MLRYWDQ ++ S T E+WLDTGDIG ID GN+WL+GR N RIKSGGENV+PEEVEA
Sbjct: 382 AMLRYWDQTPSEASDRTNEIWLDTGDIGIIDGSGNLWLIGRANNRIKSGGENVHPEEVEA 441
Query: 348 VLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQ 407
+LLQHPG+ +V+GI +ARL EMVVAC+RLRE W+WS +C + KE+LL SE+L++
Sbjct: 442 ILLQHPGVAAAIVLGIPDARLMEMVVACIRLREGWRWSNDDC-KPLAGKEILLCSEILQK 500
Query: 408 HCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458
+CREKNL+ FK P++F++WRKPFPLT++GKIRRD++R EV SHL+ LPS+L
Sbjct: 501 YCREKNLSRFKVPKIFIIWRKPFPLTTSGKIRRDQIRGEVTSHLQFLPSSL 551
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433565|ref|XP_004134568.1| PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 286/458 (62%), Positives = 351/458 (76%)
Query: 1 MLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTH 60
MLV DE WY +LQ+ IPSLRWHV +GS + R LT++ LK + + ++P
Sbjct: 107 MLVIDEGGCQWYSKLQNNHIPSLRWHVFIGSHLPGYDKTRGALTSEELKKHYVINMPPNF 166
Query: 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG 120
APEG +ICFTSGTTG PKGV I+HSALIVQ+LAK+AIVGY EDDVYLHTAPLCHIGG
Sbjct: 167 LHAPEGVALICFTSGTTGRPKGVAITHSALIVQTLAKVAIVGYSEDDVYLHTAPLCHIGG 226
Query: 121 LSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
LSSA+AMLM+GA H+ IPKFE KSA+EA++ + VTSLITVPA+MADL +LIR + K R
Sbjct: 227 LSSAIAMLMLGARHILIPKFEVKSAVEAIDLYGVTSLITVPAMMADLVSLIRERDNGKTR 286
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
+SVKKILNGGGGLP EL+K+A FP+AKL+SAYGMTET SSLTF+ L DP ET
Sbjct: 287 ESVKKILNGGGGLPLELIKDAVGIFPRAKLVSAYGMTETCSSLTFLMLCDPMGETSVPHF 346
Query: 241 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 300
Q++ + SV+QP+GVCVGKPAPH+E+K+ DGSS+VGRILTRG H+MLRY+D+ A+P
Sbjct: 347 QSYEHSKCRSVYQPEGVCVGKPAPHIEIKISLDGSSNVGRILTRGPHLMLRYYDKISARP 406
Query: 301 SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV 360
S +VW DTGDIGSIDD GN+WLVGR NGRIKSGGEN+YPEEVE +LLQHPG+ VV
Sbjct: 407 SNDANDVWFDTGDIGSIDDNGNLWLVGRSNGRIKSGGENIYPEEVERILLQHPGVKRCVV 466
Query: 361 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAP 420
+GI ++RLTE VACV+L E WQW E+N + + LSS +LR+HC + NLTGFK P
Sbjct: 467 IGIPDSRLTEKTVACVQLEEDWQWYETNHELLRGKIKQHLSSAILREHCMKCNLTGFKVP 526
Query: 421 RLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458
+ F+ W KPFP+TS GK +RD +R EV+SHL+ L S L
Sbjct: 527 KEFIKWGKPFPVTSMGKFKRDAIRNEVISHLRLLRSTL 564
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555887|ref|XP_003546261.1| PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 284/467 (60%), Positives = 347/467 (74%), Gaps = 38/467 (8%)
Query: 1 MLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTH 60
+LV DESS +WY +LQ +PSL+WH+ L S SSDF +K ++LT ++LK + ++ LPF +
Sbjct: 107 LLVIDESSYTWYSKLQQNDVPSLKWHILLDSPSSDF-SKWNVLTPEMLKRHPIKLLPFDY 165
Query: 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG 120
SWAP+GAVIICFTSGTTG PKGV +SH AL +QSLAKIAIVGY DDVYLHTAPLCHIGG
Sbjct: 166 SWAPDGAVIICFTSGTTGKPKGVTLSHGALTIQSLAKIAIVGYNVDDVYLHTAPLCHIGG 225
Query: 121 LSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRV------- 173
LSSAM MLMVG CHV +PKF+++SA++A+EQH VTS ITVPAIMA L ++IR
Sbjct: 226 LSSAMTMLMVGGCHVLMPKFDAESAVDAIEQHAVTSFITVPAIMASLISIIRYIPVFNIF 285
Query: 174 --KKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDP 231
K+TWKG ++VKKILNGG MTET SSLTF+TLYDP
Sbjct: 286 RHKETWKGGETVKKILNGG-------------------------MTETCSSLTFLTLYDP 320
Query: 232 TLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLR 291
ET Q QAFG +HQ QGVC+GK APH+ELK+ +D S H GRILTRG H+MLR
Sbjct: 321 MHETTNQSLQAFGVAGSKLIHQQQGVCIGKAAPHIELKISADASGHTGRILTRGPHIMLR 380
Query: 292 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 351
YWDQ L P WLDTGDIGSID GN+WL+GR NGRIKSGGEN+YPEEVEA+L Q
Sbjct: 381 YWDQTLTNPLNPNKRAWLDTGDIGSIDHYGNLWLLGRTNGRIKSGGENIYPEEVEAILQQ 440
Query: 352 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 411
HPGI +VVVGI +A LTEMV AC++LRE+WQWSE S+ N+E LLS + ++Q+C E
Sbjct: 441 HPGIASVVVVGIPDAHLTEMVAACIQLRENWQWSE---QLSASNEEFLLSRKNIQQYCIE 497
Query: 412 KNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458
+L+ FK P++F++WRKPFPLT+ GKI+RD+VR+EVMS L+SL SNL
Sbjct: 498 NHLSRFKIPKMFIVWRKPFPLTTIGKIKRDQVRKEVMSQLQSLHSNL 544
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449511136|ref|XP_004163873.1| PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 286/466 (61%), Positives = 353/466 (75%), Gaps = 8/466 (1%)
Query: 1 MLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTH 60
MLV DE WY +LQ+ IPSLRWHV +GS + R LT++ LK + + ++P
Sbjct: 107 MLVIDEGGCQWYSKLQNNHIPSLRWHVFIGSHLPGYDKTRGALTSEELKKHYVINMPPNF 166
Query: 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG 120
APEG +ICFTSGTTG PKGV I+HSALIVQ+LAK+AIVGY EDDVYLHTAPLCHIGG
Sbjct: 167 LHAPEGVALICFTSGTTGRPKGVAITHSALIVQTLAKVAIVGYSEDDVYLHTAPLCHIGG 226
Query: 121 LSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
LSSA+AMLM+GA H+ IPKFE KSA+EA++ + VTSLITVPA+MADL +LIR + K R
Sbjct: 227 LSSAIAMLMLGARHILIPKFEVKSAVEAIDLYGVTSLITVPAMMADLVSLIRERDNGKTR 286
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYG--------MTETSSSLTFMTLYDPT 232
+SVKKILNGGGGLP EL+K+A + FP+AKL+SAYG MTET SSLTF+ L DP
Sbjct: 287 ESVKKILNGGGGLPLELIKDAVSIFPRAKLVSAYGSAFVPHCWMTETCSSLTFLMLCDPM 346
Query: 233 LETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRY 292
ET Q++ + SV+QP+GVCVGKPAPH+E+K+ DGSS+VGRILTRG H+MLRY
Sbjct: 347 GETSVPHFQSYEHSKCRSVYQPEGVCVGKPAPHIEIKISLDGSSNVGRILTRGPHLMLRY 406
Query: 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
+D+ A+PS +VW DTGDIGSIDD GN+WLVGR NGRIKSGGEN+YPEEVE +LLQH
Sbjct: 407 YDKISARPSNDANDVWFDTGDIGSIDDNGNLWLVGRSNGRIKSGGENIYPEEVERILLQH 466
Query: 353 PGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK 412
PG+ VV+GI ++RLTE VACV+L E+WQW E+N + + LSS +LR+HC +
Sbjct: 467 PGVKRCVVIGIPDSRLTEKTVACVQLEENWQWYETNHELLRGKIKQHLSSAILREHCMKC 526
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458
NLTGFK P+ F+ W KPFP+TS GK +RD +R EV+SHL+ L S L
Sbjct: 527 NLTGFKVPKEFIKWGKPFPVTSMGKFKRDAIRNEVISHLRLLRSTL 572
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | ||||||
| TAIR|locus:2028165 | 560 | AAE14 "acyl-activating enzyme | 0.973 | 0.796 | 0.555 | 1.4e-128 | |
| TIGR_CMR|CPS_0661 | 520 | CPS_0661 "AMP-binding enzyme f | 0.650 | 0.573 | 0.291 | 1.1e-33 | |
| UNIPROTKB|E1BS15 | 589 | ACSF2 "Uncharacterized protein | 0.744 | 0.578 | 0.293 | 1.8e-28 | |
| UNIPROTKB|E1BVI3 | 593 | ACSF2 "Uncharacterized protein | 0.744 | 0.575 | 0.293 | 5.4e-27 | |
| MGI|MGI:2388287 | 615 | Acsf2 "acyl-CoA synthetase fam | 0.635 | 0.473 | 0.288 | 8.9e-26 | |
| UNIPROTKB|F1PTR3 | 612 | ACSF2 "Uncharacterized protein | 0.692 | 0.517 | 0.28 | 6.9e-25 | |
| UNIPROTKB|G1K208 | 614 | ACSF2 "Acyl-CoA synthetase fam | 0.633 | 0.472 | 0.295 | 1.7e-23 | |
| UNIPROTKB|Q17QJ1 | 615 | ACSF2 "Acyl-CoA synthetase fam | 0.633 | 0.471 | 0.295 | 1.7e-23 | |
| UNIPROTKB|F1RT96 | 609 | ACSF2 "Uncharacterized protein | 0.637 | 0.479 | 0.278 | 8.4e-23 | |
| UNIPROTKB|B4DUF5 | 455 | ACSF2 "Acyl-CoA synthetase fam | 0.637 | 0.641 | 0.278 | 1.1e-22 |
| TAIR|locus:2028165 AAE14 "acyl-activating enzyme 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 259/466 (55%), Positives = 320/466 (68%)
Query: 1 MLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNK-RDMLTADILKGYSLRSLPFT 59
+LVTDE+ SW +++Q+ IPSL+W V + S+S+DF N+ LT ++LK +L T
Sbjct: 107 LLVTDETCVSWCIDVQNGDIPSLKWRVLMESTSTDFANELNQFLTTEMLKQRTLVPSLAT 166
Query: 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIG 119
++WA + AV+ICFTSGTTG PKGV ISH A I QSLAKIAI GYGEDDVYLHT+PL HIG
Sbjct: 167 YAWASDDAVVICFTSGTTGRPKGVTISHLAFITQSLAKIAIAGYGEDDVYLHTSPLVHIG 226
Query: 120 GLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKG 179
GLSSAMAMLMVGACHV +PKF++K+AL+ +EQ+ +T ITVPA+MADL + R K
Sbjct: 227 GLSSAMAMLMVGACHVLLPKFDAKTALQVMEQNHITCFITVPAMMADLIRVNRTTKNGAE 286
Query: 180 RDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
V+KILNGGG L SEL+KEA N FP A+++SAYGMTE SSLTFMTL+DPT E+
Sbjct: 287 NRGVRKILNGGGSLSSELLKEAVNIFPCARILSAYGMTEACSSLTFMTLHDPTQES---- 342
Query: 240 PQAFGNVTPNSVHQP-QGVCVGKPAPHVELKVCSD-GSSHVGRILTRGAHVMLRYWDQFL 297
F VT ++QP QG CVGKPAPH+EL V D SS VG+ILTRG H MLRYW +
Sbjct: 343 ---F-KVTYPLLNQPKQGTCVGKPAPHIELMVKLDEDSSRVGKILTRGPHTMLRYWGHQV 398
Query: 298 AKPSVSTGE-----VWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
A+ +V T E WL N+WL+GR NGRIK+GGENVYPEEVEAVL++H
Sbjct: 399 AQENVETSESRSNEAWLDTGDIGAFDEFGNLWLIGRSNGRIKTGGENVYPEEVEAVLVEH 458
Query: 353 PXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREK 412
P + RL EMVVACVRL+E W WS D + HCR +
Sbjct: 459 PGIVSAVVIGVIDTRLGEMVVACVRLQEKWIWS----DVENRKGSFQLSSETLKHHCRTQ 514
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458
NLTGFK P+ FV W K FPLT+TGK++RDEVRR+V+SH + + S+L
Sbjct: 515 NLTGFKIPKRFVRWEKQFPLTTTGKVKRDEVRRQVLSHFQIMTSSL 560
|
|
| TIGR_CMR|CPS_0661 CPS_0661 "AMP-binding enzyme family protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 311 (114.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 91/312 (29%), Positives = 138/312 (44%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYG-EDDVYLHTAPLCHIGGLSSAMAML 128
I +T GTTG PKGV++SH+ L S+ A +G + YLH AP+ H+ + + AM+
Sbjct: 163 IFYTGGTTGFPKGVMLSHTNLWSSSIVVTAEMGLNVAGERYLHAAPMFHLADVGVSYAMV 222
Query: 129 MVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILN 188
+ G VF+P FE+ S +EA+E V ++ VP ++ + + S+K I+
Sbjct: 223 IGGLSQVFVPYFEATSVIEAIEHKQVNHVLLVPTMVTMMLATPALDNA--NFSSLKHIIY 280
Query: 189 GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 248
G +P + A K I AYG +E S ++ + LE P G +
Sbjct: 281 GASPMPEGTLIAAMEKMSSVKFIQAYGQSELSPVISILPAEYHVLEGPNA-----GKL-- 333
Query: 249 NSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVW 308
S +P CV KV G VG I G + ML YW+ + + + + W
Sbjct: 334 RSAGRP-AYCVSVEMRDENGKVLPTGK--VGEIAASGPNSMLGYWNN-TEQTAATLIDGW 389
Query: 309 LXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARL 368
+ ++LV R I +GGENV+ EVE L HP + +
Sbjct: 390 VLTGDAGYMDEDGFIFLVDRLKDMIVTGGENVFSAEVENALSHHPAIQESVVLGIPSEQW 449
Query: 369 TEMVVACVRLRE 380
E V A +RL E
Sbjct: 450 GESVHAILRLNE 461
|
|
| UNIPROTKB|E1BS15 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
Identities = 107/365 (29%), Positives = 161/365 (44%)
Query: 20 IPSLRWHVSLGSSSSDFVNKRDMLTA-DILKGYSLRSLPFTHSWAPEGAVIICFTSGTTG 78
+P L + L S + +++ A D LR+L T S V I FTSGTTG
Sbjct: 188 LPDLSTVIMLDSKLPGTFHMDEVMQAGDSSHMKQLRALQQTLSC--NEPVNIQFTSGTTG 245
Query: 79 SPKGVVISHSALIVQSLAKIAI-VGYGEDDVYLHT-APLCH-IGGLSSAMAMLMVGACHV 135
SPKG +SH IV + I + +G E D + APL H + + M + G+ V
Sbjct: 246 SPKGATLSHRN-IVNNANLIGMRLGITEQDYRVCIPAPLYHCLASVGGCMVSALHGSSCV 304
Query: 136 F-IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLP 194
F P FE K+ LEAV Q + L P + D+ L + S++ + G +P
Sbjct: 305 FSAPSFEGKATLEAVSQEKCSFLHGTPTMFIDM--LSQPDFDSYNLSSLRGGVIAGSPVP 362
Query: 195 SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQP 254
E+MK + +++ AYG TE +S +TFM PT + + + G++ P++ +
Sbjct: 363 PEIMKVVSTKMHMPEVMVAYGTTE-NSPVTFMGF--PTDDITRRT-ETVGSILPHTEAKI 418
Query: 255 QGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXX 314
+ KP P + G + RG VML YW+ V + + W
Sbjct: 419 EDPETRKPVP----------LNTPGELQVRGYCVMLGYWNDSARTREVISDDNWYKTGDI 468
Query: 315 XXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVA 374
++GR I GGEN+YP E+E L HP ++R+ E V A
Sbjct: 469 ATLDEHGYCRIIGRCKDMIIRGGENIYPAEIEQFLHTHPKVEEVQVVGVKDSRMGEEVCA 528
Query: 375 CVRLR 379
C+RLR
Sbjct: 529 CIRLR 533
|
|
| UNIPROTKB|E1BVI3 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 5.4e-27, Sum P(2) = 5.4e-27
Identities = 107/365 (29%), Positives = 161/365 (44%)
Query: 20 IPSLRWHVSLGSSSSDFVNKRDMLTA-DILKGYSLRSLPFTHSWAPEGAVIICFTSGTTG 78
+P L + L S + +++ A D LR+L T S V I FTSGTTG
Sbjct: 188 LPDLSTVIMLDSKLPGTFHMDEVMQAGDSSHMKQLRALQQTLSC--NEPVNIQFTSGTTG 245
Query: 79 SPKGVVISHSALIVQSLAKIAI-VGYGEDDVYLHT-APLCH-IGGLSSAMAMLMVGACHV 135
SPKG +SH IV + I + +G E D + APL H + + M + G+ V
Sbjct: 246 SPKGATLSHRN-IVNNANLIGMRLGITEQDYRVCIPAPLYHCLASVGGCMVSALHGSSCV 304
Query: 136 F-IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLP 194
F P FE K+ LEAV Q + L P + D+ L + S++ + G +P
Sbjct: 305 FSAPSFEGKATLEAVSQEKCSFLHGTPTMFIDM--LSQPDFDSYNLSSLRGGVIAGSPVP 362
Query: 195 SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQP 254
E+MK + +++ AYG TE +S +TFM PT + + + G++ P++ +
Sbjct: 363 PEIMKVVSTKMHMPEVMVAYGTTE-NSPVTFMGF--PTDDITRRT-ETVGSILPHTEAKI 418
Query: 255 QGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXX 314
+ KP P + G + RG VML YW+ V + + W
Sbjct: 419 EDPETRKPVP----------LNTPGELQVRGYCVMLGYWNDSARTREVISDDNWYKTGDI 468
Query: 315 XXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVA 374
++GR I GGEN+YP E+E L HP ++R+ E V A
Sbjct: 469 ATLDEHGYCRIIGRCKDMIIRGGENIYPAEIEQFLHTHPKVEEVQVVGVKDSRMGEEVCA 528
Query: 375 CVRLR 379
C+RLR
Sbjct: 529 CIRLR 533
|
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| MGI|MGI:2388287 Acsf2 "acyl-CoA synthetase family member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 8.9e-26, Sum P(2) = 8.9e-26
Identities = 92/319 (28%), Positives = 142/319 (44%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLA---KIAIVGYGEDDVYLHT-APLCH-IGGLSSA 124
I FTSGTTG+PKG +SH ++ S+ ++ + +++ L +PL H +G +
Sbjct: 260 IQFTSGTTGNPKGATLSHHNIVNNSMLIGQRLKMPTKTAEELRLVLPSPLYHCLGSVGGT 319
Query: 125 MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD-- 181
M +M GA + P F K ALEA+ + T L P + D+ + + D
Sbjct: 320 MVSMMHGATLLLSSPSFNGKKALEAISREKGTLLYGTPTMFVDILN----QPDFSSYDFT 375
Query: 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 241
S++ + G P EL++ N +L+ YG TE +S +TFM + TLE Q
Sbjct: 376 SIRGGVIAGSPAPPELIRAIINKMNMKELVVVYGTTE-NSPVTFMNFPEDTLE---QKAG 431
Query: 242 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPS 301
+ G + P++ Q V G+ L V G + RG VM YW + K
Sbjct: 432 SVGRIMPHTEAQIVNVETGELT---NLNV-------PGELYIRGYCVMQGYWGE-PQKTF 480
Query: 302 VSTGE-VWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXX 360
+ G+ W +VGR I GGEN+YP E+E L+HP
Sbjct: 481 ETVGQDKWYRTGDIALMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFLKHPQVQEAQV 540
Query: 361 XXXANARLTEMVVACVRLR 379
+ R+ E + AC+RL+
Sbjct: 541 VGVKDERMGEEICACIRLK 559
|
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| UNIPROTKB|F1PTR3 ACSF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 98/350 (28%), Positives = 150/350 (42%)
Query: 49 KGYSLRSLPFTHSWAP-EGAVIICFTSGTTGSPKGVVISHSALIVQS-----LAKIAIVG 102
K L L +T + + I FTSGTTG+PKG +SH ++ S K+ +
Sbjct: 232 KEQHLAQLRYTQQFLSCHDPINIQFTSGTTGNPKGATLSHYNIVNNSNLIGDRLKMHLKP 291
Query: 103 YGEDDVYLHTAPLCH-IGGLSSAMAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITV 160
E + L +PL H +G + M +M G + P F K ALEA+ + + L
Sbjct: 292 PEEKRMIL-PSPLYHCLGSVGGTMVSVMYGTTLILSSPTFNGKKALEAISKERGSFLYGT 350
Query: 161 PAIMADLATLIRVKKTWKGRDSVKKILNG---GGGLPSELMKEATNSFPKAKLISAYGMT 217
P + D+ + + D + I G G P EL++ + L+ AYG T
Sbjct: 351 PTMFVDILN----QPDFSSYD-ISTIRGGVIAGSPAPPELIRTIIDKLNMKDLVVAYGTT 405
Query: 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH 277
E +S +TFM + T+E Q + G + P++ Q + G VEL
Sbjct: 406 E-NSPVTFMNFEEDTVE---QKAETVGRILPHTEAQIVNMKTGNL---VELNT------- 451
Query: 278 VGRILTRGAHVMLRYWDQFLAKPSVSTG-EVWLXXXXXXXXXXXXNVWLVGRRNGRIKSG 336
G + RG VML YW + K + G + W +VGR I G
Sbjct: 452 PGELFIRGYCVMLGYWGE-PEKTKEAIGPDKWYRTGDIAAIDKQGFCKIVGRSKDMIIRG 510
Query: 337 GENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSE 386
GEN+YP E+E +HP +AR+ E + AC+RL++ + +E
Sbjct: 511 GENIYPAELEDFFHKHPQVLEVQVVGVKDARMGEEICACIRLKKGEKTTE 560
|
|
| UNIPROTKB|G1K208 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 95/322 (29%), Positives = 137/322 (42%)
Query: 70 ICFTSGTTGSPKGVVISH-----SALIVQSLAKIAIVGYGEDDVYLHTAPLCH-IGGLSS 123
I FTSGTTGSPKG +SH +A ++ ++ E V L +PL H +G +
Sbjct: 259 IQFTSGTTGSPKGATLSHYNIVNNANMIGQRLRLHQKTPEESRVVL-PSPLYHCLGSVGG 317
Query: 124 AMAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDS 182
M LM G + P FE K LEA+ + L P + D+ + + D
Sbjct: 318 TMVSLMHGVTLILCSPVFEGKKTLEAISRERGCFLYGTPTMFVDVLN----QPDFSSYD- 372
Query: 183 VKKILNG---GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
+ + G G P EL++ N +L+ AYG TE +S +TFM + T+E Q
Sbjct: 373 ISTMRGGVIAGSPAPPELIRAIINKLNMKELVVAYGTTE-NSPVTFMNFTEDTVE---QK 428
Query: 240 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 299
++ G V P++ Q G EL G + RG VML YW + K
Sbjct: 429 AESVGRVMPHTEAQIVNTETGTLT---ELNT-------PGELCIRGYCVMLGYWGE-PQK 477
Query: 300 PSVSTGE-VWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXX 358
+ G+ W +VGR I GGEN+YP E+E HP
Sbjct: 478 TEEAIGQDKWYRTGDIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEV 537
Query: 359 XXXXXANARLTEMVVACVRLRE 380
+ R+ E + AC+RL+E
Sbjct: 538 QVVGVKDDRMGEEICACIRLKE 559
|
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| UNIPROTKB|Q17QJ1 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 95/322 (29%), Positives = 137/322 (42%)
Query: 70 ICFTSGTTGSPKGVVISH-----SALIVQSLAKIAIVGYGEDDVYLHTAPLCH-IGGLSS 123
I FTSGTTGSPKG +SH +A ++ ++ E V L +PL H +G +
Sbjct: 260 IQFTSGTTGSPKGATLSHYNIVNNANMIGQRLRLHQKTPEESRVVL-PSPLYHCLGSVGG 318
Query: 124 AMAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDS 182
M LM G + P FE K LEA+ + L P + D+ + + D
Sbjct: 319 TMVSLMHGVTLILCSPVFEGKKTLEAISRERGCFLYGTPTMFVDVLN----QPDFSSYD- 373
Query: 183 VKKILNG---GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
+ + G G P EL++ N +L+ AYG TE +S +TFM + T+E Q
Sbjct: 374 ISTMRGGVIAGSPAPPELIRAIINKLNMKELVVAYGTTE-NSPVTFMNFTEDTVE---QK 429
Query: 240 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 299
++ G V P++ Q G EL G + RG VML YW + K
Sbjct: 430 AESVGRVMPHTEAQIVNTETGTLT---ELNT-------PGELCIRGYCVMLGYWGE-PQK 478
Query: 300 PSVSTGE-VWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXX 358
+ G+ W +VGR I GGEN+YP E+E HP
Sbjct: 479 TEEAIGQDKWYRTGDIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEV 538
Query: 359 XXXXXANARLTEMVVACVRLRE 380
+ R+ E + AC+RL+E
Sbjct: 539 QVVGVKDDRMGEEICACIRLKE 560
|
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| UNIPROTKB|F1RT96 ACSF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 8.4e-23, Sum P(2) = 8.4e-23
Identities = 89/320 (27%), Positives = 139/320 (43%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQS--LAKIAIVGY--GEDDVYLHTAPLCH-IGGLSSA 124
I FTSGTTGSPKG +SH ++ S + + + E + PL H +G +
Sbjct: 254 IQFTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGT 313
Query: 125 MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 183
M LM G + P F+ K ALEA+ + + L P + D+ + + D +
Sbjct: 314 MVSLMHGVTLILSSPVFDGKKALEAISRERGSFLYGTPTMFVDILN----QPDFSSYD-I 368
Query: 184 KKILNG---GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
I G G +P EL++ N +L+ AYG TE +S +TFM + T+E Q
Sbjct: 369 SAICGGVIAGSPVPPELIRAIINKMNMKELVVAYGTTE-NSPVTFMNFPEDTME---QKA 424
Query: 241 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 300
++ G V P++ Q ++E + ++ ++ G + RG VM YW
Sbjct: 425 ESVGRVMPHTEAQIM---------NMETRTLAELNTP-GELCIRGYCVMQGYWGDPQKTD 474
Query: 301 SVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXX 360
V + W +VGR I GGEN+YP E+E HP
Sbjct: 475 EVIGQDKWYRTGDIAVMDEQGFCRIVGRAKDMIIRGGENIYPAELEDFFHTHPQVQDVQV 534
Query: 361 XXXANARLTEMVVACVRLRE 380
+ R+ E + AC+RL++
Sbjct: 535 VGVKDNRMGEEICACIRLKK 554
|
|
| UNIPROTKB|B4DUF5 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 253 (94.1 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 89/320 (27%), Positives = 138/320 (43%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQS--LA-KIAIVGYGEDDVYLHTA-PLCH-IGGLSSA 124
I FTSGTTGSPKG +SH ++ S L ++ + + + + PL H +G ++
Sbjct: 100 IQFTSGTTGSPKGATLSHYNIVNNSNILGERLKLHEKTPEQLRMILPNPLYHCLGSVAGT 159
Query: 125 MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 183
M LM GA + P F K ALEA+ + T L P + D+ + + D +
Sbjct: 160 MMCLMYGATLILASPIFNGKKALEAISRERGTFLYGTPTMFVDILN----QPDFSSYD-I 214
Query: 184 KKILNG---GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
+ G G P EL++ N L+ AYG TE +S +TF + T+E Q
Sbjct: 215 STMCGGVIAGSPAPPELIRAIINKINMKDLVVAYGTTE-NSPVTFAHFPEDTVE---QKA 270
Query: 241 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 300
++ G + P++ + + G A K+ + G + RG VML YW +
Sbjct: 271 ESVGRIMPHTEARIMNMEAGTLA-----KLNTPGE-----LCIRGYCVMLGYWGEPQKTE 320
Query: 301 SVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXX 360
+ W +VGR I GGEN+YP E+E HP
Sbjct: 321 EAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQV 380
Query: 361 XXXANARLTEMVVACVRLRE 380
+ R+ E + AC+RL++
Sbjct: 381 VGVKDDRMGEEICACIRLKD 400
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8VYJ1 | MENE_ARATH | 6, ., 2, ., 1, ., 2, 6 | 0.5922 | 0.9737 | 0.7964 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.140.197.1 | o-succinylbenzoate-CoA ligase (EC-6.2.1.26) (590 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_fgenesh4_pm.C_LG_I0932 | naphthoate synthase (EC-4.1.3.36) (327 aa) | • | • | • | 0.916 | |||||
 | gw1.22067.3.1 | annotation not avaliable (155 aa) | • | 0.463 | |||||||
 | gw1.XVI.2992.1 | annotation not avaliable (337 aa) | • | 0.428 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 458 | |||
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 0.0 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 3e-96 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 1e-90 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 2e-86 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 8e-83 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 4e-71 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 2e-69 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 5e-67 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 2e-66 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 4e-62 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 7e-58 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-56 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 2e-55 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 2e-55 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 4e-55 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 2e-54 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 5e-53 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 9e-53 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 6e-52 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 6e-51 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-50 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-50 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 7e-50 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 4e-49 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 8e-49 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 1e-48 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 7e-48 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 5e-44 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 8e-43 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 6e-42 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 2e-41 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 4e-40 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 5e-40 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 4e-39 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 8e-39 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 8e-39 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 1e-37 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 3e-37 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 9e-37 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 1e-36 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-36 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 2e-36 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 2e-36 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 4e-36 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 9e-36 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-35 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 3e-35 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 7e-35 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 8e-35 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 9e-35 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 2e-34 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 3e-34 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 8e-34 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 2e-33 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-32 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 4e-32 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 6e-32 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 9e-32 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 2e-31 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 3e-31 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 3e-31 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 3e-31 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 3e-31 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 1e-30 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 3e-30 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 3e-30 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 4e-30 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 1e-29 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 2e-29 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 5e-29 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 7e-28 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 7e-28 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 1e-27 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 2e-27 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 2e-27 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 3e-27 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 7e-27 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 1e-26 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 1e-26 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 4e-26 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 6e-26 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 8e-26 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 3e-25 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 4e-25 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 8e-25 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 1e-24 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 1e-24 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-24 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 3e-24 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 5e-23 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 6e-23 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 8e-23 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 8e-23 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 8e-23 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 1e-22 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 9e-22 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 2e-21 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 5e-21 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 8e-21 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 9e-21 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-20 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 5e-20 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 7e-20 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 9e-20 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 1e-19 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 1e-19 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 2e-19 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 3e-19 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 3e-19 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-19 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 7e-19 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 9e-19 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-18 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 1e-17 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 2e-17 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 2e-17 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 2e-17 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 3e-17 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-17 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-17 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 8e-17 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 9e-17 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 2e-16 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 2e-15 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 2e-15 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-15 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 4e-15 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 1e-14 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 6e-14 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 2e-13 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 3e-13 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 7e-13 | |
| PRK08308 | 414 | PRK08308, PRK08308, acyl-CoA synthetase; Validated | 7e-13 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-12 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-12 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 5e-12 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-11 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 3e-11 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 3e-11 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 7e-11 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 4e-10 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 5e-10 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 5e-10 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 1e-09 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-09 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 2e-09 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 2e-09 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 2e-09 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 6e-09 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 1e-08 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 1e-07 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 1e-07 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 3e-07 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 7e-07 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 7e-07 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 1e-06 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 1e-06 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 2e-06 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 3e-06 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 1e-05 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 2e-05 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-05 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-05 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 3e-05 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 3e-05 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 6e-05 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 1e-04 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 2e-04 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 3e-04 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 3e-04 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 4e-04 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 4e-04 | |
| COG1541 | 438 | COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme | 4e-04 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 5e-04 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 6e-04 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 0.002 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 0.003 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 768 bits (1985), Expect = 0.0
Identities = 310/459 (67%), Positives = 360/459 (78%), Gaps = 3/459 (0%)
Query: 1 MLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNK-RDMLTADILKGYSLRSLPFT 59
MLVTDE+ SWY ELQ+ +PSL W V L S SS LT ++LK +L +
Sbjct: 107 MLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELD 166
Query: 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIG 119
++WAP+ AV+ICFTSGTTG PKGV ISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIG
Sbjct: 167 YAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIG 226
Query: 120 GLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKG 179
GLSSA+AMLMVGACHV +PKF++K+AL+A++QH VTS+ITVPA+MADL +L R TWK
Sbjct: 227 GLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKV 286
Query: 180 RDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
SV+KILNGGG L S L+ +A FP AKL SAYGMTE SSLTFMTL+DPTLE+P Q
Sbjct: 287 FPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQT 346
Query: 240 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 299
Q +SVHQPQGVCVGKPAPHVELK+ D SS VGRILTRG HVML YW Q
Sbjct: 347 LQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNSET 406
Query: 300 PSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 359
SV + + WLDTGDIG ID GN+WL+GR N RIK+GGENVYPEEVEAVL QHPG+ +V
Sbjct: 407 ASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVV 466
Query: 360 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKA 419
VVG+ ++RLTEMVVACVRLR+ W WS++ ++ + K L LSSE LR HCREKNL+ FK
Sbjct: 467 VVGVPDSRLTEMVVACVRLRDGWIWSDN--EKENAKKNLTLSSETLRHHCREKNLSRFKI 524
Query: 420 PRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458
P+LFV WRKPFPLT+TGKIRRDEVRREV+SHL+SLPSNL
Sbjct: 525 PKLFVQWRKPFPLTTTGKIRRDEVRREVLSHLQSLPSNL 563
|
Length = 563 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 293 bits (752), Expect = 3e-96
Identities = 125/389 (32%), Positives = 186/389 (47%), Gaps = 50/389 (12%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS 123
P+ +I +TSGTTG PKG +++H ++ + +G E D L PL H+ GL
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60
Query: 124 A-MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD- 181
+A L GA V + KF+ +AL +E+ +T+L VP + L + D
Sbjct: 61 GVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPD----FDKFDL 116
Query: 182 -SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
S++ ++GG +P EL++ FP A++ + YGMTETS T + DP + PG
Sbjct: 117 SSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPG--- 173
Query: 241 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQ 295
VG+P P VE+K+ V G I RG VM Y++
Sbjct: 174 -----------------TVGRPLPGVEVKIVDPDGGEVPPGEVGEICVRGYSVMKGYYND 216
Query: 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 355
A + WL TGD+G +D+ G + +VGR I GGEN+YP E+E LL HP +
Sbjct: 217 PEATAEAIDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAV 276
Query: 356 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 415
VVG+ + RL E+V A V L+ L+ E L CR + L
Sbjct: 277 AEAAVVGVPDERLGEVVAAFVVLKP--------------GAT--LTEEELIAFCRGR-LA 319
Query: 416 GFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
FK PR +V + P T++GKI++ ++R
Sbjct: 320 RFKVPR-YVRFVDELPRTASGKIQKFKLR 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 278 bits (714), Expect = 1e-90
Identities = 124/377 (32%), Positives = 175/377 (46%), Gaps = 50/377 (13%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAM-AML 128
I +TSGTTG PKGVV+SH L+ + A +G E DV L PL H+ G S + L
Sbjct: 5 ILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLLGAL 64
Query: 129 MVGACHVFIPKFES-KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 187
+ G V F S LE +EQ+ VT L VP + LA + S++ ++
Sbjct: 65 LAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGY--DLSSLRLLI 122
Query: 188 NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 247
+GG L EL++ P A ++ YG+TETS T P
Sbjct: 123 SGGEPLSPELLERF-EERPGAPILEGYGLTETSVV---------TSTNPDS--------- 163
Query: 248 PNSVHQPQGVCVGKPAPHVELKVCSDGSSH-----VGRILTRGAHVMLRYWDQFLAKPSV 302
+ VG+P P VE++V + VG ++ RG VM YW+ +
Sbjct: 164 ----ELKKPGTVGRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAA 219
Query: 303 STGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVG 362
+T + W TGD+G +D+ G +++ GR IK GGENVYP EVE+VLLQHP + VVG
Sbjct: 220 ATEDGWYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVG 279
Query: 363 IANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRL 422
+ + E +VA V LR +E L+ H RE L +K PR
Sbjct: 280 VPDEDRGERIVAFVVLRPGAD----------------ALAEELKAHLRE-RLAPYKVPR- 321
Query: 423 FVLWRKPFPLTSTGKIR 439
+ + P T++GKI
Sbjct: 322 VIEFVDELPKTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 2e-86
Identities = 124/384 (32%), Positives = 186/384 (48%), Gaps = 52/384 (13%)
Query: 68 VIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAM 127
+I +TSGTTG PKGV+++H L+ ++ +A V DVYL APL H G +
Sbjct: 4 ALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLLPA 63
Query: 128 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SVKK 185
L G V +PKF+ ++ L+ +E+H VT VP + L L + D S++
Sbjct: 64 LAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARY----DLSSLRL 119
Query: 186 ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 245
I+ G +P+EL K A + + YGMTET + T ++ + L G
Sbjct: 120 IIYGAAPMPAEL-KRAMIEWFGPVFVQGYGMTETGPTTTLLSP-EDWLRKLG-------- 169
Query: 246 VTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQFLAKP 300
S VG+P P VE+++ + VG I+ RG VM YW++
Sbjct: 170 ----S--------VGRPVPGVEVRIVDEDGRELPPGEVGEIVVRGPAVMAGYWNR-PEAT 216
Query: 301 SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV 360
+ + + WL TGD+G +D+ G +++V R+ I SGGEN+YP EVE VLL HP + + V
Sbjct: 217 AEALRDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAV 276
Query: 361 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAP 420
+G+ + E VVA V LR L +E L CRE+ L G+K P
Sbjct: 277 IGVPDEEWGEAVVAVVVLRPGAT----------------LDAEELIAFCRER-LAGYKVP 319
Query: 421 RLFVLWRKPFPLTSTGKIRRDEVR 444
+ P ++GKI + E+R
Sbjct: 320 KSVEF-VDELPRNASGKILKRELR 342
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 8e-83
Identities = 138/455 (30%), Positives = 204/455 (44%), Gaps = 54/455 (11%)
Query: 2 LVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHS 61
L+T + LE A+P + + D ++ + +
Sbjct: 114 LITSAEFAA-LLEAVAEALPVVLVVLL----VGDADDRLPITLEALAAEGPGPDADAR-P 167
Query: 62 WAPEGAVIICFTSGTTGSPKGVVISHSALI--VQSLAKIAIVGYGEDDVYLHTAPLCHIG 119
P+ + +TSGTTG PKGVV++H L+ +A G DDV L PL HI
Sbjct: 168 VDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIF 227
Query: 120 GLS-SAMAMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT 176
GL +A L+ G V + F+ + L +E++ VT L VP + +L
Sbjct: 228 GLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDD 287
Query: 177 WKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 236
S++ +L+GG LP EL++ F ++ YG+TETS +T D L P
Sbjct: 288 -DLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPP-DDLLAKP 345
Query: 237 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-----HVGRILTRGAHVMLR 291
G VG+P P VE+++ VG I RG +VM
Sbjct: 346 G--------------------SVGRPLPGVEVRIVDPDGGEVLPGEVGEIWVRGPNVMKG 385
Query: 292 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 351
YW++ A + WL TGD+G +D+ G +++VGR I SGGEN+YPEE+EAVL +
Sbjct: 386 YWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAE 445
Query: 352 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 411
HP + VVG+ + R E VVA V L+ + L++E LR R
Sbjct: 446 HPAVAEAAVVGVPDERWGERVVAVVVLKPGG--------------DAELTAEELRAFLR- 490
Query: 412 KNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446
K L +K PR+ V + P T++GKI R +R E
Sbjct: 491 KRLALYKVPRIVVFVDE-LPRTASGKIDRRALREE 524
|
Length = 534 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 233 bits (597), Expect = 4e-71
Identities = 125/391 (31%), Positives = 178/391 (45%), Gaps = 52/391 (13%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMA 126
A + +TSGTTG PKGVV+SH L + SLA A + DDVYL P+ H+
Sbjct: 169 AAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYL 228
Query: 127 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 186
LM GA V +F+ ++ L+ +E VT VP I L R S++ +
Sbjct: 229 ALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFS--SLRLV 286
Query: 187 LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 246
+ GG LP L++E F L+ YGMTETS ++ + P + PGQ +
Sbjct: 287 IYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLP---PEDQLPGQWTKR---- 338
Query: 247 TPNSVHQPQGVCVGKPAPHVELKVC--------SDGSSHVGRILTRGAHVMLRYWDQFLA 298
G+P P VE ++ DG VG I+ RG +M YW++ A
Sbjct: 339 ----------RSAGRPLPGVEARIVDDDGDELPPDGGE-VGEIIVRGPWLMQGYWNRPEA 387
Query: 299 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 358
G WL TGD+G ID+ G +++ R I SGGEN+YP E+E L HP + +
Sbjct: 388 TAETIDGG-WLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEV 446
Query: 359 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK 418
V+G+ + + E VA V L+ L ++ LR R + L FK
Sbjct: 447 AVIGVPDEKWGERPVAVVVLKPGAT----------------LDAKELRAFLRGR-LAKFK 489
Query: 419 APR--LFVLWRKPFPLTSTGKIRRDEVRREV 447
P+ FV P TS GKI + +R +
Sbjct: 490 LPKRIAFV---DELPRTSVGKILKRVLREQY 517
|
Length = 521 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 225 bits (577), Expect = 2e-69
Identities = 121/387 (31%), Positives = 180/387 (46%), Gaps = 57/387 (14%)
Query: 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL 121
A II FTSG+TG PK VV + + + +G DD +L + PL H+ GL
Sbjct: 75 DLDRPATII-FTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHVSGL 133
Query: 122 SSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIR-VKKTWKG- 179
+ M L+ G V KF++++ EA+E H VT + VP L R ++
Sbjct: 134 AIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPT------QLQRLLESLGARW 187
Query: 180 RDSVKKILNGGGGLPSELMKEATN-SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 238
S++ +L GG +P L+++A P L YGMTET+S + TL+
Sbjct: 188 LSSLRAVLLGGAPIPPSLLEQARQRGIP---LYPTYGMTETASQVA-------TLK---- 233
Query: 239 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLA 298
P F + VGKP P EL++ + G IL RG + L Y Q
Sbjct: 234 -PDDFLAKLGS---------VGKPLPGRELRIVNPQ---DGEILVRGPSLFLGYLPQGGL 280
Query: 299 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 358
P + + W TGD+G +D G ++++GRR+ I SGGEN+YPEE+EAVLLQHP +
Sbjct: 281 TPPL-DEDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEA 339
Query: 359 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK 418
VVG+ + + VA V + +S E L+ +K L +K
Sbjct: 340 AVVGVPDDEWGQRPVAFVVPNDD-----------------PVSVEELQAFLADK-LAKYK 381
Query: 419 APRLFVLWRKPFPLTSTGKIRRDEVRR 445
P+ + P ++GKI R +R+
Sbjct: 382 RPKRWYPLP-ELPRNASGKIDRAALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 5e-67
Identities = 90/306 (29%), Positives = 137/306 (44%), Gaps = 32/306 (10%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS 123
P+ I +TSGTTG PKGV+++H L+ + G D L PL G +
Sbjct: 130 PDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLLPLHFDGSVWE 189
Query: 124 AMAMLMVGACHVFIPKFES--KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 181
L+ G V +PKF L+ +E++ VT L VP ++ L KK
Sbjct: 190 IFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLLKAPEEKK--YDLS 247
Query: 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 241
S++ +L+GG LP EL++ F L++ YG TET+ T DP ++
Sbjct: 248 SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKP------ 301
Query: 242 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQF 296
+G+P P VE+KV + V G + RG V Y +
Sbjct: 302 ---------------GSIGRPLPGVEVKVLDEEGEPVPPGEVGELCIRGPGVARGYLNDP 346
Query: 297 LAKPSVSTGEVWL--DTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 354
+ W TGD+G D+ G + ++GR++ ++K GE + P E+EAVLL+HPG
Sbjct: 347 ELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPG 406
Query: 355 IIGIVV 360
+ V
Sbjct: 407 VAEAAV 412
|
Length = 412 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 2e-66
Identities = 127/394 (32%), Positives = 181/394 (45%), Gaps = 69/394 (17%)
Query: 67 AVIICFTSGTTGSPKGVVISH---SALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS 123
AV+ +T GTTG PKG +++H A + Q A + + GED +L PL HI GL+
Sbjct: 128 AVLQ-YTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGED-RFLTALPLFHIFGLTV 185
Query: 124 AM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDS 182
M L +GA +V +P F + L+ ++++ T VP + L KK S
Sbjct: 186 NMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFS--S 243
Query: 183 VKKILNGGGGLPSELM---KEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
++ ++GG LP E+ +E T A L+ YG+TETS T P
Sbjct: 244 LRLCISGGAPLPVEVAERFEEKTG----APLVEGYGLTETSPVTTV---------NPLDG 290
Query: 240 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWD 294
+ G++ G P P E+K+ D VG ++ RG VM YW+
Sbjct: 291 ERKPGSI-------------GLPLPGTEVKIVDDEGNELPPGEVGELVVRGPQVMKGYWN 337
Query: 295 QFLAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 350
+ P T EV WL TGDIG +D+ G ++V R+ I GG NVYP E+E VL
Sbjct: 338 R----PE-ETAEVLTDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLY 392
Query: 351 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCR 410
HP ++ VVG+ + E V A V L+E S L+ E L CR
Sbjct: 393 SHPAVLEAAVVGVPDPYRGEAVKAFVVLKE---------GAS-------LTEEELIAFCR 436
Query: 411 EKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
E+ L +K PR R P ++ GKI R E+R
Sbjct: 437 ER-LAAYKVPRQVEF-RDELPKSAVGKILRRELR 468
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 4e-62
Identities = 120/389 (30%), Positives = 182/389 (46%), Gaps = 59/389 (15%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLM 129
I +TSG+TG PKGV++SH L + + + EDD L P GLS +
Sbjct: 7 IIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGLSQLLTAFR 66
Query: 130 VGACHVFIPKFE-SKSALEAVEQHCVTSLITVP---AIMADLATLIRVKKTWKGRDSVKK 185
VG V +F + L+ + + +T VP A + L L R S++
Sbjct: 67 VGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDF-----PSLRY 121
Query: 186 ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 245
+ N GG LP++ + + +FP AKL S YG+TE F + Y P P +L +
Sbjct: 122 LTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEA-----FRSTYLP----PEEL-----D 167
Query: 246 VTPNSVHQPQGVCVGKPAPHVELKVC-SDGSSH----VGRILTRGAHVMLRYWDQFLA-- 298
P+S+ GK P+VEL V DG+ VG ++ RGA+VM YW+ A
Sbjct: 168 RRPDSI--------GKAIPNVELWVVDEDGNRCAPGEVGELVHRGANVMKGYWNDPEATA 219
Query: 299 ---KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 355
+P GE+ L TGD+ +D+ G ++ VGR++ IK+ G V P E+E V+ HP +
Sbjct: 220 ERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLV 279
Query: 356 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 415
V+G+ + L + +VA V S + E L E+L+ HCR K+L
Sbjct: 280 AEAAVIGVPDPLLGQAIVAVV---------------VSADGESLDEKELLK-HCR-KHLP 322
Query: 416 GFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
+ P V + P + GK+ R +R
Sbjct: 323 NYMVPAEIV-FVDSLPKNANGKVDRSALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 7e-58
Identities = 112/399 (28%), Positives = 176/399 (44%), Gaps = 58/399 (14%)
Query: 58 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH 117
F ++ P+ ++ +TSGTTG PKGV+ +H+ L+ + + + +G DDV L +PL H
Sbjct: 86 FDYAAMPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPSPLAH 145
Query: 118 IGGLSSAMAM-LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT 176
I G + + L++GA V +++ ALE + +H VT + +ADL
Sbjct: 146 ITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAAADAA-- 203
Query: 177 WKGRD--SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLE 234
G D S++ L GG +P EL + A + AK++ AYGMTE
Sbjct: 204 --GPDLPSLRVFLCGGAPVPRELARRAAEALG-AKVVRAYGMTEV--------------- 245
Query: 235 TPGQLPQAFGNVTPNSVHQPQGVCV---GKPAPHVELKVCSDGSSHV-----GRILTRGA 286
VT + P G+P P VE+++ D + V G + RG
Sbjct: 246 ---------PLVTVGTPDDPDDKRAATDGRPVPGVEVRIVDDDGNDVPPGEEGELQVRGP 296
Query: 287 HVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE 346
+ L Y D T + W TGD+G +D G + + GR+ I GGEN+ E+E
Sbjct: 297 QLFLGYLDPPDNT-EAFTDDGWFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIE 355
Query: 347 AVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 406
+LL+HP + + VV + + RL E V A V L+ L
Sbjct: 356 DLLLRHPAVAEVAVVAMPDERLGERVCAVVVPAPGAS----------------LTLAELT 399
Query: 407 QHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445
+H + L K P + P T +GK+++ E+R
Sbjct: 400 EHLAAQGLAKQKWPERLEVVDA-LPRTPSGKVQKFELRE 437
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 1e-56
Identities = 108/383 (28%), Positives = 167/383 (43%), Gaps = 55/383 (14%)
Query: 69 IICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA-MAM 127
+I +TSGTTG PKGVV++H L + A + + DV LH PL H+ GL +A
Sbjct: 92 LIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNALHCP 151
Query: 128 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI- 186
L GA F+P+F+ + +T + VP I L L + + + +
Sbjct: 152 LWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRL--LEHYEFDDAAAAAARNLR 209
Query: 187 --LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 244
++G LP +++ L+ YGMTET M L +P G
Sbjct: 210 LFVSGSAALPVPVLERWEERTGHT-LLERYGMTETG-----MALSNPLD----------G 253
Query: 245 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS------HVGRILTRGAHVMLRYWDQFLA 298
P + VG P P VE+++ + VG I RG +V YW++ A
Sbjct: 254 ERRPGT--------VGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEA 305
Query: 299 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGR-RNGRIKSGGENVYPEEVEAVLLQHPGIIG 357
T + W TGD+G +D+ G ++GR + IKSGG V E+E LL+HPG+
Sbjct: 306 TAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAE 365
Query: 358 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF 417
+ V+G+ + E VVA V + + LR REK L +
Sbjct: 366 VAVIGVPDPDWGEAVVAVVVPEAGAALTLAE----------------LRAWAREK-LAPY 408
Query: 418 KAPRLFVLWRKPFPLTSTGKIRR 440
K P+ ++ + P + GK+++
Sbjct: 409 KIPKRVIVVDE-LPRNAMGKVQK 430
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 2e-55
Identities = 110/395 (27%), Positives = 171/395 (43%), Gaps = 69/395 (17%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAM- 125
A I+ FTSGTTG PKG +++H L+ + +G E D YL P H+ G + +
Sbjct: 169 ADIL-FTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVN 227
Query: 126 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAI-----------MADLATLIRVK 174
A LM GA + +P F+ +E +T L P + DL++L R+
Sbjct: 228 APLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSL-RLA 286
Query: 175 KTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLE 234
T G +P L++ + +++ YG++E S TF L D
Sbjct: 287 VT------------GAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKT 334
Query: 235 TPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVM 289
G +G VE K+ ++ VG +L RG +VM
Sbjct: 335 VAGT--------------------IGTAIAGVENKIVNELGEEVPVGEVGELLVRGPNVM 374
Query: 290 LRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 349
Y+D A + + WL TGD+G +D+ G +++V R+ GG NVYP EVE VL
Sbjct: 375 KGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVL 434
Query: 350 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHC 409
+HP + V+G+ + RL E+ A V L+ + L+ E L +C
Sbjct: 435 YEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAE----------------LTEEELIAYC 478
Query: 410 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
RE L +K PR + + P +TGK+ + +R
Sbjct: 479 REH-LAKYKVPR-SIEFLDELPKNATGKVLKRALR 511
|
Length = 513 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 2e-55
Identities = 119/382 (31%), Positives = 172/382 (45%), Gaps = 55/382 (14%)
Query: 68 VIICFTSGTTGSPKGVVISHSALIV---QSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 124
+ ++SGTTG PKGV++SH +I Q + +DV L P H GL++
Sbjct: 149 AALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTT 208
Query: 125 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 182
+A L+ GA + +PKF+S++ L+ +E++ VTSL VP I LA V K D S
Sbjct: 209 LASLLCGATVIIMPKFDSETFLKLIEKYKVTSLFLVPPIAVALAKSPLVDKY----DLSS 264
Query: 183 VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 242
++ I +G L EL +E FP + YGMTET + T
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTP--------------- 309
Query: 243 FGNVTPNSVHQPQGVCVGKPAPHVELK-VCSDGSSHVGR-----ILTRGAHVMLRYWDQF 296
G+ P SV G+ P+VE K V DG +G + +G +M Y +
Sbjct: 310 PGDEKPGSV--------GRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNP 361
Query: 297 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 356
A + WL TGDIG D+ GN ++V R+ IK G V P E+EAVLL+HP +
Sbjct: 362 EATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVA 421
Query: 357 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 416
V+GI + E+ A V L K L EV + K +
Sbjct: 422 DAAVIGIPDEVAGELPRAYVVL---------------KPGSKLTEQEV--KDYVAKKVAK 464
Query: 417 FKAPRLFVLWRKPFPLTSTGKI 438
+K R V++ P + +GKI
Sbjct: 465 YKQLRGGVVFVDEIPKSPSGKI 486
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 4e-55
Identities = 108/388 (27%), Positives = 164/388 (42%), Gaps = 65/388 (16%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAML 128
I +TSGTTG PKGV+++H+ L+ + ++G DDV L PL HI + S A L
Sbjct: 86 ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAYSVYAAL 145
Query: 129 MVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI-L 187
+VGA V +P+F + + V +H T + A+ A L K+ D +
Sbjct: 146 LVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILM-----KQPPSPDDRDHPLRF 200
Query: 188 NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 247
G LP+ + F KL+ YGMTET + + DP PG
Sbjct: 201 VFGAPLPAAIWPAFEERF-GVKLVEGYGMTETG--VPIIAPGDPA--PPG---------- 245
Query: 248 PNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAH---VMLRYWDQFLAK 299
G+P P VE+++ + V G ++ R + Y+
Sbjct: 246 ----------SCGRPRPGVEVRIVDEDGREVPPGEVGELVVRPRRPWAMFKGYYG----M 291
Query: 300 PSVSTGEV---WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 356
P + W TGD G D+ G ++ V R+ I+ GEN+ EVEA +L HP +
Sbjct: 292 PEATAKAWRNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVA 351
Query: 357 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 416
VV + + + V A V LR ++ L E L + CR+ L
Sbjct: 352 EAAVVAVPSELGEDEVKAVVVLRP---------GET-------LDPEALLEFCRD-RLPY 394
Query: 417 FKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
F PR ++ + P T T KI++ E+R
Sbjct: 395 FMVPR-YIEFVDELPKTPTEKIQKAELR 421
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 2e-54
Identities = 118/404 (29%), Positives = 178/404 (44%), Gaps = 55/404 (13%)
Query: 41 DMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI 100
+ D ++ + S+ + + FTSGTTG PK V + ++
Sbjct: 87 QADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKEN 146
Query: 101 VGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITV 160
+G+ EDD +L + PL HI GLS L+ GA + KF LE + VT + V
Sbjct: 147 LGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF--NQLLEMIANERVTHISLV 204
Query: 161 PAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA-TNSFPKAKLISAYGMTET 219
P L R+ ++++KIL GG +P+ L++EA P + +YGMTET
Sbjct: 205 PT------QLNRLLDEGGHNENLRKILLGGSAIPAPLIEEAQQYGLP---IYLSYGMTET 255
Query: 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVG 279
S +T T VG+P E+K+ D G
Sbjct: 256 CSQVT-------TATPEML---------------HARPDVGRPLAGREIKIKVDNKEGHG 293
Query: 280 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGEN 339
I+ +GA++M Y Q P+ + W +TGDIG +D G ++++GRR+ I SGGEN
Sbjct: 294 EIMVKGANLMKGYLYQGELTPAFEQ-QGWFNTGDIGELDGEGFLYVLGRRDDLIISGGEN 352
Query: 340 VYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELL 399
+YPEE+E VL QHPGI VVV +A ++ VA +
Sbjct: 353 IYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDI----------------- 395
Query: 400 LSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 443
S L + EK L +K P F + P ++GKI R+++
Sbjct: 396 -SQAKLIAYLTEK-LAKYKVPIAFEKLDE-LPYNASGKILRNQL 436
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 5e-53
Identities = 135/452 (29%), Positives = 208/452 (46%), Gaps = 54/452 (11%)
Query: 14 ELQHTAIPSLRWHVSLG-SSSSDFVNKRDMLTADILKGYSLRSL-PFTHSWAPEGAVIIC 71
L +P LR VSL + F+ ++ + S +L S + + I
Sbjct: 150 ALACERLPELRGVVSLAPAPPPGFLAWHELQARG--ETVSREALAERQASLDRDDPINIQ 207
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAI-VGYGEDDVYLHTAPLCH-IGGLSSAMAMLM 129
+TSGTTG PKG +SH I+ + +A +G E D PL H G + + + +
Sbjct: 208 YTSGTTGFPKGATLSHHN-ILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMT 266
Query: 130 VGACHVF-IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILN 188
VGAC V+ F+ + L+AVE+ T+L VP + +A L ++ S++ +
Sbjct: 267 VGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF--IAELDHPQRGNFDLSSLRTGIM 324
Query: 189 GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 248
G P E+M+ + A++ AYGMTETS ++ T LE V
Sbjct: 325 AGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSP-VSLQTTAADDLER---------RVE- 373
Query: 249 NSVHQPQGVCVGKPAPHVELKVC-SDGSS----HVGRILTRGAHVMLRYWDQFLAKPSVS 303
VG+ PH+E+KV DG++ +G + TRG VM YW+ A
Sbjct: 374 ---------TVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESI 424
Query: 304 TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 363
+ W+ TGD+ ++D+ G V +VGR I GGEN+YP E+E L HP + + V G+
Sbjct: 425 DEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGV 484
Query: 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLF 423
+ + E +VA VRL SE E LR+ C+ + + FK PR F
Sbjct: 485 PDEKYGEEIVAWVRLHPGHAASE----------------EELREFCKAR-IAHFKVPRYF 527
Query: 424 VLWRKPFPLTSTGKIRRDEVRREVMSHLKSLP 455
+ FP+T TGK+++ RE+ +LP
Sbjct: 528 RFVDE-FPMTVTGKVQK-FRMREISIEELALP 557
|
Length = 558 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 9e-53
Identities = 119/392 (30%), Positives = 187/392 (47%), Gaps = 71/392 (18%)
Query: 70 ICFTSGTTGSPKGVVIS---HSALIVQSLAKIAI-VGYGEDDVYLHTAPLCHIGGLSSAM 125
I +TSGTTG PKGV+ + H V S A+ +G EDD +L P+ HI GLS M
Sbjct: 146 IMYTSGTTGKPKGVIQTYGNHWWSAVGS----ALNLGLTEDDCWLAAVPIFHISGLSILM 201
Query: 126 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR--DSV 183
++ G V + KF+++ + ++ VT + V ++ L +++ +G S
Sbjct: 202 RSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRL-----LERLGEGTYPSSF 256
Query: 184 KKILNGGGGLPSELMKEATNSFPKAK---LISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
+ +L GGG P L+++ K K + +YGMTET+S + +TL
Sbjct: 257 RCMLLGGGPAPKPLLEQC-----KEKGIPVYQSYGMTETASQI--VTL------------ 297
Query: 241 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SSHVGRILTRGAHVMLRYWDQF 296
+P G GKP ELK+ DG G I+ +G +V Y ++
Sbjct: 298 ------SPEDALTKLG-SAGKPLFPCELKIEKDGVVVPPFEEGEIVVKGPNVTKGYLNRE 350
Query: 297 LA-KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 355
A + + G W TGDIG +D+ G ++++ RR+ I SGGEN+YP E+E VLL HPG+
Sbjct: 351 DATRETFQDG--WFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGV 408
Query: 356 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 415
VVG+ + + ++ VA V ++ E LR C EK L
Sbjct: 409 AEAGVVGVPDDKWGQVPVAFVVKSGE------------------VTEEELRHFCEEK-LA 449
Query: 416 GFKAPRLFVLWRKPFPLTSTGKIRRDEVRREV 447
+K P+ F + P ++GK+ R E+++ V
Sbjct: 450 KYKVPKRFYFVEE-LPRNASGKLLRHELKQLV 480
|
Length = 483 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 6e-52
Identities = 116/414 (28%), Positives = 172/414 (41%), Gaps = 78/414 (18%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-S 122
P+ + +TSGTTG+PKGV+++H L+ Q+ A + ++ D L PL H+
Sbjct: 87 PDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAHVFEQRL 146
Query: 123 SAMAMLMVGACHVFIPKFES-KSALEAVEQHCVTSLITVP--------AIMADLATLIRV 173
L GA F E+ L V T VP I A +A +
Sbjct: 147 GEYLPLSSGARVNFAESPETLLEDLREVR---PTVFFAVPRVWEKIYAGIEAKVAAAGPL 203
Query: 174 KK----TWKGRDSVKKILNGGGGLPSELMKEATNSFPKA---KLISAYGMTETSSSLTFM 226
K+ G ++ ++GG LP E+++ F +A ++ YG+TETS T
Sbjct: 204 KRKLFRWALGGGRLRFAVSGGAPLPPEVLE-----FFRALGIPILEGYGLTETSGVATVN 258
Query: 227 TLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGA 286
D + T VGKP P VE+++ DG IL RG
Sbjct: 259 RPGDIRIGT-----------------------VGKPLPGVEVRIAEDGE-----ILVRGP 290
Query: 287 HVMLRYWDQFLAKPSVSTGEV-----WLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENV 340
+VM Y+ K +T E WL TGDIG +D+ G + + R+ I +GG+N+
Sbjct: 291 NVMKGYY-----KNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNI 345
Query: 341 YPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACV-RLRESWQWSESNCDQSSKNKELL 399
P+ +E L P I VVVG LT ++V L + W+E + + +L
Sbjct: 346 APQPIENALKASPYISQAVVVGDDRPYLTALIVLDPEALEK---WAEQHGLPFTTYADLA 402
Query: 400 LSSEVLRQHCRE-----KNLTGFKAPRLFVLWRKPF-----PLTSTGKIRRDEV 443
EV +E L + + FVL K F LT T K+RR V
Sbjct: 403 EDPEVRALIRKEVEEANARLARVEQIKKFVLLPKEFSIEDGELTPTMKLRRRVV 456
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 6e-51
Identities = 115/384 (29%), Positives = 162/384 (42%), Gaps = 51/384 (13%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS 123
P+ +I TSGTTG PKGV ++H L+ + D L+ PL HI GL
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIV 60
Query: 124 A-MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAI-MADLATLIRVKKTWKGRD 181
+ +A L+ G V PKF + + + ++ VT VP I L T K
Sbjct: 61 SLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPG--KPPP 118
Query: 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 241
++ I + LP ++ F ++ AYGMTE + Q
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRF-GVPVLEAYGMTEAA-------------------HQ 158
Query: 242 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-----HVGRILTRGAHVMLRYWDQF 296
N P V +P V G+PA VE+ + D G I+ RG +V Y +
Sbjct: 159 IASNPLPPLVRKPGSV--GRPAG-VEVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNP 215
Query: 297 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 356
A + + W TGD+G +D+ G ++L GR I GGE + P EVE VLL+HP +
Sbjct: 216 EAN-REAFRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVA 274
Query: 357 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 416
VV G+ + E V A V LR +S E LR R K L
Sbjct: 275 EAVVFGVPDELYGEEVAAAVVLRA-----DSKVTI-----------EELRDFAR-KRLAA 317
Query: 417 FKAPRLFVLWRKPFPLTSTGKIRR 440
FK P+ L+ P +TGKI+R
Sbjct: 318 FKVPKKI-LFVDALPKGATGKIQR 340
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 1e-50
Identities = 104/391 (26%), Positives = 171/391 (43%), Gaps = 70/391 (17%)
Query: 69 IICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAM-AM 127
+I +TSGTTG PKG + +H ++ + A A G D V L PL H+ G+ +M A
Sbjct: 88 VIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQGSMNAP 147
Query: 128 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SVKK 185
+ GA V + +++ ++A A+E++ VT + ++ DL R D S+K
Sbjct: 148 IYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRFAD----YDLSSLKV 203
Query: 186 ILNGGGGLP---SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 242
+ GG LP +E +K T YG+TET + F P
Sbjct: 204 VGGGGAALPPAVAERLKALTG----LLYEEGYGLTETHTCTHF---------NPPD---- 246
Query: 243 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSD------GSSHVGRILTRGAHVMLRYWDQF 296
+P+ C+G P + +V G I+ RG V YW+
Sbjct: 247 ----------RPKPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWN-- 294
Query: 297 LAKPSVS-------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 349
+P + G+ + TGD+G ID+ G + + R I G V+P EVEA+L
Sbjct: 295 --RPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALL 352
Query: 350 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHC 409
QHP ++ + V+G + R E+V A V L+ ++ ++ E + + C
Sbjct: 353 YQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGK--------------VTEEDIIEWC 398
Query: 410 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
RE + +K PR+ + + P T++GK+
Sbjct: 399 RE-RMAAYKYPRI-IEFVDELPKTASGKVLW 427
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 1e-50
Identities = 115/385 (29%), Positives = 177/385 (45%), Gaps = 54/385 (14%)
Query: 69 IICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAM 127
IIC+TSGTTG PKG V++ + +L + D + PL HIGG+ A
Sbjct: 153 IICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPT 212
Query: 128 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 187
L G + KFE AL +E+H VT ++ VP I L + + T SV+
Sbjct: 213 LFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETT--NLQSVRWFY 270
Query: 188 NGGGGLPSELMKE-ATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 246
NGG P ELM+E F + +GMTETS ++ FM + G
Sbjct: 271 NGGAPCPEELMREFIDRGFLFGQ---GFGMTETSPTV-FMLSEEDARRKVGS-------- 318
Query: 247 TPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQFLA-KP 300
+GKP + ++ + VG +L RG +VM YW++ A +
Sbjct: 319 ------------IGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEE 366
Query: 301 SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV 360
++ G WL TGD+ +D+ G V++VGR+ I SGGEN+YP EVE V+ + + + V
Sbjct: 367 TIQDG--WLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAV 424
Query: 361 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAP 420
VG + + E+ +A + + S +L + + +HCR L +K P
Sbjct: 425 VGRQHVKWGEIPIAFIVKKSS----------------SVLIEKDVIEHCRLF-LAKYKIP 467
Query: 421 RLFVLWRKPFPLTSTGKIRRDEVRR 445
+ V K P +TGKI++ ++
Sbjct: 468 KEIVFL-KELPKNATGKIQKAQLVN 491
|
Length = 496 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 7e-50
Identities = 103/332 (31%), Positives = 152/332 (45%), Gaps = 36/332 (10%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHIGGLSS- 123
+ ++SGTTG KGV+++H LI +A G + +DV L P+ HI GL+
Sbjct: 160 VAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVI 219
Query: 124 AMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD-- 181
+A+L +GA V +P+F+ + L A+E++ VT L VP I+ L V K D
Sbjct: 220 LLALLRLGATVVVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDK----YDLS 275
Query: 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 241
S+K+I +G L EL + FP +L YGMTE+S T
Sbjct: 276 SLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMC--------------- 320
Query: 242 AFGNVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQ 295
P P+ VG+ P+VE K+ S + G + RG VM Y +
Sbjct: 321 ------PVPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVRGPQVMKGYLNN 374
Query: 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 355
A + WL TGD+G D+ G +++V R IK G V P E+EA+LL HP I
Sbjct: 375 PEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEI 434
Query: 356 IGIVVVGIANARLTEMVVACVRLRESWQWSES 387
V+ + E+ +A V + + SE
Sbjct: 435 ADAAVIPYPDEEAGEIPMAFVVRQPGSELSED 466
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 4e-49
Identities = 111/412 (26%), Positives = 160/412 (38%), Gaps = 58/412 (14%)
Query: 43 LTADILKGYSLRSLPFT-HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV 101
+ AD G+ +L P+ A+ + GTTG PK + +H+ + + A
Sbjct: 117 IIADRFSGFDYAALARELLEELPDVALF-QLSGGTTGLPKLIPRTHNDYLYSARASAEAC 175
Query: 102 GYGEDDVYLHTAPLCHIGGLSS--AMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLIT 159
G VYL P H LSS + L+ G V A +E+ VT
Sbjct: 176 GLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTAL 235
Query: 160 VPAIMADLATLIRVKKTWKGRD--SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217
VPA L L W D S++ I GG L EL + L +GM
Sbjct: 236 VPA----LLNLWLEAAEWDQADLSSLRVIQVGGAPLSPELARRVEERLGC-PLQQVFGMA 290
Query: 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDGSS 276
E + + L DP P+ + + QG +P P E+++ D
Sbjct: 291 E--GLVNYTRLDDP----------------PDVIMRTQG----RPISPADEIRIVDDQGE 328
Query: 277 -----HVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNG 331
VG +LTRG + + Y+ T + + TGD+ ID G +VGR
Sbjct: 329 PVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGYYRVVGRIKD 388
Query: 332 RIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQ 391
+I GGE + PEE+E +LL HP + VVG+ + L E + A V R
Sbjct: 389 QINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAA-------- 440
Query: 392 SSKNKELLLSSEVLRQHCREKNLTGFKAP-RLFVLWRKPFPLTSTGKIRRDE 442
+ LR RE+ L FK P RL V+ PLT GK+ +
Sbjct: 441 --------PTLAELRAFLREQGLAKFKLPDRLEVV--DSLPLTPVGKVDKKA 482
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 174 bits (445), Expect = 8e-49
Identities = 135/492 (27%), Positives = 202/492 (41%), Gaps = 122/492 (24%)
Query: 6 ESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDML-TADILKGYSLRSLP----FTH 60
E + +LQ +P LR + LG ML ++L
Sbjct: 140 ELATCEPGQLQSARLPELRRVIFLGDEKH-----PGMLNFDELLALGRAVDDAELAARQA 194
Query: 61 SWAPEGAVIICFTSGTTGSPKGVVISHS------ALIVQSLAKIAIVGYGEDDVYLHTAP 114
+ P+ + I +TSGTTG PKG ++H I +++ E+D P
Sbjct: 195 TLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM------KLTEEDRLCIPVP 248
Query: 115 LCHIGGLSSA-MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAI--------- 163
L H G+ +A + GA V+ F+ + L AVE+ T+L VP +
Sbjct: 249 LYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPD 308
Query: 164 --MADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSS 221
DL++L +T G I+ G P E+MK + +++ AYGMTETS
Sbjct: 309 FARFDLSSL----RT--G------IM-AGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSP 355
Query: 222 SLTFMTLYDPTLE----TPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH 277
++ T D LE T VG+ PH+E+K+ +
Sbjct: 356 -VSTQTRTDDPLEKRVTT-----------------------VGRALPHLEVKIVDPETGE 391
Query: 278 V------GRILTRGAHVMLRYWDQFLAKPSVSTGEV-----WLDTGDIGSIDDGGNVWLV 326
G + TRG VM YW+ T E W+ TGD+ +D+ G V +V
Sbjct: 392 TVPRGEQGELCTRGYSVMKGYWND-----PEKTAEAIDADGWMHTGDLAVMDEEGYVNIV 446
Query: 327 GRRNGRIKS----GGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESW 382
GR IK GGEN+YP E+E L HP I + VVG+ + + E V A + LR
Sbjct: 447 GR----IKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRP-- 500
Query: 383 QWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR--LFVLWRKPFPLTSTGKIRR 440
+ L+ E +R CR K + +K PR FV FP+T TGKI++
Sbjct: 501 -------GAT-------LTEEDVRDFCRGK-IAHYKIPRYIRFV---DEFPMTVTGKIQK 542
Query: 441 DEVRREVMSHLK 452
++R ++ L
Sbjct: 543 FKMREMMIEELG 554
|
Length = 559 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 1e-48
Identities = 124/408 (30%), Positives = 178/408 (43%), Gaps = 70/408 (17%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSAL---IVQSLAKIAIVGYGEDDVYLHTAPLCHIG 119
P+ +I +TSGTTG PKG ++H L Q A + +G G + L P+ H
Sbjct: 217 TPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDG-PERVLAALPMFHAY 275
Query: 120 GLSSAMAM-LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWK 178
GL+ + + + +G V +P + L+A+++H T L VP + +A +
Sbjct: 276 GLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEER---- 331
Query: 179 GRD--SVKKILNGGGGLP---SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTL 233
G D V+ +G LP EL ++ T L+ YG+TETS
Sbjct: 332 GVDLSGVRNAFSGAMALPVSTVELWEKLTGGL----LVEGYGLTETS------------- 374
Query: 234 ETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS---------DGSSHVGRILTR 284
P GN P S + G VG P P E+++ DG G +L R
Sbjct: 375 ------PIIVGN--PMSDDRRPGY-VGVPFPDTEVRIVDPEDPDETMPDGEE--GELLVR 423
Query: 285 GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEE 344
G V YW++ W TGD+ +++ G + +V R I +GG NVYP E
Sbjct: 424 GPQVFKGYWNRPEETAKSFLDG-WFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAE 482
Query: 345 VEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEV 404
VE VL +HPG+ VVG+ +E VVA V L E L E
Sbjct: 483 VEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVL-------EPGAA---------LDPEG 526
Query: 405 LRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452
LR +CRE +LT +K PR F + P GK+RR EVR E++ L
Sbjct: 527 LRAYCRE-HLTRYKVPRRFYHVDE-LPRDQLGKVRRREVREELLEKLG 572
|
Length = 573 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 7e-48
Identities = 114/383 (29%), Positives = 171/383 (44%), Gaps = 47/383 (12%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV---GYGEDDVYLHTAPLCHIGGLSS 123
A +C+TSGTTG+PKGVV SH +L++ +LA A+ G E D L P+ H+
Sbjct: 164 AAGLCYTSGTTGNPKGVVYSHRSLVLHTLA-SALPDSLGLSESDTVLPVVPMFHVNAWGL 222
Query: 124 AMAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDS 182
A MVGA V + S L+ +E+ VT VP I L ++ K S
Sbjct: 223 PYAATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLN--YLEANGKDLSS 280
Query: 183 VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 242
+++++ GG LP L+++ ++I A+GMTETS T L P L LP+
Sbjct: 281 LRRVVVGGSALPRSLIEKLEERG--VEVIHAWGMTETSPLGTVSRL-KPHLV---DLPEE 334
Query: 243 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-------HVGRILTRGAHVMLRYWDQ 295
+ Q G+P P VEL++ D + VG ++ RG V Y+
Sbjct: 335 ----EKLELRAKQ----GRPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKD 386
Query: 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 355
K T + W TGD+ ID+ G + + R IKSGGE + E+E L+ HP +
Sbjct: 387 -PEKTEELTRDGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAV 445
Query: 356 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 415
VVG+ + + E +A V L+ + ++ E L +H +K +
Sbjct: 446 AEAAVVGVPHEKWGERPLAVVVLKPGAK----------------VTEEELLEHLAKK-VA 488
Query: 416 GFKAPRLFVLWRKPFPLTSTGKI 438
+ P V P TS GK
Sbjct: 489 KWWLPDRVVF-VDEIPKTSVGKF 510
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 5e-44
Identities = 101/326 (30%), Positives = 157/326 (48%), Gaps = 43/326 (13%)
Query: 69 IICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYG-EDDVYLHTAPLCHIGGLSSAMAM 127
+I +TSGTTG PKG V++H+ L Q++ + G DV PL HI G+ S +
Sbjct: 178 LIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPG 237
Query: 128 LMVGACHVFIP--KFESKSALEAVEQHCVTSLITVP----AIMADLATLIRVKKTWKGRD 181
L++GA V P F+ L+ +E VT + VP A+ A+ + + RD
Sbjct: 238 LLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAE--------QQARPRD 289
Query: 182 SVKKILNGGGGLPSE-LMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
++L+ G S+ L+++ +FP+A++++A+G TE S +T M L + + G
Sbjct: 290 LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSP-VTCMLLGEDAIRKLGS-- 346
Query: 241 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-----HVGRILTRGAHVMLRYWDQ 295
VGK P V +V + + VG I+ R +M YW+
Sbjct: 347 ------------------VGKVIPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNN 388
Query: 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 355
A G W +GD+ D+ G VW+V R+ I SGGEN+Y EVE VL HP I
Sbjct: 389 PEATAEAFAGG-WFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDI 447
Query: 356 IGIVVVGIANARLTEMVVACVRLRES 381
+ + V+G A+ + E+ VA +R
Sbjct: 448 VEVAVIGRADEKWGEVPVAVAAVRND 473
|
Length = 542 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 8e-43
Identities = 110/401 (27%), Positives = 165/401 (41%), Gaps = 71/401 (17%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMA 126
+ + +TSGTTG+PKGVV +H + +L + G + VYL T P+ H G A
Sbjct: 169 PISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLWTLPMFHCNGWCFPWA 228
Query: 127 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 186
+ VG HV + K ++ + + +E+H VT L P ++ LA ++ K
Sbjct: 229 ITAVGGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLAN---------APEADKLP 279
Query: 187 LNG------GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
L G P + + ++ YG+TET +T + P + LP
Sbjct: 280 LPRPVRVMTAGAPPPPAVIKKMEEL-GFEVTHVYGLTETYGPITV-CEWKPEWDA---LP 334
Query: 241 ----------QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVML 290
Q V V V P V DG + +G I+ RG VM
Sbjct: 335 AEERARLKARQGVRYVGLE------EVDVVDP--ETMKDVPRDGKT-IGEIVMRGNTVMK 385
Query: 291 RYWDQFLAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE 346
Y+ K +T E W +GD+ + G + + R I SGGEN+ EVE
Sbjct: 386 GYY-----KNPEATEEAFAGGWFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVE 440
Query: 347 AVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 406
VL +HP ++ VV + + E A V L+ +E E L
Sbjct: 441 GVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTE----------------EELI 484
Query: 407 QHCREKNLTGFKAPRL--FVLWRKPFPLTSTGKIRRDEVRR 445
++CREK L FK P+ FV P T+TGKI++ +R
Sbjct: 485 EYCREK-LAHFKVPKTVEFV----ELPKTATGKIQKFVLRE 520
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 6e-42
Identities = 110/397 (27%), Positives = 176/397 (44%), Gaps = 56/397 (14%)
Query: 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIG 119
+ AP V + +TSGTT PKGV+ S+ L +S+ + +G + L PL H+G
Sbjct: 144 AAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVG 203
Query: 120 GLS-SAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWK 178
+A+L VG +F+ ++ L A+E+H +T P +++ + T+ +
Sbjct: 204 AFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRF-- 261
Query: 179 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 238
DS+ + GG P +++ T F +A+ I AYG+TET S T M G+
Sbjct: 262 DLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLME--------AGR 313
Query: 239 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYW 293
+ G+ G+ HVE+++ + G I RG V YW
Sbjct: 314 EIEKIGST-------------GRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYW 360
Query: 294 DQFLAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 349
K T E W +GD+G +D+ G ++L R+ I SGGEN+ EVE V+
Sbjct: 361 -----KDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVI 415
Query: 350 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHC 409
+ P + V+G+ + R E + A V L L+ E L +HC
Sbjct: 416 YELPEVAEAAVIGVHDDRWGERITAVVVLNPGAT----------------LTLEALDRHC 459
Query: 410 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446
R++ L FK PR + R P +GK+ + +R E
Sbjct: 460 RQR-LASFKVPRQLKV-RDELPRNPSGKVLKRVLRDE 494
|
Length = 497 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 2e-41
Identities = 115/401 (28%), Positives = 170/401 (42%), Gaps = 84/401 (20%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS-AMAML 128
I +TSGT PKG +++H ALI + ++ I DD+ LH PL H L L
Sbjct: 176 ILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYL 235
Query: 129 MVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIM------ADLATLIRVKKTWKGRD- 181
VGA +V + + + L +E +TS P + D T RD
Sbjct: 236 YVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDT----------RDL 285
Query: 182 -SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
S++K G +P E++KE P + + YG TE + P
Sbjct: 286 SSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIA-------------------P 326
Query: 241 QAFGNVTPNSVHQPQ------GVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVM 289
A +V P+ G G+P +VE +V D + V G I+ R +M
Sbjct: 327 LA-------TVLGPEEHLRRPGSA-GRPVLNVETRVVDDDGNDVAPGEVGEIVHRSPQLM 378
Query: 290 LRYWDQFLAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEV 345
L YWD P T E W +GD+G +D+ G + +V R+ IK+GGENV EV
Sbjct: 379 LGYWD----DPE-KTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREV 433
Query: 346 EAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVL 405
E L HP + + V+G+ + + E V A V + +E EL+
Sbjct: 434 EEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTE---------DELI------ 478
Query: 406 RQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446
HCR + L GFK P+ V++ P +GKI + E+R
Sbjct: 479 -AHCRAR-LAGFKVPK-RVIFVDELPRNPSGKILKRELRER 516
|
Length = 523 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 4e-40
Identities = 118/459 (25%), Positives = 180/459 (39%), Gaps = 112/459 (24%)
Query: 51 YSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG-YGEDDVY 109
S P+ I +TSGTTG+PKGV+++H L+ Q ++ G D
Sbjct: 177 DSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRV 236
Query: 110 LHTAPLCHIGGLSSAMAMLM-VGACHVFIPKFESKSALEAVEQHCVTSLITVP------- 161
L PL HI + + + G +F K + ++ LE +++ T +I VP
Sbjct: 237 LSFLPLAHIFERAFEGGLALYGGVTVLF--KEDPRTLLEDLKEVRPTVMIGVPRVWEKVY 294
Query: 162 -AIMA--DLATLIRVKKTW--------------------------------KGRD----S 182
IM A +R K K RD
Sbjct: 295 KGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGR 354
Query: 183 VKKILNGGGGLPSELMKEATNSFPKA---KLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
++ L+GG L EL+ F ++ ++ YG+TETS+ ++
Sbjct: 355 IRYALSGGAPLSPELLH-----FFRSLGIPILEGYGLTETSAVVSV-------------- 395
Query: 240 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 299
+V GKP P +E+K+ DG IL RG +VM Y+
Sbjct: 396 -NPPDRFVLGTV--------GKPLPGIEVKIADDG-----EILVRGPNVMKGYYK----N 437
Query: 300 PSVSTGEV-----WLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVYPEEVEAVLLQHP 353
P T E W TGD+G +D+ G + + GR+ IK S G+N+ PE +E+ L + P
Sbjct: 438 PEA-TAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSP 496
Query: 354 GIIGIVVVGIANARLTEMVVACV-RLRESWQWSES-NCDQSSKNKELLLSSEVLRQHCRE 411
I I VVG L ++V L + W+ES N S+ +EL ++L+
Sbjct: 497 LIEQICVVGDDKKFLVALIVPDFDALEK---WAESLNKVISASREELARDPKLLKLILPR 553
Query: 412 KNLTGFKAPRL-----FVLWRKPFP-----LTSTGKIRR 440
N + FVL K F LT T K++R
Sbjct: 554 VNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKR 592
|
Length = 613 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 5e-40
Identities = 98/391 (25%), Positives = 154/391 (39%), Gaps = 61/391 (15%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMA 126
A +I +TSG+TG PKGV++ H L+ G D L A +
Sbjct: 96 AYVI-YTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSFDASVWEIFP 154
Query: 127 MLMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 183
L+ GA V P + E + +H +T L VP+++ L + S+
Sbjct: 155 PLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDALE----PAALPSL 210
Query: 184 KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 243
+ ++ GG LP+EL++ FP A+L++AYG TET+ +T ++ +
Sbjct: 211 RLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETT---VDVTYHEVDPDDL------- 260
Query: 244 GNVTPNSVHQPQGVCVGKPAPHVELKV-------CSDGSSHVGRILTRGAHVMLRYWDQ- 295
V +G+P + + V G G + GA V Y ++
Sbjct: 261 ---------DGGSVPIGRPIANTRVYVLDEDLRPVPVGV--PGELYIGGAGVARGYLNRP 309
Query: 296 ------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 349
F+ P GE TGD+ GN+ +GR + ++K G + E+EA L
Sbjct: 310 ELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVKIRGYRIELGEIEAAL 369
Query: 350 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHC 409
L HPG+ VVV + + +VA V + L + LR
Sbjct: 370 LAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAE----------------LDAAELRAFL 413
Query: 410 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
E+ L + P FV PLT GK+ R
Sbjct: 414 AER-LPDYMVPSAFV-VLDALPLTPNGKVDR 442
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 4e-39
Identities = 107/400 (26%), Positives = 158/400 (39%), Gaps = 73/400 (18%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGY---GEDDVYLHTAPLCHIGGLSSAMA 126
I +TSG+TG PKGVV+SH L+ ++ Y DD L PL G +
Sbjct: 168 ILYTSGSTGRPKGVVLSHRNLV---AGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTT 224
Query: 127 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SVK 184
VGA V + L+A+E+H +T L VP + A LA L W S++
Sbjct: 225 AFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQL-----DWPESAAPSLR 279
Query: 185 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 244
+ N GG +P + + P A+L YG+TE S LP
Sbjct: 280 YLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTY--------------LPPEEV 325
Query: 245 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH-----VGRILTRGAHVMLRYWDQ---- 295
+ P+S+ GK P+ E+ V + S G ++ RGA V + YW+
Sbjct: 326 DRRPDSI--------GKAIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKT 377
Query: 296 ---------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE 346
F + + VW +GD D+ G ++ VGRR+ IK+ G V P EVE
Sbjct: 378 AERFRPLPPFPGELHLPELAVW--SGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVE 435
Query: 347 AVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 406
V + V G+ + L + +V V + L L
Sbjct: 436 EVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEE----------------LDRAALL 479
Query: 407 QHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446
CR L + P L + R+ P + GKI R + +E
Sbjct: 480 AECR-ARLPNYMVPAL-IHVRQALPRNANGKIDRKALAKE 517
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 8e-39
Identities = 101/390 (25%), Positives = 157/390 (40%), Gaps = 66/390 (16%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAK--IAIVGYGEDDVYLHTAPLCHIGGLSSAMAM 127
I FTSG+TG PKGV ISH+ L S + E DV+ + AP +
Sbjct: 102 ILFTSGSTGKPKGVQISHANLA--SFLDWMVEDFDLTEGDVFSNQAPFSFDLSVFDLFPA 159
Query: 128 LMVGACHVFIPKFESKSAL---EAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 182
L GA IPK + L E +++H +T ++VP+ + L + S
Sbjct: 160 LASGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVPSFASLLLLS----RELNPESLPS 215
Query: 183 VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 242
++ L G LP +L K FP A++I+ YG TE + ++T + L LP
Sbjct: 216 LRTFLFCGEVLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLP-- 273
Query: 243 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWD--- 294
+G P P + + + G ++ G V Y +
Sbjct: 274 ----------------IGYPKPGLRALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPE 317
Query: 295 ----QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 350
F G+ W TGD+ ++D G + +GR++ +IK G + EE+EA L
Sbjct: 318 KTAKAFFQDE----GQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALR 373
Query: 351 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCR 410
PG+ VV+ + +VA V KE L ++ L++ +
Sbjct: 374 ALPGVEEAVVLPVPKGEKVVRLVAFVVG-----------------KEGALDTKALKKELK 416
Query: 411 EKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
K L + PR FV + PL + GKI R
Sbjct: 417 -KRLPPYMIPRRFV-YLDSLPLNANGKIDR 444
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 8e-39
Identities = 109/366 (29%), Positives = 160/366 (43%), Gaps = 42/366 (11%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGY--GEDDVYLHTAPLCH-IGG 120
PE + +TSGTTG PKG VI A + L G G +V L PL H IG
Sbjct: 151 PEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGF 210
Query: 121 LSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
+ +A L + +V + +F+ AL+ +EQ VTSL P + LA +
Sbjct: 211 FAVLVAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDALAA--AAEGAPLKL 268
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
DS++ + G +P +++ P K ++ YG TE +SL +M DP T P
Sbjct: 269 DSLEHVTFAGATMPDAVLERVNQHLPGEK-VNIYGTTEAMNSL-YMR--DPRTGT-EMRP 323
Query: 241 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLA-K 299
F V + V +G +P L +G ++ Y +Q A
Sbjct: 324 GFFSEV--------RIVRIGG-SPDEALPNGEEGEL----VVAAADATFTGYLNQPQATA 370
Query: 300 PSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 359
+ G W T D+ +D G V ++GR + I SGGEN++P EVE VL + PG+ +V
Sbjct: 371 EKLQDG--WYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVV 428
Query: 360 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKA 419
V+G+ + R + V ACV RE LS++ L CR L FK
Sbjct: 429 VIGLPDERWGQSVTACVVPREGET----------------LSADALDTFCRASELADFKR 472
Query: 420 PRLFVL 425
PR +
Sbjct: 473 PRRYFF 478
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 1e-37
Identities = 99/381 (25%), Positives = 170/381 (44%), Gaps = 62/381 (16%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVG 131
FTSG+TG PK + + + + + +D L L H L A++ L VG
Sbjct: 150 FTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVG 209
Query: 132 ACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGG 191
+ KF L+ +E ++ + TVP + L +L + + ++ KI++ G
Sbjct: 210 QTVHLMRKFIPNQVLDKLETENISVMYTVPTM---LESLYKENRV---IENKMKIISSGA 263
Query: 192 GLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMT-LYDPTLETPGQLPQAFGNVTPNS 250
+E ++ N FP AKL YG +E L+F+T L D E PNS
Sbjct: 264 KWEAEAKEKIKNIFPYAKLYEFYGASE----LSFVTALVDEESERR-----------PNS 308
Query: 251 VHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAKPSVSTG 305
V G+P +V++++C++ V G + + + Y + ++
Sbjct: 309 V--------GRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNAD 360
Query: 306 EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 365
W+ D+G D+ G +++VGR I GG N++PEE+E+VL +HP + IVV+G+ +
Sbjct: 361 G-WMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPD 419
Query: 366 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR--LF 423
+ E VA + S+ ++ L+ C ++ L+ FK P+ F
Sbjct: 420 SYWGEKPVAII-------------KGSATKQQ-------LKSFCLQR-LSSFKIPKEWHF 458
Query: 424 VLWRKPFPLTSTGKIRRDEVR 444
V P T++GKI R E +
Sbjct: 459 V---DEIPYTNSGKIARMEAK 476
|
Length = 487 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 3e-37
Identities = 108/384 (28%), Positives = 168/384 (43%), Gaps = 53/384 (13%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAM-LMV 130
+TSGTTG PKGV+ + + L+ + +G G DDV L +P+ H G + M +M+
Sbjct: 204 YTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVML 263
Query: 131 GACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGG 190
GA V ++ A E + VT + + DL VK++ + S++ L G
Sbjct: 264 GATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRA--VKESGRPVSSLRTFLCAG 321
Query: 191 GGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNS 250
+P L++ A + AK++SA+GMTE + TL +
Sbjct: 322 APIPGALVERARAAL-GAKIVSAWGMTENGAV---------TLTKLDDPDERASTTD--- 368
Query: 251 VHQPQGVCVGKPAPHVELKVC-SDGSS----HVGRILTRGAHVMLRYWDQFLAKPSVST- 304
G P P VE++V +DG+ +GR+ RG Y L +P ++
Sbjct: 369 ---------GCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGY----LKRPQLNGT 415
Query: 305 -GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 363
+ W DTGD+ ID G + + GR I GGEN+ E+EA+L +HP I + +V
Sbjct: 416 DADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAY 475
Query: 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLF 423
+ RL E A V R E L + +V +Q+ E RL
Sbjct: 476 PDERLGERACAFVVPRPGQSLDFEEM------VEFLKAQKVAKQYIPE---------RLV 520
Query: 424 VLWRKPFPLTSTGKIRRDEVRREV 447
V R P T +GKI++ +R +
Sbjct: 521 V--RDALPRTPSGKIQKFRLREML 542
|
Length = 547 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 9e-37
Identities = 111/391 (28%), Positives = 170/391 (43%), Gaps = 49/391 (12%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG-LSSAMAML 128
+ FTSGT G PKGV+++H+ ++ A A + DV++ APL H G L A
Sbjct: 192 VLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPF 251
Query: 129 MVGACHVFIPKFESKSALEAVEQH-CVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 187
++GA V + F + L +EQ C L P I DL L+ + +++ L
Sbjct: 252 LIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIY-DLLNLLEKQPAD--LSALRFFL 308
Query: 188 NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 247
GG +P ++ +E KL+S YG TE SS + L DP F +
Sbjct: 309 CGGTTIPKKVARECQQR--GIKLLSVYGSTE-SSPHAVVNLDDPL--------SRFMHTD 357
Query: 248 PNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAKPSV 302
G A VE+KV + + G +RG +V + Y D+
Sbjct: 358 ------------GYAAAGVEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARA 405
Query: 303 STGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVG 362
E W +GD+ +D+ G + + GR+ I GGEN+ EVE +LLQHP I VV
Sbjct: 406 LDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVA 465
Query: 363 IANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRL 422
+ + RL E A V L+ L+ E + K + +K P
Sbjct: 466 MPDERLGERSCAYVVLKAP---------------HHSLTLEEVVAFFSRKRVAKYKYPEH 510
Query: 423 FVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 453
V+ K P T++GKI++ +R+++M L
Sbjct: 511 IVVIDK-LPRTASGKIQKFLLRKDIMRRLTQ 540
|
Length = 547 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 1e-36
Identities = 108/381 (28%), Positives = 162/381 (42%), Gaps = 59/381 (15%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIG-GLSSAMAML 128
I FTSGTT PKGVVI+H L +DDVYL P HI ++AMA
Sbjct: 178 ILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAF 237
Query: 129 MVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI-- 186
GA V + K+ +++ V ++ T +P ++ L +++ + ++++
Sbjct: 238 SAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTL--MVQPPSANDRQHCLREVMF 295
Query: 187 -LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 245
LN S+ K+A +L+++YGMTET + + PG
Sbjct: 296 YLN-----LSDQEKDAFEERFGVRLLTSYGMTETIVGIIG--------DRPGD------- 335
Query: 246 VTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH-----VGRILTRGA---HVMLRYWDQFL 297
P +G+P E ++ D + +G I +G + Y+
Sbjct: 336 ----KRRWPS---IGRPGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPK 388
Query: 298 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 357
A V + WL TGD G +D+ G + V RR IK GGENV E+E ++ HP I
Sbjct: 389 ATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQD 448
Query: 358 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF 417
IVVVGI ++ E + A V L E LS E C E+N+ F
Sbjct: 449 IVVVGIKDSIRDEAIKAFVVLNEGET----------------LSEEEFFAFC-EQNMAKF 491
Query: 418 KAPRLFVLWRKPFPLTSTGKI 438
K P ++ RK P +GKI
Sbjct: 492 KVP-SYLEIRKDLPRNCSGKI 511
|
Length = 517 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-36
Identities = 108/376 (28%), Positives = 179/376 (47%), Gaps = 49/376 (13%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIV---GYGEDDVYLHTAPLCHIGGLSSAMAM- 127
+T GTTG PKGV+++H L+ +L + + GE+ V L P H+ G+++ M +
Sbjct: 213 YTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEE-VVLGVLPFFHVYGMTAVMNLS 271
Query: 128 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 187
+M G V IPKF+ K EA+++H VT P I L +K+ S++ +
Sbjct: 272 IMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEY--DISSIRACI 329
Query: 188 NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 247
+G LP E+ +E + KL+ YG+TE+S L++ ++P + G
Sbjct: 330 SGSAPLPVEV-QEKFETVTGGKLVEGYGLTESSPVTHSNFLWEK------RVPGSIGVPW 382
Query: 248 PNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTG-- 305
P++ + G+ P E +G I+ +G +M YW+ KP +
Sbjct: 383 PDTEAMIMSLETGEALPPGE----------IGEIVVKGPQIMKGYWN----KPEETAAVL 428
Query: 306 -EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 364
+ WL TGD+G +D+ G ++ R+ I + G NVYP EVE VL +H + +V +G+
Sbjct: 429 QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVP 488
Query: 365 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV 424
+ E V A V L+E + SE +Q ++ K L +K P+++
Sbjct: 489 DPYRGETVKAFVVLKEGTECSEEELNQFAR-----------------KYLAAYKVPKVYE 531
Query: 425 LWRKPFPLTSTGKIRR 440
+R P T+ GKI R
Sbjct: 532 -FRDELPKTTVGKILR 546
|
Length = 563 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-36
Identities = 109/394 (27%), Positives = 167/394 (42%), Gaps = 63/394 (15%)
Query: 73 TSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG-LSSAMAMLMVG 131
T GTTG+PK SH + + + G G DV L+ PL H+GG + + +A L G
Sbjct: 10 TGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIVTGLAPLARG 69
Query: 132 ACHVFIPK---FESKSAL----EAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 182
A V +P F + + + + VE++ VT L VP ++A L + D S
Sbjct: 70 A-TVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLG-----DADISS 123
Query: 183 VKKILNGGGGLPSELMK--EATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
++ L G LP E+ + EA P ++ YGMTE + +P
Sbjct: 124 LRYALTGAAPLPVEVARRFEAVTGVP---VVEGYGMTEGTGVSAI----NP--------- 167
Query: 241 QAFGNVTPNSVHQP---QGVCVGKPAP-HVELKVCSDGSSHVGRILTRGAHVMLRYWDQF 296
G P SV V V K + C+ G VG + RG +V Y +
Sbjct: 168 -RGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGE--VGVLAIRGPNVFPGYLNDA 224
Query: 297 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 356
+ WL+TGD+G ID G +WL GR I GG N+ P+ +E LL+HP +
Sbjct: 225 HNA-GARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVA 283
Query: 357 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELL--LSSEVLRQHCREKNL 414
VG +A E+ VA V+L+ +E ELL + + + + K
Sbjct: 284 LAAAVGRPDAYAGELPVAYVQLKPGATVTEG---------ELLAFVKARIPERAAVPK-- 332
Query: 415 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448
++++ PLT+ GKI + +R +
Sbjct: 333 ------AIYII--DALPLTAVGKIFKPRLRCDAA 358
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-36
Identities = 109/399 (27%), Positives = 168/399 (42%), Gaps = 58/399 (14%)
Query: 58 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGY-GEDDVYLHTAPLC 116
T S PE +I FTSGT+G PKGV++S L Q+ ++G +L AP+
Sbjct: 128 DTPSIPPERVSLILFTSGTSGQPKGVMLSERNL-QQTAHNFGVLGRVDAHSSFLCDAPMF 186
Query: 117 HIGGL-SSAMAMLMVGACHVFIPKFESKSALEAVEQHC--VTSLITVPAIMADLATLIRV 173
HI GL +S +L VG + FE K L + +T VP + R
Sbjct: 187 HIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQ----AFRA 242
Query: 174 KKTWKGRD--SVKKILNGGGGLPSE-LMKEATNSFPKAKLISAYGMTETSSSLTFMTLYD 230
+ + + + GG +E ++ + P ++ +GM+E + M++ D
Sbjct: 243 QPGFDAAALRHLTALFTGGAPHAAEDILGWLDDGIP---MVDGFGMSEAGTVFG-MSV-D 297
Query: 231 PTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRG 285
+ + A G P P V+ +V D + G +L RG
Sbjct: 298 CDV-IRAKAGAA-----------------GIPTPTVQTRVVDDQGNDCPAGVPGELLLRG 339
Query: 286 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEV 345
++ YW + A TG+ W TGDI D G W+V R+ SGGENVYP E+
Sbjct: 340 PNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEI 399
Query: 346 EAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVL 405
EAVL HPGI VVG+A+A+ E+ + + L E +
Sbjct: 400 EAVLADHPGIRECAVVGMADAQWGEVGYLAIVPAD----------------GAPLDLERI 443
Query: 406 RQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
R H + L +K P+ L P T++GK+++ +R
Sbjct: 444 RSHLSTR-LAKYKVPKHLRL-VDALPRTASGKLQKARLR 480
|
Length = 488 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 4e-36
Identities = 108/397 (27%), Positives = 170/397 (42%), Gaps = 79/397 (19%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLM 129
+ +T GTTG PKGV+ +H ++ + ++A + D +L PL H GG + L+
Sbjct: 173 LAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLL 231
Query: 130 VGACHVFIPKFESKSALEAVEQHCVTSLITVP----AIM--ADLATLIRVKKTWKGRD-- 181
G + + KF+ L A+E+ +T+ VP A++ DL T RD
Sbjct: 232 RGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRT----------RDLS 281
Query: 182 SVKKILNGGGGL-PSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
S++ + G + P L EA F YG TE +T++ D + P +L
Sbjct: 282 SLETVYYGASPMSPVRL-AEAIERFGPI-FAQYYGQTEAPMVITYLRKRDHDPDDPKRL- 338
Query: 241 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQ 295
C G+P P + + + + VG I RG VM YW++
Sbjct: 339 ---------------TSC-GRPTPGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYWNR 382
Query: 296 FLAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 351
P T E WL TGD+ D+ G ++V R+ I +GG NV+P EVE VL +
Sbjct: 383 ----PEE-TAEAFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAE 437
Query: 352 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 411
HP + + V+G+ + + E V A V LR + + L+ H +E
Sbjct: 438 HPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAA----------------VDAAELQAHVKE 481
Query: 412 KNLTGFK----APRLFVLWRKPFPLTSTGKIRRDEVR 444
+ K AP+ V + PLT+ GK + +R
Sbjct: 482 R-----KGSVHAPKQ-VDFVDSLPLTALGKPDKKALR 512
|
Length = 524 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 9e-36
Identities = 86/311 (27%), Positives = 128/311 (41%), Gaps = 41/311 (13%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMA 126
A +I +TSG+TG PKGVV++H +L+ G DD L A L +
Sbjct: 123 AYVI-YTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFG 181
Query: 127 MLMVGACHVFIPKFESKSALE----AVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDS 182
L+ GA V P+ E + + +H VT L P+++A LA + S
Sbjct: 182 ALLAGATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLAAAL-----PPALAS 236
Query: 183 VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 242
++ ++ GG L L+ P A+LI+ YG TET+ T TL DP
Sbjct: 237 LRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTA-TLVDPDDAPRESP--- 292
Query: 243 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQ-- 295
V +G+P + L V D V G + G V Y ++
Sbjct: 293 --------------VPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPE 338
Query: 296 -----FLAKPSV-STGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 349
F+ P G TGD+ GN+ +GR + ++K G + E+EA L
Sbjct: 339 LTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAAL 398
Query: 350 LQHPGIIGIVV 360
L+HPG+ VV
Sbjct: 399 LRHPGVREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-35
Identities = 107/402 (26%), Positives = 166/402 (41%), Gaps = 67/402 (16%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGED------DVYLHTAPLC 116
+ I+ +TSGTTG PKG + H L L + V + DV+ A
Sbjct: 86 GSDDPAILIYTSGTTGPPKGALHGHRVL----LGHLPGVELYFELAPRPGDVFWTPADWA 141
Query: 117 HIGGLSSAMAMLMVGACHVF---IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRV 173
IGGL + + V + +F+ + A + ++ VT+ P L + RV
Sbjct: 142 WIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTA---LKMMRRV 198
Query: 174 KKTWKGRD-SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPT 232
D ++ + +GG L EL++ A + + YG TE + +
Sbjct: 199 GSERARYDLRLRAVASGGESLGEELLEWARDEL-GLTVNEFYGQTEANLVVG-------- 249
Query: 233 LETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAH 287
++ + +GKP P E+ V D V G I +
Sbjct: 250 --------------NCAALGPARPGSMGKPVPGHEVAVVDDAGRPVPPGEVGEIAVKRPD 295
Query: 288 --VMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEV 345
+ L YW+ A + G+ WL TGD+G D G +W GR + IKS G + P E+
Sbjct: 296 PVMFLGYWNNPEATAAKFAGD-WLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEI 354
Query: 346 EAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVL 405
E LL+HP ++ VVG+ + E+V A V L E + S+ EL + L
Sbjct: 355 EECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAEGVEPSD----------EL---ATEL 401
Query: 406 RQHCREKNLTGFKAPRL--FVLWRKPFPLTSTGKIRRDEVRR 445
++ + L + PR FV P+T+TGKIRR E+RR
Sbjct: 402 QELVKS-RLAAHEYPREIEFV---DELPMTTTGKIRRRELRR 439
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 3e-35
Identities = 96/401 (23%), Positives = 142/401 (35%), Gaps = 77/401 (19%)
Query: 69 IICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGED--DVYLHTA------------- 113
++ T GTTG PKGV+ + L GE D
Sbjct: 168 LLY-TGGTTGMPKGVMWRQEDIFRVLLGGRDFAT-GEPIEDEEELAKRAAAGPGMRRFPA 225
Query: 114 -PLCHIGGLSSAMAMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMAD-LAT 169
PL H G +A A L G V +P +F++ +E+ V + V MA L
Sbjct: 226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLD 285
Query: 170 LIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLY 229
+ + + S+ I +GG + + P L + G +ET +
Sbjct: 286 ALEARGPYDL-SSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTV-- 342
Query: 230 DPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVM 289
G + T V + GS +G I R H+
Sbjct: 343 -----AKGAVHTGGPRFTIGP-----RTVVLDE----DGNPVEPGSGEIGWI-ARRGHIP 387
Query: 290 LRYWDQFLAKPSVST-----GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEE 344
L Y+ + + T G + GD ++ G + L+GR + I +GGE V+PEE
Sbjct: 388 LGYYKD--PEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEE 445
Query: 345 VEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEV 404
VE L HP + +VVG+ + R + VVA V+LRE +
Sbjct: 446 VEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDL----------------AE 489
Query: 405 LRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445
LR HCR L G+K PR DEV+R
Sbjct: 490 LRAHCRSS-LAGYKVPRAIWF--------------VDEVQR 515
|
Length = 533 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 7e-35
Identities = 97/394 (24%), Positives = 159/394 (40%), Gaps = 55/394 (13%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLS 122
+ + + +TSGTTG PKG+V SH +V+ D + +++ I GL
Sbjct: 170 ADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLW 229
Query: 123 SAM-AMLMVGACHVFI---PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWK 178
++ + L GA V P + + EA+E++ VT T P + L L +
Sbjct: 230 YSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPY-- 287
Query: 179 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 238
S++ + + G L E + S ++ YG TET F+ P G
Sbjct: 288 DLSSLRVLGSAGEPLNPEAFEWF-YSALGVWILDIYGQTETGM--GFIAGRPPV--KNG- 341
Query: 239 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD----GSSHVGRILTRGAH--VMLRY 292
G P P ++ D VG ++ R + L Y
Sbjct: 342 -------------------SSGLPLPGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTY 382
Query: 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
W+ G + TGD D+ G WL GR + IK G+ + P E+E+VLL H
Sbjct: 383 WNDPERYKEAYFGRWYR-TGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAH 441
Query: 353 PGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK 412
P + VVG+ + ++V+A V L + +E L+ E +R+H +
Sbjct: 442 PAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNE-------------LAEE-IRRHVA-R 486
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446
N+ PR + + P T++GKI+R +R+
Sbjct: 487 NIGPHAIPRK-IRFVDELPKTASGKIQRRLLRKI 519
|
Length = 528 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 8e-35
Identities = 116/412 (28%), Positives = 168/412 (40%), Gaps = 85/412 (20%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMA 126
A+ + +TSGTTG+PKGVV H + +L+ I G + VYL T P+ H G
Sbjct: 184 AIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWT 243
Query: 127 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWK-GRDSVKK 185
+ +V + K + K + + +H VT P +++ LI W+ G D
Sbjct: 244 VAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLS---ALINAPAEWRAGIDHPVH 300
Query: 186 ILNGGGGLPS---ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPT---LETPG-- 237
+ G P+ M+E F L YG+TET Y P P
Sbjct: 301 AMVAGAAPPAAVIAKMEEI--GF---DLTHVYGLTET---------YGPATVCAWQPEWD 346
Query: 238 QLP---QAFGNVTPNSVHQPQGVC-------------VGKPAPHVELKVCSDGSSHVGRI 281
LP +A + QGV +P P DG + +G I
Sbjct: 347 ALPLDERA-------QLKARQGVRYPLQEGVTVLDPDTMQPVPA-------DGET-IGEI 391
Query: 282 LTRGAHVMLRYWDQFLAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGG 337
+ RG VM Y L P +T E W TGD+ + G + + R I SGG
Sbjct: 392 MFRGNIVMKGY----LKNPK-ATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGG 446
Query: 338 ENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKE 397
EN+ EVE VL +HP ++ VV + + E+ A V L++ +E
Sbjct: 447 ENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATE----------- 495
Query: 398 LLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449
E + HCRE +L GFK P+ V P TSTGKI++ +R + S
Sbjct: 496 -----EEIIAHCRE-HLAGFKVPKAVVF--GELPKTSTGKIQKFVLREQAKS 539
|
Length = 545 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 9e-35
Identities = 101/380 (26%), Positives = 148/380 (38%), Gaps = 64/380 (16%)
Query: 70 ICFTSGTTGSPKGVVISH---------------SALIVQSLAKIAIVGYGEDDVYLHTAP 114
+ +T GTTG PKGV+ ++ LAK G G +L P
Sbjct: 8 MLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAG-GAGTRFLPACP 66
Query: 115 LCHIGGLSSAMAMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIR 172
L H G A++ L G V +P KF+ VE+H V +L+ V A L+
Sbjct: 67 LMHGAGQWLALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFA--RPLLE 124
Query: 173 VKKTWKGRD--SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYD 230
+ D S++ I + G E+ + P L+ A G +ET + ++
Sbjct: 125 ALEAAGRYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAG 184
Query: 231 PTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVML 290
T G P V + + GS VG I G V L
Sbjct: 185 GASAT--------GKFELG----PDTVVL-----DEDGSEVPPGSGEVGWIARGG-RVPL 226
Query: 291 RYWDQFLAKPSVST-----GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEV 345
Y+ + + T G + GD ++ G + L+GR + I +GGE V+PEEV
Sbjct: 227 GYYKD--PEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVFPEEV 284
Query: 346 EAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVL 405
E L HP + +VVG+ + R + VVA V+LR L L
Sbjct: 285 EEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAG----------------LDLAEL 328
Query: 406 RQHCREKNLTGFKAPRLFVL 425
R HCR+ L G+K PR V+
Sbjct: 329 RDHCRQH-LAGYKLPRAIVV 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-34
Identities = 109/398 (27%), Positives = 179/398 (44%), Gaps = 56/398 (14%)
Query: 70 ICFTSGTTGSPKGVVISHSALI--VQSLAKIAIVGY---GEDDVYLHTAPLCHIGGLS-S 123
I ++SGTTG+ KGVV++H LI V+ + Y G D+VYL P+ HI GLS
Sbjct: 203 IMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLF 262
Query: 124 AMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR--D 181
+ +L +G+ V + +F++ ++ +++ VT VP I+ L + K G
Sbjct: 263 VVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILM---ALTKKAKGVCGEVLK 319
Query: 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 241
S+K++ G L + +++ + P I YGMTE++
Sbjct: 320 SLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTEST--------------------- 358
Query: 242 AFGNVTPNSVHQPQGVCVGKPAPHVELKVC--SDGS----SHVGRILTRGAHVMLRYWDQ 295
A G N+ + VG AP+++ KV S G + G + +G VM Y +
Sbjct: 359 AVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNN 418
Query: 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 355
A S + WL TGDI D+ G +++V R IK G + P ++EAVL+ HP I
Sbjct: 419 PKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEI 478
Query: 356 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 415
I V + + E+ VA V + + LS E + + K +
Sbjct: 479 IDAAVTAVPDKECGEIPVAFV----------------VRRQGSTLSQEAVINYV-AKQVA 521
Query: 416 GFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 453
+K R V++ + P + GKI R E++R + + + S
Sbjct: 522 PYKKVRK-VVFVQSIPKSPAGKILRRELKRSLTNSVSS 558
|
Length = 560 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 3e-34
Identities = 115/401 (28%), Positives = 183/401 (45%), Gaps = 88/401 (21%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAI-VGYGEDDVYLHTAPLCHIGGLSSAMAM-LM 129
+T GTTG PKG + ++ + A A+ V GED V+L P I G + + L
Sbjct: 216 YTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLF 275
Query: 130 VGACHVFIPKFESKSALEAVEQHCVTSLITV----------PAIMA-DLATLIRVKKTWK 178
GA V + ++++ + + AVE++ VT + + P DL++L +V+
Sbjct: 276 SGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVV-- 333
Query: 179 GRDSVKKI----------LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTL 228
VKK+ L G ++ EA A+GMTET + TF
Sbjct: 334 --SFVKKLNPDYRQRWRALTGS------VLAEA-----------AWGMTETHTCDTF--- 371
Query: 229 YDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV------GRIL 282
T G F + + QP V VG P P E K+C + + G I+
Sbjct: 372 ------TAGFQDDDF-----DLLSQP--VFVGLPVPGTEFKICDFETGELLPLGAEGEIV 418
Query: 283 TRGAHVMLRYWDQFLA-KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVY 341
R ++ YW++ A ++ G WL TGDIG ID+ G + +GRR +K G +V+
Sbjct: 419 VRTPSLLKGYWNKPEATAEALRDG--WLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVF 476
Query: 342 PEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLS 401
P EVEA+L QHP ++G VVG + ++ VA V+L+ L+
Sbjct: 477 PSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKP----------------GADLT 520
Query: 402 SEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDE 442
+ L+ CRE N+ +K P + ++ P+T+TGK+R+ +
Sbjct: 521 AAALQAWCRE-NMAVYKVPEIRIV--DALPMTATGKVRKQD 558
|
Length = 567 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 8e-34
Identities = 108/342 (31%), Positives = 157/342 (45%), Gaps = 45/342 (13%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAK-----IAIVGYGEDDVYLHTAPLCH 117
+P+ V + ++SGTTG PKGV+++H L V S+A+ + + DDV L P+ H
Sbjct: 177 SPDDVVALPYSSGTTGLPKGVMLTHKGL-VTSVAQQVDGENPNLYFHSDDVILCVLPMFH 235
Query: 118 IGGLSSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT 176
I L+S + L VGA + +PKFE + LE +++H VT VP I+ +A V+K
Sbjct: 236 IYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEK- 294
Query: 177 WKGRD--SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET----SSSLTFMTLYD 230
D S++ +L+G L EL P A L YGMTE + L F +
Sbjct: 295 ---YDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAK--E 349
Query: 231 PTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKV------CSDGSSHVGRILTR 284
P G + G V N+ ELK+ S + G I R
Sbjct: 350 PFPVKSG----SCGTVVRNA----------------ELKIVDPETGASLPRNQPGEICIR 389
Query: 285 GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEE 344
G +M Y + A + + WL TGDIG IDD +++V R IK G V P E
Sbjct: 390 GPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAE 449
Query: 345 VEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSE 386
+EA+L+ HP I VV + + E+ VA V + +E
Sbjct: 450 LEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITE 491
|
Length = 537 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 2e-33
Identities = 120/454 (26%), Positives = 190/454 (41%), Gaps = 76/454 (16%)
Query: 9 DSWYLELQHTAIPSL-RWHVSLGSSSSDFVNKRDMLT-ADILKGYSLRSLPFTHSWAPEG 66
D + +L P L R G+ D + T D++ G S LP G
Sbjct: 153 DDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAPLP---KPPKPG 209
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKI-AIVGYGEDDVYLHTAPLCHIGGLSSAM 125
++I TSGTTG+PKG + LA + + V + + L AP+ H G +
Sbjct: 210 GIVI-LTSGTTGTPKGAPRPE-PSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLT 267
Query: 126 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRV-KKTWKGRD--S 182
+ +G+ V +F+ ++ LE + +H T+L+ VP +M L+ ++ + + D S
Sbjct: 268 LAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVP-VM--LSRILDLGPEVLAKYDTSS 324
Query: 183 VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 242
+K I G L EL A +F L + YG TE + + T+ TP L +A
Sbjct: 325 LKIIFVSGSALSPELATRALEAFGPV-LYNLYGSTEVAFA---------TIATPEDLAEA 374
Query: 243 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQFL 297
G VG+P V +K+ + VGRI Y D
Sbjct: 375 PG-------------TVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTDG-- 419
Query: 298 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 357
+ G L +GD+G D+ G +++ GR + I SGGENV+P EVE +L HP ++
Sbjct: 420 RDKQIIDG--LLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVE 477
Query: 358 IVVVGIAN----ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKN 413
V+G+ + RL VV K L + ++ + R+ N
Sbjct: 478 AAVIGVDDEEFGQRLRAFVV--------------------KAPGAALDEDAIKDYVRD-N 516
Query: 414 LTGFKAPR--LFVLWRKPFPLTSTGKIRRDEVRR 445
L +K PR +F+ P TGK+ + E+R
Sbjct: 517 LARYKVPRDVVFL---DELPRNPTGKVLKRELRE 547
|
Length = 549 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-32
Identities = 102/402 (25%), Positives = 172/402 (42%), Gaps = 66/402 (16%)
Query: 54 RSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTA 113
P H+ P+ ++ +TSGTTG PKG + +H ++ ++ + + V L
Sbjct: 179 GLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVL 238
Query: 114 PLCHIGGLSSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIR 172
PL H+ G+ +M A + GA V +P+++ ++A +E++ VT +P ++ D
Sbjct: 239 PLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG 298
Query: 173 VKKTWKGRD--SVKKILNGGGGLP---SELMKEATNSFPKAKLISAYGMTETSSSLTFMT 227
+ + RD S++ I GG +P +E +KE T + YG+TET +
Sbjct: 299 LAE----RDLSSLRYIGGGGAAMPEAVAERLKELTG----LDYVEGYGLTETMA------ 344
Query: 228 LYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVE--------LKVCSDGSSHVG 279
T P +P+ C+G P V+ L+ G VG
Sbjct: 345 ---QTHSNP--------------PDRPKLQCLGIPTFGVDARVIDPETLEELPPGE--VG 385
Query: 280 RILTRGAHVMLRYWDQFLAKPSVST---GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSG 336
I+ G V YW++ A G+ + TGD+G +D+ G ++ R I +
Sbjct: 386 EIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINAS 445
Query: 337 GENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNK 396
G V+P EVE +L +HP I V+ + R E V A V LR +
Sbjct: 446 GFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGK----------- 494
Query: 397 ELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI 438
+ E + RE ++ +K PR+ V + P + +GKI
Sbjct: 495 ---TTEEEIIAWARE-HMAAYKYPRI-VEFVDSLPKSGSGKI 531
|
Length = 546 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 4e-32
Identities = 104/390 (26%), Positives = 160/390 (41%), Gaps = 53/390 (13%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG-L 121
+P+ + +TSGTTG PKGV+ + + L + G DV L +P+ H G +
Sbjct: 193 SPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFM 252
Query: 122 SSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 181
M L++ A V + A E + + VT + + DL VK++
Sbjct: 253 YGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRA--VKESGAPVP 310
Query: 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 241
S+ L G +P L++ A A ++SA+GMTE + T D LE
Sbjct: 311 SLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMTENGAVTV--TEPDDALEK------ 361
Query: 242 AFGNVTPNSVHQPQGVCVGKPAPHVELKVC-SDGSS----HVGRILTRGAHVMLRYWDQF 296
G+P P VE+KV ++G+ GR+L RG Y
Sbjct: 362 -------------ASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGCSNFGGY---- 404
Query: 297 LAKPSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 354
L +P +++ E W DTGD+ D G + + GR I GGEN+ E+E +L QHP
Sbjct: 405 LKRPHLNSTDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPA 464
Query: 355 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 414
+ + +V + RL E A V + + L + +V Q+ E
Sbjct: 465 VAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAM------VAFLKAQKVALQYIPE--- 515
Query: 415 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
RL V P T GKI++ +R
Sbjct: 516 ------RLEV--VDALPATPAGKIQKFRLR 537
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 6e-32
Identities = 110/456 (24%), Positives = 171/456 (37%), Gaps = 113/456 (24%)
Query: 52 SLRSLPFTHSW---APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDV 108
LRS P P+ ++ TSG+TG PK VV++H ++ +S + + G+ DDV
Sbjct: 151 ELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDV 210
Query: 109 YLHTAPLCHIGGLSSAMAMLM---VGACHVFIPKFESKSALEAVEQHCVTSLITV-PAIM 164
L+ PL H+GG+ M L +G + H T I P
Sbjct: 211 SLNWMPLDHVGGIV--MLHLRDVYLGCQQI----------------HVPTDYILADPLRW 252
Query: 165 ADLATLIRVKKTW----------------KGRD----SVKKILNGGG------------- 191
DL RV TW + R S++ I+N G
Sbjct: 253 LDLIDRYRVTITWAPNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLEL 312
Query: 192 ----GLPSELMKEATNSFPKAKLISAYGMTETSSSLTF-MTLYDPTLETPGQLPQAFGNV 246
GLP++ ++ A+GM+ET S +T+ + G +
Sbjct: 313 LAPYGLPADAIR------------PAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPL 360
Query: 247 TPNSVHQPQG---VCVGKPAPHVELKVCSDGSS-----HVGRILTRGAHVMLRYWDQFLA 298
+ P+ V +G+P P V +++ + + VGR+ RG V Y+ A
Sbjct: 361 RFAAADHPEAVTFVELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEA 420
Query: 299 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 358
T + W TGD+G + D G + + GR I G N Y E+EA + Q PG+
Sbjct: 421 NAEAFTEDGWFRTGDLGFLHD-GRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGV--- 476
Query: 359 VVVGIANARLTEMVVAC-VRLRESWQWSESNCDQ--------SSKNKELLLSSEVLRQHC 409
AC VR + S D+ + L +R H
Sbjct: 477 ---------EPSFTAACAVRD------AGSGTDELAVFFVPRYDLDDRLAALLRAIRTHV 521
Query: 410 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445
K G + L ++ FP TS GKI+R ++R+
Sbjct: 522 ARK--IGIAPAYVIPLAKEDFPKTSLGKIQRAQLRK 555
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 9e-32
Identities = 101/335 (30%), Positives = 151/335 (45%), Gaps = 71/335 (21%)
Query: 50 GYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSAL--IVQSLAK-IAIVGYGED 106
Y P G I +TSG+TG PKGV +S +AL + QSLA+ IAI+ E
Sbjct: 97 LYIALRPSANPVELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAIL---EP 153
Query: 107 DVYLHTAPLC----HIGGLSSAMAMLMVGACHVFIP----------KFESKSALEAVEQH 152
+ +L PL +I G+ A L++GA + +P + + A+ +
Sbjct: 154 ERHLCLLPLATLLENIAGV---YAPLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRW 210
Query: 153 CVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKL-- 210
SLI VP ++ L V++ +S++ + GG + L++ A L
Sbjct: 211 QPHSLILVPQLLMALVAA--VEQGPLPPESLRFVAVGGARVSPSLLQRA------RALGL 262
Query: 211 --ISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVEL 268
YG++E +S + +L TPG P S VGKP PHV++
Sbjct: 263 PVYEGYGLSECASVV--------SLNTPGADR-------PGS--------VGKPLPHVQV 299
Query: 269 KVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGR 328
+ +D G IL RG+ +ML Y + A W TGD+G +D+ G +++ GR
Sbjct: 300 SIAND-----GEILVRGS-LMLGYLGEPPATDD------WWATGDLGHLDEEGYLYINGR 347
Query: 329 R-NGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVG 362
+ N I S G NV PE VE+ L Q P I VV G
Sbjct: 348 KKNLIITSFGRNVSPEWVESELQQAPAIAQAVVFG 382
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-31
Identities = 111/407 (27%), Positives = 181/407 (44%), Gaps = 87/407 (21%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSL-AKIA---IVGYGEDDVYLHTA-PLCHIGGLS-SAM 125
+T GTTG KG +++H ++ AK A ++ G++ V TA PL HI L+ + +
Sbjct: 213 YTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVV--TALPLYHIFALTVNCL 270
Query: 126 AMLMVGACHVFI------PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKG 179
+ +G ++ I P F ++ ++++ T++ V + L + ++
Sbjct: 271 LFIELGGQNLLITNPRDIPGF-----VKELKKYPFTAITGVNTLFNALLN----NEEFQE 321
Query: 180 RDSVKKILNGGGGLP-----SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLE 234
D L+ GGG+ +E + T L+ YG+TE S ++
Sbjct: 322 LDFSSLKLSVGGGMAVQQAVAERWVKLT----GQYLLEGYGLTECSPLVS---------- 367
Query: 235 TPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVM 289
V P + G +G P P E+K+ D + V G + +G VM
Sbjct: 368 -----------VNPYDLDYYSG-SIGLPVPSTEIKLVDDDGNEVPPGEPGELWVKGPQVM 415
Query: 290 LRYWDQFLAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEV 345
L YW + P +T EV WL TGDI +D+ G + +V R+ I G NVYP E+
Sbjct: 416 LGYWQR----PE-ATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEI 470
Query: 346 EAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVL 405
E V++ HP ++ + VG+ + E V V + D S L+ E L
Sbjct: 471 EDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKK----------DPS-------LTEEEL 513
Query: 406 RQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452
HCR +LTG+K P+L V +R P ++ GKI R E+R E + +
Sbjct: 514 ITHCRR-HLTGYKVPKL-VEFRDELPKSNVGKILRRELRDEARAKVD 558
|
Length = 560 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 3e-31
Identities = 85/340 (25%), Positives = 148/340 (43%), Gaps = 45/340 (13%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
A + A I+ FTSG+TG PKGVV +H Q A ++ G E D L P + G +
Sbjct: 84 ADDPAAIL-FTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLAAFPPFALFGPA 142
Query: 123 SAMAMLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 181
+ ++ A P + +A+ + + + PA+ L V + +
Sbjct: 143 LGVTT-VIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPAL------LKNVARYCEENG 195
Query: 182 ----SVKKILNGGGGLPSELMKEATNSF-PKAKLISAYGMTETSSSLTFMTLYDPTLETP 236
S++++L+ G +P +L++ + P+A++ + YG TE + + + + +
Sbjct: 196 IQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATE-ALPVASIEGRE--VLAE 252
Query: 237 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKV--CSDGSSH------------VGRIL 282
P G GVCVG P P +++++ DG VG I+
Sbjct: 253 SAEPPEAGA----------GVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEII 302
Query: 283 TRGAHVMLRYWDQFLA--KPSVSTGE-VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGEN 339
G HV Y+++ A +S G +W GD+G DD G +W GR+ R+++ G
Sbjct: 303 VSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGT 362
Query: 340 VYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLR 379
++ VE V +HPG+ +VG+ T+ V V
Sbjct: 363 LFTVPVEQVFNRHPGVRRSALVGVGKP-GTQAPVLVVEPM 401
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 3e-31
Identities = 110/387 (28%), Positives = 164/387 (42%), Gaps = 53/387 (13%)
Query: 72 FTSGTTGSPKGVVISHSAL---IVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAML 128
FTSGTTG PK V++H + I LA + + G E D L APL H G+ + +
Sbjct: 170 FTSGTTGRPKAAVLTHGQMAFVITNHLADL-MPGTTEQDASLVVAPLSHGAGI-HQLCQV 227
Query: 129 MVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 186
GA V +P +F+ VE+H VT+L TVP I+ L V + S++ +
Sbjct: 228 ARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDR--YDHSSLRYV 285
Query: 187 LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 246
+ G + K A K L+ +G+ E + ++T + P L P A +
Sbjct: 286 IYAGAPMYRADQKRALAKLGK-VLVQYFGLGEVTGNITVLP---PALHDAEDGPDA--RI 339
Query: 247 TPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQFLAKPS 301
G C G +E+++ D G I G V Y++ A
Sbjct: 340 ---------GTC-GFERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAK 389
Query: 302 VSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361
W TGD+G +D G +++ GR + SGG NVYP E+E LL HP + + V+
Sbjct: 390 AFRDG-WFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVL 448
Query: 362 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELL--LSSEVLRQHCREKNLTGFKA 419
G+ + E+ VA R+ E+ ELL L +V R +K
Sbjct: 449 GVPDPVWGEVGVAVCVARDGAPVDEA---------ELLAWLDGKVAR----------YKL 489
Query: 420 PRLFVLWRKPFPLTSTGKIRRDEVRRE 446
P+ F W P + GKI + VR E
Sbjct: 490 PKRFFFW-DALPKSGYGKITKKMVREE 515
|
Length = 528 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 3e-31
Identities = 102/465 (21%), Positives = 158/465 (33%), Gaps = 130/465 (27%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALI--VQSLAKIAIVGYGEDDVYLHTAPLCHIGGL 121
PE I +TSGTTG+PKGV+++H ++ V + KI G DVY+ PL HI
Sbjct: 110 PEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTDVYISYLPLAHIFER 169
Query: 122 SSAMAMLMVGA---------------CHVFIPKFESKSALEAVEQHCVTSLITVPA---- 162
L +G P T + VP
Sbjct: 170 VVENVCLYIGGRIGYYSGDTRGLKGDIKELKP----------------TVFVGVPRVLDR 213
Query: 163 ----IMADLATLIRVKKT-----------------------------WKGRDS----VKK 185
I+A + +K+T K + + V+
Sbjct: 214 IYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKLVFKKIKAALGGRVRL 273
Query: 186 ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 245
+L+GG L + E ++ YG+TET + T D T
Sbjct: 274 MLSGGAPLSPDTQ-EFLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGH---------- 322
Query: 246 VTPNSVHQPQGVCVGKPAPHVELKVCS--------DGSSHVGRILTRGAHVMLRYWDQFL 297
VG P P E+K+ G I RG +V Y+
Sbjct: 323 -------------VGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPE 369
Query: 298 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVYPEEVEAVLLQHPGII 356
+ W TGDIG G + ++ R+ K S GE V E++E + P +
Sbjct: 370 KTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVD 429
Query: 357 GIVVVGIANARLTEMVVACV-----RLRESWQWSESNCDQSSKNKELLLSSEV------- 404
I V G + +VA V L +W+ N +EL + ++
Sbjct: 430 QICVYGDSLKS---FLVAIVVPDEDVLE---KWAAENGGGGGDFEELCNNKKLKKAILKD 483
Query: 405 LRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVR 444
L + +E L GF+ + L +PF LT T K++R +++
Sbjct: 484 LNEIGKENGLKGFEIVKAIHLTPEPFTPENGLLTPTFKLKRPQLK 528
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 3e-31
Identities = 101/396 (25%), Positives = 158/396 (39%), Gaps = 64/396 (16%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALI--VQSLAKIAIVGYGEDDVYLHTAPLCHIGGL 121
+ +TSGTTG PKGV+ H + ++ A+ ++G D ++ L GL
Sbjct: 90 ADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFAR-ELLGLQPGDRIFSSSKLFFAYGL 148
Query: 122 -SSAMAMLMVGACHVFIPKFESKSA-LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKG 179
+S + L GA V +P + + A L+ + +H T L VPA+ L ++
Sbjct: 149 GNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRAL-----LESGAGS 203
Query: 180 RD---SVKKILNGGGGLPS---ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTL 233
SV+ ++ G LP+ E EAT +++ G TE
Sbjct: 204 APLFRSVRLCVSAGEALPAGLAERWAEATG----IEILDGIGSTEVL------------- 246
Query: 234 ETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHV 288
F + P + G G+P P E ++ + + VG + RG +
Sbjct: 247 -------HIFISNRPGAARP--GTT-GRPVPGYEARLVDESGREVPAGTVGDLWVRGPSL 296
Query: 289 MLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV 348
YW+ K + + WL TGD S D G GR + IK G+ V P EVEA
Sbjct: 297 APGYWNL-PEKTQRTLRDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAA 355
Query: 349 LLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQH 408
L +HP + VV + + + A V R ++LL L +
Sbjct: 356 LGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRP-----------GEAIQQLL--ERDLHRF 402
Query: 409 CREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
RE+ L +K PR P T+TGK++R +R
Sbjct: 403 LRER-LAPYKCPRQIEF-LDTLPRTATGKLQRFRLR 436
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-30
Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 50/381 (13%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIA-IVGYGEDDVYLHTAPLCHIGGLSSAMAMLM- 129
++SG+TG PKGVV H ++V + A ++G EDDV A L GL + + +
Sbjct: 168 YSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFPLS 227
Query: 130 VGACHVFIPKF-ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILN 188
VGA V +P+ + +E++ T VP + A A L +K + S++ ++
Sbjct: 228 VGATTVLMPERPTPDAVFATIERYKPTVFFGVPTLYA--AMLAAPEKPERDLSSLRLCVS 285
Query: 189 GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 248
G LP+E+ F +++ G TE + ++ L G V
Sbjct: 286 AGEALPAEIGYRWKELF-GLEILDGIGSTE------MLHIF---------LSNRPGAVKY 329
Query: 249 NSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAKPSVS 303
+ GKP P E+K+ + V G + RG YW++
Sbjct: 330 GTS--------GKPVPGYEVKLVDEDGEEVADGEIGELWVRGDSSAAGYWNRREKTRETF 381
Query: 304 TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 363
GE W TGD D+ G W GR + +K G V P EVE LLQHP ++ VVG
Sbjct: 382 VGE-WTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGA 440
Query: 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLF 423
+ A V L++ +Q S L+ ++K L +K PR
Sbjct: 441 EDEDGLTKPKAFVVLKDGYQPSP-------------ELETELKDFVKDK-LAPYKYPRWI 486
Query: 424 VLWRKPFPLTSTGKIRRDEVR 444
+ P T+TGKI+R ++R
Sbjct: 487 EFVDE-LPKTATGKIQRFKLR 506
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-30
Identities = 102/398 (25%), Positives = 163/398 (40%), Gaps = 65/398 (16%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS 123
+ ++ FTSGTTG PK V+ +HS + + + DD++ A G S
Sbjct: 80 ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWS 139
Query: 124 A-MAMLMVGACHVF--IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
+ A ++GA +F+++ LE +E++ VT+ P L++ +
Sbjct: 140 SLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTA---YRMLLQQDLSSYDF 196
Query: 181 DSVKKILNGGGGLPSELM---KEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 237
++ +++ G L E++ + AT + YG TET L PG
Sbjct: 197 SHLRHVVSAGEPLNPEVIDWWRAAT----GLPIRDGYGQTETG--LLVAN-------FPG 243
Query: 238 QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRI-LTRGAH---V 288
+ P S+ G+PAP + + D G I + +
Sbjct: 244 MEVK------PGSM--------GRPAPGYRVAIIDDEGNELPPGEEGDIAVRVKPRPPGL 289
Query: 289 MLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV 348
Y + G+ W TGD D+ G W VGR + IKS G + P EVE+
Sbjct: 290 FRGYLKDPEKTEATIRGD-WYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESA 348
Query: 349 LLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQH 408
L++HP + VVG + E+V A V L +Q SE L+ E L++H
Sbjct: 349 LIEHPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQPSEE------------LAKE-LQEH 395
Query: 409 CREKNLTGFKAPRL--FVLWRKPFPLTSTGKIRRDEVR 444
+++ +K PR FV P T +GKIRR E+R
Sbjct: 396 VKKR-TAPYKYPREIEFVE---ELPKTVSGKIRRVELR 429
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 3e-30
Identities = 117/433 (27%), Positives = 164/433 (37%), Gaps = 105/433 (24%)
Query: 49 KGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG-YGED- 106
+G SL+ +P + ++ +T GTTG KG +++H L+ L A + G D
Sbjct: 195 RGLSLKPVPVGL----DDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDG 250
Query: 107 --------DVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLI 158
+V + PL HI ++ +MV H LI
Sbjct: 251 QPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNH--------------------NVLI 290
Query: 159 TVPAIMADLATLIRVKKTWK-----GRD-----------------SVKKILNGGGGLPSE 196
T P D+ I+ W+ G + S K+ N GG +
Sbjct: 291 TNPR---DIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVK 347
Query: 197 LMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQG 256
E ++ YG+TETS P A N P G
Sbjct: 348 ATAERWEQLTGCTIVEGYGLTETS-------------------PVASTN--PYGELARLG 386
Query: 257 VCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDT 311
VG P P LKV D + + G + +G VM YW Q A E W T
Sbjct: 387 T-VGIPVPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKT 445
Query: 312 GDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEM 371
GDI ID G V +V R+ I G NVYP E+E V++ HP + +G+ + R E
Sbjct: 446 GDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEA 505
Query: 372 VVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP 431
V V R+ LS E L+ +C+E N TG+K P+ VL R P
Sbjct: 506 VKLFVVARDPG-----------------LSVEELKAYCKE-NFTGYKVPKHIVL-RDSLP 546
Query: 432 LTSTGKIRRDEVR 444
+T GKI R E+R
Sbjct: 547 MTPVGKILRRELR 559
|
Length = 562 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 4e-30
Identities = 104/423 (24%), Positives = 164/423 (38%), Gaps = 82/423 (19%)
Query: 63 APEGAVIICF--TSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG 120
+ + T GTTG PK +H + + ++G G D PL H+
Sbjct: 209 PIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNA 268
Query: 121 L-SSAMAMLMVGACHVFIPK---FESKSAL----EAVEQHCVTSLITVPAIMADLATLIR 172
L + +A L GA HV + + + + VE++ + L VP + A L +
Sbjct: 269 LLVTGLAPLARGA-HVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV 327
Query: 173 VKKTWKGRD--SVKKILNGGGGLPSEL---MKEATNSFPKAKLISAYGMTETSSSLTFMT 227
G D S++ L G LP E+ + AT +++ YG+TE +
Sbjct: 328 -----DGHDISSLRYALCGAAPLPVEVFRRFEAAT----GVRIVEGYGLTEATCV----- 373
Query: 228 LYDPTLETPGQLPQAFGNVTPNSVHQPQGV-CVGKPAPHVELKVC-SDGSSH-------- 277
+ N + + VG P+ ++V D +
Sbjct: 374 ------------------SSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVD 415
Query: 278 -VGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSG 336
VG + G +V Y + K + + WL+TGD+G ID G WL GR I G
Sbjct: 416 EVGVLCIAGPNVFSGYLEAAHNK-GLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRG 474
Query: 337 GENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNK 396
G N+ P +E LL+HP + VG +A E+ VA V+L+ +E+
Sbjct: 475 GHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEA--------- 525
Query: 397 ELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI-----RRDEVRREVMSHL 451
ELL R H E+ P+ + P T+ GKI RRD +RR + + L
Sbjct: 526 ELL---AFARDHIAERA----AVPKHVRIL-DALPKTAVGKIFKPALRRDAIRRVLRAAL 577
Query: 452 KSL 454
+
Sbjct: 578 RDA 580
|
Length = 632 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 1e-29
Identities = 107/400 (26%), Positives = 176/400 (44%), Gaps = 68/400 (17%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIV---QSLAKIAIVGYGED--DVYLHTAPLCH 117
P+ + +T GTTG KG +++H L+ Q+ +A G E+ +V + PL H
Sbjct: 206 EPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYH 265
Query: 118 IGGLSSAMAMLM-VGACHVFI--PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVK 174
I L++ + M +G C+ I P+ + ++ +++ T+ V + L
Sbjct: 266 IFALTANGLVFMKIGGCNHLISNPR-DMPGFVKELKKTRFTAFTGVNTLFNGLLNT---- 320
Query: 175 KTWKGRDSVK----KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYD 230
G D + K+ GGG + E L+ AYG+TETS +
Sbjct: 321 ---PGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACI----- 372
Query: 231 PTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-----HVGRILTRG 285
P L + G++ G P P + + D + +G + +G
Sbjct: 373 ----NPLTLKEYNGSI-------------GLPIPSTDACIKDDAGTVLAIGEIGELCIKG 415
Query: 286 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEV 345
VM YW + V + WL TGDI +D+ G V++V R+ I G NVYP E+
Sbjct: 416 PQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEI 475
Query: 346 EAVLLQHPGIIGIVVVGIANARLTEMV-VACVRLRESWQWSESNCDQSSKNKELLLSSEV 404
E V+ PG++ + VG+ + + E+V V V+ K+ L++E
Sbjct: 476 EDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVK------------------KDPALTAED 517
Query: 405 LRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
++ H R NLTG+K PR+ + +RK P T+ GKI R E+R
Sbjct: 518 VKAHAR-ANLTGYKQPRI-IEFRKELPKTNVGKILRRELR 555
|
Length = 560 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-29
Identities = 107/405 (26%), Positives = 169/405 (41%), Gaps = 64/405 (15%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGED-DVYLHTAPLCHIG 119
+ ++ +T GTTG KG +++H L+ L A++G E ++ + PL HI
Sbjct: 205 QADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIY 264
Query: 120 GLS-SAMAMLMVGACHVFIPKFESKSA-LEAVEQHCVTSLITVPAIMADLATLIRVKKTW 177
+ MAM+++G ++ I A ++ + + + + + + L + +
Sbjct: 265 AFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCN----NEAF 320
Query: 178 KGRD--SVKKILNGGGGLPS---ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPT 232
+ D ++K L+GG L E KE T + YGMTETS P
Sbjct: 321 RKLDFSALKLTLSGGMALQLATAERWKEVTG----CAICEGYGMTETS----------PV 366
Query: 233 LETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAH 287
V+ N Q +G P P KV D VG + +G
Sbjct: 367 -------------VSVNPSQAIQVGTIGIPVPSTLCKVIDDDGNELPLGEVGELCVKGPQ 413
Query: 288 VMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEA 347
VM YW + A + + WL TGDI I + G + +V R+ I G NVYP E+E
Sbjct: 414 VMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELED 473
Query: 348 VLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQ 407
VL PG++ +G+ + + E + V K E L+ E + +
Sbjct: 474 VLAALPGVLQCAAIGVPDEKSGEAIKVFV---------------VVKPGE-TLTKEQVME 517
Query: 408 HCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452
H R NLTG+K P+ V +R P T+ GKI R E+R E +
Sbjct: 518 HMRA-NLTGYKVPKA-VEFRDELPTTNVGKILRRELRDEELKKAG 560
|
Length = 562 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 5e-29
Identities = 106/400 (26%), Positives = 170/400 (42%), Gaps = 74/400 (18%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGY----GEDDVYLHTAPLCHI 118
+I TSGTTG+PKG S K AI+ E+ + AP+ H
Sbjct: 194 TGRKGRVILLTSGTTGTPKGA--RRSGPGGIGTLK-AILDRTPWRAEEPTVI-VAPMFHA 249
Query: 119 GGLSS-AMAMLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLI-RVKK 175
G S +A + AC + +F+ ++ L+ +++H T L VP + + L V+
Sbjct: 250 WGFSQLVLAASL--ACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRN 307
Query: 176 TWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLET 235
+ GR S++ G + +++ + F + + Y TE T T
Sbjct: 308 RYSGR-SLRFAAASGSRMRPDVVIAFMDQFGDV-IYNNYNATEAGMIAT---------AT 356
Query: 236 PGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKV-------CSDGSSHVGRILTRGAHV 288
P L A P++ G+PA E+++ G VG I R
Sbjct: 357 PADLRAA-----PDTA--------GRPAEGTEIRILDQDFREVPTG--EVGTIFVRND-- 399
Query: 289 MLRYWDQFLAKPSVSTGEV---WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEV 345
QF S ST + ++ +GD+G +D+ G +++VGR + I SGGENVYP EV
Sbjct: 400 -----TQFDGYTSGSTKDFHDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEV 454
Query: 346 EAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVL 405
E L HP + V+G+ + + + + A V L+ + E L
Sbjct: 455 EKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKP----------------GASATPETL 498
Query: 406 RQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445
+QH R+ NL +K PR V+ + P +TGKI R E++
Sbjct: 499 KQHVRD-NLANYKVPRDIVVLDE-LPRGATGKILRRELQA 536
|
Length = 537 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 7e-28
Identities = 71/315 (22%), Positives = 120/315 (38%), Gaps = 44/315 (13%)
Query: 55 SLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAP 114
+ P + + I +TSG+TG PKGV I H AL A G DD L A
Sbjct: 356 TDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALAS 415
Query: 115 LCHIGGLSSAMAMLMVGAC-HVFIPKFESKSA--LEAVEQHCVTSLITVPAIMADLATLI 171
L + L+ GA + + A LE +E +T L+ VP ++ L
Sbjct: 416 LSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAA 475
Query: 172 RVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAK-LISAYGMTETSSSLTFMTLYD 230
+ ++++L+GG LP L++ A+ L++ YG TE + +
Sbjct: 476 LAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEAT---LDAPSFP 532
Query: 231 PTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKV-------CSDGSSHVGRILT 283
+ E ++P +G+P + +L + G G +
Sbjct: 533 ISAELESRVP------------------IGRPVANTQLYILDQGLRPLPLGV--PGELYI 572
Query: 284 RGAHVMLRYWDQFLAKPSVSTGE-----VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGE 338
G + L Y ++ T E TGD+ G + +GR++ ++K G
Sbjct: 573 AGLGLALGYLNR-----PDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGF 627
Query: 339 NVYPEEVEAVLLQHP 353
+ E+EA L + P
Sbjct: 628 RIELGEIEAALAEQP 642
|
Length = 642 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 7e-28
Identities = 96/384 (25%), Positives = 158/384 (41%), Gaps = 55/384 (14%)
Query: 72 FTSGTTGSPKGV-----VISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMA 126
+TSGTTG PKGV +A + I G L T PL H + +
Sbjct: 159 YTSGTTGHPKGVRRAAPTPEQAA--AAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLR 216
Query: 127 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 186
+G V P+F+ + L+ +E+H +T + VP + L L + S++ +
Sbjct: 217 AGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHV 276
Query: 187 LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 246
++ P+++ K A + + YG TE+ + +TF T D L PG
Sbjct: 277 IHAAAPCPADV-KRAMIEWWGPVIYEYYGSTESGA-VTFATSED-ALSHPGT-------- 325
Query: 247 TPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVML-RYWDQFLAKP 300
VGK AP EL+ + +G I +R A Y ++ +
Sbjct: 326 ------------VGKAAPGAELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRA 373
Query: 301 SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV 360
+ G ++ +GD+G +D G ++L R+ + SGG N+YP E+EAVL PG+ V
Sbjct: 374 EIDRGG-FITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAV 432
Query: 361 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAP 420
GI +A E ++A V + L +R + + L G+K P
Sbjct: 433 FGIPDAEFGEALMAVVEPQP----------------GATLDEADIRAQLKAR-LAGYKVP 475
Query: 421 RLFVLWRKPFPLTSTGKIRRDEVR 444
+ + P +GKI + +R
Sbjct: 476 K-HIEIMAELPREDSGKIFKRRLR 498
|
Length = 509 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-27
Identities = 82/333 (24%), Positives = 139/333 (41%), Gaps = 60/333 (18%)
Query: 114 PLCHIGGLSSAMAMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLI 171
PL H+ GL M + G V +P + +S L SL VP L L+
Sbjct: 168 PLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSL--VPT---QLQRLL 222
Query: 172 RVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDP 231
+++ W + + IL GG L+++A + +L YGMTET+S +
Sbjct: 223 QLRPQWLAQ--FRTILLGGAPAWPSLLEQARQL--QLRLAPTYGMTETASQIA------- 271
Query: 232 TLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLR 291
TL P F G+ PH ++ + + + G I + + L
Sbjct: 272 TL-----KPDDFLAG---------NNSSGQVLPHAQITIPA---NQTGNITIQAQSLALG 314
Query: 292 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 351
Y+ Q L + +T D+G +D G + ++GR + +I +GGENVYP EVEA +L
Sbjct: 315 YYPQILDSQGI------FETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILA 368
Query: 352 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 411
+ + V+G+ + E+V A K+ + L L+ ++
Sbjct: 369 TGLVQDVCVLGLPDPHWGEVVTAIY---------------VPKDPSISLEE--LKTAIKD 411
Query: 412 KNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
+ L+ FK P+ + + P GKI R +++
Sbjct: 412 Q-LSPFKQPKHW-IPVPQLPRNPQGKINRQQLQ 442
|
Length = 452 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 2e-27
Identities = 108/387 (27%), Positives = 164/387 (42%), Gaps = 61/387 (15%)
Query: 69 IICFTSGTTGSPKGVVISHSALIVQSLA-KIAIVGYGEDDVYLHTAPLCHIGGLSSAMAM 127
+I FTSGTTG PKG + H ++ A ++ DDV++ + PL GL + +
Sbjct: 151 LIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGLG-GLVL 209
Query: 128 --LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKK 185
L GA V + + L+A+++H T L T P A A LI+VK S++K
Sbjct: 210 FPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPT--AYRAMLIKVKAFDIS--SLRK 265
Query: 186 ILNGGGGLPS---ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 242
++ G LP+ + E T K+I G TE + ++ +
Sbjct: 266 CVSAGETLPAKVWQDWYERTG----LKIIDGIGATE------MLHIF---------ISAN 306
Query: 243 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFL 297
N P + GKP P E ++ D + V GR+ RG RY D
Sbjct: 307 EENAKPGAT--------GKPVPGYEARIVDDQGNEVPRGEAGRLAVRGP-TGCRYLDDER 357
Query: 298 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 357
+ V G W TGDI D+ G V R + I S G N+ EVE LL HP +
Sbjct: 358 QQEYVRDG--WNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAE 415
Query: 358 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF 417
V+G+ + ++V A + LR+ + +E L +E L+ + + +
Sbjct: 416 CAVIGVPDEERGQIVCAHIVLRDGTKATE-------------LLAERLQDFVKA-VIAPY 461
Query: 418 KAPRLFVLWRKPFPLTSTGKIRRDEVR 444
K PR + P T TGKI+R +R
Sbjct: 462 KYPREIN-FVDALPKTQTGKIQRFRLR 487
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-27
Identities = 115/387 (29%), Positives = 175/387 (45%), Gaps = 44/387 (11%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIVGY--GEDDVYLHTAPLCHIGGLSSAMAMLM 129
+TSGTT PKGVVISH + +L+ AI+G+ G VYL T P+ H G +
Sbjct: 193 YTSGTTADPKGVVISHRGAYLSTLS--AIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAA 250
Query: 130 VGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNG 189
G V + + + +E H VT + VP + L + + R +L G
Sbjct: 251 RGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLS--PRSGPVHVLTG 308
Query: 190 GGGLPSELMKEATN-SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 248
G P+ L+K+ F +++ AYG+TE + + F D +LP+
Sbjct: 309 GSPPPAALVKKVQRLGF---QVMHAYGLTEATGPVLFCEWQDEW----NRLPEN----QQ 357
Query: 249 NSVHQPQGVCVGKPAPHVELK-------VCSDGSSHVGRILTRGAHVMLRYWDQFLAKPS 301
+ QGV + A V++K V DG + +G I+ +G+ +M Y L P
Sbjct: 358 MELKARQGVSILGLA-DVDVKNKETQESVPRDGKT-MGEIVIKGSSIMKGY----LKNPK 411
Query: 302 VSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 357
+T E WL+TGD+G I G+V + R I SGGEN+ EVE VL ++P ++
Sbjct: 412 -ATSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLE 470
Query: 358 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF 417
VV + + E A V L + E D+ L+ L ++CRE NL F
Sbjct: 471 TAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDK------LVTRERDLIEYCRE-NLPHF 523
Query: 418 KAPRLFVLWRKPFPLTSTGKIRRDEVR 444
PR V ++ P GKI + ++R
Sbjct: 524 MCPRKVVFLQE-LPKNGNGKILKPKLR 549
|
Length = 579 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-27
Identities = 99/385 (25%), Positives = 146/385 (37%), Gaps = 65/385 (16%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMA 126
AVI+ FTSG+ G PKGVV+SH L+ A++ +DV L PL H GL+ +
Sbjct: 148 AVIL-FTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFGLTVTLL 206
Query: 127 MLMVGACHVFI---PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD-- 181
+ ++ V P ++K E + + T L P + A + D
Sbjct: 207 LPLLTGLRVVYYPNP-LDAKKIAELIRDYKATILCGTPTFLRGYA------RNAHPEDFS 259
Query: 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 241
S++ ++ G LP + F ++ YG TE S P
Sbjct: 260 SLRLVVAGAEKLPEATRELFEEKFGIR-ILEGYGATECS-------------------PV 299
Query: 242 AFGNVTPNSVHQPQGVCVGKPAPHVELKV------CSDGSSHVGRILTRGAHVMLRYWDQ 295
N TP G VG+P P +E+++ G +L RG +VM Y +
Sbjct: 300 ISVN-TPM--GNKPG-TVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNN 355
Query: 296 FLAKPSVST-GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 354
V G+ W DTGDIG ID+ G + +VGR K GGE V VE +L +
Sbjct: 356 EEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILP 415
Query: 355 IIG-IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKN 413
V + + + E +V + + D L RE
Sbjct: 416 EDSLHAAVEVPDEKKGEKIVLLT--------TTEDLDPEE-----------LNAILREAG 456
Query: 414 LTGFKAPRLFVLWRKPFPLTSTGKI 438
L PR +L PL +GK
Sbjct: 457 LPNLAVPRK-ILHVDEIPLLGSGKT 480
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 7e-27
Identities = 112/400 (28%), Positives = 168/400 (42%), Gaps = 77/400 (19%)
Query: 68 VIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLH-TAPLCHIGGLSSAMA 126
+++ FTSGTTG PK V+ +H + V L+ + +G D++L+ ++P SS A
Sbjct: 87 ILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGDIHLNISSPGWAKHAWSSFFA 146
Query: 127 MLMVGACHVFI---PKFESKSALEAVEQHCVTSLITVPA-----IMADLATLIRVKKTWK 178
GA VF P+F+++ L A+E+ VT+ P I DLA V+
Sbjct: 147 PWNAGAT-VFGINYPRFDARRYLGALEKFGVTTFCAPPTVWRMFIQQDLAQY-DVRL--- 201
Query: 179 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLIS---AYGMTETSSSLTFMTLYDPTLET 235
R++V G P L E KA ++ YG TET++ + +
Sbjct: 202 -REAV------SAGEP--LNPEVIERVKKAWGLTIRDGYGQTETTAMIG---------NS 243
Query: 236 PGQLPQAFGNVTPNSVHQPQGVCVGKPAP--HVEL-----KVCSDGSSHVG-RILTRGAH 287
PGQ V P S+ G+P P V L K + + R
Sbjct: 244 PGQ------KVKPGSM--------GRPLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPIG 289
Query: 288 VMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEA 347
+ML Y + G + TGD D+ G +W VGR + KS + P EVE+
Sbjct: 290 LMLGYMGDPEKTAAAFRGGYYR-TGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVES 348
Query: 348 VLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQ 407
LL+HP + VV + + A + L+ ++ S +EL L L
Sbjct: 349 ALLEHPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEPS----------RELALE---LFA 395
Query: 408 HCREKNLTGFKAPRL--FVLWRKPFPLTSTGKIRRDEVRR 445
H RE+ L +K R FV P T +GKIRR E+R+
Sbjct: 396 HVRER-LAPYKRIRRIEFV---GELPKTISGKIRRVELRK 431
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-26
Identities = 103/399 (25%), Positives = 158/399 (39%), Gaps = 62/399 (15%)
Query: 62 WAPEGAVIICF---TSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHI 118
P A + F + GTTG+PK + +H+ A I G+ + VYL P H
Sbjct: 183 APPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHN 242
Query: 119 GGLSS--AMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT 176
LSS A+ + + G V P + +E+H VT VP LA+L
Sbjct: 243 FPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPP----LASLWLQAAE 298
Query: 177 WKGRD-SVKKILNGGGGLPSELMKEATNSFPKA---KLISAYGMTETSSSLTFMTLYDPT 232
W+ D S ++L GG + L P +L +GM E + + L DP
Sbjct: 299 WERADLSSLRLLQVGG---ARLSATLARRVPAVLGCQLQQVFGMAE--GLVNYTRLDDP- 352
Query: 233 LETPGQLPQAFGNVTPNSVHQPQGVCVGKP-APHVELKVCSD-----GSSHVGRILTRGA 286
P + QG +P +P E++V VG +LTRG
Sbjct: 353 ---------------PEIIIHTQG----RPLSPDDEVRVVDADGNPVAPGEVGELLTRGP 393
Query: 287 HVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE 346
+ + Y+ + + +GD+ D G + + GR +I GGE + EEVE
Sbjct: 394 YTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVE 453
Query: 347 AVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 406
+LL+HP + +V + + L E A + ++E L + LR
Sbjct: 454 NLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEP-----------------PLRAAQLR 496
Query: 407 QHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445
+ RE+ L FK P PLT+ GKI + +RR
Sbjct: 497 RFLRERGLAAFKLPDRIEFV-DSLPLTAVGKIDKKALRR 534
|
Length = 542 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 1e-26
Identities = 94/326 (28%), Positives = 146/326 (44%), Gaps = 59/326 (18%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAM-AML 128
I +TSGTTG KG ++SH L+ +L + + DDV +H P+ H GL A L
Sbjct: 161 ILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVAL 220
Query: 129 MVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI-L 187
+ GA +F+PKF+ + L + + T ++ VP L +++ R++ + L
Sbjct: 221 LAGASMIFLPKFDPDAVLALMPR--ATVMMGVPTFYTRL-----LQEPRLTREAAAHMRL 273
Query: 188 NGGGGLPSELMKEATNSFPKAK----LISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 243
G P L+ E F + + ++ YGMTET+ M +P
Sbjct: 274 FISGSAP--LLAETHREF-QERTGHAILERYGMTETN-----MNTSNPYD---------- 315
Query: 244 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH------VGRILTRGAHVMLRYW---- 293
G +V G P P V L+V + +G I +G +V YW
Sbjct: 316 GERRAGTV--------GFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPE 367
Query: 294 ---DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 350
++F + + TGD+G ID+ G V +VGR I SGG NVYP+EVE +
Sbjct: 368 KTAEEF-------RADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEID 420
Query: 351 QHPGIIGIVVVGIANARLTEMVVACV 376
+ PG++ V+G+ + E V A V
Sbjct: 421 ELPGVVESAVIGVPHPDFGEGVTAVV 446
|
Length = 504 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 4e-26
Identities = 110/395 (27%), Positives = 159/395 (40%), Gaps = 60/395 (15%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
PE ++ FTSGTTG PKGV+ H A++ ++ DDVY TA + G S
Sbjct: 87 DPEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVYWCTADPGWVTGTS 146
Query: 123 SAM-AMLMVGACHV-FIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
+ A L+ G V +F+++ +E+ VT T P L L+R R
Sbjct: 147 YGIIAPLLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPT---ALRMLMRAGPELAAR 203
Query: 181 ---DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 237
S++ I + G L E++ + + TET + M P +
Sbjct: 204 YDLSSLRHIASVGEPLNPEVVVWGEKVLGM-PIHDTWWQTETGA---IMIANYPGIP--- 256
Query: 238 QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS---------DGSSHVGRI-LTRGAH 287
V P S+ G+P P +E V G VG + L G
Sbjct: 257 --------VKPGSM--------GRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWP 300
Query: 288 VMLR-YW-DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEV 345
M R Y ++ S G W TGD+ D+ G W VGR + IK+ G V P EV
Sbjct: 301 SMFRGYLGNEERYASSFVDG--WYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEV 358
Query: 346 EAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVL 405
E+ L++HP + V+G + E+V A V LR ++ SE EL L
Sbjct: 359 ESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEPSE----------EL---RREL 405
Query: 406 RQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
R++ L APR + P T +GKI R
Sbjct: 406 LTFARQR-LGAAVAPREIH-FVDNLPKTRSGKIMR 438
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 6e-26
Identities = 97/408 (23%), Positives = 158/408 (38%), Gaps = 91/408 (22%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALI--VQSLAKIAIVGYGEDDVYLHTAPLCHIGG 120
+ + +TSG+TG PKGV + H ++ V++ IA+ DD +L +PL
Sbjct: 125 DADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTNYIAL---DPDDRFLQLSPL----S 177
Query: 121 LSSAM----AMLMVGACHVFIPK--FESKSAL-EAVEQHCVTSL-ITVP----AIMADLA 168
++ L+ G V I K L + + VT L +T + D
Sbjct: 178 FDASTFEIWGALLNGGRLVLIDKETLLDPDRLARLIAEQGVTVLWLTAALFNQLVDEDPE 237
Query: 169 TLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTL 228
L ++++L GG L ++ + P +LI+ YG TE + TF T
Sbjct: 238 AL----------AGLRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTENT---TFSTC 284
Query: 229 Y--DPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPH-------VELKVCSDGSSHVG 279
+ E +P +G+P P+ E + G G
Sbjct: 285 HVITRLDEAADSIP------------------IGRPIPNTTVYILDEEGQPVPIGV--PG 324
Query: 280 RILTRGAHVMLRYWDQ-------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGR 332
+ G + L Y ++ F+ P GE TGD+ GN+ +GR + +
Sbjct: 325 ELYVGGDGLALGYLNRPELTAERFVPDPFGP-GERLYRTGDLARWRPDGNIEFLGRIDRQ 383
Query: 333 IKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQS 392
+K G + E+E LLQHPG+ V+ +A + +VA V R +
Sbjct: 384 VKIRGFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGA----------- 432
Query: 393 SKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
L + LR H E+ L + P FV+ + PLT+ GK+ R
Sbjct: 433 -------LDAAELRAHLAER-LPAYMVPAAFVVLDE-LPLTANGKVDR 471
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 8e-26
Identities = 104/406 (25%), Positives = 166/406 (40%), Gaps = 63/406 (15%)
Query: 62 WAPEG----AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH 117
W P ++ + +TSGTT SPKGVV+ H + +L+ I G E VYL T P+ H
Sbjct: 188 WKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFH 247
Query: 118 IGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 177
G + + ++ + + +K+ A+ + VT P ++ + + +
Sbjct: 248 CNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETIL 307
Query: 178 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 237
V + G PS L + F ++ YG++ET T + + P ++
Sbjct: 308 PLPRVVHVMTAGAAPPPSVLFAMSEKGF---RVTHTYGLSETYGPST-VCAWKPEWDS-- 361
Query: 238 QLPQAFGNVTPNSVHQPQGV-------------CVGKPAPHVELKVCSDGSSHVGRILTR 284
LP ++ QGV KP P +DG + +G I+ R
Sbjct: 362 -LPPE----EQARLNARQGVRYIGLEGLDVVDTKTMKPVP-------ADGKT-MGEIVMR 408
Query: 285 GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEE 344
G VM Y A W +GD+G G + + R I SGGEN+ E
Sbjct: 409 GNMVMKGYLKNPKANEEAFANG-WFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLE 467
Query: 345 VEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNC------DQSSKNKEL 398
VE V+ HP ++ VV AR E +W ES C K+ E
Sbjct: 468 VENVVYTHPAVLEASVV----ARPDE------------RWGESPCAFVTLKPGVDKSDEA 511
Query: 399 LLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
L+ ++++ CRE+ L + P+ V P P T+TGKI++ +R
Sbjct: 512 ALAEDIMK-FCRER-LPAYWVPKSVVF--GPLPKTATGKIQKHVLR 553
|
Length = 567 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-25
Identities = 107/403 (26%), Positives = 154/403 (38%), Gaps = 72/403 (17%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
P+ + FTSG+TG PKGV+I+H A + L G G D L + L LS
Sbjct: 124 DPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADRVLALSALHF--DLS 181
Query: 123 --SAMAMLMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTW 177
L GA V + + E V++H VT +VPA+M L T
Sbjct: 182 VYDIFGALSAGAALVLPDEARRRDPDHWAELVQRHGVTVWNSVPALMDMLLTYAEDAA-- 239
Query: 178 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS--SSLTFMTLYDPTLET 235
+ S++ ++ G +P +L + P A+L+S G TE S S Y
Sbjct: 240 RLLPSLRLVMLSGDWIPLDLPRRLRALAPGARLVSLGGATEASIWS-----IYYP----- 289
Query: 236 PGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVML 290
+V P+ P GKP P+ + V + G + G V L
Sbjct: 290 -------IDDVDPDWRSIP----YGKPLPNQKFYVLDEDGRDCPDWVPGELYIGGVGVAL 338
Query: 291 RYW-------DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPE 343
YW ++F+ TGE TGD+G G + +GR + ++K G V
Sbjct: 339 GYWGDPELTAERFITHR---TGERLYRTGDLGRYRPDGTIEFLGRADHQVKIRGYRVELG 395
Query: 344 EVEAVLLQHPGIIGIVVVGIANA---RLTEMVVACVRLRESWQWSESNCDQSSKNKELLL 400
E+EA L +HPG+ VVV + + L VVA
Sbjct: 396 EIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAVDA------------------ 437
Query: 401 SSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 443
VLR E L + P FV PLT+ GK+ R +
Sbjct: 438 --AVLRAALAEL-LPAYMVPSRFV-VLDALPLTANGKVDRKAL 476
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-25
Identities = 89/328 (27%), Positives = 142/328 (43%), Gaps = 37/328 (11%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIA--IVGYGEDDVYLHTAPLCHIGGLSSA 124
A +C+TSGTTG PKGV+ SH + ++ +L +G D L PL H A
Sbjct: 179 AAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIA 238
Query: 125 MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 183
+ +G V K + S E ++ VT VP + L L ++K +
Sbjct: 239 FSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVW--LMLLQYMEKEGLKLPHL 296
Query: 184 KKILNGGGGLPSELMKEATNSFPK--AKLISAYGMTETSSSLTFMTLYDPTLETPG--QL 239
K ++ GG +P ++K +F ++ A+GMTE S T L P + PG +L
Sbjct: 297 KMVVCGGSAMPRSMIK----AFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARL 352
Query: 240 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-------GRILTRGAHVMLRY 292
V Q QG P VE+K+ D + GR+ RG V Y
Sbjct: 353 ----------DVLQKQG----YPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAY 398
Query: 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
+ + + + DTGD+ +ID G + + R IKSGGE + ++E + + H
Sbjct: 399 ---YRVDGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGH 455
Query: 353 PGIIGIVVVGIANARLTEMVVACVRLRE 380
P + V+G+ + + E + V+L+
Sbjct: 456 PKVAEAAVIGVYHPKWDERPLLIVQLKP 483
|
Length = 542 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 8e-25
Identities = 109/392 (27%), Positives = 173/392 (44%), Gaps = 47/392 (11%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIVG---YGEDDVYLHTAPLCHIGGLSS-AMAM 127
F+SGTTG KGV+++H L+ + + VG G+ V L P HI G++ A
Sbjct: 191 FSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQV-VTLGLIPFFHIYGITGICCAT 249
Query: 128 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 187
L V + +FE ++ L A+ V+ VP I+ +L V++ + ++ I+
Sbjct: 250 LRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIM 309
Query: 188 NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 247
L EL+ FP ++ AYG+TE S +TL T G + G
Sbjct: 310 TAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSC----ITL------THGDPEKGHGIAK 359
Query: 248 PNSVHQPQGVCVGKPAPHVELKVCS--DGSS----HVGRILTRGAHVMLRYWDQFLAKPS 301
NSV G P++E+K G S G + R VM Y++
Sbjct: 360 KNSV--------GFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDR 411
Query: 302 VSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361
+ WL TGDIG IDD G++++V R IK G V P E+EA+LL HP + VV
Sbjct: 412 TIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV 471
Query: 362 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR 421
+ + E+ ACV + + +K E + + V N+ +K R
Sbjct: 472 PLPDEEAGEIPAACVVI-----------NPKAKESEEDILNFV------AANVAHYKKVR 514
Query: 422 LFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 453
+ V + P + +GKI R ++ +++S K+
Sbjct: 515 V-VQFVDSIPKSLSGKIMRRLLKEKMLSINKA 545
|
Length = 546 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 93/381 (24%), Positives = 156/381 (40%), Gaps = 79/381 (20%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGE--DDVYLHTAPLCHIGGLSSAM 125
I FTSG+TG+PKGVV +H A+I + YG ++ L T PL + G + M
Sbjct: 179 ILFTSGSTGTPKGVVYTHGMF----EAQIEALREDYGIEPGEIDLPTFPLFALFGPALGM 234
Query: 126 AMLMVGACHVFIPKFE-SKSA-------LEAVEQHCVTSLITVPAIMADLATLIRVKKTW 177
+ IP + ++ A A+E++ VT+L PA++ L +
Sbjct: 235 TSV--------IPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLG--RYGEANG 284
Query: 178 KGRDSVKKILNGGGGLPSELMKEATNSFPK-AKLISAYGMTET--SSSLTFMTLYDPTLE 234
S++++++ G +P +++ P A++++ YG TE SS+ + T
Sbjct: 285 IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFAT-- 342
Query: 235 TPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKV---------CSDGSS-----HVGR 280
T G+CVG+P VE+++ D + +G
Sbjct: 343 ---------RAAT----DNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGE 389
Query: 281 ILTRGAHVMLRYWDQ----FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSG 336
I+ G V Y+++ LAK G+VW GD+G +D G +W GR+ R+++
Sbjct: 390 IVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETA 449
Query: 337 GENVYPEEVEAVLLQHPGII--GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSK 394
G +Y E + HPG+ +V VG+ A + V CV E +
Sbjct: 450 GGTLYTIPCERIFNTHPGVKRSALVGVGVPGA---QRPVLCV---------ELEPGVACS 497
Query: 395 NKELLLSSEVLRQHCREKNLT 415
L + LR T
Sbjct: 498 KSALY---QELRALAAAHPHT 515
|
Length = 552 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-24
Identities = 92/349 (26%), Positives = 150/349 (42%), Gaps = 39/349 (11%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-S 122
P+ I F+SG+TG PKGV+++H L+ A I +DV+L PL H GL
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTHDMGLIG 164
Query: 123 SAMAMLMVGACHVFIP--KFESKSAL--EAVEQHCVTSLITVPAIMADLATLIRVKKTWK 178
+ +G +P F + L + QH T L + P L++ KT K
Sbjct: 165 FHLTPTALGINQYLMPTRLFIRRPLLWLDKASQHRATILSS-PNF--GYKYLLKHFKTEK 221
Query: 179 GRD----SVKKILNGGGGLPSELMKEATNSFPKAKL-----ISAYGMTETSSSLTFMTLY 229
D SV+ I NG + ++L +E L YG+ E + +++F
Sbjct: 222 IIDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPG 281
Query: 230 DP---------TLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GS 275
+P L+ ++ + + P + V VG P E+++ D
Sbjct: 282 EPFKTVCLDRNHLKVGVKIIE----IDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVLPD 337
Query: 276 SHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKS 335
+G I +G +V Y++ A T + WL TGD+G + + G + + GR I
Sbjct: 338 RTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLRN-GRLVITGRAKDIIIV 396
Query: 336 GGENVYPEEVEAVLLQHPGI-IG-IVVVGIANARL-TEMVVACVRLRES 381
G+N YP ++E V Q GI +G + G+ + + +E VV V R+S
Sbjct: 397 NGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQS 445
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-24
Identities = 103/414 (24%), Positives = 159/414 (38%), Gaps = 90/414 (21%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTA--------- 113
P+ + +T GTTG KG + H ++ L + + +L A
Sbjct: 202 GPDDVAFLQYTGGTTGVSKGATLLHRNIVANVL---------QMEAWLQPAFEKKPRPDQ 252
Query: 114 -------PLCHIGGLSSAMAMLM-VGACHVFIPKFESKSA----LEAVEQHCVTSLITV- 160
PL HI L+ + M G ++ IP L+ + H ++ T+
Sbjct: 253 LNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLY 312
Query: 161 PAIM--ADLATLIRVKKTWKGRD-SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217
A++ D L D S + NGGG + E + YG++
Sbjct: 313 NALLNNPDFDKL----------DFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLS 362
Query: 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-GSS 276
ETS T P + G +G P P E+ + D G+
Sbjct: 363 ETSPVAT---------------------CNPVDATEFSG-TIGLPLPSTEVSIRDDDGND 400
Query: 277 ----HVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGR 332
G I RG VM YW++ V T + + TGD+G +D+ G +V R+
Sbjct: 401 LPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDM 460
Query: 333 IKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQS 392
I G NVYP E+E V+ HPG++ + VG+ + E V V
Sbjct: 461 ILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFV---------------- 504
Query: 393 SKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446
K+ L+ E ++ C+E LT +K P+ FV +R P T+ GKI R E+R
Sbjct: 505 -VKKDPALTEEDVKAFCKE-RLTNYKRPK-FVEFRTELPKTNVGKILRRELRDG 555
|
Length = 557 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-24
Identities = 105/397 (26%), Positives = 161/397 (40%), Gaps = 56/397 (14%)
Query: 63 APEGA----VIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHI 118
PEG +I FT GTTG PK V +H+ + A I D + PL H
Sbjct: 170 TPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHG 229
Query: 119 GGLSSAMAMLMVGACHVFIP---KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK 175
GL +A+ + V +P +F + + + ++ T VP I L +
Sbjct: 230 HGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP 289
Query: 176 TWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS--SSLTFMTLYDPTL 233
+ + +++ I + L +E + F A ++ A+GMTE + + T + T
Sbjct: 290 SGRKPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQT- 347
Query: 234 ETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS----HVGRILTRGAHVM 289
E P V+ V + G + + V SDG VG + RG V+
Sbjct: 348 ENPV--------VSTGLVGRSTG-------AQIRI-VGSDGLPLPAGAVGEVWLRGTTVV 391
Query: 290 LRYWDQFLAKPSVSTGEV---WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE 346
Y L P+++ WL TGD+GS+ G++ + GR I GGE + PE VE
Sbjct: 392 RGY----LGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVE 447
Query: 347 AVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 406
VL HP ++ V G+ + E V A + RES ++E L
Sbjct: 448 GVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRES----------------APPTAEELV 491
Query: 407 QHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 443
Q CRE+ L F+ P F P T+ G + R V
Sbjct: 492 QFCRER-LAAFEIPASFQE-ASGLPHTAKGSLDRRAV 526
|
Length = 534 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 5e-23
Identities = 102/407 (25%), Positives = 153/407 (37%), Gaps = 93/407 (22%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALI--VQSLAKIAIVGYGEDDVYLHTAPLC-HIGG 120
P+ + +TSG+TG PKGV +SH AL+ + S+A+ G G D L + I
Sbjct: 92 PDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARR--PGLGASDRLLAVTTISFDI-- 147
Query: 121 LSSAMAM---LMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAI--MADLATLIR 172
S + + L+ GA V + + +T + PA M LA
Sbjct: 148 --SVLELLLPLLSGATVVIASAETVRDPERLARLIADERITIMQATPATWRML-LAA--- 201
Query: 173 VKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPT 232
W+GR+S+ L GG LP +L +L+S T + L M Y PT
Sbjct: 202 ---GWRGRESLT-ALCGGEALPRDL---------AERLLS------TGAELWNM--YGPT 240
Query: 233 LETP-----GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-------GSSHVGR 280
ET ++ A G VT +G+P + ++ V + G G
Sbjct: 241 -ETTIWSTCARVTAADGPVT-----------IGRPIANTQVYVLDEDLQPVPPGV--PGE 286
Query: 281 ILTRGAHVMLRYWDQ-------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRI 333
+ G V Y + F+ P G TGD+ G + +GR + ++
Sbjct: 287 LYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQV 346
Query: 334 KSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSS 393
K G + E+EA L HPG+ VVV + +VA V +
Sbjct: 347 KIRGFRIELGEIEAALRAHPGVADAVVVVREEGPGDQRLVAYVVPKAGAA---------- 396
Query: 394 KNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
+E LR R L + P FV + PLT GK+ R
Sbjct: 397 ------PDAEALRAALRAT-LPAYMVPAAFVQLDE-LPLTPNGKVDR 435
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 6e-23
Identities = 102/409 (24%), Positives = 152/409 (37%), Gaps = 62/409 (15%)
Query: 50 GYSLRSLPFTHSWAPEGAV------IICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGY 103
G+S LP + AP AV I +TSGTTG KGV H+ +
Sbjct: 159 GWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEI 218
Query: 104 GEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAI 163
G DDV T PL H L++ L+ GA +V P+F + AV +H T + A+
Sbjct: 219 GADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAM 278
Query: 164 MADLATLIRVKKTWKGRDSVKKILNG-GGGLPSELMKEATNSFPKAKLISAYGMTETSSS 222
++ I + + + D ++ G G+P+ L F L+ YG TET+
Sbjct: 279 VS-----ILLSQPARESDRAHRVRVALGPGVPAALHAAFRERFGVD-LLDGYGSTETNF- 331
Query: 223 LTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV---- 278
+ +G+ AP E +V + +
Sbjct: 332 -------------------VIAVTHG----SQRPGSMGRLAPGFEARVVDEHDQELPDGE 368
Query: 279 -GRILTRGA--HVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKS 335
G +L R + K + +W TGD D G V R I+
Sbjct: 369 PGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRR 428
Query: 336 GGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKN 395
GEN+ EVE VLL HP + V + + + V+A V LR+
Sbjct: 429 RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTA------------ 476
Query: 396 KELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
L L +HC E L F PR +V + P T GK+++ +R
Sbjct: 477 ----LEPVALVRHC-EPRLAYFAVPR-YVEFVAALPKTENGKVQKFVLR 519
|
Length = 542 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-23
Identities = 95/331 (28%), Positives = 145/331 (43%), Gaps = 55/331 (16%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLS 122
P+ +I +TSGTTG PKGVV+S A I L +A + DDV +H PL H+ GL
Sbjct: 127 PDAPALIVYTSGTTGPPKGVVLSRRA-IAADLDALAEAWQWTADDVLVHGLPLFHVHGLV 185
Query: 123 -SAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 181
+ L +G V + ++ +A+ + T VP + + +A + +
Sbjct: 186 LGVLGPLRIGNRFVHTGRPTPEAYAQALSEGG-TLYFGVPTVWSRIA---ADPEAARALR 241
Query: 182 SVKKILNGGGGLPS---ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 238
+ +++G LP + + T P + YGMTET +TL
Sbjct: 242 GARLLVSGSAALPVPVFDRLAALTGHRP----VERYGMTET-----LITLS--------- 283
Query: 239 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELK--------VCSDGSSHVGRILTRGAHVML 290
+A G P V G P VE + V DG + VG + RG +
Sbjct: 284 -TRADGERRPGWV--------GLPLAGVETRLVDEDGGPVPHDGET-VGELQVRGPTL-- 331
Query: 291 RYWDQFLAKPSVS----TGEVWLDTGDIGSIDDGGNVWLVGRRN-GRIKSGGENVYPEEV 345
+D +L +P + T + W TGD+ +D G +VGR + IKSGG + E+
Sbjct: 332 --FDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEI 389
Query: 346 EAVLLQHPGIIGIVVVGIANARLTEMVVACV 376
E LL HPG+ VVG+ + L + +VA V
Sbjct: 390 ETALLGHPGVREAAVVGVPDDDLGQRIVAYV 420
|
Length = 471 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-23
Identities = 91/321 (28%), Positives = 124/321 (38%), Gaps = 63/321 (19%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLM 129
I +TSGTTG PKGV++S A + I I+G +D L PL HI +
Sbjct: 142 IVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSL 201
Query: 130 VGACHVFIPKFESKSALEAVEQHCV-TSLITVP--------AIMADLA------------ 168
VF ES A Q T +VP I+A L
Sbjct: 202 YSGAEVFFV--ESLDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLLLKIPI 259
Query: 169 --TLIRVKKTWK--GRDSVKKILNGGGGLPSELMKEATNSFPKA--KLISAYGMTETSSS 222
+L++ KK K G D + +G +P L+ + K + YGMTE +
Sbjct: 260 LSSLVK-KKILKGLGLDQARLAGSGAAPMPPALI----AWYRKLGLPICEGYGMTENFAY 314
Query: 223 LTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRIL 282
T D + T VGKP P VELK+ S G IL
Sbjct: 315 STLNYPGDRRIGT-----------------------VGKPIPGVELKI-----SEDGEIL 346
Query: 283 TRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVY 341
R +M Y+ T + WL TGD G ID+ G + + GR K S G+ V
Sbjct: 347 IRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVA 406
Query: 342 PEEVEAVLLQHPGIIGIVVVG 362
P +E +L +P + + VVG
Sbjct: 407 PAPIENLLSANPHVEQVCVVG 427
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-23
Identities = 98/337 (29%), Positives = 145/337 (43%), Gaps = 53/337 (15%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSAL-----IVQSLAKIAIVGYGEDDVYLHTAPLCHI 118
P+ ++ +T GTTG PKG +++H L I K + G+ + + PL HI
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHI 250
Query: 119 GGLSSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 177
L+ + L G +F+ + +E+ T VP + LA ++K
Sbjct: 251 YALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEK-- 308
Query: 178 KGRDSVKKILNGGGGLPSELMKEATNSFPKA---KLISAYGMTETSSSLTFMTLYDPTLE 234
RD G GG P L E N F + KL S +GMTET S
Sbjct: 309 --RDLSSLATIGSGGAP--LPVEVANFFERKTGLKLKSGWGMTETCS------------- 351
Query: 235 TPGQLPQAFGNVTPNSVHQPQGV----CVGKPAPHVELKVCS-DGSS------HVGRILT 283
P + H P+G +G P +EL V S D + VG +
Sbjct: 352 -------------PGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRI 398
Query: 284 RGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPE 343
RG +V YW++ G+ +L TGDIG +D G +LV R+ I SGG NVYP+
Sbjct: 399 RGPNVTRGYWNRPEESAEAFVGDRFL-TGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQ 457
Query: 344 EVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRE 380
+E + +HPG+ ++V+GI + E A V+LR
Sbjct: 458 MIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRP 494
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-22
Identities = 89/315 (28%), Positives = 137/315 (43%), Gaps = 39/315 (12%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS 123
PE +I FTSGT PKGV ++H+ L+ A + EDDV + P H G +S
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNS 241
Query: 124 -AMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 181
+ L+ G VF K +E +++ VT L + P + L KK
Sbjct: 242 CTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI--LKTAKKQESCLP 299
Query: 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 241
S++ ++ GG L +EA +FP +L YG TE S +T T+ P E+
Sbjct: 300 SLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKHES------ 353
Query: 242 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD------GSSHVGRILTRGAHVMLRYWDQ 295
CVG P +++ + S+ S G +LTRG + Y +
Sbjct: 354 ----------------CVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGE 397
Query: 296 FLAKPSVS-TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH-- 352
+ V GE W TGD+G +D G ++L GR + +K G E V E +E++L++
Sbjct: 398 DFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFG 457
Query: 353 ----PGIIGIVVVGI 363
+VV G+
Sbjct: 458 QNAADHAGPLVVCGL 472
|
Length = 539 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 9e-22
Identities = 116/405 (28%), Positives = 173/405 (42%), Gaps = 88/405 (21%)
Query: 69 IICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGY----GEDDVYLHTAPLCHIGGLSSA 124
++ FTSGTTG PK V H+ L I Y E ++L A G A
Sbjct: 189 LVYFTSGTTGMPKMVEHDHT----YPLGHIVTAKYWQNVKEGGLHLTVAD----TGWGKA 240
Query: 125 M-----AMLMVGACHVFI---PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT 176
+ + GA VF+ KF+ K+ LE +E++ VT+ P I LI+ +
Sbjct: 241 VWGKLYGQWIAGAA-VFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTI---YRFLIKEDLS 296
Query: 177 WKGRDSVKKILNGGGGLPSEL---MKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTL 233
S++ G L E+ KE T KL+ +G TET+ ++ +P
Sbjct: 297 KYDLSSLRYCTTAGEPLNPEVFNTFKEKTG----IKLMEGFGQTETTLTIATFPWMEPK- 351
Query: 234 ETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC-SDGSS----HVGRILTR---G 285
PG + GKP+P ++ + DG S G I+ R G
Sbjct: 352 --PGSM--------------------GKPSPGYDIDIIDPDGKSCEVGEEGEIVIRTSDG 389
Query: 286 AHVMLRYWDQFLAKPSVSTGEVWLD----TGDIGSIDDGGNVWLVGRRNGRIKSGGENVY 341
+ L + + P T EVW D TGD +D+ G +W VGR + IKS G +
Sbjct: 390 KPLGL--FMGYYRDPE-RTAEVWHDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIG 446
Query: 342 PEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLS 401
P EVE+ L+QHP ++ V G+ + ++V A + L + ++ SE L
Sbjct: 447 PFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKGYEPSEE------------LK 494
Query: 402 SEVLRQHCREKNLTGFKAPRL--FVLWRKPFPLTSTGKIRRDEVR 444
E L+ H + K +K PR+ FV P T +GKIRR E+R
Sbjct: 495 KE-LQDHVK-KVTAPYKYPRIIEFV---DELPKTISGKIRRVEIR 534
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 2e-21
Identities = 111/416 (26%), Positives = 165/416 (39%), Gaps = 94/416 (22%)
Query: 52 SLRSLPFTHS--WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVY 109
L+ + H+ W P+ + TSG+TG PK V + A + + ++++ + D +
Sbjct: 120 HLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSW 179
Query: 110 LHTAPLCHIGGLS------SAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAI 163
L + PL H+ G A A L+V AL H SL VP
Sbjct: 180 LLSLPLFHVSGQGIVWRWLYAGATLVVRDKQPLE------QALAGC-THA--SL--VP-- 226
Query: 164 MADLAT-LIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISA---YGMTET 219
T L R+ S+K +L GG +P EL ++A + I YG+TE
Sbjct: 227 -----TQLWRLLDNRSEPLSLKAVLLGGAAIPVELTEQAE-----QQGIRCWCGYGLTEM 276
Query: 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELK-VCSDGSSHV 278
+S++ D G VG P P E+K V
Sbjct: 277 ASTVC-AKRAD---GLAG---------------------VGSPLPGREVKLVD------- 304
Query: 279 GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGE 338
G I RGA + L YW Q P V+ E W T D G G + ++GR + SGGE
Sbjct: 305 GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGE 362
Query: 339 NVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKEL 398
+ PEE+E V+ QHP + + VV +A+A + VA V S+S
Sbjct: 363 GIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVE-------SDSEAAV------- 408
Query: 399 LLSSEVLRQHCREKNLTGFKAP-RLFVLWRKPFPLTSTG-KIRRDEVRREVMSHLK 452
L + ++K L F+ P ++L P L + G KI R ++ V L
Sbjct: 409 ----VNLAEWLQDK-LARFQQPVAYYLL---PPELKNGGIKISRQALKEWVAQQLG 456
|
Length = 458 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 5e-21
Identities = 97/393 (24%), Positives = 157/393 (39%), Gaps = 60/393 (15%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTA-PLCHIGGLS 122
+ +TSGTTG PKGV + +AL + +DDV+ + A P G
Sbjct: 87 DDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRDDDVFWNIADPGWAYGLYY 146
Query: 123 SAMAMLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVP----AIMADLATLIRVKKTW 177
+ L +G VF+ F +++ + +E+ VT+ P +MA A K
Sbjct: 147 AITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAARIKL- 205
Query: 178 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 237
++ + G L E+++ + + YG TET M +
Sbjct: 206 ----KLRVASSAGEPLNPEVVRWFQANL-GVTIHDHYGQTETG-----MPV--------- 246
Query: 238 QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRY 292
GN + G +G P P + V D + G++ A L +
Sbjct: 247 ------GNHHALAHEVRAG-SMGLPLPGYRIAVLDDDGQPLADGEPGQLAIDVASSPLLW 299
Query: 293 WDQFLAKPSVSTGEV---WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 349
+ + P + + W TGD+ D+ G W +GR + I S G + P +VE+ L
Sbjct: 300 FSGYWDDPEKTAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESAL 359
Query: 350 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHC 409
L+HP + VVG+ + E+V A V L+E + S+ EL +E L+
Sbjct: 360 LEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSD----------EL---AEELQLFV 406
Query: 410 REKNLTGFKAPRL--FVLWRKPFPLTSTGKIRR 440
+ K L+ PR FV P T +GKI+R
Sbjct: 407 K-KRLSAHAYPREVEFV---PALPKTPSGKIQR 435
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 8e-21
Identities = 108/422 (25%), Positives = 151/422 (35%), Gaps = 98/422 (23%)
Query: 63 APEGAVIICFT-SGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL 121
A A + FT SGTT PK V+ + L+ + A GY V L P C + G
Sbjct: 178 ADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGF 237
Query: 122 SSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 181
S+ + L GA V P F++ A+ +H RV T+ +
Sbjct: 238 STLLGALAGGAPLVCEPVFDAARTARALRRH-------------------RVTHTFGNDE 278
Query: 182 SVKKILNGGGG---LPS--------------ELMKEA-TNSFPKAKLISAYGMTETSSSL 223
+++IL+ G PS EL A P L YG +E
Sbjct: 279 MLRRILDTAGERADFPSARLFGFASFAPALGELAALARARGVPLTGL---YGSSEV---Q 332
Query: 224 TFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKV--------CSDG 274
+ L T P SV G G+PA P ++ DG
Sbjct: 333 ALVALQPATD--------------PVSVRIEGG---GRPASPEARVRARDPQDGALLPDG 375
Query: 275 SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIG-SIDDGGNVWLVGRRNGRI 333
S G I R +M Y D A T + + TGD+G + DG V+ R +
Sbjct: 376 ES--GEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVY-QTRMGDSL 432
Query: 334 KSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSS 393
+ GG V P E+E L PG+ VVG T VA V +
Sbjct: 433 RLGGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTV-PVAFVIPTDGAS---------- 481
Query: 394 KNKELLLSSEVLRQHCREKNLTGFKAP-RLFVLWRKPFPLTSTG---KIRRDEVRREVMS 449
L CRE L GFK P R+ V+ + FP+T + KI++ +R +
Sbjct: 482 ------PDEAGLMAACREA-LAGFKVPARVQVV--EAFPVTESANGAKIQKHRLREMAQA 532
Query: 450 HL 451
L
Sbjct: 533 RL 534
|
Length = 540 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 9e-21
Identities = 97/395 (24%), Positives = 173/395 (43%), Gaps = 55/395 (13%)
Query: 64 PEGAVIICFTSGTTGSPKGV-------VISHSALIVQSLAKIAIVGYGEDDVYLHTAPLC 116
P GAV++ ++SGTTG PKG+ + + ++A+ A E D+Y +AP+
Sbjct: 148 PCGAVML-YSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIAR-AFYDISESDIYYSSAPIY 205
Query: 117 HIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT 176
H L + +G V +F++++ L VE++ +T VP + L L +T
Sbjct: 206 HAAPLRWCSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRT 265
Query: 177 WKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 236
S++ +++ P ++ K A + + Y TE MT D
Sbjct: 266 RYDVSSLRAVIHAAAPCPVDV-KHAMIDWLGPIVYEYYSSTEAHG----MTFID------ 314
Query: 237 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLR 291
+P+ + P V G+ +L +C D + +G + + R
Sbjct: 315 ----------SPDWLAHPGSV--GRSVLG-DLHICDDDGNELPAGRIGTVYFERDRLPFR 361
Query: 292 YWD--QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 349
Y + + A W GD+GS+D+ G ++L R++ I SGG N+YP+E E L
Sbjct: 362 YLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENAL 421
Query: 350 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHC 409
HP + + V+G+ + + E V A ++L E + S+ L+ E++ +
Sbjct: 422 TMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDE------------LARELI-DYT 468
Query: 410 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
R + + +KAPR V + P T TGK+ + +R
Sbjct: 469 RSR-IAHYKAPR-SVEFVDELPRTPTGKLVKGLLR 501
|
Length = 501 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 3e-20
Identities = 93/389 (23%), Positives = 155/389 (39%), Gaps = 39/389 (10%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
AP+ + +TSG+TG PKG H AL+ + A DV L +
Sbjct: 1716 APQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVW 1775
Query: 123 SAMAMLMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKG 179
L+ GA V P + ++ +E+ VT+L VP++ L L+++ + +
Sbjct: 1776 ELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSM---LQQLLQMDEQVEH 1832
Query: 180 RDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
S+++++ GG L E ++ P L + YG TET+ +T T LE +
Sbjct: 1833 PLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSV 1892
Query: 240 P--QAFGN----VTPNSVH-QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRY 292
P Q N + S++ P GV EL + G L RG
Sbjct: 1893 PIGQPIANLSTYILDASLNPVPIGVA-------GELYLGGVG-------LARGYLNRPAL 1938
Query: 293 W-DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 351
++F+A P + G TGD+ G + +GR + ++K G + E+EA L +
Sbjct: 1939 TAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLRE 1998
Query: 352 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 411
G+ VV+ A ++V V + + Q + +L+ H +
Sbjct: 1999 QGGVREAVVIAQDGANGKQLVAYVVPTDPG--LVDDDEAQVA-------LRAILKNHLKA 2049
Query: 412 KNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
L + P V + PLT GK+ R
Sbjct: 2050 S-LPEYMVPAHLVFLAR-MPLTPNGKLDR 2076
|
Length = 3956 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 5e-20
Identities = 93/383 (24%), Positives = 148/383 (38%), Gaps = 61/383 (15%)
Query: 75 GTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS--AMAMLMVGA 132
G+TG+PK + +H+ + I + YL P H LSS A+ + G
Sbjct: 192 GSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGG 251
Query: 133 CHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK--KILNGG 190
C V P +E+H VT VP A + ++ K R + K+L G
Sbjct: 252 CVVLAPDPSPTDCFPLIERHKVTVTALVPP-----AVALWMQAASKSRADLSSLKLLQVG 306
Query: 191 GGLPSELMKEATNSFPKA---KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 247
G S A P +L +GM E + T L+ P ++
Sbjct: 307 GAKFSA---AAARRVPAVFGCQLQQVFGMAEGLVNYT-------RLDDPAEI-------- 348
Query: 248 PNSVHQPQGVCVGKP-APHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQFLAKPS 301
+ QG +P +P E++V D G +LTRG + Y+ +
Sbjct: 349 ---IFTTQG----RPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAA 401
Query: 302 VSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361
E + TGD+ + G + +VGR +I GGE + EE+E +LL HP + +V
Sbjct: 402 AFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALV 461
Query: 362 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR 421
+ + L E A + +R+ L + LR+ RE+ L +K P
Sbjct: 462 SMPDELLGEKSCAFIVVRDP-----------------ALKAAQLRRFLRERGLAEYKLPD 504
Query: 422 LFVLWRKPFPLTSTGKIRRDEVR 444
PLT+ GK+ + +R
Sbjct: 505 RVEFVDS-LPLTAVGKVDKKALR 526
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 7e-20
Identities = 96/381 (25%), Positives = 157/381 (41%), Gaps = 50/381 (13%)
Query: 72 FTSGTTGSPKGVVISHSALIVQS-LAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLM- 129
++SG+TG PKGVV +HS + L +G EDDV A L GL +A+ M
Sbjct: 168 YSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMS 227
Query: 130 VGACHVFIPKFESKSAL-EAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILN 188
VGA V + + + A+ + + +H T VP + A + + + + ++ +
Sbjct: 228 VGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPA--EDQVRLRLCTS 285
Query: 189 GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 248
G LP+E+ + F ++ G TE + F + P
Sbjct: 286 AGEALPAEVGQRWQARF-GVDIVDGIGSTE--------------------MLHIFLSNLP 324
Query: 249 NSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAKPSVS 303
V GKP P L++ DG V G +L G YW+
Sbjct: 325 GDVRYGTS---GKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF 381
Query: 304 TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 363
GE W +GD +D G+ GR + +K G V P E+E+ L+QHP ++ VVG+
Sbjct: 382 QGE-WTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGV 440
Query: 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLF 423
+ A + LR L++H +++ L +K PR +
Sbjct: 441 EDEDGLIKPKAFIVLRPGQDIDT-------------ALETELKEHVKDR-LAPYKYPR-W 485
Query: 424 VLWRKPFPLTSTGKIRRDEVR 444
+++ P T+TGKI+R ++R
Sbjct: 486 IVFVDDLPKTATGKIQRFKLR 506
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 9e-20
Identities = 96/417 (23%), Positives = 148/417 (35%), Gaps = 65/417 (15%)
Query: 42 MLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV 101
L L GYS + P T A +I +TSG+TG PKGV + H AL
Sbjct: 3216 TLDRLDLNGYSENN-PSTRVMGENLAYVI-YTSGSTGKPKGVGVRHGALANHLCWIAEAY 3273
Query: 102 GYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK--FESKSALEAVEQHCVTSLIT 159
+D L G + L+ G C V ++ + +A+ H ++
Sbjct: 3274 ELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACF 3333
Query: 160 VPAIMADLATLIRVKKTWKGRD--SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217
PA + A + G D S+ + GG +P ++ L + YG T
Sbjct: 3334 PPAYLQQFA------EDAGGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPT 3387
Query: 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH 277
E TL G ++V + +G+P + V DG +
Sbjct: 3388 EAV--------VTVTLWKCGG----------DAVCEAPYAPIGRPVAGRSIYVL-DGQLN 3428
Query: 278 ------VGRILTRGAHVMLRYW-------DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVW 324
G + G + Y ++F+A P +G TGD+ G +
Sbjct: 3429 PVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIE 3488
Query: 325 LVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQW 384
+GR + ++K G + E+EA LLQHP + VV+ A ++V V W
Sbjct: 3489 YLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQGDW 3548
Query: 385 SESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAP-RLFVLWRKPFPLTSTGKIRR 440
E LR H +L + P +L VL PL GK+ R
Sbjct: 3549 -----------------RETLRDHLA-ASLPDYMVPAQLLVLAA--MPLGPNGKVDR 3585
|
Length = 3956 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 1e-19
Identities = 79/315 (25%), Positives = 132/315 (41%), Gaps = 37/315 (11%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIA--IVGYGEDDVYLHTAPLCHIGGLSSAMAM 127
+C+TSGTTG+PKG + SH + ++ + +G D L P+ H+ +
Sbjct: 181 LCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSA 240
Query: 128 LMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 186
+ GA V P + KS E +E VT VP + L L +++ ++++
Sbjct: 241 PLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVW--LGLLNHMREAGLRFSTLRRT 298
Query: 187 LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 246
+ GG P +++ + + ++I A+GMTE S T L + P
Sbjct: 299 VIGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLD-------- 349
Query: 247 TPNSVHQPQGVCV-----------GKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 295
+ + QG + G+ P DG + G + RG V+ RY+
Sbjct: 350 EQRKLLEKQGRVIYGVDMKIVGDDGRELPW-------DGKAF-GDLQVRGPWVIDRYFRG 401
Query: 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 355
A P V W TGD+ +ID G + + R IKSGGE + ++E V + HP +
Sbjct: 402 -DASPLVDG---WFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAV 457
Query: 356 IGIVVVGIANARLTE 370
+ A+ + E
Sbjct: 458 AEAACIACAHPKWDE 472
|
Length = 539 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 91.0 bits (225), Expect = 1e-19
Identities = 93/388 (23%), Positives = 144/388 (37%), Gaps = 44/388 (11%)
Query: 68 VIICFTSGTTGSPKGVVISHSALIVQSLAKIAI--VGYGEDDVYLHTAPLCHIGGLSSAM 125
+ +T+GTTG PKGVV SH AL++ SLA + E DV L P+ H+
Sbjct: 156 CGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPY 215
Query: 126 AMLMVGACHVFIPKFESKSAL-EAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 184
A +VGA V ++L E + VT VP + LA +S
Sbjct: 216 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALAD---------YLESTG 266
Query: 185 K-------ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 237
++ GG P L+ ++ YG+TETS + LE+
Sbjct: 267 HRLKTLRRLVVGGSAAPRSLIA--RFERMGVEVRQGYGLTETSP-VVVQNFVKSHLESLS 323
Query: 238 QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFL 297
+ + + V V DG + +G + +G + Y+
Sbjct: 324 EEEKLTLKAKTGLPIPLVRLRVADEE---GRPVPKDGKA-LGEVQLKGPWITGGYYGNEE 379
Query: 298 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 357
A S T + + TGDI D+ G V + R IKSGGE + ++E L+ HP +
Sbjct: 380 ATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKE 439
Query: 358 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF 417
VV I + + E +A V R +EL +H +
Sbjct: 440 AAVVAIPHPKWQERPLAVVVPRGE----------KPTPEELN-------EHLLKA-GFAK 481
Query: 418 KAPRLFVLWRKPFPLTSTGKIRRDEVRR 445
++ + P TS GK + +R
Sbjct: 482 WQLPDAYVFAEEIPRTSAGKFLKRALRE 509
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 2e-19
Identities = 93/405 (22%), Positives = 159/405 (39%), Gaps = 99/405 (24%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA----- 124
+ +TSG+TG PKGVVI+H + A+ AI+G D L S A
Sbjct: 104 VIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDRVLQ--------FASIAFDVSI 155
Query: 125 ---MAMLMVGACHVFIPKFESKSA--LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKG 179
L+ G + IP E + E + + VT P+++A
Sbjct: 156 LEIFTTLLAGGT-LVIPPEELRLEDLAEFLNRLRVTVAHLTPSLLA----------LLDP 204
Query: 180 RD--SVKKILNGGGGLPSELMKEATNSF--PKAKLISAYGMTETSSSLTFMTLYDPTLET 235
D S++ ++ GG E +A +L++ YG TE + + T + P
Sbjct: 205 EDVPSLRTLILGG-----EACPQALVDRWSKPRRLLNTYGPTEATVTAT-ASRLTPG--- 255
Query: 236 PGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH------VGRILTRGAHVM 289
+P V +G+P P+ V VG + G V
Sbjct: 256 -----------------KP--VNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVA 296
Query: 290 LRYWDQFLAKPSVSTGEV------WLD--------TGDIGSIDDGGNVWLVGRRNGRIKS 335
Y L +P T E WL+ TGD+ + G++ +GR++ ++K
Sbjct: 297 RGY----LNRP-ELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKI 351
Query: 336 GGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKN 395
G+ + E+EAVL PG++ VV + + + +VA + + D ++
Sbjct: 352 RGQRIELGEIEAVLRALPGVVVAAVVLLLDDPGGKQLVAFLAV-----------DGAAGG 400
Query: 396 KELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
+ + +LR RE+ L + P ++V + PLT++GK+ R
Sbjct: 401 EPADVDIALLRSALRER-LPSYMVPSVYVPLDE-LPLTASGKVDR 443
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 3e-19
Identities = 85/338 (25%), Positives = 135/338 (39%), Gaps = 42/338 (12%)
Query: 45 ADILKGYSLRSLPFTHSWAPEGA----------VIICFTSGTTGSPKGVVISHSALIVQS 94
A +L+ +R L A + ++ TSG+TGSPK V I+H L +
Sbjct: 122 APVLEEKGIRVLTVADLLAADPIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANA 181
Query: 95 LAKIAIVGYG-EDDVYLHTAPLCH----IGGLSSAMAMLMVGACHVFIP--KFESKSAL- 146
A + E DV + PL H +G L+ M GA V + F L
Sbjct: 182 EAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMY---FGAELVKVTPMDFLRDPLLW 238
Query: 147 -EAVEQHCVTSLITV-PAIM-ADLATLIRVKKTWKGRD--SVKKILNGGGGLPSELMKE- 200
E + ++ T +T P A LA +R + D S++ LNG + +++
Sbjct: 239 AELISKYRGT--MTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDL 296
Query: 201 ----ATNSFPKAKLISAYGMTETSSSLTFMTLYDP-TLETP-GQLPQAFGNVTPNSV-HQ 253
A ++ AYGM E + +++F ++ L A P + +
Sbjct: 297 LDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNT 356
Query: 254 PQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVW 308
+ +G P P +E++V + VG I RG V Y P+ W
Sbjct: 357 RRLATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDADG-W 415
Query: 309 LDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE 346
LDTGD+G + + G V + GR I G N+YP ++E
Sbjct: 416 LDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIE 453
|
Length = 545 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 3e-19
Identities = 54/253 (21%), Positives = 94/253 (37%), Gaps = 36/253 (14%)
Query: 213 AYGMTETSSSLTFMTLYD-PTLETPGQLPQAFGNVTPNSVHQPQG---VCVGKPAPHVEL 268
YG+ E + +++ P + + A G + V G+P P E+
Sbjct: 307 CYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEV 366
Query: 269 KV--------CSDGSSHVGRILTRGAHVMLRYWDQ------FLAKPSVSTGEVWLDTGDI 314
++ DG VG I RG V YW++ + WL TGD+
Sbjct: 367 RIVDPETRRPLPDG--EVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDL 424
Query: 315 GSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII--GIVVVGIANARLTEMV 372
G + DG +++ GR I G N YP+++EA + + + G + E +
Sbjct: 425 GFLHDG-ELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDGEERL 483
Query: 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPL 432
V +R ++ + + + V R+H G + ++ P
Sbjct: 484 VVVAEVRRRGLPAD---LAALAEA---IRAAVAREH-------GVAPADVVLVRPGTLPK 530
Query: 433 TSTGKIRRDEVRR 445
TS+GKI+R R
Sbjct: 531 TSSGKIQRRACRE 543
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 90.0 bits (223), Expect = 6e-19
Identities = 85/388 (21%), Positives = 136/388 (35%), Gaps = 58/388 (14%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS 123
PE + +TSG+TG PKGV I HSAL G G D L +
Sbjct: 3195 PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEE 3254
Query: 124 AMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 183
LM GA V + + VE + + A + L + + + +
Sbjct: 3255 LFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTS-L 3313
Query: 184 KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 243
K+I+ GG LP++L ++ F L + YG TE + ++T + +P
Sbjct: 3314 KRIVCGGEALPADLQQQV---FAGLPLYNLYGPTEATITVTHWQCVEE---GKDAVP--- 3364
Query: 244 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----------GRILTRGAHVMLRY 292
+G+P + + V G L RG H
Sbjct: 3365 ---------------IGRPIANRACYILDGSLEPVPVGALGELYLGGEGLARGYHNRPGL 3409
Query: 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
+ GE TGD+ G + +GR + ++K G + E+EA LL+H
Sbjct: 3410 TAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEH 3469
Query: 353 PGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK 412
P + VV+ + +L VV + + E L+ H +
Sbjct: 3470 PWVREAVVLAVDGRQLVAYVVP--------EDEAGDL------------REALKAHLKAS 3509
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
L + P + + PLT GK+ R
Sbjct: 3510 -LPEYMVPAHLLFLER-MPLTPNGKLDR 3535
|
Length = 5163 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 7e-19
Identities = 94/385 (24%), Positives = 149/385 (38%), Gaps = 36/385 (9%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALI--VQSLAKIAIVGYGEDDVYLHTAPLCHIGG 120
P+ + +TSG+TG PKGV ISH AL V +A + DD L + G
Sbjct: 654 DPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIA--ERLQLAADDSMLMVSTFAFDLG 711
Query: 121 LSSAMAMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 177
++ L GA +P ++++ + VT L VP+ + L RV
Sbjct: 712 VTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRV---- 767
Query: 178 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 237
+ ++ GG L +L+ P A+LI+ YG TET+ ++ L D +
Sbjct: 768 ALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGN 827
Query: 238 Q-LPQAFGNVTPNSV-HQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 295
+ Q N+ + H V VG EL + G + R A R
Sbjct: 828 VPIGQPLANLGLYILDHYLNPVPVGVVG---ELYIGGAGLAR--GYHRRPALTAER---- 878
Query: 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 355
F+ P + G TGD+ G + +GR + ++K G + E+EA LL PG+
Sbjct: 879 FVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGV 938
Query: 356 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 415
VV+ ++V V + E + + L+ R+ L
Sbjct: 939 REAVVLAQPGDAGLQLVAYLVP------------AAVADGAEHQATRDELKAQLRQ-VLP 985
Query: 416 GFKAPRLFVLWRKPFPLTSTGKIRR 440
+ P +L PLT GK+ R
Sbjct: 986 DYMVPAHLLLLDS-LPLTPNGKLDR 1009
|
Length = 3956 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 9e-19
Identities = 88/392 (22%), Positives = 141/392 (35%), Gaps = 56/392 (14%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAM-AMLMV 130
+TSGTTG PK ++SH + + DDV PL H L+ + L
Sbjct: 88 YTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTVGWSSALAA 147
Query: 131 GACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGG 190
GA KF + V ++ T+ V + L L + +K ++KI+ G
Sbjct: 148 GASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYL--LNQPEKPDDRDHPLRKII--G 203
Query: 191 GGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA------FG 244
GL ++ E F +++ YG TE + G+LP A +
Sbjct: 204 NGLRPDIWDEFKERFGVPRIVEFYGSTEGNVGFIN---LFNKPGAVGRLPPAAIAVVKYD 260
Query: 245 NVTPNSVHQPQGVCVGKPAPHV-ELKVCSDGSSHVGRILTRGAHVMLR---YWD-----Q 295
T + G C+ P V L +G I R Y D +
Sbjct: 261 VETEEPIRDANGFCIKVPPGEVGLL---------LGEITDRN-----PFDGYTDDEATEK 306
Query: 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 355
+ + G+ + +TGD+ D G + V R + GENV EVE VL +HPG+
Sbjct: 307 KILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGV 366
Query: 356 IGIVVVGIANARLT-EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 414
V G+ +A + L + H ++ L
Sbjct: 367 EEANVYGVEVPGTEGRAGMAALTLAPGAA----------------FDPQAFAAHL-DEQL 409
Query: 415 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446
+ P LF+ + T T K ++ ++R+E
Sbjct: 410 PAYARP-LFLRVQAAMETTGTFKYQKTDLRKE 440
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 3e-18
Identities = 89/398 (22%), Positives = 140/398 (35%), Gaps = 58/398 (14%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
P+ + +TSG+TG PKGV +SH +L+ A DD L G
Sbjct: 4692 HPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFSFDGSHE 4751
Query: 123 SAMAMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKG 179
L+ GA V I ++ + + +H VT L+ P + LA
Sbjct: 4752 GLYHPLINGAS-VVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDGEPP- 4809
Query: 180 RDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
S++ GG + A + L + YG TET+ ++ D +
Sbjct: 4810 --SLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYM 4867
Query: 240 PQAFGNVTPN-SVH------QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRY 292
P G N S + P V V EL + +G + RG Y
Sbjct: 4868 P--IGTPLGNRSGYVLDGQLNPLPVGVAG-----ELYLGGEG-------VARG------Y 4907
Query: 293 W-------DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEV 345
++F+ P + G TGD+ G + +GR + ++K G + E+
Sbjct: 4908 LERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEI 4967
Query: 346 EAVLLQHPGIIGIVVV---GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSS 402
EA L +HP + VV+ G +L VV +++
Sbjct: 4968 EARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPALADADEAQAELRDE---------- 5017
Query: 403 EVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
L+ RE L + P V + PLT GK+ R
Sbjct: 5018 --LKAALRE-RLPEYMVPAHLVFLAR-MPLTPNGKLDR 5051
|
Length = 5163 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 1e-17
Identities = 103/401 (25%), Positives = 170/401 (42%), Gaps = 75/401 (18%)
Query: 70 ICFTSGTTGSPKGVVISHSAL-IVQSLAKIAIVGYGEDDVYLHTAPLCHI-GGLSSAMAM 127
I FTSGTTG PK SHS+L + + + D+ + + I + S +
Sbjct: 179 IYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWSLFSP 238
Query: 128 LMVGACHVFI---PKFESKSALEAVEQHCVTSLITVPAI--MADLATLIRVKKTWKGRDS 182
+ GAC VF+ P+F+ K L+ + ++ +T+ + P + M L K S
Sbjct: 239 WIQGAC-VFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDLTSYK-----FKS 292
Query: 183 VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 242
++ + GG L E++++ L YG TET L ++ PG +
Sbjct: 293 LRHCVTGGEPLNPEVLEQWKAQ-TGLDLYEGYGQTETG--LICANFKGMKIK-PGSM--- 345
Query: 243 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRG--AHVMLR--------Y 292
GK +P ++++ D G +L G + +R
Sbjct: 346 -----------------GKASPPYDVQIIDDN----GNVLPPGTEGDIGIRVKPTRPFCL 384
Query: 293 WDQFLAKP----SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV 348
+ ++ P + G+ ++ TGD G +D+ G W VGR + I S G + P EVE+
Sbjct: 385 FSCYVDNPEKTAATIRGDFYI-TGDRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESA 443
Query: 349 LLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQH 408
L++HP ++ VV + E+V A V L S + E L L++H
Sbjct: 444 LIEHPAVVESAVVSSPDPIRGEVVKAFVVL---------APQFLSHDPEQLTKE--LQEH 492
Query: 409 CREKNLTG-FKAPRL--FVLWRKPFPLTSTGKIRRDEVRRE 446
K++T +K PR FV P T TGKI+R+E+R +
Sbjct: 493 V--KSVTAPYKYPRKVEFVQ---ELPKTITGKIKRNELRDK 528
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 2e-17
Identities = 97/409 (23%), Positives = 164/409 (40%), Gaps = 64/409 (15%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYG--EDDVYLHTAPLCHIGGLSSA 124
A IC+++GTTG+PKGVV SH +L +QSL+ + +L P+ H+
Sbjct: 183 AAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVP 242
Query: 125 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLIT----VPAIMADLATLIRVKKTWKGR 180
+A M G VF S L + T++ VP + L ++ K R
Sbjct: 243 LAAFMSGTPLVFPGPDLSAPTLAKI---IATAMPRVAHGVPTLWIQL--MVHYLKNPPER 297
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
S+++I GG +P L+K + ++ +GMTETS + T + P
Sbjct: 298 MSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTETS-----------PVGTVARPP 345
Query: 241 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG---SSH---VGRILTRGAHVMLRYW- 293
+ QG PA +E ++ +DG S G I RG V Y+
Sbjct: 346 SGVSGEARWAYRVSQGRF---PAS-LEYRIVNDGQVMESTDRNEGEIQVRGNWVTASYYH 401
Query: 294 ---------------DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGE 338
+ T + WL TGD+GS+ G + + R I+SGGE
Sbjct: 402 SPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGE 461
Query: 339 NVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKEL 398
+Y ++E ++ P ++ V+G + + E +A L + +
Sbjct: 462 WIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRE----------- 510
Query: 399 LLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREV 447
++E LR R++ L + P + + TS GK + ++R+ +
Sbjct: 511 --TAERLRDQLRDR-LPNWMLPEYWT-FVDEIDKTSVGKFDKKDLRQHL 555
|
Length = 576 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-17
Identities = 91/390 (23%), Positives = 141/390 (36%), Gaps = 72/390 (18%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDV--YLHTAPLCHIGGLS--SAM 125
+ +TSG+TG PKGV I H +L + A + +++ L +C LS
Sbjct: 110 VIYTSGSTGRPKGVAIEHRNAA--ALLQWAAAVFSAEELAGVLAATSICF--DLSVFEIF 165
Query: 126 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLI-TVPAIMADLATLIRVKKTWKGRDSVK 184
L G V ++ AL + +LI TVP+ +L + SV+
Sbjct: 166 VPLSTGGRVVLA---DNALALPDLPAKAEVTLINTVPSAARELLRHDALPS------SVR 216
Query: 185 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 244
+ G LP EL++ ++ + YG +E ++ T+ + TP
Sbjct: 217 TVNLAGEPLPQELVQRLYALPQVERVYNLYGPSEDTTYSTYAEVEPGASRTPS------- 269
Query: 245 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH------VGRILTRGAHVMLRYWD---- 294
+G+P + V D G + GA V Y
Sbjct: 270 --------------IGRPLAGTQAYV-LDAHLQPVPVGVPGELYIGGAGVARGYLGRPEL 314
Query: 295 ---QFLAKP-SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 350
+FL P + S GE TGD+ G + +GR + ++K G + E+EA L
Sbjct: 315 TAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEIEAALR 374
Query: 351 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCR 410
PG+ VVV I +A +VA + + + E LR
Sbjct: 375 SIPGVAEAVVVAIGDAAGDRQLVAYIVADPG---AAIDI-------------EDLRARLA 418
Query: 411 EKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
L + P FV PLT GKI R
Sbjct: 419 -TRLPAYMVPSRFV-RLDALPLTPNGKIDR 446
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 106/393 (26%), Positives = 152/393 (38%), Gaps = 102/393 (25%)
Query: 73 TSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGA 132
TSGTTG+PKG +++ +AL + A +G G +L P HI GL + ++ G+
Sbjct: 43 TSGTTGTPKGAMLTAAALTASADATHDRLG-GPGQ-WLLALPAHHIAGLQVLVRSVIAGS 100
Query: 133 CHV-------F-IPKFESK-SALEAVEQHCVTSLITV--------PAIMADLATLIRVKK 175
V F + L ++ TSL+ + PA A LA L
Sbjct: 101 EPVELDVSAGFDPTALPRAVAELGGGRRY--TSLVPMQLAKALDDPAATAALAEL----- 153
Query: 176 TWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLET 235
D+V L GGG P+ ++ A + ++ YGM+ETS
Sbjct: 154 -----DAV---LVGGGPAPAPVLDAAAAA--GINVVRTYGMSETS--------------- 188
Query: 236 PGQLPQAFGNVTPNSVHQPQGVCV--GKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYW 293
G CV G P V ++V DG RI G + Y
Sbjct: 189 --------------------GGCVYDGVPLDGVRVRV-EDG-----RIALGGPTLAKGYR 222
Query: 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 353
+ P G W T D+G++DDG + ++GR + I +GG V P+ VEA L HP
Sbjct: 223 NPVDPDPFAEPG--WFRTDDLGALDDG-VLTVLGRADDAISTGGLTVLPQVVEAALATHP 279
Query: 354 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKN 413
+ V G+ + RL + VVA V L E LR H +
Sbjct: 280 AVADCAVFGLPDDRLGQRVVAAVVGDGGP-------------APTL---EALRAHV-ART 322
Query: 414 LTGFKAPR-LFVLWRKPFPLTSTGKIRRDEVRR 445
L APR L V+ P GK+ R + R
Sbjct: 323 LDRTAAPRELHVV--DELPRRGIGKVDRRALVR 353
|
Length = 358 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 3e-17
Identities = 98/390 (25%), Positives = 158/390 (40%), Gaps = 57/390 (14%)
Query: 63 APEGAVIICFTSGTTGSPKGV-----VISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH 117
A G +++ TSGTTG PKGV + S + V L + + V P+ H
Sbjct: 173 AAPGRIVL-LTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISV---AMPMFH 228
Query: 118 IGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 177
GL M + +G + F++++AL H + VP ++A + L +
Sbjct: 229 GLGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRAR 288
Query: 178 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 237
++ +++ G L L + +++ L + YG TE L TP
Sbjct: 289 NPLPQLRVVMSSGDRLDPTLGQRFMDTYGDI-LYNGYGSTEVGIG---------ALATPA 338
Query: 238 QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFL 297
L A P +V +P C P ++ G GRI G RY D
Sbjct: 339 DLRDA-----PETVGKPVAGC---PVRILDRNNRPVGPRVTGRIFVGGELAGTRYTD--- 387
Query: 298 AKPSVSTGEVWLD----TGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 353
G+ +D TGD+G +D+ G +++VGR + I SGGENVYP VE L HP
Sbjct: 388 -----GGGKAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHP 442
Query: 354 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKN 413
+ V+G+ + R + A V L + + LR + +++
Sbjct: 443 AVADNAVIGVPDERFGHRLAAFVVLH-------PGSG---------VDAAQLRDYLKDR- 485
Query: 414 LTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 443
++ F+ PR + P TGK+ R E+
Sbjct: 486 VSRFEQPRDINI-VSSIPRNPTGKVLRKEL 514
|
Length = 516 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 4e-17
Identities = 80/324 (24%), Positives = 122/324 (37%), Gaps = 35/324 (10%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
A E + +TSG+TG PKGV +SH AL+ A D L G
Sbjct: 2144 AGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHE 2203
Query: 123 SAMAMLMVGACHVFIPKFESKSALE---AVEQHCVTSLITVPAIMADLATLIRVKKTWKG 179
L+ GA V I E + +E+H VT L P + LA
Sbjct: 2204 QWFHPLLNGA-RVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGR--- 2259
Query: 180 RDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG-Q 238
+V+ GG +P+ ++ A + L + YG TE + P L Q
Sbjct: 2260 PPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEA--------VVTPLLWKCRPQ 2311
Query: 239 LPQAFGNVTPNSVHQPQGVCVGKPAPHV---ELKVCSDGSSHVGRILTRGAHVMLRYWDQ 295
P V P G +G ++ +L + + G G + G + Y ++
Sbjct: 2312 DPCGAAYV-------PIGRALGNRRAYILDADLNLLAPGM--AGELYLGGEGLARGYLNR 2362
Query: 296 -------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV 348
F+ P ++GE TGD+ G V +GR + ++K G + E+EA
Sbjct: 2363 PGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEAR 2422
Query: 349 LLQHPGIIGIVVVGIANARLTEMV 372
L HP + VVV A ++V
Sbjct: 2423 LQAHPAVREAVVVAQDGASGKQLV 2446
|
Length = 5163 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 4e-17
Identities = 86/344 (25%), Positives = 137/344 (39%), Gaps = 47/344 (13%)
Query: 48 LKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDD 107
L+GYS + P T PE + +TSG+TG PKG H AL + G G D
Sbjct: 640 LEGYSEEN-PGTEL-NPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGD 697
Query: 108 VYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVE---QHCVTSLITVPAIM 164
L P + LM GA V + + + VE + V +L VP+++
Sbjct: 698 TVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSML 757
Query: 165 ADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLT 224
V S+++I+ G LP++ ++ P+A L + YG TE + +T
Sbjct: 758 QAFLQDEDVASC----TSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVT 813
Query: 225 FMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHV-------ELKVCSDGSSH 277
T + E +P +G+P ++ L+ G
Sbjct: 814 HWTCVE---EGGDSVP------------------IGRPIANLACYILDANLEPVPVGVLG 852
Query: 278 ----VGRILTRGAH---VMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRN 330
GR L RG H + ++F+ P V+ GE TGD+ G + GR +
Sbjct: 853 ELYLAGRGLARGYHGRPGLTA--ERFVPSPFVA-GERMYRTGDLARYRADGVIEYAGRID 909
Query: 331 GRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVA 374
++K G + E+EA LL+HP + V+ + +L VV
Sbjct: 910 HQVKLRGLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGYVVL 953
|
Length = 5163 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 8e-17
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 308 WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANAR 367
W+ GD+G +D+ G ++L R++ I SGG N+YP+E+E +L+ HP + + V G+ +
Sbjct: 370 WVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEE 429
Query: 368 LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWR 427
+ E V A V+ D + L + L R L +K PR
Sbjct: 430 MGERVKAVVQPA----------DGADAGDAL---AAELIAWLRG-RLAHYKCPRSIDF-E 474
Query: 428 KPFPLTSTGKI 438
P T TGK+
Sbjct: 475 DELPRTPTGKL 485
|
Length = 502 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 9e-17
Identities = 84/346 (24%), Positives = 132/346 (38%), Gaps = 51/346 (14%)
Query: 52 SLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLH 111
L + ++ P+ I F+SG+ G PKGV++SH ++ + DDV L
Sbjct: 769 RLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILS 828
Query: 112 TAPLCHIGGLSSAMAM-LMVGACHVFIPK-FESKSALEAVEQHCVTSLITVPAIMADLAT 169
+ P H GL+ + + L+ G V+ P ++ + V +H T L+ P L
Sbjct: 829 SLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTF---LRL 885
Query: 170 LIRVKKTWKGR-DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTL 228
+R KK S++ ++ G L E+ F +++ YG TETS +
Sbjct: 886 YLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGI-RILEGYGATETSPVASVNL- 943
Query: 229 YDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKV--------CSDGSSHVGR 280
P + Q +G VG P P V +++ G G
Sbjct: 944 --PDVLAADFKRQTG---------SKEG-SVGMPLPGVAVRIVDPETFEELPPGED--GL 989
Query: 281 ILTRGAHVMLRYWDQFLAKPSVSTGEV--------WLDTGDIGSIDDGGNVWLVGRRNGR 332
IL G VM Y T EV W TGD G +D+ G + + R +
Sbjct: 990 ILIGGPQVMKGYLGD-----PEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRF 1044
Query: 333 IKSGGENVYP-----EEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373
K GGE V P EE+ L + V + + + E +V
Sbjct: 1045 AKIGGEMV-PLGAVEEELAKALGGEEVV--FAVTAVPDEKKGEKLV 1087
|
Length = 1146 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-16
Identities = 95/383 (24%), Positives = 156/383 (40%), Gaps = 60/383 (15%)
Query: 75 GTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS--AMAMLMVGA 132
G+TG+PK + +H+ + I G+ YL P H +SS A+ + + G
Sbjct: 192 GSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGG 251
Query: 133 CHVFIPKFESKSALEAVEQHCV--TSLITVPAIMADLATLIRVKKTWKGRD---SVKKIL 187
V P + +E+H V T+L+ PA+ L + R S+K +
Sbjct: 252 TVVLAPDPSATLCFPLIEKHQVNVTALVP-PAVSLWLQAI----AEGGSRAQLASLKLLQ 306
Query: 188 NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 247
GG L L + +L +GM E + T L D
Sbjct: 307 VGGARLSETLARRIPAEL-GCQLQQVFGMAEGLVNYT--RLDDS---------------- 347
Query: 248 PNSVHQPQGVCVGKP-APHVELKVC-SDGS----SHVGRILTRGAHVMLRYWDQFLAKPS 301
+ QG +P +P E+ V +DG+ VGR++TRG + Y+ S
Sbjct: 348 DERIFTTQG----RPMSPDDEVWVADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNAS 403
Query: 302 VSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361
+ +GD+ SID G + +VGR +I GGE + EE+E +LL+HP +I +V
Sbjct: 404 AFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALV 463
Query: 362 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR 421
+ + + E A + ++E L + LR+ RE+ + FK P
Sbjct: 464 SMEDELMGEKSCAFLVVKEP------------------LKAVQLRRFLREQGIAEFKLPD 505
Query: 422 LFVLWRKPFPLTSTGKIRRDEVR 444
PLT+ GK+ + ++R
Sbjct: 506 RVECV-DSLPLTAVGKVDKKQLR 527
|
Length = 536 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-15
Identities = 82/333 (24%), Positives = 129/333 (38%), Gaps = 71/333 (21%)
Query: 39 KRDMLTADILKGY--SLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSAL---IVQ 93
+ + AD +KG L + + P+ +I FTSG+ G+PKGVV+SH L Q
Sbjct: 765 RAQIGLADKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQ 824
Query: 94 SLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSAL------E 147
A+I + +D + P+ H GL+ + + ++ + F S L E
Sbjct: 825 VAARID---FSPEDKVFNALPVFHSFGLTGGLVLPLLSG----VKVFLYPSPLHYRIIPE 877
Query: 148 AVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SVKKILNGGGGLPSELMKEATNSF 205
+ T L + A + D S++ + G +E +KE T
Sbjct: 878 LIYDTNATILFGTDTFLNGYA------RYAHPYDFRSLRYVFAG-----AEKVKEETRQT 926
Query: 206 PKAK----LISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGK 261
K ++ YG+TET+ + T P G VG+
Sbjct: 927 WMEKFGIRILEGYGVTETAPVIALNT---PMHNKAGT--------------------VGR 963
Query: 262 PAPHVELKV-----CSDGSSHVGRILTRGAHVMLRYWDQFLAKPSV--STGEVWLDTGDI 314
P +E ++ +G GR+ RG +VML Y P V + W DTGDI
Sbjct: 964 LLPGIEYRLEPVPGIDEG----GRLFVRGPNVMLGYLR--AENPGVLEPPADGWYDTGDI 1017
Query: 315 GSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEA 347
+ID+ G + + GR K GE + VE
Sbjct: 1018 VTIDEEGFITIKGRAKRFAKIAGEMISLAAVEE 1050
|
Length = 1140 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-15
Identities = 74/314 (23%), Positives = 124/314 (39%), Gaps = 22/314 (7%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMA-MLMV 130
FTSGTTG+PK V SH L A G DDV + PL H + + A +
Sbjct: 157 FTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVAS 216
Query: 131 GACHVFIPKFESKSALEAVEQHCVTSLITV-PAIMADLATLIRVKKTWKGRDSVKKILNG 189
GA KF + L+ V ++ T V + LAT + D+ +
Sbjct: 217 GAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILAT------PERPDDADNPLRVA 270
Query: 190 GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPN 249
G S + ++ YG +E + + PG P + G P
Sbjct: 271 FGNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVV---------REPGTPPGSIGRGAPG 321
Query: 250 -SVHQPQGVCVGKPAPHVELKVCSDGSSHVGRIL-TRGAHVMLRYW-DQFLAKPSVSTGE 306
+++ P+ + A + +G ++ T GA Y+ + + G
Sbjct: 322 VAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGM 381
Query: 307 VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 366
W +GD+ D G ++ GR ++ GEN+ +E +LL+HP I + V + +
Sbjct: 382 YW--SGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDE 439
Query: 367 RLTEMVVACVRLRE 380
R+ + V+A + LR+
Sbjct: 440 RVGDQVMAALVLRD 453
|
Length = 540 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 3e-15
Identities = 100/406 (24%), Positives = 167/406 (41%), Gaps = 48/406 (11%)
Query: 48 LKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDD 107
L YS LPF P+ + +TSG+TG PKGVV+SH + + A I G DD
Sbjct: 2318 LAAYSDAPLPFLS--LPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRADD 2375
Query: 108 VYLHTAPLCHIGGLSSAMAMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMA 165
LH + + L+ GA V ++ ++ + + + V+ L P+ +
Sbjct: 2376 CELHFYSINFDAASERLLVPLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGS 2435
Query: 166 DLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTF 225
LA + + V+ + GG L E ++ +F +AYG TET
Sbjct: 2436 QLAQWL---AGQGEQLPVRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTET----VV 2488
Query: 226 MTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHV---ELKVCSDGSSHVGRIL 282
M L P QL + +V P G VG ++ +L + G++ G +
Sbjct: 2489 MPLACL---APEQLEEGAASV-------PIGRVVGARVAYILDADLALVPQGAT--GELY 2536
Query: 283 TRGAHVMLRYWD-------QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKS 335
GA + Y D +F+A P + G TGD+ + G V VGR + ++K
Sbjct: 2537 VGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKI 2596
Query: 336 GGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKN 395
G + E+E+ LL+HP + VV+ + ++ V + ++
Sbjct: 2597 RGFRIELGEIESRLLEHPAVREAVVLALDTPSGKQLAGYLV------------SAVAGQD 2644
Query: 396 KELLLS-SEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
E + E L+ H +++ L + P +L PLT+ GK+ R
Sbjct: 2645 DEAQAALREALKAHLKQQ-LPDYMVPAHLILLDS-LPLTANGKLDR 2688
|
Length = 4334 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 4e-15
Identities = 78/331 (23%), Positives = 131/331 (39%), Gaps = 39/331 (11%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH----I 118
P+ ++ FTSGT+G PK V +H + + G G DDV + PL H +
Sbjct: 150 DPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVM 209
Query: 119 GGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMAD-LATLIRVKKTW 177
G + A+A GA KF + L V ++ T V ++ LAT R
Sbjct: 210 AGWAVALA---AGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDD-- 264
Query: 178 KGRDSVKKILNGGGGLPSELMKEATNSFPK---AKLISAYGMTETSSSLTFMTLYDPTLE 234
D+ +I+ G G P ++ F + ++ +G TE ++T
Sbjct: 265 --ADNPLRIVYGNEGAPGDI-----ARFARRFGCVVVDGFGSTEGGVAIT---------R 308
Query: 235 TPGQLPQAFGNVTPN-SVHQPQGVCVGKPAPHVELKVCS--DGSSHVGRIL-TRGAHVML 290
TP P A G + P ++ P G P E + +G ++ T G
Sbjct: 309 TPDTPPGALGPLPPGVAIVDPDT---GTECPPAEDADGRLLNADEAIGELVNTAGPGGFE 365
Query: 291 RYW-DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 349
Y+ D + G W +GD+ D G + GR ++ GEN+ +E +L
Sbjct: 366 GYYNDPEADAERMRGGVYW--SGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERIL 423
Query: 350 LQHPGIIGIVVVGIANARLTEMVVACVRLRE 380
L++P + V + + + + V+A + L
Sbjct: 424 LRYPDATEVAVYAVPDPVVGDQVMAALVLAP 454
|
Length = 529 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-14
Identities = 86/350 (24%), Positives = 131/350 (37%), Gaps = 89/350 (25%)
Query: 72 FTSGTTGSPKGVVISH------SALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAM 125
+TSGTTG PKGV++SH + V+ + + VG YL PL HI +
Sbjct: 157 YTSGTTGMPKGVMLSHDNITWTAKAAVKHM-DLRTVGQESVVSYL---PLSHIAAQILDI 212
Query: 126 -AMLMVGACHVFIPKFESKSAL-EAVEQHCVTSLITVP-----------AIMADLATLIR 172
+ VG C F K L + + + T+ + VP A+ A L R
Sbjct: 213 WLPISVGGCVYFAQPDALKGTLVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKR 272
Query: 173 VKKTWK-------------------------------------GRDSVKKILNGGGGLPS 195
+W G D +K G +
Sbjct: 273 KIASWAKGVGLETNLKLMGGESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISR 332
Query: 196 ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQ 255
E E S ++ YGM+ETS T PQ + ++
Sbjct: 333 ET-LEFFLSL-NIPIMELYGMSETSGPHTV------------SNPQNYRLLS-------- 370
Query: 256 GVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYW-DQFLAKPSVSTGEVWLDTGDI 314
GK P E K+ + + +G I G HV + Y + + ++ + WL +GD+
Sbjct: 371 ---CGKALPGCETKIHNPDADGIGEICIWGRHVFMGYLNMEEKTEEAIDE-DGWLHSGDL 426
Query: 315 GSIDDGGNVWLVGRRNGRIK-SGGENVYPEEVE-AVLLQHPGIIGIVVVG 362
G +DD G +++ GR I +GGENV P +E AV + P I ++VG
Sbjct: 427 GFLDDDGFLYITGRIKELIITAGGENVPPVPIEEAVKKELPIISNAMLVG 476
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 6e-14
Identities = 104/416 (25%), Positives = 166/416 (39%), Gaps = 69/416 (16%)
Query: 55 SLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAP 114
+ F H+ + I +TSG+TG+PKGV ISH L+ + +A E +L+ AP
Sbjct: 131 PVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAP 190
Query: 115 LCHIGGLS---SAMAM---LMVGACHVFIPKFES---KSALEAVEQHCVTSLITVPAIMA 165
S S M + L G + K + K E + + + ++ P+ +
Sbjct: 191 F------SFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFV- 243
Query: 166 DLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTF 225
D+ L+ + + L G LP + K FPKA + + YG TE + ++T
Sbjct: 244 DMC-LLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTS 302
Query: 226 MTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GR 280
+ + L+ +LP +G P + L + + + G
Sbjct: 303 VKITQEILDQYPRLP------------------IGFAKPDMNLFIMDEEGEPLPEGEKGE 344
Query: 281 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLD--------TGDIGSIDDGGNVWLVGRRNGR 332
I+ G V Y L P T E + TGD G+I D G ++ GR + +
Sbjct: 345 IVIVGPSVSKGY----LNNPE-KTAEAFFSHEGQPAYRTGDAGTITD-GQLFYQGRLDFQ 398
Query: 333 IKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLT-EMVVACVRLRESWQWSESNCDQ 391
IK G + E++E L Q I VVV N E ++A + E +
Sbjct: 399 IKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTK 458
Query: 392 SSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREV 447
+ K KEL +K+L + PR F+ +R PLT+ GKI R + EV
Sbjct: 459 AIK-KEL------------KKSLPAYMIPRKFI-YRDQLPLTANGKIDRKALAEEV 500
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 90/379 (23%), Positives = 140/379 (36%), Gaps = 81/379 (21%)
Query: 42 MLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI- 100
++TAD G+ R + +I +TSGTTG PKG V +H+ V++ I
Sbjct: 83 LITAD---GFLRRGKRV---DLKDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFC 136
Query: 101 VGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFI---PKFESKSAL-EAVEQHCVTS 156
D L + + G + L++GA V P + L VE+H VT
Sbjct: 137 FDLKPGDRLLWITDMGWMMGPWLVLGGLLLGATIVLYEGAPDYPDPDRLWRIVERHKVTH 196
Query: 157 LITVPAIMADLATLIRVKKTWKG-------RDSVKKILNGGGGLPSELMKEATNSFP--- 206
L P TLIR + S++ + + G E +
Sbjct: 197 LGLSP-------TLIRALRAHGDAPVEGHDLSSLRVLGSTG---------EPWDPESWLW 240
Query: 207 --------KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVC 258
+A +I+ G TE S + P P +F +P
Sbjct: 241 LFERVGGGRAPIINYSGGTEISGGILGNVPIRP------IKPCSFNGPSPG-----MDAD 289
Query: 259 V----GKPAPHV--ELKVCSDGSSHVGRILTRG-----AHVMLRYWDQFLAKPSVSTGEV 307
V G+P EL V + G +TRG + YW +F V
Sbjct: 290 VVDEDGRPVRGEVGEL-VVR--APWPG--MTRGFWRDPERYLETYWSRF--------PGV 336
Query: 308 WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANAR 367
W+ GD +D+ G +++GR + IK G+ V P E+E+VL HP + +G+ +
Sbjct: 337 WVH-GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPV 395
Query: 368 LTEMVVACVRLRESWQWSE 386
E +V V L+ S
Sbjct: 396 KGEAIVCFVVLKPGVTPSA 414
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 308 WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANAR 367
W GDIG +D+ G ++L R I SGG N+YP+E E +L+ HP + V G+ N
Sbjct: 383 WSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNED 442
Query: 368 LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWR 427
L E V A V+ D L + L CR+ L+ K PR + +
Sbjct: 443 LGEEVKAVVQP----------VDGVDPGPAL---AAELIAFCRQ-RLSRQKCPRS-IDFE 487
Query: 428 KPFPLTSTGKIRRDEVR 444
P TGK+ + +R
Sbjct: 488 DELPRLPTGKLYKRLLR 504
|
Length = 511 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 7e-13
Identities = 85/310 (27%), Positives = 132/310 (42%), Gaps = 33/310 (10%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVG 131
+TSG+TG PKGV +H+AL + A + DV + AP+ + L+ G
Sbjct: 1280 YTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITG 1339
Query: 132 ACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILN 188
V E + E V+Q+ VT+L VP L L + S++++ +
Sbjct: 1340 CRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPP----LLQLFIDEPLAAACTSLRRLFS 1395
Query: 189 GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLT-FMTLYDPTLETPGQLPQAFGNVT 247
GG LP+EL P+ +L + YG TET+ ++T + + +P P GNV
Sbjct: 1396 GGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRP--LGNV- 1452
Query: 248 PNSVHQPQGVC------VGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPS 301
+C + P V ++C G+ L R A R F+ P
Sbjct: 1453 ---------LCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAER----FVPDPL 1499
Query: 302 VSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361
G TGD + G + +GR + ++K G V PEE++A LL PG+ V+
Sbjct: 1500 GEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVL 1559
Query: 362 ---GIANARL 368
G A A+L
Sbjct: 1560 VREGAAGAQL 1569
|
Length = 4334 |
| >gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 7e-13
Identities = 90/397 (22%), Positives = 138/397 (34%), Gaps = 104/397 (26%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI--AIVGYGE------DDVYLHTAP 114
E ++ ++SGTTG PK LI +S +I I Y E D+ + P
Sbjct: 99 LAEEPSLLQYSSGTTGEPK--------LIRRSWTEIDREIEAYNEALNCEQDETPIVACP 150
Query: 115 LCHIGGL-SSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRV 173
+ H GL +A L G+ V I K AL + L VP ++ L L+
Sbjct: 151 VTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPG 210
Query: 174 KKTWKGRDSVKKILNGGGGLPSEL---MKEATNSFPKAKLISAYGMTETSS-SLTFMTLY 229
++ G LP ++E T ++ YG +E S+
Sbjct: 211 TFQ------FHAVMTSGTPLPEAWFYKLRERTT-----YMMQQYGCSEAGCVSIC----- 254
Query: 230 DPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVM 289
P +++ L G P PHV + SD A
Sbjct: 255 -PDMKSHLDL--------------------GNPLPHVSVSAGSD----------ENA--- 280
Query: 290 LRYWDQFLAKPS---VSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE 346
P V G+ + T D+G + G + +GR + I G NVYP EVE
Sbjct: 281 ----------PEEIVVKMGDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVE 330
Query: 347 AVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 406
V+L+ PG+ VV + E V A V E + LR
Sbjct: 331 DVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEE------------------IDPVQLR 372
Query: 407 QHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 443
+ C ++L ++ P + P + GK+ R +
Sbjct: 373 EWCI-QHLAPYQVPHEIESVTE-IPKNANGKVSRKLL 407
|
Length = 414 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 88/359 (24%), Positives = 132/359 (36%), Gaps = 115/359 (32%)
Query: 68 VIICFTSGTTGSPKGVVISHSALIVQSLAKIA------IVGYGEDDVYLHTAPLCHIGGL 121
+I +TSGTTG PKGV+ +H +L + + I ED+ Y PL HI
Sbjct: 267 ALIMYTSGTTGDPKGVMHTHGSL-TAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEF 325
Query: 122 SSAMAMLMVGACHV---------------------FIPK--------FES-KSALEAVEQ 151
L G + F P F++ K A+EA
Sbjct: 326 GVTNIFLARG-ALIGFGSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEA--- 381
Query: 152 HCVTSLITVPAI---MADLATLIRVKKTWKGRDS------------------VKKILNGG 190
L V ++ + D A R++ +G+D+ V+ +L+GG
Sbjct: 382 ----KLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGG 437
Query: 191 GGLPSELMKEATNSFPK---AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 247
G L AT F +I +G+TET Q G++
Sbjct: 438 GPL-----SAATQEFVNVVFGMVIQGWGLTETVCCGGI---------------QRTGDLE 477
Query: 248 PNSVHQPQGVCVGKPAPHVELKVC-SDGSSHV------GRILTRGAHVMLRYWDQFLAKP 300
PN VG+ VE+K+ ++ H G IL RG + Y+ Q
Sbjct: 478 PN--------AVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQ----E 525
Query: 301 SVSTGEV-----WLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVYPEEVEAVLLQHP 353
+ T EV W TGD+GSI G + ++GR K GE + E +EA+ Q+
Sbjct: 526 EL-TREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNE 583
|
Length = 700 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 3e-12
Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 29/140 (20%)
Query: 308 WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP-----GIIGI--VV 360
W +GD +D+ G W GR + IK+ GE V P EVE+ L++HP G+IG V
Sbjct: 433 WYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPV 492
Query: 361 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAP 420
G E++ A V LR ++ SE EL +R ++ L AP
Sbjct: 493 RG-------EIIKAFVALRPGYEPSE----------ELKEE---IRGFVKKG-LGAHAAP 531
Query: 421 RLFVLWRKPFPLTSTGKIRR 440
R ++ P T +GKI R
Sbjct: 532 REIE-FKDKLPKTRSGKIMR 550
|
Length = 570 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 5e-12
Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 44/223 (19%)
Query: 188 NGGGGLPSELMKEATNSF------PKAKLISAYGMTETSSSLTFMTL------------- 228
G + +++ + +F KA + S YG+ E + +++F L
Sbjct: 306 IGADMIRPDVLHQFAEAFAPAGFDDKAFMPS-YGLAEATLAVSFSPLGSGIVVEEVDRDR 364
Query: 229 --YDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-----HVGRI 281
Y PG + V GK P E+++ ++ VG I
Sbjct: 365 LEYQGKAVAPGAETRRVRTF----------VNCGKALPGHEIEIRNEAGMPLPERVVGHI 414
Query: 282 LTRGAHVMLRYW-DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENV 340
RG +M Y+ D+ + G WLDTGD+G + DG +++ GR I G N+
Sbjct: 415 CVRGPSLMSGYFRDEESQDVLAADG--WLDTGDLGYLLDG-YLYITGRAKDLIIINGRNI 471
Query: 341 YPEEVEAVLLQHPGIIG--IVVVGIANARLTEMVVACVRLRES 381
+P+++E + Q P + IA E +V V+ R S
Sbjct: 472 WPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRIS 513
|
Length = 579 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 100/401 (24%), Positives = 163/401 (40%), Gaps = 60/401 (14%)
Query: 57 PFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLC 116
P +S P+ + +TSG+TG PKGV++ ++ L+K+ + E DV TA
Sbjct: 3862 PGIYS-GPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQS 3920
Query: 117 HIGGLSSAMAMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRV 173
+ +A + GA +P + + L V+ +T L +VP+++ + +
Sbjct: 3921 FDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGM-----L 3975
Query: 174 KKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTL 233
+ + D ++ +L G +P EL ++ +P+ L++AYG E S + F + D
Sbjct: 3976 AEDRQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRV-DLAS 4034
Query: 234 ETPGQLPQAFGNVTPNSVHQ---------PQGVCVGKPAPHVELKVCSDGSSHVGRILTR 284
LP G+ T N+ P G VG EL V G VGR
Sbjct: 4035 TRGSYLP--IGSPTDNNRLYLLDEALELVPLGA-VG------ELCVAGTG---VGR---- 4078
Query: 285 GAHVM--LRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYP 342
+V LR F+ P + GE TGD+ G + VGR + ++K G +
Sbjct: 4079 -GYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIEL 4137
Query: 343 EEVEAVLLQHPGI---IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELL 399
E+EA L + + V G+ L +V ++ Q LL
Sbjct: 4138 GEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVP----------HQTVLAQG----ALL 4183
Query: 400 LSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
E ++Q R L + P L LW PL + GK+ R
Sbjct: 4184 ---ERIKQRLR-AELPDYMVP-LHWLWLDRLPLNANGKLDR 4219
|
Length = 4334 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 72 FTSGTTGSPKGVV-------ISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 124
++SGTTG PKG+ + L ++ G+ D VYL APL H +
Sbjct: 161 YSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRL--WGFRSDMVYLSPAPLYHSAPQRAV 218
Query: 125 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAI 163
M ++ +G + + F+++ L +E++ VT VP +
Sbjct: 219 MLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTM 257
|
Length = 511 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 98/405 (24%), Positives = 160/405 (39%), Gaps = 75/405 (18%)
Query: 70 ICFTSGTTGSPKGVVIS---HSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAM 125
I +TSGTTG PKGVV ++ + S+ I G DV+ + + + G S
Sbjct: 225 ILYTSGTTGKPKGVVRDTGGYAVALKWSMRNI--YGIKPGDVFWAASDVGWVVGHSYIVY 282
Query: 126 AMLMVGACHVFIPKFESK-------SAL-EAVEQHCVTSLITVP----AIMADLATLIRV 173
L+ GA V +E K A +E++ V +L T P AI +
Sbjct: 283 GPLLHGATTVL---YEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYI 339
Query: 174 KKTWKGRD--SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDP 231
KK D S++ + G L S ++ + +I + TET +T
Sbjct: 340 KKY----DLSSLRALFLAGERLDSPTLEWIEKTLGVP-VIDHWWQTETGWPIT------A 388
Query: 232 TLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRI----- 281
LP G +P GKP P +++V + G +G I
Sbjct: 389 NCVGLELLPIKPG--SP-----------GKPVPGYDVQVLDETGEELGPGELGNIVIKLP 435
Query: 282 LTRGAHVMLRYW--DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGEN 339
L G +L W D+ K ++ + DTGD G D+ G ++++GR + I G
Sbjct: 436 LPPGC--LLTLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHR 493
Query: 340 VYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELL 399
+ E+E +L+HP + VVG+ + ++ + V L++ +N+
Sbjct: 494 LSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVLKD----DCKIDADQLENE--- 546
Query: 400 LSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
+ RE + A R V++ K P T +GKI R +R
Sbjct: 547 -----IVALVRE-QIGPVAAFRN-VVFVKRLPKTRSGKILRRTLR 584
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 7e-11
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 64 PEGAVIICFTSGTTGSPKGVV--ISHSALIVQSLAKIAIVGY----GEDDVYLHTAPLCH 117
GA ++ ++SGTTG PKG+ + +A++G+ G D VYL APL H
Sbjct: 140 TAGADML-YSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYH 198
Query: 118 IGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPA 162
L M+ L +G V + KF+++ AL +E++ VT VP
Sbjct: 199 TAPLRFGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPT 243
|
Length = 502 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 27/69 (39%), Positives = 36/69 (52%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS 123
PE IC+TSGTTG+PKGVV++H LI + DV++ PL HI +
Sbjct: 220 PEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVN 279
Query: 124 AMAMLMVGA 132
+ ML G
Sbjct: 280 QIVMLHYGV 288
|
Length = 651 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 5e-10
Identities = 75/315 (23%), Positives = 122/315 (38%), Gaps = 43/315 (13%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIVGYG--EDDVYLHTAPLCHIGGLSSAMAMLM 129
+TSGTTG PK VI HS +A A +G +DV PL H G + +
Sbjct: 111 YTSGTTGLPKAAVIVHSRYY--RIAAGAYYAFGMRPEDVVYDCLPLYHSAGGIMGVGQAL 168
Query: 130 VGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNG 189
+ V I K S S CV T+ + ++ + + + L
Sbjct: 169 LHGSTVVIRKKFSASNFWD---DCVKYNCTIVQYIGEICRYLLAQPPSEEEQKHNVRLAV 225
Query: 190 GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLT----------FMTLYDPTLETPGQL 239
G GL ++ ++ F ++ YG TE +SSL F + P++ P +L
Sbjct: 226 GNGLRPQIWEQFVRRFGIPQIGEFYGATEGNSSLVNIDNHVGACGFNSRILPSV-YPIRL 284
Query: 240 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH--VGRILTRGAHVMLRYWDQFL 297
+ T + G+C+ C G VG+I+ LR +D ++
Sbjct: 285 IKV-DEDTGELIRDSDGLCI----------PCQPGEPGLLVGKIIQNDP---LRRFDGYV 330
Query: 298 ---------AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV 348
A+ G+ +GD+ +D+ G ++ R + GENV EVE +
Sbjct: 331 NEGATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTEVEGI 390
Query: 349 LLQHPGIIGIVVVGI 363
L G+ +VV G+
Sbjct: 391 LSNVLGLEDVVVYGV 405
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 5e-10
Identities = 109/450 (24%), Positives = 175/450 (38%), Gaps = 98/450 (21%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALI-----VQSLAKIAIVGYGEDDVYLHTAPLCHI 118
I +TSGTTG PKGV+IS+ +++ V L K A DVYL PL HI
Sbjct: 222 KSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHI 281
Query: 119 GGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMA------------- 165
+ GA F + + K +E + + T VP ++
Sbjct: 282 FDRVIEECFIQHGAAIGFW-RGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDG 340
Query: 166 --------DLATLIRVKKTWKGRDSVK-----------KILNGGGGLPSELMKEAT---- 202
D A + KG+ V+ K+ G GG ++ A
Sbjct: 341 GFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLAS 400
Query: 203 --NSFPKA----KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQG 256
SF + ++ YG+TE+ + TF++L D L+ G
Sbjct: 401 HVESFLRVVACCHVLQGYGLTESCAG-TFVSLPD-ELDMLGT------------------ 440
Query: 257 VCVGKPAPHVELKVCSD--------GSSHVGRILTRGAHVMLRYWD-QFLAKPSVSTGEV 307
VG P P+V++++ S S+ G I RG + Y+ + L K + G
Sbjct: 441 --VGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLIDG-- 496
Query: 308 WLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIA-N 365
WL TGD+G G++ ++ R+ K S GE V E +E + + + + V G +
Sbjct: 497 WLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFE 556
Query: 366 ARLTEMVVACVRLRESWQWS-------ESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK 418
+ L + ++ E W + C Q+ K KE +L L + +EK + GF+
Sbjct: 557 SFLVAIANPNQQILERWAAENGVSGDYNALC-QNEKAKEFILGE--LVKMAKEKKMKGFE 613
Query: 419 APRLFVLWRKPFP-----LTSTGKIRRDEV 443
+ L PF LT T K +R ++
Sbjct: 614 IIKAIHLDPVPFDMERDLLTPTFKKKRPQL 643
|
Length = 666 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 57/258 (22%)
Query: 205 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAP 264
F +YG+ E++ ++T + PG + T + + +G P P
Sbjct: 301 FDAGAAAPSYGLAESTCAVT--------VPVPGIGLRVDEVTTDDGSGARRHAVLGNPIP 352
Query: 265 HVELKV-CSDGSS-----HVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSID 318
+E+++ DG++ +G I RGA +M Y L + + + W TGD+G +
Sbjct: 353 GMEVRISPGDGAAGVAGREIGEIEIRGASMMSGY----LGQAPIDPDD-WFPTGDLGYLV 407
Query: 319 DGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII--GIVVVGIANARLTEMVVACV 376
DGG V + GR I G N++P E+E V Q G+ +V VG +V
Sbjct: 408 DGGLV-VCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAA 466
Query: 377 RLRESWQWSESNCDQSSKNKELL---------LSSEVLRQHCREKNLTGFKAPRLFVLWR 427
R D++ E++ + S+V+ F AP
Sbjct: 467 EFRGP--------DEAGARSEVVQRVASECGVVPSDVV-----------FVAP------- 500
Query: 428 KPFPLTSTGKIRRDEVRR 445
P TS+GK+RR V+R
Sbjct: 501 GSLPRTSSGKLRRLAVKR 518
|
Length = 525 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 33/150 (22%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGL 121
+P +I +TSG+TG PKGV+++H ++ + +V G++DVYL PL HI L
Sbjct: 248 SPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILEL 307
Query: 122 SSAMAMLMVGAC------HVFIP-----KFESK---SALEAVEQHCVTSLITVPAIMADL 167
++ M VGA K +K SAL+ T + VPAI
Sbjct: 308 AAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKP------TLMTAVPAI---- 357
Query: 168 ATLIRVKKTWKGRDSVKKILNGGGGLPSEL 197
L RV RD V+K ++ GGL +L
Sbjct: 358 --LDRV------RDGVRKKVDAKGGLAKKL 379
|
Length = 696 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 69/320 (21%), Positives = 122/320 (38%), Gaps = 45/320 (14%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
P I FTSG+TG PKGV++ +A++ + L DDV L P +
Sbjct: 596 QPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVW 655
Query: 123 SAMAMLMVGACHVFIPKFESKSALE---AVEQHCVTSLITVPAIMADLATLIRVKKTWKG 179
+ GA V + L ++ VT+ VP+++A + + +
Sbjct: 656 EFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQS 715
Query: 180 RDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
S++++ G LP++L +E A L + YG TE + ++ + P
Sbjct: 716 CASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVS----WYPA------F 764
Query: 240 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----------GRILTRGAHV 288
+ V +SV P +G P + L++ V G L +G
Sbjct: 765 GEELAAVRGSSV--P----IGYPVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQG--- 815
Query: 289 MLRYWDQ-------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVY 341
Y + F+A P ++ TGD+ D G V +GR + ++K G+ +
Sbjct: 816 ---YLGRPDLTASRFIADPFAPGERMYR-TGDVARWLDDGAVEYLGRSDDQLKIRGQRIE 871
Query: 342 PEEVEAVLLQHPGIIGIVVV 361
E++ + P + V
Sbjct: 872 LGEIDRAMQALPDVEQAVTH 891
|
Length = 1296 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 115/439 (26%), Positives = 173/439 (39%), Gaps = 116/439 (26%)
Query: 72 FTSGTTGSPKGVVISHSALIV--QSLAKIAIVGYG----EDDVYLHTAPLCHIGGLSSAM 125
+TSG+T +P GV++SH +I + L G D + P H GL +
Sbjct: 167 YTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGV 226
Query: 126 AMLMVGACH-VFI-P-KFESKSA----LEAVEQHCVTSLITVPAIMADLATLIRVKKT-- 176
++G C V P F + A L A H ++ P +LA V+KT
Sbjct: 227 CAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFSA---APNFAFELA----VRKTSD 279
Query: 177 --WKGRD--SVKKILNGGGGLPSELMKEAT-----------NSFPKAKLISAYGMTETSS 221
G D V I++G SE + AT N + + +YG+ E
Sbjct: 280 DDMAGLDLGGVLGIISG-----SERVHPATLKRFADRFAPFN-LRETAIRPSYGLAEA-- 331
Query: 222 SLTFMTLYDPTLETPGQLPQ-----------------AFGNVTP-NSVHQPQG--VCVGK 261
T+Y T PGQ P+ G TP S P+ V +
Sbjct: 332 -----TVYVAT-REPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPRSPTVRIVD 385
Query: 262 PAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ----------FLAKPSVSTGE-VWLD 310
P +E C G+ VG I G +V YW + L PS T E WL
Sbjct: 386 PDTCIE---CPAGT--VGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLR 440
Query: 311 TGDIGSIDDGGNVWLVGRRNGRIKS----GGENVYPEEVEAVLLQHPGIIGIVVVGIA-N 365
TGD+G I +G +++V GRIK G N YP+++EA + + I G V I+
Sbjct: 441 TGDLGFISEGE-LFIV----GRIKDLLIVDGRNHYPDDIEATIQE---ITGGRVAAISVP 492
Query: 366 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVL----RQHCREKNLTGFKAPR 421
TE +VA + L++ + D+ + ++ + EV + H G
Sbjct: 493 DDGTEKLVAIIELKK-----RGDSDEEAMDRLRTVKREVTSAISKSH-------GLSVAD 540
Query: 422 LFVLWRKPFPLTSTGKIRR 440
L ++ P+T++GKIRR
Sbjct: 541 LVLVAPGSIPITTSGKIRR 559
|
Length = 578 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 78/318 (24%), Positives = 123/318 (38%), Gaps = 49/318 (15%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLM-V 130
+TSGTTG PK ISH ++ Q +++ G DDV T PL H G + + +
Sbjct: 149 YTSGTTGLPKAARISHLRVL-QCSGMLSLCGVTADDVVYTTLPLYHSSGALLGIVGCIGL 207
Query: 131 GACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD-SVKKILNG 189
GA V PKF + + ++ VT + + L L ++ RD V+ +
Sbjct: 208 GATLVLKPKFSASQFWDDCRKYNVTVFQYIGEL---LRYLCNQPQSDNDRDHKVRLAI-- 262
Query: 190 GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA------- 242
G GL ++ +E F + Y TE ++ F+ G + +A
Sbjct: 263 GNGLRPDVWREFLRRFGPIHVWETYASTE--GNIGFINYTG----RVGAVGRASCLYKLL 316
Query: 243 -------FGNVTPNSVHQPQGVCVGKPAPHVELKVC--SDGSSHVG----RILTRGAHVM 289
+ V QG C+ L + + S +G R LT +
Sbjct: 317 SPFELIKYDVEKDEPVRDAQGFCIPVGKGEPGLLISKITSQSPFLGYAGPRELTEKK--L 374
Query: 290 LRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 349
LR D F K G+V+ +TGD+ D ++ R + GENV EV +L
Sbjct: 375 LR--DVF--KK----GDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGENVATTEVADIL 426
Query: 350 -----LQHPGIIGIVVVG 362
+Q + G+ V G
Sbjct: 427 TMVDFIQEVNVYGVTVPG 444
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 6e-09
Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 65/309 (21%)
Query: 164 MADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSL 223
MAD +VK GR ++ +++GG L +E+ +E A ++ YG+TET
Sbjct: 368 MADFLAFRKVKAKLGGR--LRLLISGGAPLSTEI-EEFLRVTSCAFVVQGYGLTET---- 420
Query: 224 TFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVC----VGKPAPHVELKVCSD------ 273
+ P ++ P +C VG PA + EL++
Sbjct: 421 ----------------------LGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYD 458
Query: 274 --GSSHVGRILTRGAHVMLRYW-DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRN 330
G G I RG + Y+ + L + + G W TGDIG I G + ++ R+
Sbjct: 459 PLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDG--WFHTGDIGEILPNGVLKIIDRKK 516
Query: 331 GRIK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRE--SWQWSES 387
IK S GE V E +E V Q+P + I V G + M+VA V E + +W++
Sbjct: 517 NLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKD 573
Query: 388 NCDQSSKNKELLLSSEVLRQH-------CREKN-LTGFKAPRLFVLWRKPFPL-----TS 434
N + + E L S L++H EKN L GF+ + +L KPF + T+
Sbjct: 574 N--GFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTA 631
Query: 435 TGKIRRDEV 443
T K RR+ +
Sbjct: 632 TLKKRRNNL 640
|
Length = 660 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 72/311 (23%), Positives = 130/311 (41%), Gaps = 53/311 (17%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALI----VQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
+ + FTSGTTG PK V++++ + + V + + P HIGGL
Sbjct: 171 PLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLW 230
Query: 123 SAMAMLMVGACHVFIPKFESKSAL-EAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 181
+ LM G + + E+ ++L E + + V + VP +++ L + +K
Sbjct: 231 WILTCLMHGG--LCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVS--ELKSANATVP 286
Query: 182 SVKKILNGGGGLPSELMK--EATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
S++ + GG + ++ EAT + YG++ET + L PT
Sbjct: 287 SLRLVGYGGSRAIAADVRFIEATG----VRTAQVYGLSETGCT----ALCLPT------- 331
Query: 240 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----------SSHVGRILTRGAHV 288
S+ + + VG+P P V++ + + S+ G + +
Sbjct: 332 -------DDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPAN 384
Query: 289 MLRYWDQFLAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEE 344
ML YW+ P T EV W++TGD+ + G ++ GR + I GG N+ P+E
Sbjct: 385 MLGYWNN----PE-RTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDE 439
Query: 345 VEAVLLQHPGI 355
V+ + G+
Sbjct: 440 VDRIAEGVSGV 450
|
Length = 540 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 1e-07
Identities = 89/393 (22%), Positives = 145/393 (36%), Gaps = 63/393 (16%)
Query: 65 EGAVIICFTSGTTGSPKGVVISHSALI--VQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
+ +TSGTTG PK + H+ + V ++ + A+ +D L +A + GL
Sbjct: 145 DALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-RLTPEDTGLCSARMYFAYGLG 203
Query: 123 SAMAM-LMVGACHVFIP---KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWK 178
+++ L G V E+ + L A V L VP A +
Sbjct: 204 NSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSV--LYGVPNFFARVIDSCSPDSF-- 259
Query: 179 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 238
S++ +++ G L L + F ++ G TE TF++
Sbjct: 260 --RSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQ--TFVS----------- 304
Query: 239 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKV-----CSDGSSHVGRILTRGAHVMLRYW 293
N V + + +G+ P E++V + G G + RG + YW
Sbjct: 305 ----------NRVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYW 354
Query: 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 353
++ S E WLDT D ID G V R + GG NV P EVE ++++
Sbjct: 355 NR---PDSPVANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDE 411
Query: 354 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE-- 411
+ VV + + + A + S + D S V+R R
Sbjct: 412 AVAEAAVVAVRESTGASTLQAFLV-----ATSGATIDGS-----------VMRDLHRGLL 455
Query: 412 KNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
L+ FK P F + + P T GK+ R +R
Sbjct: 456 NRLSAFKVPHRFAVVDR-LPRTPNGKLVRGALR 487
|
Length = 705 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 62/269 (23%), Positives = 100/269 (37%), Gaps = 77/269 (28%)
Query: 205 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAP 264
FP A + + YG TE + ++T + + D L+ +LP +G P
Sbjct: 284 FPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLP------------------IGYAKP 325
Query: 265 HVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAKPSVSTG---------EVWLD 310
L + + + + G I+ G PSVS G E +
Sbjct: 326 DSPLLIIDEEGTKLPDGEQGEIVISG--------------PSVSKGYLNNPEKTAEAFFT 371
Query: 311 --------TGDIGSIDDGGNVWLV-GRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361
TGD G ++DG + GR + +IK G + EE+E L Q + VVV
Sbjct: 372 FDGQPAYHTGDAGYLEDG--LLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVV 429
Query: 362 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE---KNLTGFK 418
+ ++A V +E +E L+ + ++ + L +
Sbjct: 430 PYNKDHKVQYLIAYVVPKE-----------EDFEREFELTKAI-----KKELKERLMEYM 473
Query: 419 APRLFVLWRKPFPLTSTGKIRRDEVRREV 447
PR F+ +R PLT GKI R + EV
Sbjct: 474 IPRKFI-YRDSLPLTPNGKIDRKALIEEV 501
|
Length = 503 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 72/344 (20%), Positives = 133/344 (38%), Gaps = 64/344 (18%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQ-SLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAM--- 125
I +TSGTTG+ K VV S+ +V +I+ V + IG +S
Sbjct: 259 ILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHS---SIGWVSFHGFLY 315
Query: 126 AMLMVGACHVFI------PKFESKSALEAVEQHCVTSLITVPAIMADL------ATLIRV 173
L +G V K +E+H VT +T+P + L AT+IR
Sbjct: 316 GSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRS 375
Query: 174 KKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKL----ISAYGMTETSSSLTFMTLY 229
K ++K+I GG E+++E+ + + KL YG TE + +
Sbjct: 376 KYDLS---NLKEIWCGG-----EVIEESIPEYIENKLKIKSSRGYGQTEIGITYLY---- 423
Query: 230 DPTLETPGQLPQAFGNVT-PNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILT 283
+G++ P + G P+ ++ + S+ + +G +
Sbjct: 424 ------------CYGHINIPYNA-------TGVPSIFIKPSILSEDGKELNVNEIGEVAF 464
Query: 284 R----GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGEN 339
+ + Y + K S + ++GD+G D+ G +V R + +IK G
Sbjct: 465 KLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNK 524
Query: 340 VYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQ 383
V +E +L+HP ++ +GI + + + + L++
Sbjct: 525 VQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQS 568
|
Length = 647 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 7e-07
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH----I 118
P+ + +TSG+TG+PKGV+++H L+ A G DDV + PL H I
Sbjct: 146 DPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDPDDVGVSWLPLYHDMGLI 205
Query: 119 GGLSSAMAMLMVGACHVFIP 138
GGL + G V +
Sbjct: 206 GGLLQPLY---AGFPVVLMS 222
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALI--VQSLAKIAIVGYGEDDVYLHTAPLCHIGGL 121
PE A +I FTSG+ G PKGVV SH +L+ V+ + IA + +D ++ PL H GL
Sbjct: 364 PEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA--DFTPNDRFMSALPLFHSFGL 421
Query: 122 S-SAMAMLMVGACHVFI 137
+ L+ GA VF+
Sbjct: 422 TVGLFTPLLTGA-EVFL 437
|
Length = 718 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 80/313 (25%), Positives = 125/313 (39%), Gaps = 63/313 (20%)
Query: 161 PAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220
P+ M D ++K GR V+ + +G L ++M+ F +++ YGMTETS
Sbjct: 358 PSPMWDRLVFNKIKAKLGGR--VRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETS 414
Query: 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS-------- 272
++ M D S H VG P P E+K+
Sbjct: 415 CVISGMDEGDNL-----------------SGH------VGSPNPACEVKLVDVPEMNYTS 451
Query: 273 -DGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEV-----WLDTGDIGSIDDGGNVWLV 326
D G I RG + Y+ K V T EV WL TGDIG GG + ++
Sbjct: 452 EDQPYPRGEICVRGPIIFKGYY-----KDEVQTREVIDEDGWLHTGDIGLWLPGGRLKII 506
Query: 327 GRRNGRIK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIA-NARLTEMVVACVRLRESWQW 384
R+ K + GE + PE++E V + + V G + N+ L +VV + ++W
Sbjct: 507 DRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWAA 566
Query: 385 SESN--------CDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP----- 431
SE C+ +L + + RE L GF+ + L +PF
Sbjct: 567 SEGIKYEDLKQLCNDPRVRAAVLADMDAV---GREAQLRGFEFAKAVTLVPEPFTVENGL 623
Query: 432 LTSTGKIRRDEVR 444
LT T K++R + +
Sbjct: 624 LTPTFKVKRPQAK 636
|
Length = 651 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 111/409 (27%), Positives = 160/409 (39%), Gaps = 57/409 (13%)
Query: 65 EGAVIICFTSGTTGSPKGVVISHSALIVQSLA--KIAIVGYGEDDVYLHTAPLCHIGGLS 122
E + + +TSG+TG PKGV+ + +V + K A Y DVY TA I G S
Sbjct: 275 EDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-DYKPTDVYWCTADCGWITGHS 333
Query: 123 SAMAMLMVGACHVFI----PKF-ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 177
M+ V + P + +S + V+++ VT T P + + +L+R +
Sbjct: 334 YVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTL---VRSLMRDGDEY 390
Query: 178 KGRDSVKKILNGGGGLPSELMKEATNSF------PKAKLISAYGMTETSSSLTFMTLYDP 231
R S +K L G + + A F + + + TET FM
Sbjct: 391 VTRHS-RKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG---FMIT--- 443
Query: 232 TLETPGQLPQAFGNVT-PNSVHQPQGVCVGKPAPHVELKVCSD----GSSHVGRILT-RG 285
PG PQ G+ T P QP V V + +E + CS S G T G
Sbjct: 444 --PLPGAWPQKPGSATFPFFGVQP--VIVDEKGKEIEGE-CSGYLCVKKSWPGAFRTLYG 498
Query: 286 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEV 345
H RY + KP + +GD S D G WL GR + I G + EV
Sbjct: 499 DHE--RYETTYF-KPFAG----YYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEV 551
Query: 346 EAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVL 405
E+ L+ HP VVGI + + + A V L E +SE L S +L
Sbjct: 552 ESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEE-----------LRKSLIL 600
Query: 406 RQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSL 454
+ + F AP + W P T +GKI R +R+ L L
Sbjct: 601 TVRNQ---IGAFAAPDK-IHWAPGLPKTRSGKIMRRILRKIASRQLDEL 645
|
Length = 666 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 311 TGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 370
TGD D G +W+ GR + I G + E+E+ L+ HP + VVGI + +
Sbjct: 479 TGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQ 538
Query: 371 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF 430
+ A V L++ ++ + EL + LR+H R K + P + +
Sbjct: 539 AIYAFVTLKDGYEPDD----------EL---RKELRKHVR-KEIGPIAKPDK-IRFVPGL 583
Query: 431 PLTSTGKIRR 440
P T +GKI R
Sbjct: 584 PKTRSGKIMR 593
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH-IGGLSSAMAMLMV 130
+TSGTTG PK V+SH + ++ DDV PL H GG + ++L
Sbjct: 206 YTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAA 265
Query: 131 GACHVFIPKF 140
GA KF
Sbjct: 266 GATLALRRKF 275
|
Length = 600 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 305 GEVWLDTGDIGSIDDGGNVWLVGRRNG---RIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361
G+ W +TGD+ D G+ V R G R K GENV EVE L PG+ VV
Sbjct: 437 GDAWFNTGDLMRDDGFGHAQFVDRL-GDTFRWK--GENVATTEVENALSGFPGVEEAVVY 493
Query: 362 GIA 364
G+
Sbjct: 494 GVE 496
|
Length = 600 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLA-----KIAIVGYGEDDVYLHTAPLCHI 118
I +TSGTTG PKGV++++ A+I + L+ K+ E+D Y PL H+
Sbjct: 225 IMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHV 278
|
Length = 660 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 28/201 (13%)
Query: 252 HQP-QGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYW--DQFLAKPSVS-TGEV 307
QP V + P L+V D VG I G + YW + AK V G
Sbjct: 375 SQPGHAVLIVDP---QSLEVLGDNR--VGEIWASGPSIAHGYWRNPEASAKTFVEHDGRT 429
Query: 308 WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII--GIVVVGIAN 365
WL TGD+G + D G +++ GR + G N+YP+++E + + ++ G V N
Sbjct: 430 WLRTGDLGFLRD-GELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVN 488
Query: 366 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLS-SEVLRQHCREKNLTGFKAPRLFV 424
+ E + + S Q + + L+ S + + + C+E AP + +
Sbjct: 489 HQGEEGIGIAAEISRSVQ-------KILPPQALIKSIRQAVAEACQE-------APSVVL 534
Query: 425 LWRK-PFPLTSTGKIRRDEVR 444
L P TS+GK++R R
Sbjct: 535 LLNPGALPKTSSGKLQRSACR 555
|
Length = 4334 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTA 113
E I+ +TSG+TG PKGV+ H+A++ ++ EDDVY TA
Sbjct: 204 REDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTA 253
|
Length = 570 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 41 DMLTADILK--GYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALI 91
++T D LK + F H+ + I FTSGTTG PKGV ISH L+
Sbjct: 117 PVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLV 169
|
Length = 503 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 311 TGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 370
TGD D+ G W++GR + I G + EVE+ L+ HP + VVG + E
Sbjct: 467 TGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGE 526
Query: 371 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF 430
+ A V L++ + S+ L E L++H R++ + P +++
Sbjct: 527 AIYAFVTLKDGVEPSDE------------LRKE-LKKHVRKE-IGPIATPD-EIIFVPGL 571
Query: 431 PLTSTGKI-RR 440
P T +GKI RR
Sbjct: 572 PKTRSGKIMRR 582
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 76/337 (22%), Positives = 120/337 (35%), Gaps = 99/337 (29%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSAL--IVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL 121
P+ I +TSGT+G PKGV++S+ L V L K +I +L P+ HI
Sbjct: 303 PDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYER 362
Query: 122 SSAMAMLMVGA-CHV------FIPK--FESKSALEAVEQHCVTSLITVP--------AIM 164
A M+G ++ + K + SK + L VP IM
Sbjct: 363 VIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNI----------LAGVPKVFNRIYTNIM 412
Query: 165 ADLATLIRVKK----------------------------TWKGRDSVKK----ILNGGGG 192
++ L +K+ + K +D V ILNGGG
Sbjct: 413 TEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGK 472
Query: 193 LPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVH 252
L ++ +E + YG+TET+ + D E
Sbjct: 473 LSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQHADDNNTE------------------ 513
Query: 253 QPQGVCVGKP-APHVELKVCS------DGSSHVGRILTRGAHVMLRYWDQFLAKPSVS-- 303
+G P +P+ + KV + + G +L + + Y FL K
Sbjct: 514 -----SIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGY---FLEKEQTKNA 565
Query: 304 -TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGE 338
T + + TGDI I+ G++ + R G +K S GE
Sbjct: 566 FTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGE 602
|
Length = 746 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 58/240 (24%), Positives = 85/240 (35%), Gaps = 42/240 (17%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDD---VYLHTAPLCHIGGLSSAMAML 128
FTSG+TG PK V+ + + + + D V L P H G ++ L
Sbjct: 227 FTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGL 286
Query: 129 MVGACHVFI----P---KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 181
+ G ++I P FE + + + T VPA A LA + R
Sbjct: 287 LWGGGTLYIDDGKPLPGMFE--ETIRNLREISPTVYGNVPAGYAMLAEAMEKDDAL--RR 342
Query: 182 SVKKILN----GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 237
S K L GG L +L + + A + T + F T Y T ET
Sbjct: 343 SFFKNLRLMAYGGATLSDDLYER----------MQALAVRTTGHRIPFYTGYGAT-ETAP 391
Query: 238 QLPQAFGNVTPNSVHQP--QGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 295
T H + +G P P VELK+ G + R+ +G +V Y
Sbjct: 392 ---------TTTGTHWDTERVGLIGLPLPGVELKLAPVGDKYEVRV--KGPNVTPGYHKD 440
|
Length = 624 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 74/294 (25%), Positives = 115/294 (39%), Gaps = 57/294 (19%)
Query: 172 RVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDP 231
++K+ GR V+ +L+G LP + +E + L YG+TE S F ++
Sbjct: 376 KIKEGLGGR--VRLLLSGAAPLPRHV-EEFLRVTSCSVLSQGYGLTE-SCGGCFTSI--- 428
Query: 232 TLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS------DGSSHV--GRILT 283
NV VG P +E ++ S D S V G I
Sbjct: 429 ------------ANVFS------MVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICL 470
Query: 284 RGAHVMLRYWD-QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVY 341
RG + Y Q L + + G W TGDIG G + ++ R+ K S GE V
Sbjct: 471 RGNTLFSGYHKRQDLTEEVLIDG--WFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVA 528
Query: 342 PEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQ-WSESN---------CDQ 391
E +E + P I I V G N+ + +V V R++ + W+ +N C
Sbjct: 529 VENLENTYSRCPLIASIWVYG--NSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKN 586
Query: 392 SSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPL-----TSTGKIRR 440
K +L + L ++ L GF+ + L PF + T T K++R
Sbjct: 587 LKARKYIL---DELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKR 637
|
Length = 660 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 15/59 (25%)
Query: 70 ICFTSGTTGSPKGVVISHSALIV----------QSLAKIAIVGYGEDDVYLHTAPLCHI 118
I +TSGT+G PKGVV++H A+ Q K+ DDVYL PL HI
Sbjct: 225 IMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTH-----DDVYLSFLPLAHI 278
|
Length = 660 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 76/336 (22%), Positives = 115/336 (34%), Gaps = 79/336 (23%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVG 131
+TSG+T P GV I+H L L I + E D + P H GL + + ++G
Sbjct: 187 YTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPALLG 246
Query: 132 ACHVFIPKFESKSA-----------LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
H F S +A L + P + A + K G
Sbjct: 247 --HYI--TFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPK--DGE 300
Query: 181 DS-----VKKILNGGGGLPSELMKEATNSF-----PKAKLISAYGMTETSSSLTFMTLYD 230
VK +LNG + M++ +F P + +YGM E TL+
Sbjct: 301 PPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEA-------TLFV 353
Query: 231 PT----------------------LETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVEL 268
T +E P P A V+ V + + P EL
Sbjct: 354 STTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASEL 413
Query: 269 KVCSDGSSHVGRILTRGAHVMLRYWDQ-------FLAK------PSVSTG----EVWLDT 311
DG +G I G ++ YW + F S + G +W+ T
Sbjct: 414 ---PDG--QIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRT 468
Query: 312 GDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEA 347
GD G D G +++ GR + G N YP+++E
Sbjct: 469 GDYGVYFD-GELYITGRVKDLVIIDGRNHYPQDLEY 503
|
Length = 631 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 13/142 (9%)
Query: 305 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 364
G++W TGD+ D G + + R + ENV EV VL P + V G+
Sbjct: 336 GDIWYRTGDLLRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGVK 395
Query: 365 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV 424
+ C + ES+ ++ K L L + R K L + P LF+
Sbjct: 396 VPG-YDGRAGCAAI----TLEESSAVETEFTKNL------LAKLAR-KRLPSYAVP-LFL 442
Query: 425 LWRKPFPLTSTGKIRRDEVRRE 446
+ T K ++ +R+E
Sbjct: 443 RLTEEVATTGNHKQQKGVLRKE 464
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 27/87 (31%)
Query: 210 LISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELK 269
+++ GMTET+ S TF T L G +G PAP E+K
Sbjct: 368 MMTGLGMTETAPSATFTT---GPLSRAG--------------------NIGLPAPGCEVK 404
Query: 270 -VCSDGSSHVGRILTRGAHVMLRYWDQ 295
V G V R+ +G +V YW
Sbjct: 405 LVPVGGKLEV-RV--KGPNVTPGYWRA 428
|
Length = 614 |
| >gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 73/349 (20%), Positives = 113/349 (32%), Gaps = 73/349 (20%)
Query: 34 SDFVNKRDMLTADILKGYSLRS-LPFTHSWAPEGA-VIICFTSGTTGSPKGVVISHSALI 91
D D+ LR PF P+ V I +SGTTG P + +
Sbjct: 57 DDIKTLEDLAKLPFTTKDDLRENYPFGDFAVPKEEIVRIHASSGTTGKPTVFGYTAKDIE 116
Query: 92 VQS---LAKIAIVGYGEDDVYLHTAPL--CHIGGLSSAMAMLMVGACHVFIPKFESKSAL 146
+ + G + D + A GGL +GA + I ++ L
Sbjct: 117 RWAELLARSLYSAGVRKGDK-VQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNTERQL 175
Query: 147 EAVEQHCVTSLITVPAIMADLA-TLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 205
E ++ T + P+ + LA + S+KK + G E+ K N F
Sbjct: 176 ELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPD-KLSLKKGIFGAEPWSEEMRKVIENRF 234
Query: 206 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPH 265
K YG+TE G P A + G+ + +
Sbjct: 235 -GCKAFDIYGLTE------------------GFGPGAG------ECTERNGLHIWEDHFI 269
Query: 266 VEL------KVCSDGSSHVGRI----LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIG 315
E+ + DG G + LT+ ++RY TGDI
Sbjct: 270 FEIVDPETGEQLPDGER--GELVITTLTKEGMPLIRY-----------------RTGDIT 310
Query: 316 SIDDG----GNVW-----LVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 355
I G + GR + + G NV+P ++E VLLQ P +
Sbjct: 311 VILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEV 359
|
Length = 438 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 93/397 (23%), Positives = 144/397 (36%), Gaps = 64/397 (16%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQ-SLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAM 127
I +TSGTTG PKGV V +L+ AI G V + + + G S A
Sbjct: 237 ILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAP 296
Query: 128 LMVGACHVFIPKFESKSA----LEAVEQHCVTSLITVPAIMADLATLIRVKK----TWKG 179
L+ GA V + VE++ V ++ + P T IRV K W
Sbjct: 297 LLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAP-------TAIRVLKKQDAAWLR 349
Query: 180 R---DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS---------SSLTFMT 227
+ S+ + G L T+ K +I Y TET L +
Sbjct: 350 KHDLSSLHWLFLAGEPLDEPTAHWITDGLGKP-VIDNYWQTETGWPVLAIMPGLDLKPVK 408
Query: 228 LYDPTLETPGQLPQAFGNVT--PNSVHQPQGVCVGKPAPHVELK-VCSDGSSHVGRILTR 284
L P L G + T P ++ + V P P L V D R L
Sbjct: 409 LGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDD----ARFLKT 464
Query: 285 GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEE 344
YW F +P S+ D G D+ G +++GR + I G + E
Sbjct: 465 -------YWSHF-KRPLYSSF-------DWGIRDEDGYTFILGRTDDVINVAGHRLGTRE 509
Query: 345 VEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEV 404
+E + HP + + VVG+ + ++ V L+ES +++ D + +
Sbjct: 510 IEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAH-DPHAVETGM------ 562
Query: 405 LRQHCREKNLTGFKAP-RLFVLWRKPFPLTSTGKIRR 440
C + L P R++ + P T +GK+ R
Sbjct: 563 --MDCVVRQLGAVARPARVYFV--AALPKTRSGKLLR 595
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 51/244 (20%), Positives = 82/244 (33%), Gaps = 51/244 (20%)
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDD--VYLHTAPLCHIGGLSSAMAMLM 129
FTSG+TG PK V+ +H L + ++ V + P H G + M++
Sbjct: 171 FTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVL 230
Query: 130 VGACHVFIPKFESKSALEAVEQHC-------VTSLITVPAIMADLATLIRVKKTWKGRDS 182
++I + K E+ T VP L + RD+
Sbjct: 231 YNGGTLYID--DGKPVPGLFEETLRNLREVSPTVYFNVPKGFEMLVDALE-------RDA 281
Query: 183 ---------VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTL 233
++ + G LP ++ + A + T + + T
Sbjct: 282 ALRRRFFKRLRLLFYAGAALPQDVWDR----------LQALAVRTTGERIPMTSGLGAT- 330
Query: 234 ETPGQLPQAFGNVTPNSVHQPQGV--CVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLR 291
ET P A VH P +G PAP ELK+ +G R+ +G +V
Sbjct: 331 ETA---PTAT------FVHWPTDRSGVIGLPAPGTELKLVPNGGKLEVRV--KGPNVTPG 379
Query: 292 YWDQ 295
YW
Sbjct: 380 YWRD 383
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 259 VGKPAPHVELKVCS-DGSSHVGRILTRGAHVMLRYWDQFLAKPSV--------STGEV-- 307
VG+ P ++ ++ S G GR+ +G ++M Y + KP V + GE+
Sbjct: 533 VGRILPGMDARLLSVPGIEQGGRLQLKGPNIMNGYLR--VEKPGVLEVPTAENARGEMER 590
Query: 308 -WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 351
W DTGDI D+ G V + GR K GE V E VE + L
Sbjct: 591 GWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALG 635
|
Length = 718 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSS-AMAM 127
I +TSG+TG PKGV+ + ++ + + V + D++ TA + I G S
Sbjct: 241 ILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGP 300
Query: 128 LMVGACHVF---IPKFESKSAL-EAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 183
L GA V P + E +E+H VT T P T IR G + V
Sbjct: 301 LANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAP-------TAIRALMRL-GDEWV 352
Query: 184 KK 185
KK
Sbjct: 353 KK 354
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.97 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.96 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.94 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.9 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.83 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.7 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.4 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.16 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 99.1 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.06 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.67 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.96 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.78 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.76 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.61 |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-70 Score=535.82 Aligned_cols=349 Identities=33% Similarity=0.503 Sum_probs=313.0
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHH-HHhcCceEEecC
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMA-MLMVGACHVFIP 138 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~-~l~~G~~~v~~~ 138 (458)
.....+|++.++|||||||.||||++||+++..+.......+.+...|+.++.+|++|.+|+..++. ++..|+++++.+
T Consensus 179 ~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~ 258 (537)
T KOG1176|consen 179 RPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLR 258 (537)
T ss_pred ccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECC
Confidence 3456799999999999999999999999999988777777777888999999999999999987776 556666667777
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
+|++..++++|++|++|+++++|.++..|++.+.... ..++++|.+++||+++++++.+++.+++|...+.++||+||
T Consensus 259 ~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~--~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE 336 (537)
T KOG1176|consen 259 KFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKK--YDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTE 336 (537)
T ss_pred CCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCc--ccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeecccc
Confidence 7899999999999999999999999999998863322 35789999999999999999999999997799999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~ 293 (458)
+++.++.+..... ...+++|+++++.+.++.++. .++.||||++|++++.||+
T Consensus 337 ~~~~~~~~~~~~e----------------------~k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg~~imkGY~ 394 (537)
T KOG1176|consen 337 AGGLITSNDWGPE----------------------RKPGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRGPQVMKGYL 394 (537)
T ss_pred ccCceeecCCCcc----------------------CcccccCccccceEEEeeCCCCCCCCCCCceEEEEECcccchhhc
Confidence 9987776554322 133479999998888887764 6789999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
+||++|.+.++.+|||+|||+|++|+||+|++++|++|+||.+|++|+|.|||++|..||.|.|++||++||+.+||.++
T Consensus 395 ~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~ 474 (537)
T KOG1176|consen 395 KNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPA 474 (537)
T ss_pred CChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcce
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
|+|+.+++ ...+++++.++|++ +++.|++|+.++|+ ++||+|++||++|+.||+.+.+.
T Consensus 475 A~VV~k~g----------------~~lte~di~~~v~k-~l~~y~~~~~V~Fv-d~lPKs~~GKi~R~~lr~~~~~~ 533 (537)
T KOG1176|consen 475 AFVVLKKG----------------STLTEKDIIEYVRK-KLPAYKLPGGVVFV-DELPKTPNGKILRRKLRDIAKKL 533 (537)
T ss_pred EEEEecCC----------------CcCCHHHHHHHHHh-hCChhhccCeEEEe-ccCCCCCcchHHHHHHHHHHHhc
Confidence 99999975 23778999999998 69999999998875 78999999999999999999864
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=491.32 Aligned_cols=401 Identities=35% Similarity=0.529 Sum_probs=341.9
Q ss_pred hccccCCCcceEEeeCCCCcchhhhhhhhhhcccccCccc---c-cCCCCCCCCCceEEEEeccCCCCCccceecccHHH
Q 012673 15 LQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLR---S-LPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSAL 90 (458)
Q Consensus 15 ~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~ 90 (458)
++.+.+|.++++++.+++.... . .++..+-+...+.. . ...+....|+|++.|.|||||||.|||+.+||.|+
T Consensus 183 lkS~~lp~lthvi~~~ed~~~~-G--a~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~ 259 (596)
T KOG1177|consen 183 LKSELLPELTHVILADEDHPLP-G--AFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNF 259 (596)
T ss_pred ccccccccceEEEecCCCCcCC-C--ceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhh
Confidence 3457799999999888433211 1 12222222222111 1 12344567899999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEec-CCCChHHHHHHHHHhcceEEeechHHHHHHH
Q 012673 91 IVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLA 168 (458)
Q Consensus 91 ~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 168 (458)
+++.......+++...+++++..|++|++|. ...+.++..|+++|+. +.|++...+++|.++++|.++++|+++..|+
T Consensus 260 ~Nna~~vg~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dll 339 (596)
T KOG1177|consen 260 LNNARAVGARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLL 339 (596)
T ss_pred hhhHHHHHHHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHh
Confidence 9999999999999998999999999999995 7889999999999994 5699999999999999999999999999999
Q ss_pred HHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCC
Q 012673 169 TLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 248 (458)
Q Consensus 169 ~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (458)
+..+.... ..+++|.++.||+++|+++++.+.....--.+...||+||+++..+.....++...
T Consensus 340 n~~~~~~~--~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~-------------- 403 (596)
T KOG1177|consen 340 NIPQKQQV--DLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEE-------------- 403 (596)
T ss_pred cchhhccC--chhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHH--------------
Confidence 88776665 35799999999999999999999986632346678999999987776655544322
Q ss_pred CCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcE
Q 012673 249 NSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNV 323 (458)
Q Consensus 249 ~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l 323 (458)
...++|..+++.+..++|.+ -+..||||+||++.+.|||++++.|.+....+.||+|||++.++++|++
T Consensus 404 ------~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i 477 (596)
T KOG1177|consen 404 ------RIKSVGHLMDHYEAAIVDKDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTI 477 (596)
T ss_pred ------HHhhhhhcccccccccccCCCCccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcE
Confidence 22369999999999999975 4667999999999999999999999999999999999999999999999
Q ss_pred EEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHH
Q 012673 324 WLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSE 403 (458)
Q Consensus 324 ~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (458)
+++||.+|+|+.+|+||+|.|||+.|.+||.|.++.|+|++|++.|+.+||++.++++..+ ..+.+
T Consensus 478 ~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~--------------~~t~E 543 (596)
T KOG1177|consen 478 EIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEG--------------KTTAE 543 (596)
T ss_pred EEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccc--------------cccHH
Confidence 9999999999999999999999999999999999999999999999999999999987432 15689
Q ss_pred HHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhhcCCC
Q 012673 404 VLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPS 456 (458)
Q Consensus 404 ~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~~~~~ 456 (458)
+|+.+|+. ++..|++|++|+++ ++||+|.||||+|..+|++.+.+++-+-.
T Consensus 544 ~lKa~Ck~-klaHFKiPky~vf~-~~FPlT~tGKIqKFeir~~~k~~l~l~~~ 594 (596)
T KOG1177|consen 544 TLKAMCKG-KLAHFKIPKYFVFV-DEFPLTTTGKIQKFEIREMSKGHLGLFTV 594 (596)
T ss_pred HHHHHHhc-ccccccCCcEEEEe-ccCcccccccchhHHHHHHHHhhcceeee
Confidence 99999998 69999999999887 56999999999999999999988875543
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=512.13 Aligned_cols=396 Identities=72% Similarity=1.156 Sum_probs=325.8
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~ 140 (458)
...++++++++|||||||.||||+++|+++..+.......+++.++|+++..+|++|.+++..++.++..|+++++.+.+
T Consensus 168 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~ 247 (563)
T PLN02860 168 AWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLPKF 247 (563)
T ss_pred CCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEecCCC
Confidence 44679999999999999999999999999987777666778899999999999999999998888999999999999999
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.|+++++|++.++|+++..|++...........+++|.+++||+++++++.+.+++.|+++++++.||+||++
T Consensus 248 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~ 327 (563)
T PLN02860 248 DAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEAC 327 (563)
T ss_pred CHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccC
Confidence 99999999999999999999999999988654333223457899999999999999999999999889999999999997
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEeccccchhhhcCcCCCC
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 300 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~~~~~gy~~~~~~~~ 300 (458)
..++......+...........+..............++|+|++++++++++++.++.|||+++|++++.|||+++..+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~ 407 (563)
T PLN02860 328 SSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNSETA 407 (563)
T ss_pred cccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCCCCceeEEEEecCcccccccCCccccc
Confidence 65443322211100000000000000000011122346899999999999998889999999999999999999999998
Q ss_pred cccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecc
Q 012673 301 SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRE 380 (458)
Q Consensus 301 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~ 380 (458)
..+..+|||+|||+|+++++|+++++||++|+||++|++|+|.+||++|.+||+|.+++|++++++..++.+++++++++
T Consensus 408 ~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~ 487 (563)
T PLN02860 408 SVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRD 487 (563)
T ss_pred hhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhhcCCCCC
Q 012673 381 SWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458 (458)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~~~~~~~ 458 (458)
+..+..... .........+.++++++++++.|++|++|+.++++.++||+|++||++|+.|++++.+.++.+.++|
T Consensus 488 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~~ 563 (563)
T PLN02860 488 GWIWSDNEK--ENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLSHLQSLPSNL 563 (563)
T ss_pred ccccccccc--hhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHHHHHHHHhccccCC
Confidence 632211110 0000111245678999998745999999998877667899999999999999999999999999886
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-63 Score=502.47 Aligned_cols=349 Identities=36% Similarity=0.585 Sum_probs=309.3
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhc--CCCCceEEeccchhhHhhhHHHH-HHHhcCceEEecC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHIGGLSSAM-AMLMVGACHVFIP 138 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~--~~~~d~~~~~~p~~~~~g~~~~~-~~l~~G~~~v~~~ 138 (458)
++++|+++++|||||||.||||++||+++..+.......++ ++..|++++.+|++|.+|+...+ ..++.|+++++.+
T Consensus 168 ~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~ 247 (534)
T COG0318 168 VDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLS 247 (534)
T ss_pred CCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCC
Confidence 67899999999999999999999999999999888888888 89999999999999999997555 5589999999988
Q ss_pred --CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCC-CceEEEeCCCCCCHHHHHHHHhhCCCCceeeccc
Q 012673 139 --KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD-SVKKILNGGGGLPSELMKEATNSFPKAKLISAYG 215 (458)
Q Consensus 139 --~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~-~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG 215 (458)
.|++..++..+.++++|++.++|+++..|+......... .. ++|.+++||+++++++++++.+.|+...+++.||
T Consensus 248 ~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~--~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG 325 (534)
T COG0318 248 PEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDD--LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYG 325 (534)
T ss_pred CCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccc--cccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeec
Confidence 599999999999999999999999999988876554432 23 4999999999999999999999996568999999
Q ss_pred cccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCC-----CCccEEEEeccccch
Q 012673 216 MTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS-----SHVGRILTRGAHVML 290 (458)
Q Consensus 216 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~-----~~~Gel~v~g~~~~~ 290 (458)
+||+++.++...... . ....+++|.|+|+++++|+|++. |++|||+++||+++.
T Consensus 326 ~TE~~~~~~~~~~~~-~--------------------~~~~~~~G~~~pg~~v~Ivd~~~~~~~pg~vGei~irgp~v~~ 384 (534)
T COG0318 326 LTETSPVVTINPPDD-L--------------------LAKPGSVGRPLPGVEVRIVDPDGGEVLPGEVGEIWVRGPNVMK 384 (534)
T ss_pred ccccCceeecCCCch-h--------------------hhcCCcccccCCCcEEEEEeCCCCccCCCCceEEEEECchhhh
Confidence 999997665543322 1 01223479999999999999763 668999999999999
Q ss_pred hhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcc
Q 012673 291 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 370 (458)
Q Consensus 291 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 370 (458)
|||++++.|...+..+|||+|||+|++|++|+++++||.+|+|+++|+||+|.|||+++.+||.|.+++|++++++.+||
T Consensus 385 GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge 464 (534)
T COG0318 385 GYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGE 464 (534)
T ss_pred hhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCc
Confidence 99999999998776679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 371 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 371 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
.++|+++++++.. ...+.++|.++|+. .++.|++|+.++++ ++||+|++||++|+.||+.+..
T Consensus 465 ~~~a~v~~~~~~~--------------~~~~~~~i~~~~~~-~l~~~~~P~~v~~v-~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 465 RVVAVVVLKPGGD--------------AELTAEELRAFLRK-RLALYKVPRIVVFV-DELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred eEEEEEEEcCCCC--------------CCCCHHHHHHHHHh-hhhcccCCeEEEEe-CCCCCCCchhhhHHHHHHHHHh
Confidence 9999999987621 11368999999998 79999999988775 8899999999999999999988
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=478.44 Aligned_cols=344 Identities=27% Similarity=0.398 Sum_probs=298.3
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHH-HHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSL-AKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~ 138 (458)
..+++|+++++|||||||+||||+++|+.+..... .....+.+.++|++++..++.|++|.+ .++++|.+|+++++++
T Consensus 167 ~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~e 246 (528)
T COG0365 167 PLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYD 246 (528)
T ss_pred ccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeC
Confidence 36889999999999999999999999998765554 444577888999999999999999985 5889999999999876
Q ss_pred C--C-ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccc
Q 012673 139 K--F-ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYG 215 (458)
Q Consensus 139 ~--~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG 215 (458)
. + ++..+++.|+++++|.+++.|+.++.|.+... ....++++||.+.++|||++++.++++.+.+ +++|.+.||
T Consensus 247 g~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~d~~g 323 (528)
T COG0365 247 GRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL--GEPYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWILDIYG 323 (528)
T ss_pred CCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--cccccchhheeeeccCCCCCHHHHHHHHHHh-CCCEecccc
Confidence 3 2 38999999999999999999999999998754 2234578999999999999999999999999 799999999
Q ss_pred cccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEecc--cc
Q 012673 216 MTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGA--HV 288 (458)
Q Consensus 216 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~--~~ 288 (458)
+||++++...... + ...+ +.|.|+||+++.++|++ .++ |+|+++.+ ++
T Consensus 324 qTEtg~~~~~~~~--~---------------------~~~g-~~g~p~pG~~~~vvdd~g~~~~~~~-G~Lvi~~~~p~~ 378 (528)
T COG0365 324 QTETGMGFIAGRP--P---------------------VKNG-SSGLPLPGYAVRRVDDEGNPVPPGV-GELVVRLPWPGM 378 (528)
T ss_pred ccccCccccCCCC--C---------------------cCCC-CCCCCCCCceeEEECCCCCcCCCCc-eEEEEeCCCchh
Confidence 9999943332111 0 0122 35999999999999986 355 99999986 88
Q ss_pred chhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCC
Q 012673 289 MLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARL 368 (458)
Q Consensus 289 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 368 (458)
+.+||+++++..+.+.+. ||+|||.+++|+||+++++||.||+||+.|.+|.|.|||++|.+||+|.|++||++|++..
T Consensus 379 ~~~~w~d~er~~~~y~~~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~k 457 (528)
T COG0365 379 ALTYWNDPERYKEAYFGR-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGK 457 (528)
T ss_pred hhhhhCCHHHHHHHHhhc-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCC
Confidence 999999998888877665 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHH
Q 012673 369 TEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448 (458)
Q Consensus 369 ~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~ 448 (458)
|+.++|||+++++.... ...++|++++++ .+.+++.|+.+.++ ++||||.||||.|+.||+.+.
T Consensus 458 g~~v~afVvL~~g~~~~--------------~L~~ei~~~vr~-~~~~~~~p~~i~fv-~~LPkT~sGKI~R~~lr~~~~ 521 (528)
T COG0365 458 GQIVLAFVVLAAGVEPN--------------ELAEEIRRHVAR-NIGPHAIPRKIRFV-DELPKTASGKIQRRLLRKILH 521 (528)
T ss_pred CcEEEEEEEecCCCChH--------------HHHHHHHHHHHh-ccCcccCCceEEEe-cCCCCCCcccHHHHHHHHHHh
Confidence 99999999999885211 236788999977 56679999998875 789999999999999999988
Q ss_pred H
Q 012673 449 S 449 (458)
Q Consensus 449 ~ 449 (458)
+
T Consensus 522 ~ 522 (528)
T COG0365 522 K 522 (528)
T ss_pred h
Confidence 5
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=503.05 Aligned_cols=368 Identities=27% Similarity=0.383 Sum_probs=298.6
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFE 141 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~ 141 (458)
..++|+++|+|||||||.||||++||+++..+.......+++.++|++++++|++|++++..++.+++.|+++++.+. +
T Consensus 218 ~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~-~ 296 (651)
T PLN02736 218 PKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQG-D 296 (651)
T ss_pred CCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCC-C
Confidence 468999999999999999999999999999888887788889999999999999999999888889999999988765 8
Q ss_pred hHHHHHHHHHhcceEEeechHHHHHHHHHHHhh-------------------------ccc---------------cCCC
Q 012673 142 SKSALEAVEQHCVTSLITVPAIMADLATLIRVK-------------------------KTW---------------KGRD 181 (458)
Q Consensus 142 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------~~~---------------~~~~ 181 (458)
+..+++.|+++++|+++++|.++..+.+..... ... ...+
T Consensus 297 ~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 376 (651)
T PLN02736 297 NLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGG 376 (651)
T ss_pred HHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcC
Confidence 889999999999999999999998887642100 000 0014
Q ss_pred CceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecc
Q 012673 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGK 261 (458)
Q Consensus 182 ~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 261 (458)
++|.+++||+++++++.+.+++.+ ++++++.||+||+++.++...... ...+++|+
T Consensus 377 ~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~~~-----------------------~~~~~vG~ 432 (651)
T PLN02736 377 RVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETSCVISGMDEGD-----------------------NLSGHVGS 432 (651)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechHHhchheeccCCCC-----------------------CCCCccCC
Confidence 799999999999999999999888 789999999999986544322110 02236999
Q ss_pred cCCCceEEEecCC---------CCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccce
Q 012673 262 PAPHVELKVCSDG---------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGR 332 (458)
Q Consensus 262 p~~~~~~~i~d~~---------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~ 332 (458)
|+|+++++++|.+ .++.|||+++|++++.|||++++.+...++.+|||+|||+|++++||+++++||+||+
T Consensus 433 p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ 512 (651)
T PLN02736 433 PNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNI 512 (651)
T ss_pred ccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhh
Confidence 9999999999832 2346999999999999999999999988888999999999999999999999999999
Q ss_pred eee-CceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecccc--ccccccccccchhhhhhhh--------
Q 012673 333 IKS-GGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESW--QWSESNCDQSSKNKELLLS-------- 401 (458)
Q Consensus 333 i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~--~~~~~~~~~~~~~~~~~~~-------- 401 (458)
||+ +|++|+|.+||++|.+||.|.+++|++ +.+++.++|+|++.++. .+........... .+...
T Consensus 513 ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g---~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i 588 (651)
T PLN02736 513 FKLAQGEYIAPEKIENVYAKCKFVAQCFVYG---DSLNSSLVAVVVVDPEVLKAWAASEGIKYEDL-KQLCNDPRVRAAV 588 (651)
T ss_pred eEcCCCcEechHHHHHHHhcCCCeeEEEEEe---cCCCceeEEEEEeCHHHHHHHHHHcCCCccCH-HHHhcCHHHHHHH
Confidence 996 799999999999999999999999998 24578899999987642 1100000000000 01111
Q ss_pred HHHHHHHhhhcccccccCCeEEEEeeCCCC-----CCCcccchHHHHHHHHHHHhhcCCCCC
Q 012673 402 SEVLRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPSNL 458 (458)
Q Consensus 402 ~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~~~~~~ 458 (458)
.+++.+..++++|+.|++|+.+.++.+.++ +|++||++|+.+++.|++.|++||++|
T Consensus 589 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~~~y~~~ 650 (651)
T PLN02736 589 LADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMYAEL 650 (651)
T ss_pred HHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHHHHHhhc
Confidence 122333333446999999999998765543 899999999999999999999999875
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=429.34 Aligned_cols=391 Identities=26% Similarity=0.398 Sum_probs=337.0
Q ss_pred hhhhhhccccCCCcceEEeeCCCCcchhhhhhhhhhcccccCcccccCCCCCCCCCceEEEEeccCCCCCccceecccHH
Q 012673 10 SWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSA 89 (458)
Q Consensus 10 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~ 89 (458)
+.+.++ ..++|.++++++.++........ ..+. .......+.+..+++++|+++.+.||||.||-|+.+|++
T Consensus 142 ~~ar~~-~a~~~tlr~v~v~ge~~~~~~~~-~~~~------~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~D 213 (542)
T COG1021 142 PFAREL-VAKHPTLRHVIVAGEAEHPSVLE-AALC------HPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHND 213 (542)
T ss_pred HHHHHH-HhhCCcceEEEEccCCCCcchhh-hhhh------CccccCCcCCCCCCCceEEEEecCCCCCCCccccccccc
Confidence 334444 34668999999886653221111 1111 111111222345788999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCceEEeccchhhHhhhH--HHHHHHhcCceEEecCCCChHHHHHHHHHhcceEEeechHHHHHH
Q 012673 90 LIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS--SAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADL 167 (458)
Q Consensus 90 ~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~--~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 167 (458)
+..+.....+.++++..+++++.+|..|-+.+. ..++.+++|+++|+.+..++...+.+|+++++|+...+|.+...+
T Consensus 214 Y~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LW 293 (542)
T COG1021 214 YYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLW 293 (542)
T ss_pred eeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHH
Confidence 999999999999999999999999999998884 689999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccC
Q 012673 168 ATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 247 (458)
Q Consensus 168 ~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (458)
++.++.... +++|||.+-+||+.+++.+.+++...+ +|.+-+.|||.|.-.. +....++...
T Consensus 294 lqa~e~~~~--~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQQVFGMAEGLvn--yTRLDDp~E~------------- 355 (542)
T COG1021 294 LQAAEWERA--DLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQVFGMAEGLVN--YTRLDDPPEI------------- 355 (542)
T ss_pred HHhhhcccC--CchheeEEeecCcccCHHHHhhchhhh-CchHHHHhhhhhhhhc--ccccCCchHh-------------
Confidence 998876544 578999999999999999999999999 8999999999997543 3333332211
Q ss_pred CCCCCCCCceEecccC-CCceEEEecCC-----CCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCCC
Q 012673 248 PNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGG 321 (458)
Q Consensus 248 ~~~~~~~~~~~~G~p~-~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g 321 (458)
...+.|+|+ |.-+++|+|.+ +|++|+|.++||..++|||+.++.|...|+.+|+|+|||+++++++|
T Consensus 356 -------i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dG 428 (542)
T COG1021 356 -------IIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDG 428 (542)
T ss_pred -------eeecCCCcCCCcceeEEecCCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCc
Confidence 223589998 78899999987 79999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhh
Q 012673 322 NVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLS 401 (458)
Q Consensus 322 ~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (458)
++.+.||.+|+|+.+|++|..+|||+.|..||.|.++++|.++|.-.||+.||+|++++. ..+
T Consensus 429 yl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~-----------------~~~ 491 (542)
T COG1021 429 YLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEP-----------------PLR 491 (542)
T ss_pred eEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCC-----------------CCC
Confidence 999999999999999999999999999999999999999999999999999999999875 267
Q ss_pred HHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHh
Q 012673 402 SEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451 (458)
Q Consensus 402 ~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 451 (458)
..++++++.+++++.||+|+++.++ +.||+|+-|||+|+.||+.+....
T Consensus 492 ~~qlr~~L~~~GlAa~K~PDrie~v-~~~P~T~VGKIdKk~Lr~~l~~~~ 540 (542)
T COG1021 492 AAQLRRFLRERGLAAFKLPDRIEFV-DSLPLTAVGKIDKKALRRRLASRL 540 (542)
T ss_pred HHHHHHHHHHcchhhhcCCcceeec-ccCCCcccccccHHHHHHHhhhhc
Confidence 8899999999999999999998875 789999999999999999887643
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-59 Score=483.62 Aligned_cols=368 Identities=24% Similarity=0.329 Sum_probs=288.1
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhh-----cCCCCceEEeccchhhHhhhHHHHHHHhcCceEEe
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVF 136 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~ 136 (458)
..++|+++|+|||||||.||||++||+++..........+ ++.++|++++++|++|++++...+..+..|+++++
T Consensus 220 ~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~ 299 (666)
T PLN02614 220 KKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGF 299 (666)
T ss_pred CCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEE
Confidence 4679999999999999999999999999987765544433 56789999999999999998666677889999888
Q ss_pred cCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhc-------------------------------c---------
Q 012673 137 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK-------------------------------T--------- 176 (458)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------------~--------- 176 (458)
.+ +++..+++.|++++||+++++|+++..+........ .
T Consensus 300 ~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (666)
T PLN02614 300 WR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFN 378 (666)
T ss_pred eC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHH
Confidence 65 589999999999999999999999998875332100 0
Q ss_pred ---ccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCC
Q 012673 177 ---WKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQ 253 (458)
Q Consensus 177 ---~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (458)
....+++|.+++||+++++++ ..+.+.+++++++++||+||+++..+.....+ .
T Consensus 379 ~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~--~-------------------- 435 (666)
T PLN02614 379 KVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSLPDE--L-------------------- 435 (666)
T ss_pred HHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeecccc--C--------------------
Confidence 000158999999999999875 56666675689999999999875433221100 0
Q ss_pred CCceEecccCCCceEEEecC-C-------CCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEE
Q 012673 254 PQGVCVGKPAPHVELKVCSD-G-------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWL 325 (458)
Q Consensus 254 ~~~~~~G~p~~~~~~~i~d~-~-------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~ 325 (458)
...+++|+|+|+++++|+|. + .|+.|||+++|++++.|||++++.|.+.+ .+|||+|||+|++|+||+|+|
T Consensus 436 ~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i 514 (666)
T PLN02614 436 DMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDGWLHTGDVGEWQPNGSMKI 514 (666)
T ss_pred CcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-ccCCcccceEEEEcCCCCEEE
Confidence 01236999999999999872 2 36789999999999999999999999888 489999999999999999999
Q ss_pred Eeeccceeee-CceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecccc--ccccccccccc------hhh
Q 012673 326 VGRRNGRIKS-GGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESW--QWSESNCDQSS------KNK 396 (458)
Q Consensus 326 ~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~--~~~~~~~~~~~------~~~ 396 (458)
+||+||+||. +|++|+|.+||++|.+||.|.+++|+|... ...++|+|++.... .|..+...... ...
T Consensus 515 ~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~---~~~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (666)
T PLN02614 515 IDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSF---ESFLVAIANPNQQILERWAAENGVSGDYNALCQNEK 591 (666)
T ss_pred EEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCC---cceEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHH
Confidence 9999999995 799999999999999999999999999643 23588999887653 11111111000 000
Q ss_pred hhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCC-----CCCcccchHHHHHHHHHHHhhcCCCC
Q 012673 397 ELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPSN 457 (458)
Q Consensus 397 ~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~~~~~ 457 (458)
....-.+++.+..+++.|+.|++++.|.++.++|- +|+|+|++|..+++.|++.|++||++
T Consensus 592 ~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ly~~ 657 (666)
T PLN02614 592 AKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKT 657 (666)
T ss_pred HHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 00011223333334457999999999998877774 99999999999999999999999974
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-58 Score=466.90 Aligned_cols=344 Identities=26% Similarity=0.402 Sum_probs=288.8
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEecC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIP- 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~- 138 (458)
...++|+++|+|||||||.||||+++|+++..+.......+++..+|++++++|++|.+|+. .++.++..|+++++..
T Consensus 179 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~ 258 (539)
T PRK06334 179 DKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYN 258 (539)
T ss_pred CCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecC
Confidence 35679999999999999999999999999988877777778889999999999999999984 5678899999998875
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..+++.|+++++|++.++|+++..|++...... ...+++|.+++||+++++++.+.+.+.|+++.+++.||+||
T Consensus 259 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE 336 (539)
T PRK06334 259 PLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE--SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE 336 (539)
T ss_pred CCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc--cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccc
Confidence 4899999999999999999999999999987654332 24578999999999999999999999998899999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy 292 (458)
++..++....... ....++|.|+++++++++|++ .|+.|||+++|++++.||
T Consensus 337 ~~~~~~~~~~~~~----------------------~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY 394 (539)
T PRK06334 337 CSPVITINTVNSP----------------------KHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGY 394 (539)
T ss_pred cCceEEeccCCCC----------------------CCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccc
Confidence 9865543221110 012258999999999999854 478999999999999999
Q ss_pred hcCcCCCCcc-cCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcce------EEEEeecC
Q 012673 293 WDQFLAKPSV-STGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG------IVVVGIAN 365 (458)
Q Consensus 293 ~~~~~~~~~~-~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~------~~v~~~~~ 365 (458)
|+++..+... .++++||+|||+|+++++|+++++||.+|+||++|++|+|.|||++|.+||+|.+ ++|+++++
T Consensus 395 ~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~ 474 (539)
T PRK06334 395 LGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPG 474 (539)
T ss_pred cCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCC
Confidence 9998865532 2457899999999999999999999999999999999999999999999999998 77888775
Q ss_pred CCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 366 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 366 ~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
.. ..++++++.. .+.+++++++++..++.|++|+.+.++ ++||+|++||++|+.|++
T Consensus 475 ~~--~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~ 531 (539)
T PRK06334 475 EK--VRLCLFTTFP--------------------TSISEVNDILKNSKTSSILKISYHHQV-ESIPMLGTGKPDYCSLNA 531 (539)
T ss_pred Cc--eEEEEEEecc--------------------CChHHHHHHHHhcCCcccccchheeee-cccccccCCcccHHHHHH
Confidence 32 3444554421 125678889987447899999987765 789999999999999998
Q ss_pred HHHHHh
Q 012673 446 EVMSHL 451 (458)
Q Consensus 446 ~~~~~~ 451 (458)
.....+
T Consensus 532 ~~~~~~ 537 (539)
T PRK06334 532 LAKSLF 537 (539)
T ss_pred HHHHhh
Confidence 866544
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-58 Score=475.83 Aligned_cols=369 Identities=22% Similarity=0.263 Sum_probs=292.3
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhh--cCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV--GYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 138 (458)
..+|+|+|+|+|||||||.||||++||+|+.+++....... .....|++++++|++|++++...+.+++.|+++++.+
T Consensus 300 ~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~ 379 (746)
T PTZ00342 300 NEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWS 379 (746)
T ss_pred CCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeC
Confidence 34689999999999999999999999999987765543321 2335689999999999999977788899999999877
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhh--------c--------------------------------ccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVK--------K--------------------------------TWK 178 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------~--------------------------------~~~ 178 (458)
. ++..+++.|++++||+++++|.++..+....... . ...
T Consensus 380 ~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~ 458 (746)
T PTZ00342 380 K-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDK 458 (746)
T ss_pred C-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh
Confidence 5 8999999999999999999999999987632110 0 000
Q ss_pred CCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceE
Q 012673 179 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVC 258 (458)
Q Consensus 179 ~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (458)
...++|.+++||+++++++.+.+++.+ +++++++||+||+++.++...... ...++
T Consensus 459 lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~~~~-----------------------~~~gs 514 (746)
T PTZ00342 459 VNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQHADD-----------------------NNTES 514 (746)
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeeccCCC-----------------------CCccc
Confidence 125899999999999999999999888 799999999999976554322110 02337
Q ss_pred ecccC-CCceEEEecCC------CCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccc
Q 012673 259 VGKPA-PHVELKVCSDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNG 331 (458)
Q Consensus 259 ~G~p~-~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d 331 (458)
+|.|+ |+++++++|.+ .++.|||+++|++++.|||++++.|.+.++.+|||+|||+|++++||+++++||++|
T Consensus 515 vG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kd 594 (746)
T PTZ00342 515 IGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKG 594 (746)
T ss_pred ccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCC
Confidence 99998 99999998732 335799999999999999999999999998899999999999999999999999999
Q ss_pred eee-eCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecccc--cccccc------ccccchhhh----h
Q 012673 332 RIK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESW--QWSESN------CDQSSKNKE----L 398 (458)
Q Consensus 332 ~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~--~~~~~~------~~~~~~~~~----~ 398 (458)
+|| .+|++|+|.+||++|.+||.|.+++|+|.. ....++|+|++.... .|.++. ........+ +
T Consensus 595 lIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~---~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~ 671 (746)
T PTZ00342 595 LVKLSQGEYIETDMLNNLYSQISFINFCVVYGDD---SMDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDE 671 (746)
T ss_pred eEEeCCCEEEchHHHHHHHhcCCCccEEEEEccC---CccccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhh
Confidence 999 589999999999999999999999999852 234689999987653 122111 000011110 0
Q ss_pred hhh--------HHHHHHHhhhcccccccCCeEEEEeeCCCC----CCCcccchHHHHHHHHH---HHhhcCCCC
Q 012673 399 LLS--------SEVLRQHCREKNLTGFKAPRLFVLWRKPFP----LTSTGKIRRDEVRREVM---SHLKSLPSN 457 (458)
Q Consensus 399 ~~~--------~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP----~t~~GKv~r~~l~~~~~---~~~~~~~~~ 457 (458)
... .+++.+..++..|+.|.+++.|.++.++|. +|||.|++|+.+.+.|+ +.|+++|.+
T Consensus 672 ~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~i~~i~~~y~~ 745 (746)
T PTZ00342 672 TINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFFIDQVKKIYKN 745 (746)
T ss_pred hhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 111 122333323347999999999998877774 99999999999999999 777888865
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=451.02 Aligned_cols=425 Identities=24% Similarity=0.361 Sum_probs=323.8
Q ss_pred cccchhhhhhcc-ccCCCcceEEeeCCCCcchhhh-----hhhhhhcccccCcccccC-CCCCCCCCceEEEEeccCCCC
Q 012673 6 ESSDSWYLELQH-TAIPSLRWHVSLGSSSSDFVNK-----RDMLTADILKGYSLRSLP-FTHSWAPEGAVIICFTSGTTG 78 (458)
Q Consensus 6 ~~~~~~~~~~~~-~~~p~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG 78 (458)
+..++.+.+... .++|.||.+|+++...+..... ..+..++++......... +.....|+|.|.|+|||||||
T Consensus 189 ~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG 268 (691)
T KOG1256|consen 189 AKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTG 268 (691)
T ss_pred HHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCC
Confidence 566555555422 2589999999998765433221 123444444433322111 113557999999999999999
Q ss_pred CccceecccHHHHHHHHHHHH--hh----cCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCChHHHHHHHHHh
Q 012673 79 SPKGVVISHSALIVQSLAKIA--IV----GYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQH 152 (458)
Q Consensus 79 ~PK~v~~sh~~~~~~~~~~~~--~~----~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~ 152 (458)
.|||||+||+|+.+....... .. .....|++++++|+.|++....-...+..|+++-+... |+..+.+.|++.
T Consensus 269 ~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~g-D~~~l~~dlk~l 347 (691)
T KOG1256|consen 269 NPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARG-DILKLTDDLKEL 347 (691)
T ss_pred CCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecC-ChHHHHHHHHHh
Confidence 999999999999875443111 11 22346999999999999999777777799999988875 999999999999
Q ss_pred cceEEeechHHHHHHHHHHHhh--------------------------ccc-----------------cCCCCceEEEeC
Q 012673 153 CVTSLITVPAIMADLATLIRVK--------------------------KTW-----------------KGRDSVKKILNG 189 (458)
Q Consensus 153 ~~t~~~~~P~~~~~l~~~~~~~--------------------------~~~-----------------~~~~~lr~i~~~ 189 (458)
+||.+.++|.++.++.+.++.. +.. .....+|.+++|
T Consensus 348 kPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sG 427 (691)
T KOG1256|consen 348 KPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISG 427 (691)
T ss_pred CCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEec
Confidence 9999999999999876543211 000 012468999999
Q ss_pred CCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEE
Q 012673 190 GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELK 269 (458)
Q Consensus 190 G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 269 (458)
++|+++++...++..+ ++++.++||+||+++.++.....+. ..+++|.|+|+++++
T Consensus 428 aAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~~~d~-----------------------~lgsvG~p~p~~~vK 483 (691)
T KOG1256|consen 428 AAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTLPGDN-----------------------VLGSVGPPVPGNEVK 483 (691)
T ss_pred CCCCCHHHHHHHHHhc-CceeeecccccccCCceEeccCCCC-----------------------CCCCcCCcccCceEE
Confidence 9999999999999998 8999999999999966665544332 233799999999999
Q ss_pred EecCC------CCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceee-eCceeeCc
Q 012673 270 VCSDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVYP 342 (458)
Q Consensus 270 i~d~~------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~ 342 (458)
++|.. .+..||||++|+++|.|||++|++|.+.++.+||+||||+|+|+++|.|.++||++++|| ..|++|.|
T Consensus 484 L~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaP 563 (691)
T KOG1256|consen 484 LVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAP 563 (691)
T ss_pred EechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCCCccCh
Confidence 97753 455799999999999999999999999999999999999999999999999999999999 79999999
Q ss_pred HHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEeccccc--ccccccccc--chh----hhhhhhHHHHHHHhhhccc
Q 012673 343 EEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQ--WSESNCDQS--SKN----KELLLSSEVLRQHCREKNL 414 (458)
Q Consensus 343 ~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~--~~~~~~~~~--~~~----~~~~~~~~~l~~~~~~~~l 414 (458)
+.||++..+.+.|.+.+|.+-. ....++|+|+++.... |........ .+. ........++.+..+++.|
T Consensus 564 e~IEniy~~~~~V~qi~V~g~s---~~~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l 640 (691)
T KOG1256|consen 564 EKIENIYKRSLPVQQIFVLGDS---LRSFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGL 640 (691)
T ss_pred HHHHHHHhcCCceEEEEEECCc---chhcEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999843 3457999999976642 222111110 000 0011223444444455578
Q ss_pred ccccCCeEEEEeeCCCC-----CCCcccchHHHHHHHHHHHhhcCCCCC
Q 012673 415 TGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPSNL 458 (458)
Q Consensus 415 ~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~~~~~~ 458 (458)
..+...+.+.+..++|- +|||-|++|..+.+.|+++|++||+.+
T Consensus 641 ~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~mY~~~ 689 (691)
T KOG1256|consen 641 KGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDELYKEI 689 (691)
T ss_pred cChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHHHHhhc
Confidence 88888888877666553 899999999999999999999999863
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=461.76 Aligned_cols=351 Identities=19% Similarity=0.173 Sum_probs=279.7
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-C
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-F 140 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~ 140 (458)
.+++|+++|+|||||||.||||++||+++..+.......+++..+|++++.+|++|.+++..++.+++.|+++++.+. +
T Consensus 116 ~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~ 195 (499)
T PLN03051 116 APVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAP 195 (499)
T ss_pred CCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCC
Confidence 356899999999999999999999999987666555566788899999999999999998778889999999998874 7
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCC-CCceeeccccccC
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP-KAKLISAYGMTET 219 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~~i~~~YG~tE~ 219 (458)
++..+++.|+++++|++.++|+++..|++...........++||.+++||+++++++.+++++.++ ++++++.||+||+
T Consensus 196 ~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~ 275 (499)
T PLN03051 196 LGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTEL 275 (499)
T ss_pred CcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccc
Confidence 889999999999999999999999998764320011123478999999999999999987776331 4789999999998
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CC--CccEEEEecccc--ch
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SS--HVGRILTRGAHV--ML 290 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~--~~Gel~v~g~~~--~~ 290 (458)
+..++....... ...+++|+|.++++++|+|++ .| ++|||+++|+.+ +.
T Consensus 276 ~~~~~~~~~~~~----------------------~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~Gel~v~g~~~~~~~ 333 (499)
T PLN03051 276 ASGYISSTLLQP----------------------QAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVGEVALAPPMLGASD 333 (499)
T ss_pred cceeecccccCC----------------------CCCccccCCCCCceEEEECCCCCCCCCCCCcceEEEEecCcCCCCc
Confidence 643321110000 012368999999999999975 33 479999999976 58
Q ss_pred hhhcCcCCCCcccCC--------CceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhc-CcCcceEEEE
Q 012673 291 RYWDQFLAKPSVSTG--------EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ-HPGIIGIVVV 361 (458)
Q Consensus 291 gy~~~~~~~~~~~~~--------~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~~~v~ 361 (458)
|||+++. +...+++ .+||+|||+|++|+||+++++||+||+||++|+||+|.|||++|.+ ||+|.+++|+
T Consensus 334 gy~~~~~-~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavv 412 (499)
T PLN03051 334 RLLNADH-DKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAV 412 (499)
T ss_pred cccCCcc-cceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEE
Confidence 9997653 3322222 2379999999999999999999999999999999999999999996 9999999999
Q ss_pred eecCCCCc-ceEEEEE---EeccccccccccccccchhhhhhhhHHHHHHHh----hhcccccccCCeEEEEeeCCCCCC
Q 012673 362 GIANARLT-EMVVACV---RLRESWQWSESNCDQSSKNKELLLSSEVLRQHC----REKNLTGFKAPRLFVLWRKPFPLT 433 (458)
Q Consensus 362 ~~~~~~~~-~~~~a~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~p~~~~~~~~~lP~t 433 (458)
+++++.++ +.++|+| +++++.. ..+.++++++| ++ .|++++.|..+++ .++||+|
T Consensus 413 g~~d~~~g~~~~~a~v~~~v~~~~~~---------------~~~~~~l~~~~~~~l~~-~l~~~~~~~~i~~-v~~lP~t 475 (499)
T PLN03051 413 GVAPPDGGPELLVIFLVLGEEKKGFD---------------QARPEALQKKFQEAIQT-NLNPLFKVSRVKI-VPELPRN 475 (499)
T ss_pred EecCCCCCceEEEEEEEcceeccccc---------------ccchHHHHHHHHHHHHh-hcCCccCCceEEE-cCCCCCC
Confidence 99999888 6888988 6665410 02234555554 44 5777666666555 4889999
Q ss_pred CcccchHHHHHHHHHHHhh
Q 012673 434 STGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 434 ~~GKv~r~~l~~~~~~~~~ 452 (458)
++||++|+.|++.+.+.++
T Consensus 476 ~~GKi~r~~L~~~~~~~~~ 494 (499)
T PLN03051 476 ASNKLLRRVLRDQLKKELS 494 (499)
T ss_pred CCccHHHHHHHHHHHHhhc
Confidence 9999999999998877765
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-58 Score=476.48 Aligned_cols=368 Identities=24% Similarity=0.299 Sum_probs=288.7
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhc-----CCCCceEEeccchhhHhhhHHHHHHHhcCceEEe
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG-----YGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVF 136 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~-----~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~ 136 (458)
..++|+++|+|||||||.||||++||+++..+.......++ +.++|++++++|++|++++...+.+++.|+++++
T Consensus 217 ~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~ 296 (660)
T PLN02861 217 KQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGF 296 (660)
T ss_pred cCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEE
Confidence 46899999999999999999999999999877665544443 4678999999999999998666668999999888
Q ss_pred cCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhh----------------------------------ccc-----
Q 012673 137 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVK----------------------------------KTW----- 177 (458)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------------~~~----- 177 (458)
.+ +++..+++.|++++||+++++|.++..|....... ...
T Consensus 297 ~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (660)
T PLN02861 297 WQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFD 375 (660)
T ss_pred eC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHH
Confidence 74 68999999999999999999999999886521100 000
Q ss_pred ----cCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCC
Q 012673 178 ----KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQ 253 (458)
Q Consensus 178 ----~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (458)
....++|.+++||+++++++.+ +.+.++...+++.||+||+++.++...... .
T Consensus 376 ~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~--~-------------------- 432 (660)
T PLN02861 376 KIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIANV--F-------------------- 432 (660)
T ss_pred HHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeeccccc--C--------------------
Confidence 0014799999999999999754 556664457999999999976443221110 0
Q ss_pred CCceEecccCCCceEEEecC-C-------CCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEE
Q 012673 254 PQGVCVGKPAPHVELKVCSD-G-------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWL 325 (458)
Q Consensus 254 ~~~~~~G~p~~~~~~~i~d~-~-------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~ 325 (458)
...+++|+|+|+++++++|. + .++.|||+++|++++.|||++++.|.+.+ .+|||+|||+|++|+||+++|
T Consensus 433 ~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i 511 (660)
T PLN02861 433 SMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAMKI 511 (660)
T ss_pred CCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-hccCcccCceEEECCCCcEEE
Confidence 01236999999999999872 1 24579999999999999999999998888 489999999999999999999
Q ss_pred Eeeccceeee-CceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecccc--ccccccccccch------hh
Q 012673 326 VGRRNGRIKS-GGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESW--QWSESNCDQSSK------NK 396 (458)
Q Consensus 326 ~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~--~~~~~~~~~~~~------~~ 396 (458)
+||+||+||. +|++|+|.+||++|.+||.|.+++|++.+ .++.++|+|++.... .+..+....... ..
T Consensus 512 ~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~---~~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~ 588 (660)
T PLN02861 512 IDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNS---FESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLK 588 (660)
T ss_pred EeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecC---CcceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHH
Confidence 9999999995 89999999999999999999999999975 346799999987542 121111100000 00
Q ss_pred hhhhhHHHHHHHhhhcccccccCCeEEEEeeCCC-----CCCCcccchHHHHHHHHHHHhhcCCCC
Q 012673 397 ELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF-----PLTSTGKIRRDEVRREVMSHLKSLPSN 457 (458)
Q Consensus 397 ~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l-----P~t~~GKv~r~~l~~~~~~~~~~~~~~ 457 (458)
....-.+++.+..++..++.|.+++.+.+..++| .+|+++|++|+.+++.|++.|++||++
T Consensus 589 ~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~lY~~ 654 (660)
T PLN02861 589 ARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLYSE 654 (660)
T ss_pred HHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 1111233344444444699999999988877788 899999999999999999999999975
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-57 Score=465.30 Aligned_cols=338 Identities=28% Similarity=0.446 Sum_probs=294.4
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCCh
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFES 142 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~ 142 (458)
.+++.++++|||||||.||+|+++|+++..........+++..+|++++.+|++|.+|+..++.++..|+++++...+++
T Consensus 205 ~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~ 284 (549)
T PRK07788 205 PPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRRRFDP 284 (549)
T ss_pred CCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEECCCCCH
Confidence 45788999999999999999999999998887777778888999999999999999999878889999999999888999
Q ss_pred HHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccc
Q 012673 143 KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSS 222 (458)
Q Consensus 143 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 222 (458)
..+++.++++++|+++++|+++..+++...........+++|.+++||+++++++.+.+.+.| ++.+++.||+||++..
T Consensus 285 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~ 363 (549)
T PRK07788 285 EATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYGSTEVAFA 363 (549)
T ss_pred HHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHh-CccceeccCcchhchh
Confidence 999999999999999999999999987654311222457899999999999999999999998 6889999999998754
Q ss_pred eeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhcCcC
Q 012673 223 LTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWDQFL 297 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~~~~ 297 (458)
...... +.. ....++|+|+++++++++|++ .|+.|||+++|++++.||++++.
T Consensus 364 ~~~~~~-~~~---------------------~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~ 421 (549)
T PRK07788 364 TIATPE-DLA---------------------EAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTDGRD 421 (549)
T ss_pred hccChh-hhh---------------------hcCCCcccCCCCcEEEEECCCcCCCCCCCeEEEEEeCCCccccccCCCc
Confidence 332110 000 012358999999999999875 57889999999999999998876
Q ss_pred CCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEE
Q 012673 298 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVR 377 (458)
Q Consensus 298 ~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~ 377 (458)
.. ..+|||+|||+++++++|++++.||+||+||++|++|+|.+||++|.+||+|.+++|++++++..++.++++++
T Consensus 422 ~~----~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv 497 (549)
T PRK07788 422 KQ----IIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVV 497 (549)
T ss_pred cc----ccCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEE
Confidence 52 24689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 378 LRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
++++. ..+.+++++++++ .|++|++|+.++++ ++||+|++||++|+.|++
T Consensus 498 ~~~~~----------------~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~ 547 (549)
T PRK07788 498 KAPGA----------------ALDEDAIKDYVRD-NLARYKVPRDVVFL-DELPRNPTGKVLKRELRE 547 (549)
T ss_pred eCCCC----------------CCCHHHHHHHHHH-hhhcCCCCcEEEEe-CCCCCCCCcCEeHHHhhc
Confidence 87642 2456889999998 69999999988875 789999999999999975
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-57 Score=473.47 Aligned_cols=353 Identities=22% Similarity=0.228 Sum_probs=296.2
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHH-HHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQ-SLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~-~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 139 (458)
++++|+++|+|||||||.||||+++|++++.. .......++++++|++++.+|++|++|. ..++.+|+.|+++++.+.
T Consensus 272 ~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~ 351 (666)
T PLN02654 272 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEG 351 (666)
T ss_pred cCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECC
Confidence 46899999999999999999999999997643 3455567789999999999999999987 457889999999998863
Q ss_pred ----CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCC--Cceeec
Q 012673 140 ----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPK--AKLISA 213 (458)
Q Consensus 140 ----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~--~~i~~~ 213 (458)
+++..+++.|+++++|++.++|++++.|.+..........+++||.++++|+++++++++++.+.++. +++.+.
T Consensus 352 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~ 431 (666)
T PLN02654 352 APNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDT 431 (666)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceecc
Confidence 57899999999999999999999999998764322222345799999999999999999999999843 789999
Q ss_pred cccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEec--c
Q 012673 214 YGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRG--A 286 (458)
Q Consensus 214 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g--~ 286 (458)
||+||+++....... ... ....+++|.|+++++++|+|++ .++.|||++++ |
T Consensus 432 yg~TE~g~~~~~~~~---~~~------------------~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~Gel~v~~~~p 490 (666)
T PLN02654 432 WWQTETGGFMITPLP---GAW------------------PQKPGSATFPFFGVQPVIVDEKGKEIEGECSGYLCVKKSWP 490 (666)
T ss_pred ccccccCCeeeccCC---CCC------------------CCCCCccCCCCCCceEEEECCCCCCCCCCCceEEEEcCCCc
Confidence 999999864432111 000 0123369999999999999875 35679999999 7
Q ss_pred ccchhhhcCcCCCCcccC--CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeec
Q 012673 287 HVMLRYWDQFLAKPSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 364 (458)
Q Consensus 287 ~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 364 (458)
+++.|||++++.+...+. .+|||+|||++++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++
T Consensus 491 ~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~ 570 (666)
T PLN02654 491 GAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIE 570 (666)
T ss_pred hhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeE
Confidence 899999999887665432 378999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHH
Q 012673 365 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444 (458)
Q Consensus 365 ~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~ 444 (458)
++..++.++++|+++++.... ....++|++++++ .|++|++|+.++++ ++||+|++||++|+.|+
T Consensus 571 d~~~ge~~~a~Vvl~~~~~~~-------------~~l~~~l~~~~~~-~L~~~~~P~~i~~v-~~lP~T~sGKi~r~~l~ 635 (666)
T PLN02654 571 HEVKGQGIYAFVTLVEGVPYS-------------EELRKSLILTVRN-QIGAFAAPDKIHWA-PGLPKTRSGKIMRRILR 635 (666)
T ss_pred cCCCCeEEEEEEEECCCCCCC-------------HHHHHHHHHHHHH-hCCCCcCCCEEEEC-CCCCCCCCcCchHHHHH
Confidence 999999999999998763200 0124578899998 69999999988775 78999999999999999
Q ss_pred HHHHHH
Q 012673 445 REVMSH 450 (458)
Q Consensus 445 ~~~~~~ 450 (458)
+.+...
T Consensus 636 ~~~~~~ 641 (666)
T PLN02654 636 KIASRQ 641 (666)
T ss_pred HHHcCC
Confidence 998653
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=470.37 Aligned_cols=356 Identities=19% Similarity=0.255 Sum_probs=290.8
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHH-HHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSA-LIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~-~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
..+++|+++|+|||||||.||||+++|++ +...............+|++++..|++|+.+...++.++..|+++++.+.
T Consensus 250 ~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~ 329 (647)
T PTZ00237 250 PVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEG 329 (647)
T ss_pred eeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCC
Confidence 35789999999999999999999999998 43333333444567778999999999998776678899999999998764
Q ss_pred --CC----hHHHHHHHHHhcceEEeechHHHHHHHHHHHhh---ccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCce
Q 012673 140 --FE----SKSALEAVEQHCVTSLITVPAIMADLATLIRVK---KTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKL 210 (458)
Q Consensus 140 --~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i 210 (458)
+. +..+++.|+++++|++.++|++++.|++..... ....++++||.++++|+++++++.+++++.+ ++++
T Consensus 330 ~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~-g~~i 408 (647)
T PTZ00237 330 GIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKL-KIKS 408 (647)
T ss_pred CCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHHHHHHHHHhc-CCCE
Confidence 12 678999999999999999999999998753211 1112357899999999999999999999998 7999
Q ss_pred eeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEec
Q 012673 211 ISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRG 285 (458)
Q Consensus 211 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g 285 (458)
++.||+||+++.++.... .. . ...+++|.|+++++++++|++ .|+.|||++++
T Consensus 409 ~~~yG~TE~~~~~~~~~~-~~--~-------------------~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~GEl~v~~ 466 (647)
T PTZ00237 409 SRGYGQTEIGITYLYCYG-HI--N-------------------IPYNATGVPSIFIKPSILSEDGKELNVNEIGEVAFKL 466 (647)
T ss_pred EeeechHHhChhhhccCC-CC--C-------------------CCCCCCccCcCCceEEEECCCCCCCCCCCceEEEEec
Confidence 999999999854332111 00 0 012368999999999999875 57889999998
Q ss_pred c---ccchhhhcCcCCCCcccCC-CceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEE
Q 012673 286 A---HVMLRYWDQFLAKPSVSTG-EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361 (458)
Q Consensus 286 ~---~~~~gy~~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 361 (458)
| +++.|||++++.+...+.. +|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||.|.+++|+
T Consensus 467 p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavv 546 (647)
T PTZ00237 467 PMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSI 546 (647)
T ss_pred cCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEE
Confidence 6 7899999998877765543 78999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHH
Q 012673 362 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD 441 (458)
Q Consensus 362 ~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~ 441 (458)
+++++..++.++|+|+++++..... .. .....++|++++++ .|++|++|+.++++ ++||+|++||++|+
T Consensus 547 g~~~~~~g~~~~a~Vv~~~~~~~~~-------~~--~~~l~~~i~~~~~~-~l~~~~~P~~i~~v-~~lP~T~sGKi~R~ 615 (647)
T PTZ00237 547 GIYDPDCYNVPIGLLVLKQDQSNQS-------ID--LNKLKNEINNIITQ-DIESLAVLRKIIIV-NQLPKTKTGKIPRQ 615 (647)
T ss_pred eeEcCCCCCEEEEEEEeccCccccC-------CC--HHHHHHHHHHHHHh-hcCccccCcEEEEc-CCCCCCCCccEeHH
Confidence 9999999999999999875421000 00 01123577888887 69999999988775 77999999999999
Q ss_pred HHHHHHHHH
Q 012673 442 EVRREVMSH 450 (458)
Q Consensus 442 ~l~~~~~~~ 450 (458)
.|++.+...
T Consensus 616 ~Lr~~~~~~ 624 (647)
T PTZ00237 616 IISKFLNDS 624 (647)
T ss_pred HHHHHHcCC
Confidence 999997543
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=462.56 Aligned_cols=346 Identities=26% Similarity=0.406 Sum_probs=294.5
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 139 (458)
...++++++++|||||||.||+|+++|+++..+.......+++.++|++++.+|++|.+++ ..++.++..|+++++.++
T Consensus 209 ~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~ 288 (632)
T PRK07529 209 PIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATP 288 (632)
T ss_pred CCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCc
Confidence 3467999999999999999999999999998887777777888999999999999999887 467889999999998764
Q ss_pred C---C---hHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeec
Q 012673 140 F---E---SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISA 213 (458)
Q Consensus 140 ~---~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~ 213 (458)
. + ...+++.++++++|++.++|+++..|++..... ...+++|.+++||+++++++.+.+++.+ ++++++.
T Consensus 289 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---~~~~slr~v~~gg~~l~~~l~~~~~~~~-g~~l~~~ 364 (632)
T PRK07529 289 QGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVDG---HDISSLRYALCGAAPLPVEVFRRFEAAT-GVRIVEG 364 (632)
T ss_pred cccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccC---CCccceEEEEEcCCCCCHHHHHHHHHHh-CCcEeee
Confidence 1 1 357889999999999999999999998753221 2357899999999999999999999988 8999999
Q ss_pred cccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEe--cCC--------CCCccEEEE
Q 012673 214 YGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC--SDG--------SSHVGRILT 283 (458)
Q Consensus 214 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~--d~~--------~~~~Gel~v 283 (458)
||+||++..++....... ...+++|.|+|+++++++ |++ .|+.|||++
T Consensus 365 YG~TE~~~~~~~~~~~~~----------------------~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v 422 (632)
T PRK07529 365 YGLTEATCVSSVNPPDGE----------------------RRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCI 422 (632)
T ss_pred ecccccCcccccCCcccc----------------------ccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEE
Confidence 999999865443211100 022369999999999885 332 368899999
Q ss_pred eccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEee
Q 012673 284 RGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 363 (458)
Q Consensus 284 ~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 363 (458)
+|++++.||++++. +...+..++||+|||+|++++||++++.||+||+||++|++|+|.+||++|.+||+|.+++|++.
T Consensus 423 ~gp~v~~GY~~~~~-~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~ 501 (632)
T PRK07529 423 AGPNVFSGYLEAAH-NKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGR 501 (632)
T ss_pred ECCCccccccCCcc-ccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEec
Confidence 99999999998754 44555578999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccc-cccCCeEEEEeeCCCCCCCcccchHHH
Q 012673 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT-GFKAPRLFVLWRKPFPLTSTGKIRRDE 442 (458)
Q Consensus 364 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-~~~~p~~~~~~~~~lP~t~~GKv~r~~ 442 (458)
+++..++.++++|++.++. ..+.+++++++++ .++ .+++|+.++++ ++||+|++||++|+.
T Consensus 502 ~d~~~ge~~~a~v~l~~~~----------------~~~~~~l~~~~~~-~l~~~~~~P~~i~~v-~~lP~t~~GKi~r~~ 563 (632)
T PRK07529 502 PDAHAGELPVAYVQLKPGA----------------SATEAELLAFARD-HIAERAAVPKHVRIL-DALPKTAVGKIFKPA 563 (632)
T ss_pred cCCCCCceeEEEEEEcCCC----------------CCCHHHHHHHHHH-hcchhccCCcEEEEe-cCCCCCCCCcccHHH
Confidence 9999999999999988752 2456789999998 565 68999998875 789999999999999
Q ss_pred HHHHHHHHh
Q 012673 443 VRREVMSHL 451 (458)
Q Consensus 443 l~~~~~~~~ 451 (458)
|++.+..+.
T Consensus 564 Lr~~~~~~~ 572 (632)
T PRK07529 564 LRRDAIRRV 572 (632)
T ss_pred HHHHHHHHH
Confidence 999887644
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-57 Score=470.22 Aligned_cols=427 Identities=24% Similarity=0.337 Sum_probs=307.9
Q ss_pred cccccccchhhhhhccccCCCcceEEeeCCCCcchhh------hhhhhhhcccccCcccccCCCCCCCCCceEEEEeccC
Q 012673 2 LVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVN------KRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSG 75 (458)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSG 75 (458)
+|++....+.+..+ ..+++.+++++.+++....... ...+..++.+...............++|+++|+||||
T Consensus 182 li~~~~~~~~l~~~-~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSG 260 (696)
T PLN02387 182 VICDSKQLKKLIDI-SSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSG 260 (696)
T ss_pred EEECHHHHHHHHHH-hhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCC
Confidence 44555544444443 4567888888888753221000 0011112222211111111112346899999999999
Q ss_pred CCCCccceecccHHHHHHHHHHHHhh-cCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCC------C--hHHHH
Q 012673 76 TTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKF------E--SKSAL 146 (458)
Q Consensus 76 TTG~PK~v~~sh~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~------~--~~~~~ 146 (458)
|||.||||++||+++..+.......+ ++.++|++++++|++|++++...+..+..|+++.+.... + +..++
T Consensus 261 TTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~ 340 (696)
T PLN02387 261 STGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTK 340 (696)
T ss_pred CCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCch
Confidence 99999999999999988776655443 578899999999999999987666667777777654321 1 23456
Q ss_pred HHHHHhcceEEeechHHHHHHHHHHHhhcc---------------------------------------------ccCCC
Q 012673 147 EAVEQHCVTSLITVPAIMADLATLIRVKKT---------------------------------------------WKGRD 181 (458)
Q Consensus 147 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------------------------------~~~~~ 181 (458)
..+++++||+++++|.++..+.+....... .....
T Consensus 341 ~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 420 (696)
T PLN02387 341 GDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGG 420 (696)
T ss_pred hhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCC
Confidence 789999999999999999998764321100 00115
Q ss_pred CceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecc
Q 012673 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGK 261 (458)
Q Consensus 182 ~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 261 (458)
++|.+++||+++++++.+.++..+ +++++++||+||+++.++.....+. ..+++|.
T Consensus 421 ~lr~i~~GGapl~~~~~~~~~~~~-g~~v~~~YG~TEt~~~~~~~~~~~~-----------------------~~gsvG~ 476 (696)
T PLN02387 421 RIRFMLSGGAPLSGDTQRFINICL-GAPIGQGYGLTETCAGATFSEWDDT-----------------------SVGRVGP 476 (696)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHc-CCCeeEeechhhcccceeecCcccC-----------------------CCCccCC
Confidence 899999999999999988888777 7999999999999865554322110 1236999
Q ss_pred cCCCceEEEec-CC--------CCCccEEEEeccccchhhhcCcCCCCccc--CCCc--eEecCceEEEeCCCcEEEEee
Q 012673 262 PAPHVELKVCS-DG--------SSHVGRILTRGAHVMLRYWDQFLAKPSVS--TGEV--WLDTGDIGSIDDGGNVWLVGR 328 (458)
Q Consensus 262 p~~~~~~~i~d-~~--------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~--~~~~--~~~TGD~~~~~~~g~l~~~GR 328 (458)
|+|+++++++| ++ +++.|||+++|++++.|||++++.|.+.+ +.+| ||+|||+|++++||+++++||
T Consensus 477 p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR 556 (696)
T PLN02387 477 PLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDR 556 (696)
T ss_pred CCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEc
Confidence 99999999998 32 23469999999999999999999998877 3344 999999999999999999999
Q ss_pred ccceeee-CceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecccc--ccccccccccchhhh-------h
Q 012673 329 RNGRIKS-GGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESW--QWSESNCDQSSKNKE-------L 398 (458)
Q Consensus 329 ~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~--~~~~~~~~~~~~~~~-------~ 398 (458)
+||+||. +|++|+|.+||++|.+||.|.+++|++.+. ...++|+|++.+.. .|..+.........+ .
T Consensus 557 ~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (696)
T PLN02387 557 KKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPF---HSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAV 633 (696)
T ss_pred ccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCC---cceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHH
Confidence 9999996 799999999999999999999999998653 34578899887653 111111110000000 0
Q ss_pred hhhHHHHHHHhhhcccccccCCeEEEEeeCCCC-----CCCcccchHHHHHHHHHHHhhcCCC
Q 012673 399 LLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPS 456 (458)
Q Consensus 399 ~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~~~~ 456 (458)
..-.+.+.+..++.+|+.|++|+.|.++.++|. +|+++|++|..+++.|++.|++||+
T Consensus 634 ~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~ 696 (696)
T PLN02387 634 KEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE 696 (696)
T ss_pred HHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHHHHHHHhC
Confidence 011223344433447999999999988777664 9999999999999999999999995
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-57 Score=446.88 Aligned_cols=361 Identities=31% Similarity=0.420 Sum_probs=290.1
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhc-CCCCceEEeccchhhHhhhHH-HHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG-YGEDDVYLHTAPLCHIGGLSS-AMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~-~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~ 138 (458)
...++|+|.|+|||||||.||||++||+|+.+++........ ++++|++++++|+.|++.... ....+..|+++. .
T Consensus 187 ~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~--~ 264 (613)
T COG1022 187 PPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVL--F 264 (613)
T ss_pred CCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEE--e
Confidence 457899999999999999999999999999999999999997 999999999999999999865 334444444433 3
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhh----c---------------------------------------
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVK----K--------------------------------------- 175 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~--------------------------------------- 175 (458)
..++..+++.+++++||+++++|.++..+.+.+..+ .
T Consensus 265 ~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf 344 (613)
T COG1022 265 KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVF 344 (613)
T ss_pred cCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHH
Confidence 459999999999999999999999999876542110 0
Q ss_pred ---cccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCC
Q 012673 176 ---TWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVH 252 (458)
Q Consensus 176 ---~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (458)
......++|.+++||+++++++...++.. ++++.++||+||+++.++.......
T Consensus 345 ~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~~~~~~--------------------- 401 (613)
T COG1022 345 RKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVNPPDRF--------------------- 401 (613)
T ss_pred HHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEccccCc---------------------
Confidence 00112589999999999999999999887 7999999999999988876654332
Q ss_pred CCCceEecccCCCceEEEecCCCCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccce
Q 012673 253 QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGR 332 (458)
Q Consensus 253 ~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~ 332 (458)
..+++|.|+|+++++|.|+ |||+||||++|+|||++|++|.+.++.||||+|||+|.++++|+|+++||++|+
T Consensus 402 --~~gtvG~p~p~~evKI~d~-----GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~ 474 (613)
T COG1022 402 --VLGTVGKPLPGIEVKIADD-----GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKEL 474 (613)
T ss_pred --ccCCcCCcCCCceEEEccC-----ceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccce
Confidence 3346999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred ee-eCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEeccccc--cccccccccchhhhhhhhHHHHHHHh
Q 012673 333 IK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQ--WSESNCDQSSKNKELLLSSEVLRQHC 409 (458)
Q Consensus 333 i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (458)
|+ .+|++|.|+.||+.+.++|.|.+++|++. + ...+.|+|++..+.- |.+...........+......+.+..
T Consensus 475 i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~-~---k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~ 550 (613)
T COG1022 475 IKLSNGKNIAPEPIESKLAKSPLIEQICVVGD-D---KKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLI 550 (613)
T ss_pred EECCCCcccChHHHHHHHhcCCCeeEEEEEec-C---CcceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHHH
Confidence 99 79999999999999999999999999992 2 245889999876641 22221100001111111112222221
Q ss_pred ----h--hcccccccCCeEEEEeeCCCC-----CCCcccchHHHHHHHHHHHhhcCCCC
Q 012673 410 ----R--EKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPSN 457 (458)
Q Consensus 410 ----~--~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~~~~~ 457 (458)
. ...+..+..++.++++.+++. .|++-|++|..+.+.|...++.+|++
T Consensus 551 ~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~~y~~ 609 (613)
T COG1022 551 LPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSR 609 (613)
T ss_pred HHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHHHhhc
Confidence 1 113566777877777766665 89999999999999999999999974
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=463.33 Aligned_cols=358 Identities=19% Similarity=0.214 Sum_probs=292.7
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHH-HHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQ-SLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~-~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 139 (458)
..++++++|+|||||||.||||+++|.++..+ .......++++++|++++.+|++|+.+. ..++.+|+.|+++++.+.
T Consensus 229 ~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~ 308 (628)
T TIGR02316 229 LESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEG 308 (628)
T ss_pred cCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCC
Confidence 46799999999999999999999999997544 3445556788999999999999999886 567899999999998763
Q ss_pred ----CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccc
Q 012673 140 ----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYG 215 (458)
Q Consensus 140 ----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG 215 (458)
+++..+++.|+++++|+++++|++++.|.+..........+++||.+++||+++++++.+++.+.+ +..+++.||
T Consensus 309 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~~~yG 387 (628)
T TIGR02316 309 LPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVIDNYW 387 (628)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHh-CCCEEeccc
Confidence 578999999999999999999999998876432111122457999999999999999999999988 789999999
Q ss_pred cccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEecc---
Q 012673 216 MTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGA--- 286 (458)
Q Consensus 216 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~--- 286 (458)
+||++..++........ . ....+++|.|+++++++++|++ .++.|||+++||
T Consensus 388 ~TE~~~~~~~~~~~~~~--~-----------------~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~ 448 (628)
T TIGR02316 388 QTETGWPVLAIMPGLDL--K-----------------PVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPP 448 (628)
T ss_pred ccccCceeecCCCCCCc--C-----------------CCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCc
Confidence 99998543322111000 0 0122368999999999999873 478899999998
Q ss_pred ccchhhhcCcCCCCccc---CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEee
Q 012673 287 HVMLRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 363 (458)
Q Consensus 287 ~~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 363 (458)
+.+.|||++++.+...+ .+++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|+++
T Consensus 449 g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~ 528 (628)
T TIGR02316 449 GCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGV 528 (628)
T ss_pred cccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEee
Confidence 56799998876544332 246899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHH
Q 012673 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 443 (458)
Q Consensus 364 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l 443 (458)
+++..++.++++++++++....+.. ......++|++++++ .|++|++|+.++++ ++||+|++||++|+.|
T Consensus 529 ~d~~~g~~~~~~vv~~~~~~~~~~~--------~~~~~~~~i~~~~~~-~L~~~~~P~~v~~v-~~lP~t~sGKi~r~~L 598 (628)
T TIGR02316 529 HDELKGQVAVVFAILKESDSAGDAH--------DPHAVETGMMDCVVR-QLGAVARPARVYFV-AALPKTRSGKLLRRSI 598 (628)
T ss_pred ecCCCCeEEEEEEEEcCCccccccc--------chHHHHHHHHHHHHH-hcCCCcCCCEEEEc-CCCCCCCchHHHHHHH
Confidence 9999999999999987652111000 011235789999998 69999999988775 7799999999999999
Q ss_pred HHHHHH
Q 012673 444 RREVMS 449 (458)
Q Consensus 444 ~~~~~~ 449 (458)
++.+..
T Consensus 599 ~~~~~~ 604 (628)
T TIGR02316 599 QALAEG 604 (628)
T ss_pred HHHHcC
Confidence 988753
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=463.26 Aligned_cols=354 Identities=21% Similarity=0.263 Sum_probs=296.5
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHH-HHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSL-AKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~ 138 (458)
..+++|+++|+|||||||.||||+++|+++..+.. .....++++++|++++..|++|+.+. ..++.++..|+++++.+
T Consensus 232 ~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~ 311 (625)
T TIGR02188 232 PMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFE 311 (625)
T ss_pred ecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEEC
Confidence 35678999999999999999999999999765443 34456688999999999999999887 45788999999999875
Q ss_pred C----CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCC--CCceee
Q 012673 139 K----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP--KAKLIS 212 (458)
Q Consensus 139 ~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~--~~~i~~ 212 (458)
. +++..+++.|+++++|++.++|+++..|.+..........++++|.++++|+++++++++++.+.++ ++++++
T Consensus 312 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~ 391 (625)
T TIGR02188 312 GTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVD 391 (625)
T ss_pred CCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEe
Confidence 3 4789999999999999999999999999876432222234578999999999999999999999884 388999
Q ss_pred ccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEec-
Q 012673 213 AYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRG- 285 (458)
Q Consensus 213 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g- 285 (458)
.||+||+++.++..... .. ....+++|+|+++++++++|++ .++.|||+++|
T Consensus 392 ~yG~TE~~~~~~~~~~~-~~--------------------~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~GeL~v~~p 450 (625)
T TIGR02188 392 TWWQTETGGIMITPLPG-AT--------------------PTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQP 450 (625)
T ss_pred cccccccCCceeecCCC-CC--------------------CcCCCcccCCcCCceEEEECCCCCCCCCCCCeEEEEEccC
Confidence 99999998654322111 00 0022368999999999999864 47889999999
Q ss_pred -cccchhhhcCcCCCCcccC--CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEe
Q 012673 286 -AHVMLRYWDQFLAKPSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVG 362 (458)
Q Consensus 286 -~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 362 (458)
|+++.|||++++.+...+. .+|||+|||++++++||+++++||+||+||++|++|+|.+||++|.+||+|.+++|++
T Consensus 451 ~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg 530 (625)
T TIGR02188 451 WPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVG 530 (625)
T ss_pred CCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEe
Confidence 6899999999876655442 4789999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHH
Q 012673 363 IANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDE 442 (458)
Q Consensus 363 ~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~ 442 (458)
++++..++.++++++++++.... ....++|++++++ .|+++++|+.++++ ++||+|++||++|+.
T Consensus 531 ~~~~~~g~~~~a~vv~~~~~~~~-------------~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~lP~t~sGKi~r~~ 595 (625)
T TIGR02188 531 IPDDIKGQAIYAFVTLKDGYEPD-------------DELRKELRKHVRK-EIGPIAKPDKIRFV-PGLPKTRSGKIMRRL 595 (625)
T ss_pred eEcCCCCeEEEEEEEeCCCCCCC-------------HHHHHHHHHHHHh-hcCCCccCcEEEEC-CCCCCCCCccchHHH
Confidence 99998999999999998763210 1134689999998 69999999988775 789999999999999
Q ss_pred HHHHHHHH
Q 012673 443 VRREVMSH 450 (458)
Q Consensus 443 l~~~~~~~ 450 (458)
|++.+...
T Consensus 596 l~~~~~~~ 603 (625)
T TIGR02188 596 LRKIAAGE 603 (625)
T ss_pred HHHHHcCC
Confidence 99987754
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-56 Score=455.73 Aligned_cols=351 Identities=29% Similarity=0.454 Sum_probs=297.6
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHH----hhcC-CCCceEEeccchhhHhhhH-HHHHHHhcCceE
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA----IVGY-GEDDVYLHTAPLCHIGGLS-SAMAMLMVGACH 134 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~----~~~~-~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~ 134 (458)
...++++++++|||||||.||||+++|+++..+...... .+.. ...++++..+|++|.+|+. .++.++..|+++
T Consensus 194 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~ 273 (560)
T PLN02574 194 VIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTI 273 (560)
T ss_pred CCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEE
Confidence 346789999999999999999999999999876654432 1222 3567889999999999984 456778889999
Q ss_pred EecCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecc
Q 012673 135 VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAY 214 (458)
Q Consensus 135 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 214 (458)
++.+.+++..+++.|+++++|+++++|+++..|++....... ..++++|.+++||+++++++++.+.+.|+++++++.|
T Consensus 274 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~Y 352 (560)
T PLN02574 274 VVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCG-EVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGY 352 (560)
T ss_pred EEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccccc-CccccceEEEEecccCCHHHHHHHHHHCCCCcEEecc
Confidence 999999999999999999999999999999999876432111 2356899999999999999999999999889999999
Q ss_pred ccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEecccc
Q 012673 215 GMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHV 288 (458)
Q Consensus 215 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~ 288 (458)
|+||++...+..... ... ....++|.|+++++++|+|++ .|+.|||+++|+++
T Consensus 353 G~tE~~~~~~~~~~~-~~~--------------------~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~ 411 (560)
T PLN02574 353 GMTESTAVGTRGFNT-EKL--------------------SKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGV 411 (560)
T ss_pred cccccCceeecCCCc-ccc--------------------CCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcch
Confidence 999998543321110 000 022369999999999999843 57889999999999
Q ss_pred chhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCC
Q 012673 289 MLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARL 368 (458)
Q Consensus 289 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 368 (458)
+.|||+++..+...+..+|||+|||+|+++++|+++++||++|+||++|++|+|.+||++|.+||+|.+++|++++++..
T Consensus 412 ~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~ 491 (560)
T PLN02574 412 MKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKEC 491 (560)
T ss_pred hhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCC
Confidence 99999999998888888999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHH
Q 012673 369 TEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448 (458)
Q Consensus 369 ~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~ 448 (458)
++.++++++..++. ..+.+++.+++++ .|++|+.|+.++++ ++||+|++||++|+.|++++.
T Consensus 492 g~~~~a~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~~v~~v-~~iP~t~~GKi~r~~L~~~~~ 553 (560)
T PLN02574 492 GEIPVAFVVRRQGS----------------TLSQEAVINYVAK-QVAPYKKVRKVVFV-QSIPKSPAGKILRRELKRSLT 553 (560)
T ss_pred CcceEEEEEeCCCC----------------CCCHHHHHHHHHH-hccCcccCcEEEEe-eccCCCCcchhhHHHHHHHHh
Confidence 89999999876541 1345789999998 69999999987765 789999999999999999987
Q ss_pred HHh
Q 012673 449 SHL 451 (458)
Q Consensus 449 ~~~ 451 (458)
+..
T Consensus 554 ~~~ 556 (560)
T PLN02574 554 NSV 556 (560)
T ss_pred hcc
Confidence 643
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-56 Score=456.67 Aligned_cols=348 Identities=26% Similarity=0.350 Sum_probs=298.9
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecC-C
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIP-K 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~-~ 139 (458)
..++|+++++|||||||.||||+++|+++..+.......+++.++|++++..|++|.+|. ..++.++..|+++++.+ .
T Consensus 202 ~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~ 281 (570)
T PRK04319 202 TDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGR 281 (570)
T ss_pred cCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCC
Confidence 467899999999999999999999999998887777778889999999999999999886 56889999999988875 5
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.|+++++|+++++|++++.|.+..........++++|.+++||+++++++.+++.+.+ +.++++.||+||+
T Consensus 282 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~tE~ 360 (570)
T PRK04319 282 FSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVF-GLPIHDNWWMTET 360 (570)
T ss_pred CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHh-CCCeEeceeeccc
Confidence 899999999999999999999999999986532211222457899999999999999999999988 7899999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEec--cccchhh
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRG--AHVMLRY 292 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g--~~~~~gy 292 (458)
+..++....... ...+++|+|+|+++++++|++ .|+.|||+++| +.++.||
T Consensus 361 ~~~~~~~~~~~~----------------------~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~~~GY 418 (570)
T PRK04319 361 GGIMIANYPAMD----------------------IKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIKKGWPSMMRGI 418 (570)
T ss_pred CCEEEecCCCCC----------------------CCCCcCcCCCCCCEEEEECCCCCCCCCCCceEEEEcCCCChHHhHh
Confidence 865432111100 012369999999999999876 57889999997 8999999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
|+++..+...+. ++||+|||+++++++|+++++||++|+|+.+|++|+|.+||++|.+||.|.+++|++++++..++.+
T Consensus 419 ~~~~~~~~~~~~-~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~ 497 (570)
T PRK04319 419 WNNPEKYESYFA-GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEII 497 (570)
T ss_pred cCCHHHhhhhhc-CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEE
Confidence 999988887775 7899999999999999999999999999999999999999999999999999999999999899999
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHH
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~ 448 (458)
++++++.++... .....+++++++++ .|+.|++|+.++++ ++||+|++||++|+.|++...
T Consensus 498 ~a~v~~~~~~~~-------------~~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~iP~t~~GKv~r~~L~~~~~ 558 (570)
T PRK04319 498 KAFVALRPGYEP-------------SEELKEEIRGFVKK-GLGAHAAPREIEFK-DKLPKTRSGKIMRRVLKAWEL 558 (570)
T ss_pred EEEEEECCCCCC-------------CHHHHHHHHHHHHH-hcccccCCcEEEEe-CCCCCCCchhhhHHHHHHHHh
Confidence 999998765210 01124688999998 69999999988765 789999999999999999864
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=458.69 Aligned_cols=354 Identities=21% Similarity=0.256 Sum_probs=294.7
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHH-HHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSL-AKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~ 138 (458)
...++|+++|+|||||||.||||+++|++++.+.. .....++++++|++++.+|++|+.+. ..++.++..|+++++.+
T Consensus 241 ~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~ 320 (637)
T PRK00174 241 PMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFE 320 (637)
T ss_pred ccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEEC
Confidence 35678999999999999999999999999865433 34445688899999999999999887 46788999999999875
Q ss_pred C----CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCC--CCceee
Q 012673 139 K----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP--KAKLIS 212 (458)
Q Consensus 139 ~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~--~~~i~~ 212 (458)
. +++..+++.|+++++|++.++|++++.|++..........+++||.++++|+++++++++++.+.++ ++++++
T Consensus 321 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~ 400 (637)
T PRK00174 321 GVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVD 400 (637)
T ss_pred CCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEe
Confidence 3 5789999999999999999999999998876432222224578999999999999999999998884 378999
Q ss_pred ccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEec--
Q 012673 213 AYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRG-- 285 (458)
Q Consensus 213 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g-- 285 (458)
.||+||++..++...... . ....+++|.|+++++++++|++ .|+.|||+++|
T Consensus 401 ~YG~TE~~~~~~~~~~~~-~--------------------~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~ 459 (637)
T PRK00174 401 TWWQTETGGIMITPLPGA-T--------------------PLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPW 459 (637)
T ss_pred cccccccCCceEecCCCC-C--------------------CcCCCcccCCCCCceEEEECCCCCCCCCCCcEEEEEcCCC
Confidence 999999986543211100 0 0012369999999999999975 47889999999
Q ss_pred cccchhhhcCcCCCCccc--CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEee
Q 012673 286 AHVMLRYWDQFLAKPSVS--TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 363 (458)
Q Consensus 286 ~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 363 (458)
++++.|||++++.+...+ ..+|||+|||++++++||+++++||+||+||++|++|+|.+||++|.+||+|.+++|+++
T Consensus 460 p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~ 539 (637)
T PRK00174 460 PGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGR 539 (637)
T ss_pred CcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEee
Confidence 689999999987655443 347899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHH
Q 012673 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 443 (458)
Q Consensus 364 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l 443 (458)
+++..++.+++++++.++... .....++|++++++ .|+.|++|+.++++ ++||+|++||++|+.|
T Consensus 540 ~~~~~g~~~~a~vv~~~~~~~-------------~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t~~GKi~R~~L 604 (637)
T PRK00174 540 PDDIKGQGIYAFVTLKGGEEP-------------SDELRKELRNWVRK-EIGPIAKPDVIQFA-PGLPKTRSGKIMRRIL 604 (637)
T ss_pred EcCCCCeEEEEEEEECCCCCC-------------CHHHHHHHHHHHHh-hcCCccCCCEEEEc-CCCCCCCCcchHHHHH
Confidence 999899999999998765210 01125679999988 69999999988775 7899999999999999
Q ss_pred HHHHHHH
Q 012673 444 RREVMSH 450 (458)
Q Consensus 444 ~~~~~~~ 450 (458)
++.....
T Consensus 605 ~~~~~~~ 611 (637)
T PRK00174 605 RKIAEGE 611 (637)
T ss_pred HHHHcCC
Confidence 9987644
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-55 Score=445.89 Aligned_cols=345 Identities=28% Similarity=0.452 Sum_probs=300.3
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~ 140 (458)
..++++++++|||||||.||+|+++|+++..+.......+++.++|++++.+|++|..++ ..++.++..|+++++.+.+
T Consensus 194 ~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~ 273 (547)
T PRK13295 194 PGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIW 273 (547)
T ss_pred CCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCC
Confidence 457899999999999999999999999998888877788889999999999999999887 5678899999999999889
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.++++++|++.++|+++..|........ ...+++|.+++||+++++++.+.+++.| ++++++.||+||++
T Consensus 274 ~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~ 350 (547)
T PRK13295 274 DPARAAELIRTEGVTFTMASTPFLTDLTRAVKESG--RPVSSLRTFLCAGAPIPGALVERARAAL-GAKIVSAWGMTENG 350 (547)
T ss_pred CHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccC--CCcccceEEEEecCCCCHHHHHHHHHHh-CCCeEEeccCCCCC
Confidence 99999999999999999999999999887654332 2457899999999999999999999998 89999999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhcC
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWDQ 295 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~~ 295 (458)
...+.+... ... ....++|.|+++++++++|++ .|+.|||+++|++++.||+++
T Consensus 351 ~~~~~~~~~-~~~--------------------~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~ 409 (547)
T PRK13295 351 AVTLTKLDD-PDE--------------------RASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKR 409 (547)
T ss_pred CeeeccCCC-cch--------------------hccCccccccCCcEEEEECCCCCCCCCCCCCeEEEEcCcccccccCC
Confidence 654332111 000 011258999999999999875 478899999999999999999
Q ss_pred cCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEE
Q 012673 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVAC 375 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~ 375 (458)
++.+... .+|||+|||+++++++|++++.||.+|+|+.+|++|+|.+||++|.++++|.+++|+++++...++.++++
T Consensus 410 ~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~ 487 (547)
T PRK13295 410 PQLNGTD--ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAF 487 (547)
T ss_pred ccccccC--CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEE
Confidence 9887765 57899999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred EEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 376 VRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 376 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
+++.++. ..+.+++.+++++..+++|++|+.++++ ++||+|++||++|+.|++.+.+
T Consensus 488 v~~~~~~----------------~~~~~~l~~~~~~~~l~~~~~P~~i~~v-~~lP~t~sgK~~r~~L~~~~~~ 544 (547)
T PRK13295 488 VVPRPGQ----------------SLDFEEMVEFLKAQKVAKQYIPERLVVR-DALPRTPSGKIQKFRLREMLRG 544 (547)
T ss_pred EEeCCCC----------------CCCHHHHHHHHHhccCccccCCcEEEEe-ccCCCCCCccccHHHHHHHHhc
Confidence 9987541 1345678888876469999999998875 7899999999999999988764
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=457.05 Aligned_cols=368 Identities=27% Similarity=0.305 Sum_probs=287.4
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHh-----hcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEe
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI-----VGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVF 136 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~-----~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~ 136 (458)
..|+|+++|+|||||||.||||++||+++..+....... .+++++|++++++|++|.++....+.++..|+++++
T Consensus 217 ~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~ 296 (660)
T PLN02430 217 PKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGY 296 (660)
T ss_pred cCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEE
Confidence 368999999999999999999999999998776554322 146789999999999999998666677889999887
Q ss_pred cCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhcc------------------------------c---------
Q 012673 137 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT------------------------------W--------- 177 (458)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------------------~--------- 177 (458)
.+. ++..+++.|++++||++.++|.++..+.+....... .
T Consensus 297 ~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ 375 (660)
T PLN02430 297 YHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFR 375 (660)
T ss_pred eCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHH
Confidence 654 788899999999999999999999888764321000 0
Q ss_pred ----cCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCC
Q 012673 178 ----KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQ 253 (458)
Q Consensus 178 ----~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (458)
....++|.+++||+++++++.+.++ .++++.++++||+||+++.++.......
T Consensus 376 ~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~~YG~TE~~~~~~~~~~~~~---------------------- 432 (660)
T PLN02430 376 KVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQGYGLTETLGPTTLGFPDEM---------------------- 432 (660)
T ss_pred HHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeeeecchhhhhhceEeeccccC----------------------
Confidence 0015799999999999999866555 4435789999999999875543321110
Q ss_pred CCceEecccCCCceEEEecCC--------CCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEE
Q 012673 254 PQGVCVGKPAPHVELKVCSDG--------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWL 325 (458)
Q Consensus 254 ~~~~~~G~p~~~~~~~i~d~~--------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~ 325 (458)
...+++|.|.+++++++.+.+ .+..|||+|+|++++.|||++++.|...+ .+|||+|||+|++++||++++
T Consensus 433 ~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw~~TGDig~~d~dG~l~i 511 (660)
T PLN02430 433 CMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPNGVLKI 511 (660)
T ss_pred CCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hccceeccceEEECCCCcEEE
Confidence 012369999999999997621 23579999999999999999999998877 589999999999999999999
Q ss_pred Eeeccceeee-CceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecccc--ccccccccccchhhh-----
Q 012673 326 VGRRNGRIKS-GGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESW--QWSESNCDQSSKNKE----- 397 (458)
Q Consensus 326 ~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~--~~~~~~~~~~~~~~~----- 397 (458)
+||++|+||. +|++|+|.+||++|.+||.|.+++|++. ..++.++|+|++.+.. .|........ ...+
T Consensus 512 ~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~---~~~~~~~A~vv~~~~~~~~~~~~~~~~~-~~~~~~~~~ 587 (660)
T PLN02430 512 IDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGD---SFKSMLVAVVVPNEENTNKWAKDNGFTG-SFEELCSLP 587 (660)
T ss_pred EEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEec---CCcceEEEEEEcCHHHHHHHHHhCCCCC-CHHHHhcCH
Confidence 9999999995 7999999999999999999999999983 2357899999987653 1111111100 0000
Q ss_pred --hhhhHHHHHHHhhhcccccccCCeEEEEeeCCCC-----CCCcccchHHHHHHHHHHHhhcCCCCC
Q 012673 398 --LLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPSNL 458 (458)
Q Consensus 398 --~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~~~~~~ 458 (458)
...-.+++.+..++..|+.|++++.+.+..++|. +|+|+|++|+.+.+.|++.|++||+++
T Consensus 588 ~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~~~ 655 (660)
T PLN02430 588 ELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYRKL 655 (660)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 0011133444443446999999999998877773 999999999999999999999999763
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-56 Score=416.18 Aligned_cols=427 Identities=23% Similarity=0.302 Sum_probs=326.4
Q ss_pred cccccccchhhhhhccccCCCcceEEeeCC----CCcchhh-----hhhhhhhcccccCccccc-CCCCCCCCCceEEEE
Q 012673 2 LVTDESSDSWYLELQHTAIPSLRWHVSLGS----SSSDFVN-----KRDMLTADILKGYSLRSL-PFTHSWAPEGAVIIC 71 (458)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~p~l~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~ 71 (458)
++++..+.+.+... ..+++.+|++|..+. ...+..+ ...++.++.+........ ++.+ ..|+|+|+||
T Consensus 166 i~T~~~LL~kl~~~-l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~-P~p~Dia~IM 243 (678)
T KOG1180|consen 166 IFTDSELLPKLKAP-LKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHP-PKPSDIACIM 243 (678)
T ss_pred EEeCHHHHHHHHHH-HhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCC-CCCCceEEEE
Confidence 56777777644333 467899999998873 2211111 123445555554443331 2222 2689999999
Q ss_pred eccCCCCCccceecccHHHHHHHHHHHHhh-cCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCCh---H-HH-
Q 012673 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFES---K-SA- 145 (458)
Q Consensus 72 ~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~---~-~~- 145 (458)
|||||||.||||+++|+|+++......... .+.+.|+++.++|+.|++.+..-+.++..|+++-+.+..+. . .+
T Consensus 244 YTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~ 323 (678)
T KOG1180|consen 244 YTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIK 323 (678)
T ss_pred EcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhc
Confidence 999999999999999999998877666555 67899999999999999999888999999999988765221 1 11
Q ss_pred ---HHHHHHhcceEEeechHHHHHHHHHHHhh--------------------------cc--------------ccCCCC
Q 012673 146 ---LEAVEQHCVTSLITVPAIMADLATLIRVK--------------------------KT--------------WKGRDS 182 (458)
Q Consensus 146 ---~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------~~--------------~~~~~~ 182 (458)
--.+..++||++.++|.++.++.+....+ .. ......
T Consensus 324 kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~ 403 (678)
T KOG1180|consen 324 KGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGN 403 (678)
T ss_pred cCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCc
Confidence 23567889999999999998875532100 00 012357
Q ss_pred ceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEeccc
Q 012673 183 VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKP 262 (458)
Q Consensus 183 lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p 262 (458)
||.+++||+|++++..+.+.-.+ ++++.++||.||+++.++.....+... +.+|.|
T Consensus 404 lR~~LsGGapLS~dtQrF~nic~-C~Pv~qGYGLTEtca~~tv~e~~d~~~-----------------------g~vG~p 459 (678)
T KOG1180|consen 404 LRYILSGGAPLSPDTQRFMNICF-CCPVLQGYGLTETCAAATVLEPEDFST-----------------------GRVGAP 459 (678)
T ss_pred eEEEEeCCCCCCHHHHHHHHHhc-cccccccccccchhcccEecChhhccc-----------------------ccccCC
Confidence 99999999999999988888888 789999999999998887766554432 259999
Q ss_pred CCCceEEEecCC--------CCCccEEEEeccccchhhhcCcCCCCcccCC-Cc--eEecCceEEEeCCCcEEEEeeccc
Q 012673 263 APHVELKVCSDG--------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTG-EV--WLDTGDIGSIDDGGNVWLVGRRNG 331 (458)
Q Consensus 263 ~~~~~~~i~d~~--------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-~~--~~~TGD~~~~~~~g~l~~~GR~~d 331 (458)
++.++++++|-. ....||||++|+++..|||+++++|.+.|.. +| ||+|||+|++.+||+|.+++|++|
T Consensus 460 l~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKd 539 (678)
T KOG1180|consen 460 LPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKD 539 (678)
T ss_pred ccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhh
Confidence 999999999843 2258999999999999999999999999877 77 999999999999999999999999
Q ss_pred eee-eCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecccc--ccccccccccchhhhhh-------hh
Q 012673 332 RIK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESW--QWSESNCDQSSKNKELL-------LS 401 (458)
Q Consensus 332 ~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~--~~~~~~~~~~~~~~~~~-------~~ 401 (458)
++| .+|+.|+++.||.+++..|.|...+|++-. ....++++|||+.+. .+.+..+...+.+++-- .-
T Consensus 540 LVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~---~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v 616 (678)
T KOG1180|consen 540 LVKLQNGEYISLGKVEAALRSSPYVDNICVYADS---NKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAV 616 (678)
T ss_pred hhhhcccceeehHHHHHHHhcCcchhheEEeccc---ccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHH
Confidence 999 899999999999999999999999999743 346799999998764 12222222222222110 11
Q ss_pred HHHHHHHhhhcccccccCCeEEEEeeCCC-C----CCCcccchHHHHHHHHHHHhhcCCCC
Q 012673 402 SEVLRQHCREKNLTGFKAPRLFVLWRKPF-P----LTSTGKIRRDEVRREVMSHLKSLPSN 457 (458)
Q Consensus 402 ~~~l~~~~~~~~l~~~~~p~~~~~~~~~l-P----~t~~GKv~r~~l~~~~~~~~~~~~~~ 457 (458)
.++|.+.-+.++|..+.+|..+++..+++ | .|+.-|++|+.++..|.++++.+|++
T Consensus 617 ~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei~~~Y~~ 677 (678)
T KOG1180|consen 617 LKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKEIDRLYKE 677 (678)
T ss_pred HHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 23344444456899999999998876655 2 67788999999999999999999986
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-55 Score=455.47 Aligned_cols=349 Identities=17% Similarity=0.136 Sum_probs=281.3
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHH-HHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIV-QSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
.+++|+++|+|||||||.||||+++|++++. ........++++++|++++..|+.|+.+ ..++.++..|+++++++.
T Consensus 261 ~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~ 339 (652)
T TIGR01217 261 LPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-NWLVSGLATGATLVLYDGS 339 (652)
T ss_pred cCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-HHHHHHHhcCcEEEEECCC
Confidence 4578999999999999999999999998654 3344455678899999999999999853 335688999999998753
Q ss_pred ---CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCC-CCceeeccc
Q 012673 140 ---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP-KAKLISAYG 215 (458)
Q Consensus 140 ---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~~i~~~YG 215 (458)
.++..++++++++++|++...|.++..+...........++++||.+++||+++++++.+++.+.++ ++.+.+.||
T Consensus 340 ~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG 419 (652)
T TIGR01217 340 PGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISG 419 (652)
T ss_pred CCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccC
Confidence 3788999999999999987777766655432111111224579999999999999999999998873 356778999
Q ss_pred cccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC----CCCccEEEEecc--ccc
Q 012673 216 MTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SSHVGRILTRGA--HVM 289 (458)
Q Consensus 216 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~----~~~~Gel~v~g~--~~~ 289 (458)
+||++..........+ ...+++|.|.++++++++|++ .|+.|||+++|+ +++
T Consensus 420 ~TE~~~~~~~~~~~~~----------------------~~~g~~g~p~~g~~v~ivd~~g~~~~g~~GEl~v~gp~p~~~ 477 (652)
T TIGR01217 420 GTDICSCFAGANPTLP----------------------VHIGEIQAPGLGTAVQSWDPEGKPVTGEVGELVCTNPMPSMP 477 (652)
T ss_pred HHHHhccccCCCCCCC----------------------CcCCccCCCcCCCceEEECCCCCCCCCCccEEEEecCCCccc
Confidence 9997532221110000 012358999999999999876 478899999996 588
Q ss_pred hhhhcCcCCCCc---cc-CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecC
Q 012673 290 LRYWDQFLAKPS---VS-TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 365 (458)
Q Consensus 290 ~gy~~~~~~~~~---~~-~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 365 (458)
.|||++++.+.. .+ ..+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|+++++
T Consensus 478 ~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~ 557 (652)
T TIGR01217 478 IRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQ 557 (652)
T ss_pred cceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeec
Confidence 999999876541 12 23688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 366 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 366 ~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
+..++.++++|+++++.... ....++|++++++ .|++|++|+.++++ +.||+|++||++|+.||+
T Consensus 558 ~~~ge~~~afVv~~~~~~~~-------------~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~lP~T~sGKi~r~~Lr~ 622 (652)
T TIGR01217 558 PDGGYRVVLFVHLAPGATLD-------------DALLDRIKRTIRA-GLSPRHVPDEIIEV-PGIPHTLTGKRVEVAVKR 622 (652)
T ss_pred CCCCEEEEEEEEECCCCCCC-------------HHHHHHHHHHHHh-hCCCCcCCCEEEEC-CCCCCCCCccChHHHHHH
Confidence 99999999999998653100 0124689999988 79999999998775 789999999999999999
Q ss_pred HHH
Q 012673 446 EVM 448 (458)
Q Consensus 446 ~~~ 448 (458)
.+.
T Consensus 623 ~~~ 625 (652)
T TIGR01217 623 VLQ 625 (652)
T ss_pred HHc
Confidence 874
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-55 Score=434.30 Aligned_cols=334 Identities=26% Similarity=0.387 Sum_probs=279.1
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFE 141 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~ 141 (458)
..++++++++|||||||.||||++||+++..+.......+++.+ ++.++.+|++|.+|+..++.++..|+++++.+...
T Consensus 117 ~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~ 195 (452)
T PRK07445 117 PNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKR 195 (452)
T ss_pred CCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHh
Confidence 35789999999999999999999999999877776666666654 46788999999999988889999999999887433
Q ss_pred hHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCcc
Q 012673 142 SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSS 221 (458)
Q Consensus 142 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 221 (458)
.........+++++++.++|+++..+++.. . ..++++|.+++||+++++++.+.+.+ + ++++++.||+||++.
T Consensus 196 ~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~---~--~~l~~l~~i~~gG~~l~~~~~~~~~~-~-~~~l~~~YG~TE~~~ 268 (452)
T PRK07445 196 LKSGQELPPNPSDFFLSLVPTQLQRLLQLR---P--QWLAQFRTILLGGAPAWPSLLEQARQ-L-QLRLAPTYGMTETAS 268 (452)
T ss_pred ccchhhhhhhcCceEEEehHHHHHHHHhhC---h--hhhhcceEEEECCccCCHHHHHHHHh-c-CCeEecCcchhhhcc
Confidence 333334445788999999999999987621 1 12468999999999999999988875 4 789999999999875
Q ss_pred ceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEeccccchhhhcCcCCCCc
Q 012673 222 SLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPS 301 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~~~~~gy~~~~~~~~~ 301 (458)
.++....... . ....++|+|+|+++++++ .++.|||+++|+.++.|||+++.
T Consensus 269 ~~~~~~~~~~-~--------------------~~~~~~G~~~p~~~v~i~---~g~~Gel~v~g~~~~~gY~~~~~---- 320 (452)
T PRK07445 269 QIATLKPDDF-L--------------------AGNNSSGQVLPHAQITIP---ANQTGNITIQAQSLALGYYPQIL---- 320 (452)
T ss_pred cccccCchhh-c--------------------cCCCcCCccCCCCeEEEc---CCCcceEEEeCCccchhhcCCcc----
Confidence 4332111000 0 012258999999999997 56789999999999999997543
Q ss_pred ccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEeccc
Q 012673 302 VSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRES 381 (458)
Q Consensus 302 ~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~ 381 (458)
..++||+|||++++++||++++.||+||+||++|++|+|.+||++|.+||+|.+++|++++++..|+.+++++++.++
T Consensus 321 --~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~ 398 (452)
T PRK07445 321 --DSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP 398 (452)
T ss_pred --CCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC
Confidence 246899999999999999999999999999999999999999999999999999999999999889999999987654
Q ss_pred cccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 382 WQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
. .+.+++++++++ .|++|++|+.++++ ++||+|++||++|+.|++++.++|+
T Consensus 399 ~-----------------~~~~~l~~~~~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~~~~~~~ 450 (452)
T PRK07445 399 S-----------------ISLEELKTAIKD-QLSPFKQPKHWIPV-PQLPRNPQGKINRQQLQQIAVQRLG 450 (452)
T ss_pred C-----------------CCHHHHHHHHHH-hCCcccCCeEEEEe-cCCCCCCCcccCHHHHHHHHHHhhC
Confidence 1 346789999998 69999999998775 7899999999999999999998875
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-55 Score=454.48 Aligned_cols=351 Identities=18% Similarity=0.153 Sum_probs=288.2
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHH-HHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQ-SLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~-~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
..+++|+++|+|||||||.||||+++|++++.+ .......+++.++|+++++.++.|+.+. .++.+++.|+++++.+.
T Consensus 259 ~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~ 337 (655)
T PRK03584 259 PVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDG 337 (655)
T ss_pred ecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCC
Confidence 346799999999999999999999999987644 4455567788999999999999887543 45688999999998753
Q ss_pred ----CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhC-CCCceeecc
Q 012673 140 ----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF-PKAKLISAY 214 (458)
Q Consensus 140 ----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~~i~~~Y 214 (458)
+++..+++.|+++++|++.++|+++..+.+..........+++||.+++||+++++++.+++.+.+ +++.+.+.|
T Consensus 338 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~y 417 (655)
T PRK03584 338 SPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASIS 417 (655)
T ss_pred CCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEecc
Confidence 578999999999999999999999998876421111223457999999999999999999999988 368899999
Q ss_pred ccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC----CCCccEEEEecc--cc
Q 012673 215 GMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SSHVGRILTRGA--HV 288 (458)
Q Consensus 215 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~----~~~~Gel~v~g~--~~ 288 (458)
|+||++.......... ....+++|.|.++++++++|++ .++.|||+++|+ ++
T Consensus 418 G~TE~~~~~~~~~~~~----------------------~~~~g~~g~p~~g~~~~ivd~~g~~~~g~~GeL~v~gp~p~~ 475 (655)
T PRK03584 418 GGTDICSCFVGGNPLL----------------------PVYRGEIQCRGLGMAVEAWDEDGRPVVGEVGELVCTKPFPSM 475 (655)
T ss_pred ChHhhhcccccCCCCC----------------------CcCCCccCCCcCCceeEEECCCCCCCCCCceEEEEccCCCCC
Confidence 9999864322111000 0122368999999999999976 378899999996 78
Q ss_pred chhhhcCcCCCCc--c-c-CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeec
Q 012673 289 MLRYWDQFLAKPS--V-S-TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 364 (458)
Q Consensus 289 ~~gy~~~~~~~~~--~-~-~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 364 (458)
+.|||++++.+.. . + ..++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++
T Consensus 476 ~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~ 555 (655)
T PRK03584 476 PLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQE 555 (655)
T ss_pred cceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeE
Confidence 9999999875431 1 1 2357899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHH
Q 012673 365 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444 (458)
Q Consensus 365 ~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~ 444 (458)
++..++.++++|+++++.... ....++|++++++ .|++|++|+.++++ ++||+|++||++|+.||
T Consensus 556 ~~~~g~~~~a~vv~~~~~~~~-------------~~~~~~l~~~~~~-~L~~~~~P~~i~~v-~~lP~t~sGKi~r~~lr 620 (655)
T PRK03584 556 WPDGDVRMPLFVVLAEGVTLD-------------DALRARIRTTIRT-NLSPRHVPDKIIAV-PDIPRTLSGKKVELPVK 620 (655)
T ss_pred cCCCCEEEEEEEEECCCCCCc-------------HHHHHHHHHHHHh-hCCCCcCCCEEEEC-CCCCCCCCccchHHHHH
Confidence 988899999999998652100 0124678999998 69999999998875 78999999999999999
Q ss_pred HHHHH
Q 012673 445 REVMS 449 (458)
Q Consensus 445 ~~~~~ 449 (458)
+.+..
T Consensus 621 ~~~~~ 625 (655)
T PRK03584 621 KLLHG 625 (655)
T ss_pred HHHcC
Confidence 98764
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=443.87 Aligned_cols=351 Identities=30% Similarity=0.447 Sum_probs=300.3
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHH----hhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEE
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA----IVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHV 135 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v 135 (458)
...++++++++|||||||.||||+++|+++......... .+++..+|++++.+|++|.+++. .++.++..|++++
T Consensus 175 ~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~ 254 (537)
T PLN02246 175 EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAIL 254 (537)
T ss_pred CCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEE
Confidence 346799999999999999999999999999866554332 45688999999999999999984 4668899999999
Q ss_pred ecCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccc
Q 012673 136 FIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYG 215 (458)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG 215 (458)
+.+.+++..+++.|+++++|++.++|+++..|++...... ..++++|.+++||+++++++.+.+++.|+++.+++.||
T Consensus 255 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG 332 (537)
T PLN02246 255 IMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEK--YDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYG 332 (537)
T ss_pred EeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccc--cCccceeEEEEecCcCCHHHHHHHHHHcCCCeEecccc
Confidence 9999999999999999999999999999999876543322 23468999999999999999999999998889999999
Q ss_pred cccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccc
Q 012673 216 MTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVM 289 (458)
Q Consensus 216 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~ 289 (458)
+||++.+++.+........ ....+++|+|+++++++++|++ .|+.|||+++|+.++
T Consensus 333 ~tE~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~ 394 (537)
T PLN02246 333 MTEAGPVLAMCLAFAKEPF------------------PVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIM 394 (537)
T ss_pred ccccCcccccccccCCCCc------------------cccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchh
Confidence 9999865443211100000 0022358999999999999853 577899999999999
Q ss_pred hhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCc
Q 012673 290 LRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLT 369 (458)
Q Consensus 290 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 369 (458)
.||++++..+...+..++||+|||+++++++|++++.||.+|+|+.+|++|+|.+||+++.++|+|.+++|+++++...+
T Consensus 395 ~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~ 474 (537)
T PLN02246 395 KGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAG 474 (537)
T ss_pred ccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCC
Confidence 99999999888888788999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 370 EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 370 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
+.+++++++.++. ..+.+++++++++ .++.|++|+.++++ ++||+|++||++|+.|++++++
T Consensus 475 ~~~~~~v~~~~~~----------------~~~~~~l~~~l~~-~l~~~~~p~~i~~~-~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 475 EVPVAFVVRSNGS----------------EITEDEIKQFVAK-QVVFYKRIHKVFFV-DSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred ceeEEEEEeCCCC----------------CCCHHHHHHHHHh-hCcCccccceEEEe-ccCCCCCcchhhHHHHHHHHhc
Confidence 9999999877542 1346789999998 69999999988775 7899999999999999998753
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-55 Score=457.76 Aligned_cols=340 Identities=25% Similarity=0.321 Sum_probs=287.5
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC-
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~- 139 (458)
..++|+++++|||||||.||||+++|+++..........+++.++|++++.+|++|.+++ ..++.++..|+++++.+.
T Consensus 362 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~ 441 (718)
T PRK08043 362 QQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSP 441 (718)
T ss_pred CCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCc
Confidence 467999999999999999999999999998888777777889999999999999999998 457789999999998875
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.++++++|+++++|+++..+.+... . ...+++|.+++||+++++++.+.+.+.| ++++++.||+||+
T Consensus 442 ~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~--~--~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~YG~TE~ 516 (718)
T PRK08043 442 LHYRIVPELVYDRNCTVLFGTSTFLGNYARFAN--P--YDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYGVTEC 516 (718)
T ss_pred ccHHHHHHHHHhcCCeEEEchHHHHHHhhhhcC--c--ccccceEEEEEeCccCCHHHHHHHHHHc-CCCeecccCcccc
Confidence 567788999999999999999999887765421 1 2347899999999999999999999988 7999999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-CCCccEEEEeccccchhhhcC--c
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-SSHVGRILTRGAHVMLRYWDQ--F 296 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-~~~~Gel~v~g~~~~~gy~~~--~ 296 (458)
+..++.... .. ...+++|+|+|+++++++|.+ .++.|||+++|++++.|||++ +
T Consensus 517 ~~~~~~~~~---~~--------------------~~~~svG~p~pg~~~~i~d~~~~~~~Gel~v~g~~v~~GY~~~e~~ 573 (718)
T PRK08043 517 APVVSINVP---MA--------------------AKPGTVGRILPGMDARLLSVPGIEQGGRLQLKGPNIMNGYLRVEKP 573 (718)
T ss_pred cceEEecCC---cc--------------------cCCCCCCCcCCCCeeEEecCCCCCCceEEEEecCCccccccCCCCc
Confidence 765432211 00 012369999999999999876 456799999999999999983 3
Q ss_pred CC-------CCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCc
Q 012673 297 LA-------KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLT 369 (458)
Q Consensus 297 ~~-------~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 369 (458)
.. +......+|||+|||+|++++||+++++||++|+||++|++|+|.|||+++.+|+.+.++++++.+++.++
T Consensus 574 ~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~g 653 (718)
T PRK08043 574 GVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKG 653 (718)
T ss_pred ccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCC
Confidence 31 22223357999999999999999999999999999999999999999999999999999999999988889
Q ss_pred ceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 370 EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 370 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
+.+++++.- . ..+.++++++++++.|+.|++|+.++++ ++||+|++||++|+.|++.+.+
T Consensus 654 e~~v~~~~~-~------------------~~~~~~l~~~~~~~~l~~~~vP~~i~~v-~~lP~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 654 EALVLFTTD-S------------------ELTREKLQQYAREHGVPELAVPRDIRYL-KQLPLLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred ceEEEEEcC-c------------------ccCHHHHHHHHHhcCCCcccCCceEEEe-cccCcCCCCCcCHHHHHHHHhc
Confidence 988877641 1 1346789999987459999999998775 7899999999999999988755
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-55 Score=458.43 Aligned_cols=342 Identities=22% Similarity=0.284 Sum_probs=290.9
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHH-HhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecC-
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI-AIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIP- 138 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~- 138 (458)
..+++++|++|||||||.||||+++|+++..+..... ..+++.++|++++..|++|.+++ ..++.++..|+++++.+
T Consensus 142 ~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~ 221 (705)
T PRK06060 142 MGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSA 221 (705)
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCC
Confidence 4578999999999999999999999999987665543 45788899999999999999887 56788899999999876
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..++..++++++|+++++|+++..+++.... ..++++|.+++||+++++++.+.+.+.|+++++++.||+||
T Consensus 222 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE 297 (705)
T PRK06060 222 PVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP----DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTE 297 (705)
T ss_pred CCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccc
Confidence 47888889999999999999999999988865422 13468999999999999999999999997799999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~ 293 (458)
++..+....... . ...++|+|+++++++++|++ .|+.|||+++|++++.|||
T Consensus 298 ~~~~~~~~~~~~---~--------------------~~~~iG~p~~~~~v~i~d~~g~~~~~g~~GEl~i~g~~v~~GY~ 354 (705)
T PRK06060 298 VGQTFVSNRVDE---W--------------------RLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYW 354 (705)
T ss_pred cCceEEeccCCC---C--------------------CcCcccccCCCcEEEEECCCCCCCCCCCceEEEEccchhhhhhh
Confidence 975443221100 0 12258999999999999876 5778999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
++++.+. ..++||+|||+|++++||+++++||+||+||++|++|+|.+||.+|.+|++|.+++|++++++..++.++
T Consensus 355 ~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~ 431 (705)
T PRK06060 355 NRPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQ 431 (705)
T ss_pred CCCcccc---cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEE
Confidence 9987643 3679999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHH
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~ 448 (458)
+++++.++.... ....+++++++++ .|+.|++|..++++ ++||+|++||++|+.|++.+.
T Consensus 432 a~vv~~~~~~~~-------------~~~~~~i~~~l~~-~L~~~~~P~~i~~v-~~iP~t~~GKidr~~L~~~~~ 491 (705)
T PRK06060 432 AFLVATSGATID-------------GSVMRDLHRGLLN-RLSAFKVPHRFAVV-DRLPRTPNGKLVRGALRKQSP 491 (705)
T ss_pred EEEEeccccCcC-------------hHHHHHHHHHHHH-hCCCCcCCcEEEEe-ecCCCCcchhhHHHHHHhhcc
Confidence 999976542100 0124578889988 69999999998876 789999999999999998763
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-54 Score=441.96 Aligned_cols=349 Identities=25% Similarity=0.401 Sum_probs=304.3
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH--HHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS--SAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~--~~~~~l~~G~~~v~~~ 138 (458)
...++++++++|||||||.||+|+++|+++..+.......+++.++|++++.+|++|.+++. .++.++..|+++++.+
T Consensus 178 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~ 257 (536)
T PRK10946 178 PSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAP 257 (536)
T ss_pred CCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECC
Confidence 34678999999999999999999999999998888888888999999999999999998874 5788899999999988
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..++++++++++|++.++|.++..+++...........+++|.+++||+++++++.+.+.+.+ ++++++.||+||
T Consensus 258 ~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~YG~tE 336 (536)
T PRK10946 258 DPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQVFGMAE 336 (536)
T ss_pred CCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEeecccc
Confidence 8999999999999999999999999999987653333323456899999999999999999999988 799999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccC-CCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
++...... ..... ....++|.|+ +++.++++|++ .|+.|||+++|+.++.||
T Consensus 337 ~~~~~~~~--~~~~~--------------------~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~GY 394 (536)
T PRK10946 337 GLVNYTRL--DDSDE--------------------RIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTRGPYTFRGY 394 (536)
T ss_pred cceeeecC--CCccc--------------------cccccCCcccCCCceEEEECCCCCCCCCCCccEEEEecCccchhh
Confidence 75332211 11100 0123589998 78999998865 678899999999999999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
|+++..+...++.++||+|||+++++++|++++.||.+|+|+++|++|+|.+||.+|.++|+|.++++++++++..++.+
T Consensus 395 ~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~ 474 (536)
T PRK10946 395 YKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKS 474 (536)
T ss_pred cCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceE
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHh
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 451 (458)
++++++.++ .+.++++++++++.++.|++|..++++ +++|+|++||++|+.|++.+++..
T Consensus 475 ~a~vv~~~~------------------~~~~~l~~~~~~~~l~~~~~P~~~~~~-~~iP~t~~GKv~r~~L~~~~~~~~ 534 (536)
T PRK10946 475 CAFLVVKEP------------------LKAVQLRRFLREQGIAEFKLPDRVECV-DSLPLTAVGKVDKKQLRQWLASRA 534 (536)
T ss_pred EEEEEeCCC------------------CCHHHHHHHHHhCCccccccCcEEEEe-ccCCCCCCCcccHHHHHHHHHhhc
Confidence 999987653 346789999987459999999998876 789999999999999999887654
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=442.53 Aligned_cols=338 Identities=26% Similarity=0.412 Sum_probs=290.3
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCCh
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFES 142 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~ 142 (458)
.+++.++++|||||||.||||+++|.++..+.......+.+..+++++..+|++|.+|+..++.++..|+++++...+++
T Consensus 194 ~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~ 273 (537)
T PRK13382 194 TGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRRRFDP 273 (537)
T ss_pred CCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECCCcCH
Confidence 46789999999999999999999998887777777777788899999999999999999888899999999999888999
Q ss_pred HHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccc
Q 012673 143 KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSS 222 (458)
Q Consensus 143 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 222 (458)
..+++.|+++++|++.++|+++..|++............++|.+++||+++++++++.+.+.| +.++++.||+||++..
T Consensus 274 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~ 352 (537)
T PRK13382 274 EATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEAGMI 352 (537)
T ss_pred HHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHc-CCcEEecccccccCcc
Confidence 999999999999999999999999987542211112235899999999999999999999999 6789999999999865
Q ss_pred eeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhcCcC
Q 012673 223 LTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWDQFL 297 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~~~~ 297 (458)
++.+..... ...+++|+|+++++++++|++ .|+.|||+++|++++.||+ +.
T Consensus 353 ~~~~~~~~~----------------------~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~--~~ 408 (537)
T PRK13382 353 ATATPADLR----------------------AAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGYT--SG 408 (537)
T ss_pred eecChhHhc----------------------cCCCCccccCcCcEEEEECCCCCCCCCCCeeEEEEEcCCcccCcc--cc
Confidence 543221100 012369999999999999876 5678999999999999998 33
Q ss_pred CCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEE
Q 012673 298 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVR 377 (458)
Q Consensus 298 ~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~ 377 (458)
.+... .++||+|||+++++++|++++.||+||+||.+|++|+|.+||++|.+||+|.+++|++++++..++.++++++
T Consensus 409 ~~~~~--~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv 486 (537)
T PRK13382 409 STKDF--HDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVV 486 (537)
T ss_pred chhhc--cCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEE
Confidence 44332 3689999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred eccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 378 LRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
+.++. ....+++++++++ .|+.|++|+.++++ +++|+|++||++|+.|++
T Consensus 487 ~~~~~----------------~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 487 LKPGA----------------SATPETLKQHVRD-NLANYKVPRDIVVL-DELPRGATGKILRRELQA 536 (537)
T ss_pred ECCCC----------------CCCHHHHHHHHHH-hccCCCCCcEEEEe-ccCCCCCCCCCcHHhhCC
Confidence 86542 1346789999998 69999999998775 789999999999999874
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=436.92 Aligned_cols=336 Identities=26% Similarity=0.448 Sum_probs=293.4
Q ss_pred CCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCChH
Q 012673 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESK 143 (458)
Q Consensus 64 ~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~ 143 (458)
++++++++|||||||.||+|+++|+++..+.......+++.++|+++...|++|..++..++.+++.|+++++.+.+++.
T Consensus 142 ~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~ 221 (487)
T PRK07638 142 QNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIPN 221 (487)
T ss_pred CCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCCCCHH
Confidence 56789999999999999999999999988887777788899999999999999998888888999999999999999999
Q ss_pred HHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccce
Q 012673 144 SALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSL 223 (458)
Q Consensus 144 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 223 (458)
.+++.|+++++|++.++|+++..|.+.. .. ..+.+.++++|+++++++.+++.+.|+++++++.||+||++..+
T Consensus 222 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~---~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 295 (487)
T PRK07638 222 QVLDKLETENISVMYTVPTMLESLYKEN---RV---IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVT 295 (487)
T ss_pred HHHHHHHHcCCeEEEeCcHHHHHHHhCc---Cc---CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceE
Confidence 9999999999999999999999998761 11 23566788999999999999999999889999999999998654
Q ss_pred eeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhcCcCC
Q 012673 224 TFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWDQFLA 298 (458)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~~~~~ 298 (458)
...... . . ....++|+|+++++++|+|++ .|+.|||+++|+.++.|||+++..
T Consensus 296 ~~~~~~-~-~--------------------~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~ 353 (487)
T PRK07638 296 ALVDEE-S-E--------------------RRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVL 353 (487)
T ss_pred Eecccc-c-C--------------------CCCCCCCcccCCcEEEEECCCCCCCCCCCCeEEEEecccceeeecCCHHH
Confidence 432211 0 0 022368999999999999876 578999999999999999998876
Q ss_pred CCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEe
Q 012673 299 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRL 378 (458)
Q Consensus 299 ~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~ 378 (458)
+... ..++||+|||+++++++|+++++||++|+|+++|++|+|.+||+++.++|+|.+++|++++++..++.++++++.
T Consensus 354 ~~~~-~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~ 432 (487)
T PRK07638 354 AREL-NADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG 432 (487)
T ss_pred Hhhh-ccCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC
Confidence 5543 467999999999999999999999999999999999999999999999999999999999998888889888864
Q ss_pred ccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 379 RESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
. .+.+++++++++ .+++|++|+.++++ +++|+|++||++|+.|++.+.+.
T Consensus 433 ~--------------------~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~iP~t~~GKv~r~~L~~~~~~~ 482 (487)
T PRK07638 433 S--------------------ATKQQLKSFCLQ-RLSSFKIPKEWHFV-DEIPYTNSGKIARMEAKSWIENQ 482 (487)
T ss_pred C--------------------CCHHHHHHHHHH-HhhcccCCcEEEEe-cccCCCCcccccHHHHHHHHhcc
Confidence 2 246789999988 69999999988775 78999999999999998776543
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=441.92 Aligned_cols=355 Identities=22% Similarity=0.299 Sum_probs=275.5
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCC-CCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYG-EDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~-~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
..++|+++|+|||||||.||||+++|+++..+.......+++. .+|++++.+|++|.+++..++.+++.|+++++.+.
T Consensus 149 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~ 228 (525)
T PRK05851 149 PDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTT 228 (525)
T ss_pred CCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHH
Confidence 4678999999999999999999999999998888878888888 89999999999999999888899999999998763
Q ss_pred -C--ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhh---C--CCCcee
Q 012673 140 -F--ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS---F--PKAKLI 211 (458)
Q Consensus 140 -~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~---~--~~~~i~ 211 (458)
+ ++..+++.++++++|++...|.++..+.+..... ....++++|.+++||+++++++.+++.+. + +..+++
T Consensus 229 ~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~-~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~ 307 (525)
T PRK05851 229 AFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRV-SDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAA 307 (525)
T ss_pred HHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccc-cCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcc
Confidence 4 5778999999999998755444444443332211 11234689999999999999999988874 3 224599
Q ss_pred eccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEec
Q 012673 212 SAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRG 285 (458)
Q Consensus 212 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g 285 (458)
+.||+||++..++...... .... .... ...........++|+|+++++++|+|++ .|+.|||+++|
T Consensus 308 ~~YG~TE~~~~~~~~~~~~-~~~~-----~~~~--~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g 379 (525)
T PRK05851 308 PSYGLAESTCAVTVPVPGI-GLRV-----DEVT--TDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRG 379 (525)
T ss_pred cccchhhhceEEEecCCCC-Ccee-----eeec--cccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEec
Confidence 9999999976443221100 0000 0000 0000001123479999999999999865 35789999999
Q ss_pred cccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecC
Q 012673 286 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 365 (458)
Q Consensus 286 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 365 (458)
++++.|||+++..+ .++||+|||+++++ +|+++++||+||+||++|++|+|.|||++|.+||+|.+++|+++++
T Consensus 380 ~~~~~GY~~~~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~ 453 (525)
T PRK05851 380 ASMMSGYLGQAPID-----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGT 453 (525)
T ss_pred CchhhccccCCccC-----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEe
Confidence 99999999987543 46899999999997 7999999999999999999999999999999999999999999998
Q ss_pred CCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccc--cCCeEEEEee-CCCCCCCcccchHHH
Q 012673 366 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF--KAPRLFVLWR-KPFPLTSTGKIRRDE 442 (458)
Q Consensus 366 ~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~--~~p~~~~~~~-~~lP~t~~GKv~r~~ 442 (458)
+.+++.+.++++..... .+.+++++++++ .++.+ ++|+.++++. ++||+|++||++|+.
T Consensus 454 ~~~~~~~~~~v~~~~~~-----------------~~~~~~~~~~~~-~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~ 515 (525)
T PRK05851 454 GEGSARPGLVIAAEFRG-----------------PDEAGARSEVVQ-RVASECGVVPSDVVFVAPGSLPRTSSGKLRRLA 515 (525)
T ss_pred cCCCCceeEEEEEEecC-----------------cchHHHHHHHHH-HHHHHhCCCccEEEEECCCCcCcCcchHHHHHH
Confidence 88888877776654210 123455566665 46665 9999887763 179999999999999
Q ss_pred HHHHHHH
Q 012673 443 VRREVMS 449 (458)
Q Consensus 443 l~~~~~~ 449 (458)
|++.+++
T Consensus 516 L~~~~~~ 522 (525)
T PRK05851 516 VKRSLEA 522 (525)
T ss_pred HHHHHHh
Confidence 9988754
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-54 Score=441.29 Aligned_cols=349 Identities=26% Similarity=0.461 Sum_probs=301.0
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 139 (458)
...++++++++|||||||.||+|+++|++++.++......+++..+|++++.+|++|.+|+ ..++.++..|+++++.+.
T Consensus 186 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~ 265 (546)
T PRK08314 186 TAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPR 265 (546)
T ss_pred CCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCC
Confidence 3467899999999999999999999999999888887778889999999999999999997 567789999999999999
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.++++++|++.++|.++..++....... ..++++|.+++||+++++++.+++.+.| ++++++.||+||+
T Consensus 266 ~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~--~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~ 342 (546)
T PRK08314 266 WDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAE--RDLSSLRYIGGGGAAMPEAVAERLKELT-GLDYVEGYGLTET 342 (546)
T ss_pred CCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccc--cCchhhheeeeccccCCHHHHHHHHHHc-CCcEEeccccccc
Confidence 999999999999999999999999998876532222 2346899999999999999999999998 7899999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhhh
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy~ 293 (458)
+.......... ....++|.|+++++++++|++ .++.|||+++|++++.||+
T Consensus 343 ~~~~~~~~~~~-----------------------~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~ 399 (546)
T PRK08314 343 MAQTHSNPPDR-----------------------PKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYW 399 (546)
T ss_pred ccceecCCCcC-----------------------CCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhcccc
Confidence 86543221100 012358999999999999854 4678999999999999999
Q ss_pred cCcCCCCccc---CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcc
Q 012673 294 DQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 370 (458)
Q Consensus 294 ~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 370 (458)
+++..+...+ ++.+||+|||+|+++++|++++.||+||+|+++|++|+|.+||+++.++|+|.+++|++.++...++
T Consensus 400 ~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~ 479 (546)
T PRK08314 400 NRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGE 479 (546)
T ss_pred CChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCc
Confidence 9987776554 3456999999999999999999999999999999999999999999999999999999999988889
Q ss_pred eEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 371 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 371 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
.+++++++.++.. ...+.++++++|++ .|++|++|+.++++ ++||+|++||++|+.|++..+..
T Consensus 480 ~~~a~v~~~~~~~--------------~~~~~~~l~~~~~~-~l~~~~~P~~~~~v-~~iP~t~~GKv~r~~L~~~~~~~ 543 (546)
T PRK08314 480 TVKAVVVLRPEAR--------------GKTTEEEIIAWARE-HMAAYKYPRIVEFV-DSLPKSGSGKILWRQLQEQEKAR 543 (546)
T ss_pred eeEEEEEECCCCC--------------CCCCHHHHHHHHHH-hcccCCCCcEEEEe-cCCCCCCccceeHHHHHHHHhhh
Confidence 9999999876521 01335789999998 79999999998876 77999999999999999877655
Q ss_pred h
Q 012673 451 L 451 (458)
Q Consensus 451 ~ 451 (458)
.
T Consensus 544 ~ 544 (546)
T PRK08314 544 A 544 (546)
T ss_pred c
Confidence 3
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=439.39 Aligned_cols=341 Identities=26% Similarity=0.409 Sum_probs=296.8
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH--HHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS--SAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~--~~~~~l~~G~~~v~~~ 138 (458)
...++|+++++|||||||.||+|+++|.++..+.......+.++.+|++++.+|++|.+++. .++.++..|+++++.+
T Consensus 179 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~ 258 (527)
T TIGR02275 179 PTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAP 258 (527)
T ss_pred CCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECC
Confidence 34679999999999999999999999999988888777888899999999999999999985 4788899999999988
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..+++.++++++|++.++|.++..+++...... ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||
T Consensus 259 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~tE 335 (527)
T TIGR02275 259 DPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR--YDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQQVFGMAE 335 (527)
T ss_pred CCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC--CCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEEeeeccCc
Confidence 8999999999999999999999999998887654332 2457899999999999999999999988 799999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccC-CCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
++...... ..... ....++|.|+ ++.+++++|++ .|+.|||+++|++++.||
T Consensus 336 ~~~~~~~~--~~~~~--------------------~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~Gei~v~g~~~~~gY 393 (527)
T TIGR02275 336 GLVNYTRL--DDPAE--------------------IIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGY 393 (527)
T ss_pred cCccccCC--CCccc--------------------cccccCCCCCCCCceEEEECCCCCCCCCCCceEEEecCCccchhh
Confidence 65332211 10000 0122589999 47889998875 578899999999999999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
|++++.+...++.++||+|||+++++++|++++.||.+|+|+++|++|+|.+||++|.+||+|.+++|++++++..++.+
T Consensus 394 ~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~ 473 (527)
T TIGR02275 394 YKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKS 473 (527)
T ss_pred cCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEE
Confidence 99999988888889999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHH
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~ 444 (458)
++++++.++. .+.++|+++++++.++.|++|..++++ ++||+|++||++|+.|+
T Consensus 474 ~a~vv~~~~~-----------------~~~~~l~~~l~~~~l~~~~~P~~i~~v-~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 474 CAFIVVRDPA-----------------LKAAQLRRFLRERGLAEYKLPDRVEFI-DSLPLTAVGKIDKKALR 527 (527)
T ss_pred EEEEEECCCC-----------------CCHHHHHHHHHhCCCccccCCCEEEEe-ccCCCCCccceeHHhcC
Confidence 9999886541 346789999987569999999998876 78999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-54 Score=440.32 Aligned_cols=346 Identities=27% Similarity=0.462 Sum_probs=294.0
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhc--CCC-CceEEeccchhhHhhh-HHHHHHHhcCceEEec
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGE-DDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFI 137 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~--~~~-~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~ 137 (458)
..++|+++++|||||||.||||+++|+++..+.......++ +.. .+++++.+|++|.+++ ..++..+..|++.++.
T Consensus 204 ~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~ 283 (562)
T PRK05677 204 PQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILI 283 (562)
T ss_pred CCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 46799999999999999999999999999776655544443 333 3688999999999998 4566778888877666
Q ss_pred C-CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 138 P-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 138 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
+ .+++..+++.|+++++|+++++|+++..++....... ...+++|.+++||+++++++.+.+.+.+ ++++++.||+
T Consensus 284 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~ 360 (562)
T PRK05677 284 SNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRK--LDFSALKLTLSGGMALQLATAERWKEVT-GCAICEGYGM 360 (562)
T ss_pred cCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCccccc--CChhhceEEEEcCccCCHHHHHHHHHHc-CCCeeccCCc
Confidence 5 4789999999999999999999999998876532222 2346899999999999999999999988 7999999999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchh
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLR 291 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~g 291 (458)
||++..+....... ...+++|.|+++++++++|++ .|+.|||+++|+.++.|
T Consensus 361 tE~~~~~~~~~~~~-----------------------~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~g 417 (562)
T PRK05677 361 TETSPVVSVNPSQA-----------------------IQVGTIGIPVPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKG 417 (562)
T ss_pred cccCcceeecCccC-----------------------CCCCccCccCCCCEEEEECCCCCCCCCCCCeEEEEecCccchh
Confidence 99886554321110 012258999999999999875 57789999999999999
Q ss_pred hhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcce
Q 012673 292 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEM 371 (458)
Q Consensus 292 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 371 (458)
|+++++.+...+..++||+|||+|+++++|++++.||++|+|+++|++|+|.+||++|.+||+|.+++|++++++..++.
T Consensus 418 Y~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~ 497 (562)
T PRK05677 418 YWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEA 497 (562)
T ss_pred hcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCce
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHh
Q 012673 372 VVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451 (458)
Q Consensus 372 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 451 (458)
+++++++.++. ..+.+++++++++ .|++|++|+.++++ ++||+|++||++|++|++.+.+++
T Consensus 498 ~~~~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~iP~t~sGKi~r~~L~~~~~~~~ 559 (562)
T PRK05677 498 IKVFVVVKPGE----------------TLTKEQVMEHMRA-NLTGYKVPKAVEFR-DELPTTNVGKILRRELRDEELKKA 559 (562)
T ss_pred EEEEEEeCCCC----------------CCCHHHHHHHHHH-hhhhccCCcEEEEe-ccCCCCCcccccHHHHHHHHHHhc
Confidence 99999876541 1456789999998 69999999988775 789999999999999999887654
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-54 Score=453.15 Aligned_cols=365 Identities=25% Similarity=0.328 Sum_probs=279.5
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhh----c-CCCCceEEeccchhhHhhhHHHHHHHhcCceEE
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV----G-YGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHV 135 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~----~-~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v 135 (458)
...++|+++|+|||||||.||||++||+++.++.......+ + +.++|++++++|++|++++......+..|+++.
T Consensus 260 ~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~ 339 (700)
T PTZ00216 260 PENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIG 339 (700)
T ss_pred CCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEE
Confidence 34689999999999999999999999999987766554433 2 367899999999999998865555677777665
Q ss_pred ecCCCChHHHHH-------HHHHhcceEEeechHHHHHHHHHHHhhc-------------------------c-------
Q 012673 136 FIPKFESKSALE-------AVEQHCVTSLITVPAIMADLATLIRVKK-------------------------T------- 176 (458)
Q Consensus 136 ~~~~~~~~~~~~-------~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------~------- 176 (458)
+. ++..+++ .+++++||++.++|.++..+.+...... .
T Consensus 340 ~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 416 (700)
T PTZ00216 340 FG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNE 416 (700)
T ss_pred EC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHH
Confidence 53 4555544 6899999999999999998875432100 0
Q ss_pred -------ccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCC
Q 012673 177 -------WKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPN 249 (458)
Q Consensus 177 -------~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (458)
....+++|.+++||+++++++.+.++..+ + +++++||+||+++..+......
T Consensus 417 ~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG~TEt~~~~~~~~~~~------------------- 475 (700)
T PTZ00216 417 KVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQGWGLTETVCCGGIQRTGD------------------- 475 (700)
T ss_pred HHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhccCcccccccccccCCCC-------------------
Confidence 00015799999999999999998887777 5 9999999999976543321110
Q ss_pred CCCCCCceEecccCCCceEEEecCC-------CCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCc
Q 012673 250 SVHQPQGVCVGKPAPHVELKVCSDG-------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGN 322 (458)
Q Consensus 250 ~~~~~~~~~~G~p~~~~~~~i~d~~-------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 322 (458)
...+++|+|+++++++|+|.+ .++.|||+++|++++.|||++++.|.+.++.+|||+|||+|++++||+
T Consensus 476 ----~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~ 551 (700)
T PTZ00216 476 ----LEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGT 551 (700)
T ss_pred ----CCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCc
Confidence 012369999999999999864 346799999999999999999999999998899999999999999999
Q ss_pred EEEEeeccceee-eCceeeCcHHHHHHHhcCcCcceE--EEEeecCCCCcceEEEEEEecccc--ccccccccccchhhh
Q 012673 323 VWLVGRRNGRIK-SGGENVYPEEVEAVLLQHPGIIGI--VVVGIANARLTEMVVACVRLRESW--QWSESNCDQSSKNKE 397 (458)
Q Consensus 323 l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~--~v~~~~~~~~~~~~~a~v~~~~~~--~~~~~~~~~~~~~~~ 397 (458)
++++||+||+|| .+|++|+|.+||++|.+||.|.++ +|+..++ ...++|++++.... .+..+.... ...++
T Consensus 552 l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~---~~~l~a~vv~~~~~~~~~~~~~~~~-~~~~~ 627 (700)
T PTZ00216 552 LRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA---RSYICALVLTDEAKAMAFAKEHGIE-GEYPA 627 (700)
T ss_pred EEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC---CceEEEEEecCHHHHHHHHHHcCCC-CCHHH
Confidence 999999999999 899999999999999999999973 4444322 35688888876542 111111000 00000
Q ss_pred -------hhhhHHHHHHHhhhcccccccCCeEEEEeeCCCC-----CCCcccchHHHHHHHHHHHhhcCCCC
Q 012673 398 -------LLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPSN 457 (458)
Q Consensus 398 -------~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~~~~~ 457 (458)
...-.+++.+..++.++..|..++.|.++.++|- +|+|+|++|+.+++.|++.|++||++
T Consensus 628 ~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~~ 699 (700)
T PTZ00216 628 ILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELFAD 699 (700)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHHHHhcC
Confidence 0011233344444447899999999988776663 69999999999999999999999975
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-54 Score=446.70 Aligned_cols=358 Identities=19% Similarity=0.233 Sum_probs=289.7
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHH-HHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecC-
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQS-LAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIP- 138 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~-~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~- 138 (458)
.+++|+++++|||||||.||||+++|.++.... ......++++++|++++..|+.|..+. ..++.+++.|+++++.+
T Consensus 230 ~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g 309 (629)
T PRK10524 230 LESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEG 309 (629)
T ss_pred eCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECC
Confidence 467899999999999999999999999875443 334456688899999999999998876 56788999999998876
Q ss_pred ---CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccc
Q 012673 139 ---KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYG 215 (458)
Q Consensus 139 ---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG 215 (458)
.+++..+++.|+++++|+++++|+++..|.+...........+++|.+++||+++++++.+++.+.+ ++++++.||
T Consensus 310 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG 388 (629)
T PRK10524 310 LPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNYW 388 (629)
T ss_pred CCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeEeccc
Confidence 3578999999999999999999999998876422111112357899999999999999999999988 789999999
Q ss_pred cccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecC-C-----CCCccEEEEecc---
Q 012673 216 MTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-G-----SSHVGRILTRGA--- 286 (458)
Q Consensus 216 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~-----~~~~Gel~v~g~--- 286 (458)
+||++..+......... . ....+++|.|+++++++++|+ + .|+.|||+++||
T Consensus 389 ~TE~~~~~~~~~~~~~~--~-----------------~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~ 449 (629)
T PRK10524 389 QTETGWPILAIARGVED--R-----------------PTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPP 449 (629)
T ss_pred cccccchhhcCCCCccc--C-----------------cCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCCh
Confidence 99998433221110000 0 012336899999999999997 3 578899999998
Q ss_pred ccchhhhcCcCCCCccc---CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEee
Q 012673 287 HVMLRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 363 (458)
Q Consensus 287 ~~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 363 (458)
+.+.+||++++.....+ ..++||+|||++++++||+++++||+||+||++|++|+|.+||++|.+||+|.+++|+++
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~ 529 (629)
T PRK10524 450 GCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGV 529 (629)
T ss_pred hhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEcc
Confidence 57789998876543322 246899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHH
Q 012673 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 443 (458)
Q Consensus 364 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l 443 (458)
+++..++.++++++++++...... .......++|++++++ .|++|++|+.++++ ++||+|++||++|+.|
T Consensus 530 ~d~~~g~~~~~~vv~~~~~~~~~~--------~~~~~~~~~i~~~~~~-~l~~~~~P~~i~~v-~~lP~T~sGKi~R~~L 599 (629)
T PRK10524 530 KDALKGQVAVAFVVPKDSDSLADR--------EARLALEKEIMALVDS-QLGAVARPARVWFV-SALPKTRSGKLLRRAI 599 (629)
T ss_pred ccCCCCeEEEEEEEECCCCccccc--------cchHHHHHHHHHHHHh-hcCCCcCCCEEEEc-CCCCCCCCcchHHHHH
Confidence 999889999999998765211000 0011235678999988 69999999998775 7899999999999999
Q ss_pred HHHHHH
Q 012673 444 RREVMS 449 (458)
Q Consensus 444 ~~~~~~ 449 (458)
++.+..
T Consensus 600 ~~~~~~ 605 (629)
T PRK10524 600 QAIAEG 605 (629)
T ss_pred HHHHcC
Confidence 998753
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=429.40 Aligned_cols=336 Identities=27% Similarity=0.415 Sum_probs=293.3
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~ 140 (458)
..++|+++++|||||||.||+|+++|+++..+.......+++..+|++++.+|++|.+|+ ..++.++..|+++++.+.+
T Consensus 125 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~ 204 (471)
T PRK07787 125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRP 204 (471)
T ss_pred CCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCC
Confidence 457899999999999999999999999998888777788889999999999999999887 4688999999999999889
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.|+ +++|++.++|+++..+.+.... ...+.++|.+++||+++++++++.+.+.+ +.++++.||+||++
T Consensus 205 ~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~---~~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~ 279 (471)
T PRK07787 205 TPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA---ARALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETL 279 (471)
T ss_pred CHHHHHHHHh-hCceEEEcchHHHHHHHhCccc---cccccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccC
Confidence 9999999999 9999999999999988864221 12346899999999999999999999988 78999999999997
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CC-CccEEEEeccccchhhh
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SS-HVGRILTRGAHVMLRYW 293 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~-~~Gel~v~g~~~~~gy~ 293 (458)
...+.... .. ....++|+|+++++++|+|++ .+ .+|||+++|++++.||+
T Consensus 280 ~~~~~~~~---~~--------------------~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~ 336 (471)
T PRK07787 280 ITLSTRAD---GE--------------------RRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYL 336 (471)
T ss_pred cceecCCC---Cc--------------------ccCCcccccCCCcEEEEECCCCCCCCCCCCCceEEEEECcccchhhc
Confidence 54322110 00 012259999999999999876 22 37999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeec-cceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRR-NGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
++++.+...+..++||+|||++++++||+++++||+ +|+++.+|++|+|.+||++|.+++.|.+++|++.++...++.+
T Consensus 337 ~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~ 416 (471)
T PRK07787 337 NRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRI 416 (471)
T ss_pred CChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEE
Confidence 999999888888899999999999999999999996 8999999999999999999999999999999999988888999
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
++++++.+. .+.+++.+++++ .+++|++|..++++ ++||+|++||++|+.|++
T Consensus 417 ~a~v~~~~~------------------~~~~~l~~~l~~-~l~~~~~P~~i~~~-~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 417 VAYVVGADD------------------VAADELIDFVAQ-QLSVHKRPREVRFV-DALPRNAMGKVLKKQLLS 469 (471)
T ss_pred EEEEEeCCC------------------CCHHHHHHHHHh-hcccccCCcEEEEe-ccCCCCCCccccHHHhcc
Confidence 999987332 346789999998 69999999987765 789999999999999976
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=434.04 Aligned_cols=352 Identities=25% Similarity=0.383 Sum_probs=290.6
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHH--HHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSL--AKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 138 (458)
...++++++++|||||||.||+|++||+++..+.. .....+++.++|++++.+|++|.+++...+.++..|+++++.+
T Consensus 172 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~ 251 (539)
T PRK07008 172 RFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPG 251 (539)
T ss_pred cCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceEEEec
Confidence 34678999999999999999999999999864432 2334667888999999999999988776778899999998864
Q ss_pred -CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 139 -KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 139 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
.+++..+++.++++++|++.++|+++..+++..+... ..++++|.++++|+++++++++.+.+.+ ++++++.||+|
T Consensus 252 ~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~~~YG~t 328 (539)
T PRK07008 252 PDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG--LRFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVIHAWGMT 328 (539)
T ss_pred CCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC--CCcccceEEEEcCCCCCHHHHHHHHHHh-CCceecccccc
Confidence 5789999999999999999999999999987654432 2457899999999999999999999988 79999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCC-------CCccEEEEeccccch
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS-------SHVGRILTRGAHVML 290 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~-------~~~Gel~v~g~~~~~ 290 (458)
|++..++.+.......... . . .......++|.|+|+++++++|++. ++.|||+++|++++.
T Consensus 329 E~~~~~~~~~~~~~~~~~~---~--------~-~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~ 396 (539)
T PRK07008 329 EMSPLGTLCKLKWKHSQLP---L--------D-EQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVID 396 (539)
T ss_pred cccccceecccccccccCC---c--------h-hhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCccch
Confidence 9986544332111000000 0 0 0000123589999999999998752 246999999999999
Q ss_pred hhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcc
Q 012673 291 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 370 (458)
Q Consensus 291 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 370 (458)
||++++... + .++||+|||++++++||++++.||++|+|+.+|++|+|.+||++|.++|.|.++++++++++.+++
T Consensus 397 gy~~~~~~~---~-~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~ 472 (539)
T PRK07008 397 RYFRGDASP---L-VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDE 472 (539)
T ss_pred hhcCChhhh---h-cCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhcc
Confidence 999987321 2 368999999999999999999999999999999999999999999999999999999999988888
Q ss_pred eEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 371 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 371 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
.++++++..++. ..+.+++++++++ .+++|++|+.++++ ++||+|++||++|+.|++++.+
T Consensus 473 ~~~~~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~lP~t~sgKi~r~~l~~~~~~ 533 (539)
T PRK07008 473 RPLLVVVKRPGA----------------EVTREELLAFYEG-KVAKWWIPDDVVFV-DAIPHTATGKLQKLKLREQFRD 533 (539)
T ss_pred ceEEEEEeCCCC----------------ccCHHHHHHHHHh-hcccccCCeEEEEe-cCCCCCCccceeHHHHHHHHHh
Confidence 999998876542 1346789999998 69999999988775 7899999999999999998875
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=432.15 Aligned_cols=344 Identities=32% Similarity=0.544 Sum_probs=297.7
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEecCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~~ 140 (458)
..++++++++|||||||.||+|.++|.++..+.......+++..+|++++.+|++|.+|+. ..+.++..|+++++.+.+
T Consensus 146 ~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~ 225 (496)
T PRK06839 146 KNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKF 225 (496)
T ss_pred CCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCC
Confidence 3568999999999999999999999999877666666677889999999999999999874 457889999999998889
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.++++++|++.++|+++..+++...... ...+++|.+++||+++++++.+.+.+. ++++++.||+||++
T Consensus 226 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~ 301 (496)
T PRK06839 226 EPTKALSMIEKHKVTVVMGVPTIHQALINCSKFET--TNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETS 301 (496)
T ss_pred CHHHHHHHHHhhCCeEEEehHHHHHHHHhCccccc--CCCcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCC
Confidence 99999999999999999999999999987643322 245789999999999999999999886 78999999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhcC
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWDQ 295 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~~ 295 (458)
..++........ ....++|+|+++++++++|++ .|+.|||+++|+.++.||+++
T Consensus 302 ~~~~~~~~~~~~---------------------~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~ 360 (496)
T PRK06839 302 PTVFMLSEEDAR---------------------RKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNR 360 (496)
T ss_pred cceEeccccccc---------------------ccCCCCcccCCCceEEEECCCcCCCCCCCceEEEEECCCcchhhcCC
Confidence 654332211100 012368999999999999875 578899999999999999999
Q ss_pred cCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEE
Q 012673 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVAC 375 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~ 375 (458)
++.+...+ .+|||+|||+++++++|++++.||.+|+|+.+|++|+|.+||++|.++|+|.++++++++++..++.++++
T Consensus 361 ~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~ 439 (496)
T PRK06839 361 PDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAF 439 (496)
T ss_pred hHHHHHHH-cCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEE
Confidence 88877665 57899999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 376 VRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 376 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
++++++. ..+.+++++++++ .|++|++|+.++++ +++|+|++||++|++|+++.++
T Consensus 440 v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~P~~~~~v-~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 440 IVKKSSS----------------VLIEKDVIEHCRL-FLAKYKIPKEIVFL-KELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred EEECCCC----------------CCCHHHHHHHHHh-hCcCCCCCcEEEEe-ccCCCCccccccHHHHHHHhhc
Confidence 9987642 1345789999998 69999999998775 7899999999999999987653
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=433.09 Aligned_cols=341 Identities=28% Similarity=0.431 Sum_probs=294.0
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFE 141 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~ 141 (458)
..++++++++|||||||.||+|+++|+++..+.......+++..+|++++.+|++|.+++..++.++..|+++++.+.++
T Consensus 158 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~ 237 (515)
T TIGR03098 158 VIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHDYLL 237 (515)
T ss_pred CCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcCCCC
Confidence 35689999999999999999999999999888777777788899999999999999999988899999999999998899
Q ss_pred hHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCcc
Q 012673 142 SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSS 221 (458)
Q Consensus 142 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 221 (458)
+..+++.++++++|++.++|+++..|.+..... ....++|.++++|+++++++.+.+++.++++.+++.||+||++.
T Consensus 238 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~ 314 (515)
T TIGR03098 238 PRDVLKALEKHGITGLAAVPPLWAQLAQLDWPE---SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFR 314 (515)
T ss_pred HHHHHHHHHHcCCceEecChHHHHHHHhcccCC---CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccc
Confidence 999999999999999999999999887642111 23468999999999999999999999998889999999999875
Q ss_pred ceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhcCc
Q 012673 222 SLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWDQF 296 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~~~ 296 (458)
...... ... .....++|+|++++++++++++ .++.|||+++|+.++.|||+++
T Consensus 315 ~~~~~~-~~~---------------------~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~gy~~~~ 372 (515)
T TIGR03098 315 STYLPP-EEV---------------------DRRPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDP 372 (515)
T ss_pred eEeccc-ccc---------------------cCCCCCcceecCCCEEEEECCCCCCCCCCCceEEEEcCchhhccccCCc
Confidence 332211 000 0122369999999999999865 4788999999999999999988
Q ss_pred CCCCcccC-----------CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecC
Q 012673 297 LAKPSVST-----------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 365 (458)
Q Consensus 297 ~~~~~~~~-----------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 365 (458)
..+...+. +++||+|||+++++++|++++.||.+|+|+.+|++|+|.+||+++.++|.|.+++|+++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~ 452 (515)
T TIGR03098 373 EKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPD 452 (515)
T ss_pred hhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccC
Confidence 76654432 2458999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 366 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 366 ~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
+..++.++++++..++. ..+.+++++++++ .|+++++|..++++ ++||+|++||++|++|++
T Consensus 453 ~~~g~~~~~~~~~~~~~----------------~~~~~~l~~~l~~-~l~~~~~p~~i~~v-~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 453 PTLGQAIVLVVTPPGGE----------------ELDRAALLAECRA-RLPNYMVPALIHVR-QALPRNANGKIDRKALAA 514 (515)
T ss_pred cccCceEEEEEEeCCCC----------------CCCHHHHHHHHHh-hCccccCCCEEEEe-ccCCCCCCCCCcHHHhcc
Confidence 88899999998865431 2456789999998 69999999988775 779999999999999975
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=431.83 Aligned_cols=344 Identities=31% Similarity=0.518 Sum_probs=300.8
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~ 139 (458)
...++++++++|||||||.||+|.++|.++..........++++++|++++.+|++|.+++. .++.++..|+++++.+.
T Consensus 162 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 241 (513)
T PRK07656 162 EVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPV 241 (513)
T ss_pred CCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCc
Confidence 35678999999999999999999999999988888778888999999999999999999974 57889999999999888
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCC-ceeecccccc
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKA-KLISAYGMTE 218 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~-~i~~~YG~tE 218 (458)
+++..+++.|+++++|++.++|.++..+.+....... ..+++|.+++||+++++++++.+.+.| ++ .+++.||+||
T Consensus 242 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~--~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~~YG~tE 318 (513)
T PRK07656 242 FDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAE--DLSSLRLAVTGAASMPVALLERFESEL-GVDIVLTGYGLSE 318 (513)
T ss_pred CCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCC--CccceeeEEecCCCCCHHHHHHHHHHc-CCCceEeEEcccc
Confidence 9999999999999999999999999999887543332 457899999999999999999999999 56 8999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~ 293 (458)
++++++.+....... ....++|.|+++++++++|++ .|+.|||+++|+.++.||+
T Consensus 319 ~~~~~~~~~~~~~~~--------------------~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~ 378 (513)
T PRK07656 319 ASGVTTFNRLDDDRK--------------------TVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYY 378 (513)
T ss_pred CCCceeecCcccccc--------------------ccCCCccccCCCcEEEEECCCCCCCCCCCceEEEEEcchhhhhhc
Confidence 987666543221100 011258999999999999865 4688999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
+++..+...+..++||+|||+++++++|+++++||.+|+|+++|.+++|.+||++|.++++|.+++|++.+++..++.++
T Consensus 379 ~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~ 458 (513)
T PRK07656 379 DDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGK 458 (513)
T ss_pred CCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEE
Confidence 99888877777789999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
++++.+++. ..+.+++.+++++ .|+++++|..++++ +++|+|++||++|+.|++
T Consensus 459 ~~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 459 AYVVLKPGA----------------ELTEEELIAYCRE-HLAKYKVPRSIEFL-DELPKNATGKVLKRALRE 512 (513)
T ss_pred EEEEECCCC----------------CCCHHHHHHHHHh-hcccccCCCEEEEe-cCCCCCCccceeHHHHhc
Confidence 999876431 1446789999988 69999999987775 789999999999999975
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-53 Score=434.91 Aligned_cols=356 Identities=25% Similarity=0.408 Sum_probs=294.4
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHH--HHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLA--KIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 138 (458)
...++++++++|||||||.||||+++|+++..+... ....+++..+|++++.+|++|.+++...+.++..|+++++.+
T Consensus 177 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~ 256 (576)
T PRK05620 177 ELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPG 256 (576)
T ss_pred CCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHHHHHhcCceEEecC
Confidence 456799999999999999999999999998654432 233567889999999999999999988888999999988865
Q ss_pred -CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 139 -KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 139 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
.+++..+++.|+++++|+++++|+++..++........ ...++|.+++||+++++++.+.+.+.+ ++++++.||+|
T Consensus 257 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~t 333 (576)
T PRK05620 257 PDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPP--ERMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMT 333 (576)
T ss_pred CCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCc--ccCceeEEEEcCCCCCHHHHHHHHHHh-CCceeeecccc
Confidence 47899999999999999999999999988765432221 235799999999999999999999988 78999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLR 291 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~g 291 (458)
|++..++.......... . .+.....++|++.+++++++++++ .+..|||+++|++++.|
T Consensus 334 E~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~G~~~~~~~~~i~~~g~~~~~~~~~~Gel~v~g~~~~~g 398 (576)
T PRK05620 334 ETSPVGTVARPPSGVSG-E--------------ARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNEGEIQVRGNWVTAS 398 (576)
T ss_pred ccccceeeeccCCcccc-c--------------cccccccccCCcCCceeEEEecCCccccCCCCCceEEEEEcCccccc
Confidence 99875543321110000 0 000011258999999999998863 24679999999999999
Q ss_pred hhcCcCCC----------------CcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCc
Q 012673 292 YWDQFLAK----------------PSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 355 (458)
Q Consensus 292 y~~~~~~~----------------~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v 355 (458)
||+++..+ ...+..++||+|||++++++||++++.||.+|+|+.+|++|+|.+||++|.+||.|
T Consensus 399 Y~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v 478 (576)
T PRK05620 399 YYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEV 478 (576)
T ss_pred ccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCc
Confidence 99998776 22344678999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCc
Q 012673 356 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTST 435 (458)
Q Consensus 356 ~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~ 435 (458)
.+++|++.+++..++.+++++++.++.... ....++|++++++ .|+.|++|+.++++ +++|+|++
T Consensus 479 ~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~-------------~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~~P~t~~ 543 (576)
T PRK05620 479 VECAVIGYPDDKWGERPLAVTVLAPGIEPT-------------RETAERLRDQLRD-RLPNWMLPEYWTFV-DEIDKTSV 543 (576)
T ss_pred eEEEEEeccCCCcCceeEEEEEecCCCCcc-------------cccHHHHHHHHHh-hCccccCCeEEEEe-ccCCCCCc
Confidence 999999999998899999999887652110 1246789999998 79999999988775 78999999
Q ss_pred ccchHHHHHHHHHH
Q 012673 436 GKIRRDEVRREVMS 449 (458)
Q Consensus 436 GKv~r~~l~~~~~~ 449 (458)
||++|+.|++++.+
T Consensus 544 GKv~r~~L~~~~~~ 557 (576)
T PRK05620 544 GKFDKKDLRQHLAD 557 (576)
T ss_pred ccCcHHHHHHHHhc
Confidence 99999999999884
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=435.39 Aligned_cols=351 Identities=26% Similarity=0.381 Sum_probs=294.8
Q ss_pred CCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEecC--CC
Q 012673 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIP--KF 140 (458)
Q Consensus 64 ~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~--~~ 140 (458)
++|+++++|||||||.||||+++|+++..+.......+++..+|++++.+|++|.+++. .++.++..|+++++.. .+
T Consensus 175 ~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~ 254 (534)
T PRK05852 175 RPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRF 254 (534)
T ss_pred CCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCc
Confidence 46889999999999999999999999988888777888899999999999999999985 5677888888877744 47
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.|+++++|+++++|.++..|.+...........+++|.++++|+++++++++.+.+.| ++++++.||+||++
T Consensus 255 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~ 333 (534)
T PRK05852 255 SAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGMTEAT 333 (534)
T ss_pred CHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccCccccc
Confidence 88999999999999999999999999987654332222356899999999999999999999998 79999999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhcC
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWDQ 295 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~~ 295 (458)
..++............ . ....+..|. .++++++++|++ .++.|||+++|+.++.|||++
T Consensus 334 ~~~~~~~~~~~~~~~~--~-------------~~~~g~~g~-~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~v~~gY~~~ 397 (534)
T PRK05852 334 HQVTTTQIEGIGQTEN--P-------------VVSTGLVGR-STGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGD 397 (534)
T ss_pred hhhhcCCccccccccC--c-------------ccccccCCC-CCCCeEEEECCCCCCCCCCCceEEEEecCcccchhcCC
Confidence 6554322110000000 0 001112344 689999999876 577899999999999999999
Q ss_pred cCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEE
Q 012673 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVAC 375 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~ 375 (458)
++.+...+ .++||+|||++++++||++++.||.+|+|+.+|.+|+|.+||+++.++|+|.+++|++++++..++.++++
T Consensus 398 ~~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~ 476 (534)
T PRK05852 398 PTITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAV 476 (534)
T ss_pred cccchhhh-cCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEE
Confidence 99888776 47899999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred EEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 376 VRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 376 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
+++.+.. ..+.+++.+++++ .|+.|++|+.++++ +++|+|++||++|++|+++|.+.
T Consensus 477 vv~~~~~----------------~~~~~~i~~~~~~-~l~~~~~P~~i~~v-~~iP~t~~GKi~r~~L~~~~~~~ 533 (534)
T PRK05852 477 IVPRESA----------------PPTAEELVQFCRE-RLAAFEIPASFQEA-SGLPHTAKGSLDRRAVAEQFGHS 533 (534)
T ss_pred EEECCCC----------------CCCHHHHHHHHHH-hcccccCCeEEEEh-hhcCCCCCccccHHHHHHHhccc
Confidence 9875541 1346789999998 69999999988775 78999999999999999988653
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=448.68 Aligned_cols=371 Identities=19% Similarity=0.281 Sum_probs=289.7
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC--
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-- 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-- 139 (458)
..++|+++|+|||||||.||||+++|+++..+.......+++..+|++++.+|++|.+|+...+.+++.|++++++++
T Consensus 177 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~ 256 (631)
T PRK07769 177 ANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAA 256 (631)
T ss_pred CCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHH
Confidence 467899999999999999999999999998887777778888999999999999999999877778888999888753
Q ss_pred C--ChHHHHHHHHHhcc---eEEeechHHHHHHHHHHHhh---ccccCCCCceEEEeCCCCCCHHHHHHHHhhCC-----
Q 012673 140 F--ESKSALEAVEQHCV---TSLITVPAIMADLATLIRVK---KTWKGRDSVKKILNGGGGLPSELMKEATNSFP----- 206 (458)
Q Consensus 140 ~--~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~~~~~---~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~----- 206 (458)
+ ++..+++.++++++ +++.++|.++..++...... .....++++|.+++||+++++++.+.+.+.|+
T Consensus 257 ~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~ 336 (631)
T PRK07769 257 FVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLP 336 (631)
T ss_pred HHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCC
Confidence 4 88999999999986 78999999887776532111 11124578999999999999999999999873
Q ss_pred CCceeeccccccCccceeeeeecCCCCC-CCC---CCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CC
Q 012673 207 KAKLISAYGMTETSSSLTFMTLYDPTLE-TPG---QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SS 276 (458)
Q Consensus 207 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~ 276 (458)
...+++.||+||++..++.......... ... ....................++|+|.++.+++++|++ .|
T Consensus 337 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~g 416 (631)
T PRK07769 337 PTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDG 416 (631)
T ss_pred hhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCC
Confidence 2469999999998764443211100000 000 0000000000000111123479999999999999853 57
Q ss_pred CccEEEEeccccchhhhcCcCCCCcccC-----------------CCceEecCceEEEeCCCcEEEEeeccceeeeCcee
Q 012673 277 HVGRILTRGAHVMLRYWDQFLAKPSVST-----------------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGEN 339 (458)
Q Consensus 277 ~~Gel~v~g~~~~~gy~~~~~~~~~~~~-----------------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~ 339 (458)
+.|||+++|++++.|||++++.+.+.|. .++||+|||+|+++ ||+++++||+||+||++|++
T Consensus 417 e~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~ 495 (631)
T PRK07769 417 QIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRN 495 (631)
T ss_pred CEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEECCee
Confidence 8999999999999999999988876653 35899999999995 89999999999999999999
Q ss_pred eCcHHHHHHHhc-CcCcce--EEEEeecC-------------------CCCcceEEEEEEeccccccccccccccchhhh
Q 012673 340 VYPEEVEAVLLQ-HPGIIG--IVVVGIAN-------------------ARLTEMVVACVRLRESWQWSESNCDQSSKNKE 397 (458)
Q Consensus 340 v~~~~iE~~l~~-~~~v~~--~~v~~~~~-------------------~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 397 (458)
|+|.|||++|.+ ||.|.+ ++|+++++ +.+++.+++++++.++..
T Consensus 496 V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~-------------- 561 (631)
T PRK07769 496 HYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAH-------------- 561 (631)
T ss_pred eCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccc--------------
Confidence 999999999996 899998 89999998 557889999999876421
Q ss_pred hhhhHHHHHHHhhhccccc-ccC-CeEEEEee-CCCCCCCcccchHHHHHHHHHH
Q 012673 398 LLLSSEVLRQHCREKNLTG-FKA-PRLFVLWR-KPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 398 ~~~~~~~l~~~~~~~~l~~-~~~-p~~~~~~~-~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
..+.++|.+++++ .++. |++ |+.++++. ++||+|++||++|+.|++.+.+
T Consensus 562 -~~~~~~l~~~~~~-~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~ 614 (631)
T PRK07769 562 -KLDPQPIADDIRA-AIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLD 614 (631)
T ss_pred -cccHHHHHHHHHH-HHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHc
Confidence 1356789999998 5875 674 87777664 3799999999999999998763
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-53 Score=435.63 Aligned_cols=353 Identities=27% Similarity=0.384 Sum_probs=295.3
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCC----CCceEEeccchhhHhhhH-HHHHHHhcCceEEe
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYG----EDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVF 136 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~----~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~ 136 (458)
..++++++++|||||||.||||+++|+++..+.... .+++. ..++.+..+|++|.+++. .++.++..|+++++
T Consensus 181 ~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~ 258 (546)
T PLN02330 181 ILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSS--LFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVV 258 (546)
T ss_pred CCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHH--hhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEE
Confidence 457899999999999999999999999987655432 23332 346788999999999874 56788999999999
Q ss_pred cCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 137 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
.+.+++..+++.++++++|++.++|+++..+++............++|.+++||+++++++++.+.+.|+++++++.||+
T Consensus 259 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~ 338 (546)
T PLN02330 259 MSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGL 338 (546)
T ss_pred ecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccc
Confidence 99999999999999999999999999999998754322222111257999999999999999999999988999999999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccch
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVML 290 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~ 290 (458)
||++.+...+........ .....++|.|+++++++++|++ .|+.|||+++|+.++.
T Consensus 339 tE~~~~~~~~~~~~~~~~------------------~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~ 400 (546)
T PLN02330 339 TEHSCITLTHGDPEKGHG------------------IAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQ 400 (546)
T ss_pred cccccceecCCCcccccc------------------ccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhh
Confidence 999754432211100000 0012358999999999999853 4778999999999999
Q ss_pred hhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcc
Q 012673 291 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 370 (458)
Q Consensus 291 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 370 (458)
||++++..+...++.++||+|||++++++||+++++||++|+|+++|++|+|.+||+++.++++|.+++|++++++..++
T Consensus 401 gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~ 480 (546)
T PLN02330 401 GYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGE 480 (546)
T ss_pred hhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCc
Confidence 99999999888888899999999999999999999999999999999999999999999999999999999999988899
Q ss_pred eEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 371 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 371 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
.+++++++.++.. .+.+++++++++ .|+.|++|+.++++ +++|+|++||++|+.|++++...
T Consensus 481 ~~~a~v~~~~~~~----------------~~~~~l~~~~~~-~l~~~~~p~~~~~v-~~iP~t~~GK~~r~~L~~~~~~~ 542 (546)
T PLN02330 481 IPAACVVINPKAK----------------ESEEDILNFVAA-NVAHYKKVRVVQFV-DSIPKSLSGKIMRRLLKEKMLSI 542 (546)
T ss_pred eeEEEEEECCCCC----------------CCHHHHHHHHHH-hcccccCceEEEEe-ccCCCCCCcceeHHHHHHHHHhh
Confidence 9999998875421 235679999998 69999999987765 78999999999999999999776
Q ss_pred hh
Q 012673 451 LK 452 (458)
Q Consensus 451 ~~ 452 (458)
.+
T Consensus 543 ~~ 544 (546)
T PLN02330 543 NK 544 (546)
T ss_pred hc
Confidence 43
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-53 Score=431.79 Aligned_cols=339 Identities=27% Similarity=0.395 Sum_probs=293.3
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~ 140 (458)
...++++++++|||||||.||+|+++|+++..........+++++++++++.+|++|.+++..++.++..|+++++.+.+
T Consensus 176 ~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~ 255 (542)
T PRK06155 176 AVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPRF 255 (542)
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeCCC
Confidence 34678999999999999999999999999987777777788899999999999999999998889999999999999989
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.|+++++|++.++|+++..|.+....... ..+++|.++.+| +++.+.+.+.+.+ ++++++.||+||++
T Consensus 256 ~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~--~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~tE~~ 330 (542)
T PRK06155 256 SASGFWPAVRRHGATVTYLLGAMVSILLSQPARESD--RAHRVRVALGPG--VPAALHAAFRERF-GVDLLDGYGSTETN 330 (542)
T ss_pred CHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcccc--ccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeecccccC
Confidence 999999999999999999999999988876433322 345788777555 6789999999988 79999999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEecc---ccchhh
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGA---HVMLRY 292 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~---~~~~gy 292 (458)
..+..... . ...+++|.+.++++++|+|++ .|+.|||+++|+ .++.||
T Consensus 331 ~~~~~~~~---~---------------------~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gei~v~~~~~~~~~~GY 386 (542)
T PRK06155 331 FVIAVTHG---S---------------------QRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGY 386 (542)
T ss_pred ccccCCCC---C---------------------CCCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCCccccchhh
Confidence 75443211 0 012258999999999999875 467899999998 689999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
++++..+...+ .++||+|||++++++||+++++||.+|+|+++|++|+|.+||+++.++|+|.+++|+++++...++.+
T Consensus 387 ~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~ 465 (542)
T PRK06155 387 FGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEV 465 (542)
T ss_pred cCCHHHHHHhh-cCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceE
Confidence 99888777665 57999999999999999999999999999999999999999999999999999999999988888889
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHH
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREV 447 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~ 447 (458)
.+++++.++. ..+.++++++|++ .++.|++|..++++ +++|+|++||++|+.|++++
T Consensus 466 ~~~v~~~~~~----------------~~~~~~~~~~~~~-~l~~~~~P~~i~~~-~~iP~t~~GKi~r~~l~~~~ 522 (542)
T PRK06155 466 MAAVVLRDGT----------------ALEPVALVRHCEP-RLAYFAVPRYVEFV-AALPKTENGKVQKFVLREQG 522 (542)
T ss_pred EEEEEECCCC----------------CCCHHHHHHHHHh-hCcCccCCcEEEEe-ccCCCCcccceeHHHHHhhc
Confidence 9888876542 2456789999998 69999999987765 78999999999999999876
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-53 Score=433.53 Aligned_cols=340 Identities=27% Similarity=0.398 Sum_probs=294.9
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~ 140 (458)
..++++++++|||||||.||+|+++|+++..........++++.+|++++.+|++|..++ ..++.++..|+++++.+.+
T Consensus 192 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~ 271 (538)
T TIGR03208 192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIW 271 (538)
T ss_pred CCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCcc
Confidence 467999999999999999999999999998888877788888999999999999999887 5678899999999998889
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.++++++|++.++|+++..+........ ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||++
T Consensus 272 ~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~ 348 (538)
T TIGR03208 272 NPARAAELIRETGVTFTMASTPFLTDLCRAVKESG--APVPSLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMTENG 348 (538)
T ss_pred CHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC--CCCCcceEEEEcCCCCCHHHHHHHHHHc-CCeEEeeeccCcCC
Confidence 99999999999999999999999999877653322 2356899999999999999999999988 78999999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhcC
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWDQ 295 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~~ 295 (458)
.+.+....... . ....++|+|++++++++++++ .|+.|||+++|+.++.||+++
T Consensus 349 ~~~~~~~~~~~--~-------------------~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~ 407 (538)
T TIGR03208 349 AVTVTEPDDAL--E-------------------KASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGCSNFGGYLKR 407 (538)
T ss_pred CccccCcccch--h-------------------hccCcccccCCCCEEEEECCCCCCCcCCCCcEEEEecCcccccccCC
Confidence 65433221100 0 012258999999999999875 577899999999999999999
Q ss_pred cCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEE
Q 012673 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVAC 375 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~ 375 (458)
+..+. .+.++||+|||+++++++|+++++||++|+|+.+|++|+|.+||++|.+||+|.+++|++++++..++.++++
T Consensus 408 ~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~ 485 (538)
T TIGR03208 408 PHLNS--TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAV 485 (538)
T ss_pred ccccc--ccCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEE
Confidence 88765 3478999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHH
Q 012673 376 VRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444 (458)
Q Consensus 376 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~ 444 (458)
+++..+. ..+.+++++++++..++.|++|+.++++ +++|+|++||++|+.|+
T Consensus 486 v~~~~~~----------------~~~~~~l~~~~~~~~l~~~~~P~~i~~v-~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 486 VVPKPGC----------------TLDFAAMVAFLKAQKVALQYIPERLEVV-DALPATPAGKIQKFRLR 537 (538)
T ss_pred EEECCCC----------------CCCHHHHHHHHHhcchhhccCCcEEEEe-ccCCCCCccccchHhhc
Confidence 9987541 2456788899985469999999987775 78999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=435.16 Aligned_cols=354 Identities=25% Similarity=0.426 Sum_probs=282.2
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC--
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP-- 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~-- 138 (458)
...++++++++|||||||.||+|+++|+++..+.......+++.++|+.++.+|++|.+++ ..|+++++.+
T Consensus 170 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~-------~~g~~~~~~~~~ 242 (552)
T PRK09274 170 DLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGP-------ALGMTSVIPDMD 242 (552)
T ss_pred CCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhh-------hhCCeEEecCcc
Confidence 3467899999999999999999999999999888888888899999999999999886543 4577777653
Q ss_pred -----CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCC-CCceee
Q 012673 139 -----KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP-KAKLIS 212 (458)
Q Consensus 139 -----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~~i~~ 212 (458)
.+++..+++.|+++++|+++++|+++..|.+....... .++++|.+++||+++++++.+.+.+.|+ ++++++
T Consensus 243 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~ 320 (552)
T PRK09274 243 PTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGI--KLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILT 320 (552)
T ss_pred cccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCC--CCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEc
Confidence 36789999999999999999999999999887544332 4578999999999999999999999996 479999
Q ss_pred ccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC--------------CCCc
Q 012673 213 AYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--------------SSHV 278 (458)
Q Consensus 213 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~--------------~~~~ 278 (458)
.||+||++.+++........... .........++|+|+++++++|+|+. .|+.
T Consensus 321 ~YG~TE~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~ 387 (552)
T PRK09274 321 PYGATEALPISSIESREILFATR-------------AATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI 387 (552)
T ss_pred cccccccceeEeecchhhhcccc-------------ccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCe
Confidence 99999998654322111000000 00000112368999999999999841 4678
Q ss_pred cEEEEeccccchhhhcCcCCCCccc--CCCc--eEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcC
Q 012673 279 GRILTRGAHVMLRYWDQFLAKPSVS--TGEV--WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 354 (458)
Q Consensus 279 Gel~v~g~~~~~gy~~~~~~~~~~~--~~~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 354 (458)
|||+++|++++.|||+++..+...+ +.++ ||+|||+|++++||+++++||.+|+|+++|++|+|.+||++|.+||+
T Consensus 388 Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~ 467 (552)
T PRK09274 388 GEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPG 467 (552)
T ss_pred eEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcc
Confidence 9999999999999999998877654 3455 99999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCC-
Q 012673 355 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLT- 433 (458)
Q Consensus 355 v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t- 433 (458)
|.+++|++++++ .++.++++|++.++..... ....+++++++.. ...++.|+.++++ ++||+|
T Consensus 468 V~~~~v~~~~~~-~~~~~~~~v~~~~~~~~~~------------~~l~~~l~~~l~~--~~~~~~~~~~~~~-~~lP~t~ 531 (552)
T PRK09274 468 VKRSALVGVGVP-GAQRPVLCVELEPGVACSK------------SALYQELRALAAA--HPHTAGIERFLIH-PSFPVDI 531 (552)
T ss_pred cceeEEEEeCCC-CCceEEEEEEccCccccch------------HHHhhhhHHHHHh--cCCCcceeEEecc-CCCCccc
Confidence 999999999875 4678889998876521000 0012344444443 3556778877765 789999
Q ss_pred -CcccchHHHHHHHHHHHhh
Q 012673 434 -STGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 434 -~~GKv~r~~l~~~~~~~~~ 452 (458)
++||++|+.|++.+.+.+.
T Consensus 532 ~~~GKi~r~~L~~~~~~~~~ 551 (552)
T PRK09274 532 RHNAKIFREKLAVWAAKQLK 551 (552)
T ss_pred cccccccHHHHHHHHHHhhc
Confidence 7999999999999887764
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-54 Score=481.14 Aligned_cols=371 Identities=19% Similarity=0.193 Sum_probs=298.6
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC--
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-- 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-- 139 (458)
..++|++||+|||||||.||||+++|+++.+...+....+++.++|++++..|++|..++..++.+++.|+++++.+.
T Consensus 412 ~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~ 491 (1389)
T TIGR03443 412 VGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADD 491 (1389)
T ss_pred CCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhh
Confidence 467899999999999999999999999999888888888899999999999999999999999999999999998764
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.++..+++.|+++++|+++++|+++..|.... ....+++|.+++||+++++...+.+.+.++++++++.||+||
T Consensus 492 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~-----~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 566 (1389)
T TIGR03443 492 IGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA-----TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTE 566 (1389)
T ss_pred ccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc-----cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCc
Confidence 36788999999999999999999998886432 123568999999999999999999998888899999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-------CCCccEEEEeccccchh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-------SSHVGRILTRGAHVMLR 291 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-------~~~~Gel~v~g~~~~~g 291 (458)
++..++.............. .......++|+|++++++.|+|++ .|+.|||+|+|++++.|
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~G 634 (1389)
T TIGR03443 567 TQRAVSYFEIPSRSSDSTFL------------KNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEG 634 (1389)
T ss_pred cceeEEEEEccccccccchh------------hcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchh
Confidence 98765543321111000000 000012358999999999999854 47889999999999999
Q ss_pred hhcCcCCCCcccC----------------------------CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcH
Q 012673 292 YWDQFLAKPSVST----------------------------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPE 343 (458)
Q Consensus 292 y~~~~~~~~~~~~----------------------------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~ 343 (458)
|+++++.|.+.|. .++||+|||+|++++||+++++||+||+||++|++|+|.
T Consensus 635 Y~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~ 714 (1389)
T TIGR03443 635 YLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELG 714 (1389)
T ss_pred cCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHH
Confidence 9999988877652 368999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecccccccccc---c----ccc---chhhhhhhhHHHHHHHhhhcc
Q 012673 344 EVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESN---C----DQS---SKNKELLLSSEVLRQHCREKN 413 (458)
Q Consensus 344 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~---~----~~~---~~~~~~~~~~~~l~~~~~~~~ 413 (458)
|||.+|.+||.|.+++|++.++...++.+++++++.......... . ... ..........+++++++++ .
T Consensus 715 eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~ 793 (1389)
T TIGR03443 715 EIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKK-K 793 (1389)
T ss_pred HHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHh-h
Confidence 999999999999999999988877788899999976321100000 0 000 0000011235678999988 6
Q ss_pred cccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHh
Q 012673 414 LTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451 (458)
Q Consensus 414 l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 451 (458)
|+.||+|..++++ ++||+|++||++|+.|++.+...+
T Consensus 794 Lp~y~~P~~~~~~-~~lP~t~~GKidr~~L~~~~~~~~ 830 (1389)
T TIGR03443 794 LPSYAIPTVIVPL-KKLPLNPNGKVDKPALPFPDTAQL 830 (1389)
T ss_pred CCcccCCceEEEc-ccCCCCCCccccHhhcCCCchhhh
Confidence 9999999988765 789999999999999975544433
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-53 Score=430.55 Aligned_cols=349 Identities=30% Similarity=0.500 Sum_probs=299.9
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcC-CCCceEEeccchhhHhhhHHHHHHHhcCceEEecC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGY-GEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP- 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~- 138 (458)
....+++++++|||||||.||+|+++|+++..+.......+++ ..++++++..|++|.+|+..++.++..|+++++.+
T Consensus 170 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 249 (542)
T PRK07786 170 DIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPL 249 (542)
T ss_pred CCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccC
Confidence 3456789999999999999999999999998877776677776 67889999999999999988899999999999865
Q ss_pred -CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 139 -KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 139 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
.+++..+++.|+++++|+++++|+++..++....... ...++|.+++||+++++++++.+.+.|+++++++.||+|
T Consensus 250 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~---~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~t 326 (542)
T PRK07786 250 GAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP---RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQT 326 (542)
T ss_pred CCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc---cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeeccc
Confidence 5789999999999999999999999999987643222 124799999999999999999999999889999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++.+.+.+..... . ....++|.|++++.++++|++ .++.|||+++|+.++.||
T Consensus 327 E~~~~~~~~~~~~~-~--------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy 385 (542)
T PRK07786 327 EMSPVTCMLLGEDA-I--------------------RKLGSVGKVIPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGY 385 (542)
T ss_pred ccccceEecCcccc-c--------------------ccCCCccccCCCceEEEECCCCCCCcCCCceEEEEEChhhhhhh
Confidence 99865443221110 0 012258999999999999875 577899999999999999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
++++..+...+ .++||+|||+++++++|+++++||.+|+|+++|++|+|.+||++|.++|.|.+++|++.+++..++.+
T Consensus 386 ~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~ 464 (542)
T PRK07786 386 WNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVP 464 (542)
T ss_pred cCCHHHHHHHh-hCCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceE
Confidence 99988877666 46899999999999999999999999999999999999999999999999999999999888888889
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHh
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 451 (458)
++++++.+... ....+++++++++ .+++|++|..++++ ++||+|++||++|+.|++.+.+..
T Consensus 465 ~~~v~~~~~~~---------------~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~iP~t~~GKv~r~~L~~~~~~~~ 526 (542)
T PRK07786 465 VAVAAVRNDDA---------------ALTLEDLAEFLTD-RLARYKHPKALEIV-DALPRNPAGKVLKTELRERYGACV 526 (542)
T ss_pred EEEEEECCCCC---------------CCCHHHHHHHHHh-hccCCCCCCEEEEe-ccCCCCCcccccHHHHHHHHHhhh
Confidence 99998765310 1345788999988 69999999988775 789999999999999999998654
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=442.09 Aligned_cols=362 Identities=20% Similarity=0.219 Sum_probs=286.9
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCC--CCceEEeccchhhHhhh-HHHHHHHhcCceEEecC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYG--EDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIP 138 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~--~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~ 138 (458)
..++|+++|+|||||||.||||++||+++..+.......+++. .++++++.+|++|.+|+ ..++.++..|+++++.+
T Consensus 206 ~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~ 285 (614)
T PRK08180 206 VGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDD 285 (614)
T ss_pred CCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeC
Confidence 4679999999999999999999999999988777766666653 56899999999999987 56678899999998876
Q ss_pred C-CCh---HHHHHHHHHhcceEEeechHHHHHHHHHHHhhcc--ccCCCCceEEEeCCCCCCHHHHHHHHhh----CC-C
Q 012673 139 K-FES---KSALEAVEQHCVTSLITVPAIMADLATLIRVKKT--WKGRDSVKKILNGGGGLPSELMKEATNS----FP-K 207 (458)
Q Consensus 139 ~-~~~---~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~-~ 207 (458)
. +++ ..+++.++++++|+++++|.++..|++....... ...++++|.+++||+++++++.+.+.+. ++ +
T Consensus 286 ~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~ 365 (614)
T PRK08180 286 GKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGER 365 (614)
T ss_pred CCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCC
Confidence 3 444 4678899999999999999999999876543211 1124689999999999999999998874 32 3
Q ss_pred CceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEeccc
Q 012673 208 AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAH 287 (458)
Q Consensus 208 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~~ 287 (458)
+++++.||+||++..++...... ...+++|+|+++++++++++ +..|||+++|++
T Consensus 366 ~~l~~~YG~TE~~~~~~~~~~~~-----------------------~~~~svG~p~pg~~v~i~d~--~~~GEi~vrg~~ 420 (614)
T PRK08180 366 IRMMTGLGMTETAPSATFTTGPL-----------------------SRAGNIGLPAPGCEVKLVPV--GGKLEVRVKGPN 420 (614)
T ss_pred ceeeeeecccccCCceEeccccc-----------------------CCCCcccCccCCcEEEEecC--CCCcEEEEecCc
Confidence 78999999999986554322110 01236999999999999875 456999999999
Q ss_pred cchhhhcCcCCCCcccCCCceEecCceEEE----eCCCcEEEEeeccceee-eCceeeC--cHHHHHHHhcCcCcceEEE
Q 012673 288 VMLRYWDQFLAKPSVSTGEVWLDTGDIGSI----DDGGNVWLVGRRNGRIK-SGGENVY--PEEVEAVLLQHPGIIGIVV 360 (458)
Q Consensus 288 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~----~~~g~l~~~GR~~d~i~-~~G~~v~--~~~iE~~l~~~~~v~~~~v 360 (458)
++.|||++++.+...++.+|||+|||+|++ +++|+++++||++|+|+ .+|++|+ |.|+|.++.+||.|.+++|
T Consensus 421 v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V 500 (614)
T PRK08180 421 VTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVI 500 (614)
T ss_pred cchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEE
Confidence 999999999999888888999999999999 46899999999999888 6898766 7788899999999999999
Q ss_pred EeecCCCCcceEEEEEEeccccc--cccccccccchhhhhhhhHHHHHHHhhhccccccc--------CCeEEEEeeCCC
Q 012673 361 VGIANARLTEMVVACVRLRESWQ--WSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK--------APRLFVLWRKPF 430 (458)
Q Consensus 361 ~~~~~~~~~~~~~a~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~--------~p~~~~~~~~~l 430 (458)
++.+++ .+.|+|+++++.. +.... ......+..+.++|++++++ .|..|+ +|++++++ +++
T Consensus 501 ~g~~~~----~~~a~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~p~~~~~~-~~~ 571 (614)
T PRK08180 501 TGHDRD----EIGLLVFPNLDACRRLAGLL---ADASLAEVLAHPAVRAAFRE-RLARLNAQATGSSTRVARALLL-DEP 571 (614)
T ss_pred EcCCCC----ceEEEEEcCHHHHHHHHhhc---ccCCHHHHhcCHHHHHHHHH-HHHHHHhhccccHhheeEEEEe-cCC
Confidence 998765 3678888876521 00000 00000112345667777776 477776 89998876 668
Q ss_pred CCC------CcccchHHHHHHHHHHHhhcCCCC
Q 012673 431 PLT------STGKIRRDEVRREVMSHLKSLPSN 457 (458)
Q Consensus 431 P~t------~~GKv~r~~l~~~~~~~~~~~~~~ 457 (458)
|+| ++||++|+.+.+.|+++|++||++
T Consensus 572 p~~~~gk~t~~~~~~R~~~~~~y~~~i~~lY~~ 604 (614)
T PRK08180 572 PSLDAGEITDKGYINQRAVLARRAALVEALYAD 604 (614)
T ss_pred CCCccCccCccccccHHHHHHHhHHHHHHHhCC
Confidence 755 567999999999999999999985
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-53 Score=429.98 Aligned_cols=350 Identities=29% Similarity=0.502 Sum_probs=305.2
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~ 139 (458)
...++++++++|||||||.||+|.++|.++..+.......++++++|++++.+|++|.+++. .++.++..|+++++.+.
T Consensus 167 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~ 246 (523)
T PRK08316 167 ELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDA 246 (523)
T ss_pred CCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecC
Confidence 45678999999999999999999999999988888778888999999999999999999884 45567899999999988
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
.++..+++.++++++|++.++|.++..+.+...... ..++++|.+++||++++.++.+.+++.|+++++++.||+||+
T Consensus 247 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~ 324 (523)
T PRK08316 247 PDPELILRTIEAERITSFFAPPTVWISLLRHPDFDT--RDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEI 324 (523)
T ss_pred CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccccc--CCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeeccccc
Confidence 899999999999999999999999998887643322 245789999999999999999999999988999999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhc
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWD 294 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~ 294 (458)
+.+++........ ....++|+|+++++++++|++ .++.|||+++|+.++.||++
T Consensus 325 ~~~~~~~~~~~~~---------------------~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gei~v~~~~~~~~y~~ 383 (523)
T PRK08316 325 APLATVLGPEEHL---------------------RRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRSPQLMLGYWD 383 (523)
T ss_pred CccccccCccccc---------------------cccCCcccCCCCcEEEEEcCCCCCCCCCCcceEEEECCchhhhhcC
Confidence 8765443221100 012368999999999999865 57889999999999999999
Q ss_pred CcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEE
Q 012673 295 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVA 374 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a 374 (458)
++..+...+ .++||+|||+|++++||+++++||++|+|+++|++|+|.+||+.+.++++|.+++|++++++..++.+++
T Consensus 384 ~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~ 462 (523)
T PRK08316 384 DPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTA 462 (523)
T ss_pred CHHHHHHHh-hCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEE
Confidence 988777665 5799999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 375 CVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 375 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
+++++++. ....+++.+++++ .++.|++|..++++ +++|+|++||++|++|++.|.+.++
T Consensus 463 ~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~~p~t~~gKi~r~~l~~~~~~~~~ 522 (523)
T PRK08316 463 VVVPKAGA----------------TVTEDELIAHCRA-RLAGFKVPKRVIFV-DELPRNPSGKILKRELRERYAGAFT 522 (523)
T ss_pred EEEECCCC----------------CCCHHHHHHHHHH-hcccCCCCcEEEEe-cCCCCCCccceeHHHHHHHHHhhcc
Confidence 99987642 1345778899988 69999999998875 7899999999999999999988765
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=424.43 Aligned_cols=342 Identities=31% Similarity=0.521 Sum_probs=295.9
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~ 140 (458)
...++++++++|||||||.||+|+++|+++..........++++++|++++.+|++|++++..++.++..|+++++.+.+
T Consensus 137 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~ 216 (483)
T PRK03640 137 EFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKF 216 (483)
T ss_pred CCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCCC
Confidence 45678999999999999999999999999887777666778899999999999999999998888999999999999999
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.++++++|++.++|+++..|.+...... ...++|.+++||+++++.+.+.+++. ++++++.||+||++
T Consensus 217 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~---~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~ 291 (483)
T PRK03640 217 DAEKINKLLQTGGVTIISVVSTMLQRLLERLGEGT---YPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETA 291 (483)
T ss_pred CHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCccc---cCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCccc
Confidence 99999999999999999999999999986543321 23589999999999999999988874 79999999999987
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC----CCCccEEEEeccccchhhhcCc
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SSHVGRILTRGAHVMLRYWDQF 296 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~----~~~~Gel~v~g~~~~~gy~~~~ 296 (458)
..++........ ...+++|+|++++++++.+++ .++.|||+++|+.++.||++++
T Consensus 292 ~~~~~~~~~~~~---------------------~~~~~vG~p~~~~~~~i~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~ 350 (483)
T PRK03640 292 SQIVTLSPEDAL---------------------TKLGSAGKPLFPCELKIEKDGVVVPPFEEGEIVVKGPNVTKGYLNRE 350 (483)
T ss_pred ccccccCccccc---------------------ccCCCcccccCCcEEEEecCCCcCCCCCceEEEEECcchhhhhcCCH
Confidence 543322111000 012359999999999998863 5678999999999999999998
Q ss_pred CCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEE
Q 012673 297 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACV 376 (458)
Q Consensus 297 ~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v 376 (458)
..+...+ .++||+|||++++++||++++.||++|++|.+|.+|+|.+||+++.++++|.++++++.+++..++.+++++
T Consensus 351 ~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~ 429 (483)
T PRK03640 351 DATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFV 429 (483)
T ss_pred HHHHHHH-hcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEE
Confidence 7776665 578999999999999999999999999999999999999999999999999999999998887788888888
Q ss_pred EeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 377 RLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
++... .+.+++++++++ .|++|++|+.++++ +++|+|++||++|+.|++.+++
T Consensus 430 ~~~~~------------------~~~~~l~~~~~~-~l~~~~~p~~i~~~-~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 430 VKSGE------------------VTEEELRHFCEE-KLAKYKVPKRFYFV-EELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred EeCCC------------------CCHHHHHHHHHH-hccCCCCCcEEEEe-CCCCCCCccceeHHHHHHHHhh
Confidence 75433 456789999998 69999999987775 7899999999999999999874
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-53 Score=427.83 Aligned_cols=346 Identities=30% Similarity=0.510 Sum_probs=298.2
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 139 (458)
...++++++++|||||||.||+|+++|+++..........+++..+++++..+|++|.+++ ...+.+++.|+++++.+.
T Consensus 145 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~ 224 (497)
T PRK06145 145 AVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHRE 224 (497)
T ss_pred CCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCc
Confidence 3467899999999999999999999999997666666667788999999999999999888 445778899999999998
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.++++++|.+.++|+++..++........ ..+++|.+++||+++++++++.+.+.|+++++++.||+||+
T Consensus 225 ~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~--~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~ 302 (497)
T PRK06145 225 FDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRF--DLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTET 302 (497)
T ss_pred CCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcccc--ccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCccc
Confidence 9999999999999999999999999999876433222 34689999999999999999999999988999999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhc
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWD 294 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~ 294 (458)
+...+...... .. ...+++|.|+++++++++|++ .++.|||+++|++++.||++
T Consensus 303 ~~~~~~~~~~~-~~--------------------~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~Gy~~ 361 (497)
T PRK06145 303 CSGDTLMEAGR-EI--------------------EKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWK 361 (497)
T ss_pred CCcceeccCcc-cc--------------------ccCCCcccCCCCceEEEECCCCCCCCCCCceEEEEECcchhhhhcC
Confidence 87543221100 00 012258999999999999875 47789999999999999999
Q ss_pred CcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEE
Q 012673 295 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVA 374 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a 374 (458)
++..+...+ .++||+|||+++++++|+++++||++|+||++|++++|.+||++|.++|+|.+++|++.+++..++.+++
T Consensus 362 ~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~ 440 (497)
T PRK06145 362 DPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITA 440 (497)
T ss_pred ChHHHHHHH-hCCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEE
Confidence 988877666 4789999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHH
Q 012673 375 CVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448 (458)
Q Consensus 375 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~ 448 (458)
++++.+.. ..+.+++.+++++ .|++|++|+.++++ +++|+|++||++|+.|++++.
T Consensus 441 ~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 441 VVVLNPGA----------------TLTLEALDRHCRQ-RLASFKVPRQLKVR-DELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred EEEECCCC----------------CCCHHHHHHHHHH-hhhcCCCCCEEEEe-ccCCCCCcccccHHHHHHHhc
Confidence 99886541 1346789999998 69999999987765 789999999999999998764
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-53 Score=433.02 Aligned_cols=351 Identities=32% Similarity=0.533 Sum_probs=302.4
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecC-C
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIP-K 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~-~ 139 (458)
..++++++++|||||||.||+|.++|+++..+.......+++..+|++++.+|++|.+|. ..++.++..|+++++.. .
T Consensus 198 ~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~ 277 (558)
T PRK12583 198 LDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEA 277 (558)
T ss_pred cCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCC
Confidence 457899999999999999999999999998888877788899999999999999999987 56778888999888643 5
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.++++++|+++++|+++..++....... ...+++|.+++||+++++++.+.+.+.+++..+++.||+||+
T Consensus 278 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~--~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~ 355 (558)
T PRK12583 278 FDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGN--FDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTET 355 (558)
T ss_pred CCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccC--CCchhheEEEecCCCCCHHHHHHHHHHcCCcceecccccccc
Confidence 789999999999999999999999988776543222 235789999999999999999999999866789999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhc
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWD 294 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~ 294 (458)
+.+++.+....... ....++|.|++++.++++|++ .|+.|||+++|+.++.||++
T Consensus 356 ~~~~~~~~~~~~~~--------------------~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~ 415 (558)
T PRK12583 356 SPVSLQTTAADDLE--------------------RRVETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWN 415 (558)
T ss_pred ccceeccCcccccc--------------------cccCCCCccCCCCeEEEECCCCCCCCCCCeeEEEEEeCccchhhcC
Confidence 87654432111100 012358999999999999876 56789999999999999999
Q ss_pred CcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEE
Q 012673 295 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVA 374 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a 374 (458)
++..+...+..++||+|||+++++++|++++.||++|+|+++|.+|+|.+||++|.++++|.+++|+++++...++.+++
T Consensus 416 ~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~ 495 (558)
T PRK12583 416 NPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVA 495 (558)
T ss_pred ChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEE
Confidence 98888777767899999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred EEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 375 CVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 375 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
++++.++. ..+.+++++++++ .|+.|++|..++++ +++|+|++||++|+.|+++..++++
T Consensus 496 ~v~~~~~~----------------~~~~~~i~~~~~~-~L~~~~~P~~i~~v-~~lP~t~sGK~~r~~L~~~~~~~~~ 555 (558)
T PRK12583 496 WVRLHPGH----------------AASEEELREFCKA-RIAHFKVPRYFRFV-DEFPMTVTGKVQKFRMREISIEELA 555 (558)
T ss_pred EEEECCCC----------------CCCHHHHHHHHHh-hcccCcCCcEEEEe-ccCCCCCCCCccHHHHHHHHHhhcC
Confidence 99876541 1346789999998 79999999987775 7899999999999999999877654
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-52 Score=430.19 Aligned_cols=351 Identities=31% Similarity=0.505 Sum_probs=303.1
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEe-cCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVF-IPK 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~-~~~ 139 (458)
..++++++++|||||||.||+|.++|+++..+.......+++.++|+++..+|++|..++ ..++.++..|+++++ ...
T Consensus 196 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~ 275 (559)
T PRK08315 196 LDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEG 275 (559)
T ss_pred CCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCC
Confidence 457899999999999999999999999998888888888899999999999999999887 567889999999884 446
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.++++++|+++++|+++..++........ ..+++|.+++||+++++++++.+.+.++..++++.||+||+
T Consensus 276 ~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~--~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~ 353 (559)
T PRK08315 276 FDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARF--DLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTET 353 (559)
T ss_pred CCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCC--CchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEccccc
Confidence 8999999999999999999999999888765433322 35789999999999999999999999866679999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhhh
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy~ 293 (458)
+.+++.+........ ...++|.|+++++++++|++ .|+.|||+++|+.++.|||
T Consensus 354 ~~~~~~~~~~~~~~~--------------------~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~ 413 (559)
T PRK08315 354 SPVSTQTRTDDPLEK--------------------RVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYW 413 (559)
T ss_pred ccceeecCcccchhh--------------------ccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhhc
Confidence 875543322111100 12358999999999999876 5788999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
+++..+...+..++||+|||+++++++|+++++||.+|+|+++|++|+|.+||++|.++++|.+++|++++++..++.++
T Consensus 414 ~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 493 (559)
T PRK08315 414 NDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVC 493 (559)
T ss_pred CChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEE
Confidence 99988877777789999999999999999999999999999999999999999999999999999999999887788899
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
+++++.++. ..+.+++++++++ .++.|++|..++++ ++||+|++||++|..|++++....+
T Consensus 494 ~~v~~~~~~----------------~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t~~GK~~r~~L~~~~~~~~~ 554 (559)
T PRK08315 494 AWIILRPGA----------------TLTEEDVRDFCRG-KIAHYKIPRYIRFV-DEFPMTVTGKIQKFKMREMMIEELG 554 (559)
T ss_pred EEEEeCCCC----------------CCCHHHHHHHHHh-hcccccCCcEEEEc-ccCCCCCCCceeHHHHHHHHHhhhc
Confidence 999876541 1346789999988 79999999987775 7899999999999999999877654
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=428.59 Aligned_cols=354 Identities=27% Similarity=0.441 Sum_probs=292.4
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhh--cCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV--GYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 138 (458)
...++++++++|||||||.||+|+++|+++..........+ ++..+|+.+.++|++|.+++..++ .++.|+++++.+
T Consensus 159 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~g~~~~~~~ 237 (528)
T PRK07470 159 AVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QVARGAATVLLP 237 (528)
T ss_pred cCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HHhcCceEEEec
Confidence 45678999999999999999999999999865443322222 567889999999999999986554 567788777665
Q ss_pred --CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 139 --KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 139 --~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
.+++..+++.|+++++|++.++|+++..+.+...... ...+++|.+++||+++++.+.+.+.+.+ +.++++.||+
T Consensus 238 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~ 314 (528)
T PRK07470 238 SERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDR--YDHSSLRYVIYAGAPMYRADQKRALAKL-GKVLVQYFGL 314 (528)
T ss_pred ccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCC--CCCcceEEEEEcCCCCCHHHHHHHHHHh-CcHHHHhCCC
Confidence 4789999999999999999999999999987643322 2356899999999999999999998888 6889999999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchh
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLR 291 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~g 291 (458)
||++..++............ .....+++|.|+++++++++|++ .++.|||+++|+.++.|
T Consensus 315 TE~~~~~~~~~~~~~~~~~~---------------~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~g 379 (528)
T PRK07470 315 GEVTGNITVLPPALHDAEDG---------------PDARIGTCGFERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAG 379 (528)
T ss_pred cccCCceeecchhhcccccc---------------ccceeeccCcccCCcEEEEECCCCCCCCCCCceEEEEeCCccchh
Confidence 99986554332110000000 00122368999999999999875 57789999999999999
Q ss_pred hhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcce
Q 012673 292 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEM 371 (458)
Q Consensus 292 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 371 (458)
|++++..+...+ .++||+|||+++++++|++++.||.||+|+++|++|+|.+||++|.+++.|.+++|++.+++..++.
T Consensus 380 y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~ 458 (528)
T PRK07470 380 YYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEV 458 (528)
T ss_pred hcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCce
Confidence 999988776655 4789999999999999999999999999999999999999999999999999999999999888888
Q ss_pred EEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHh
Q 012673 372 VVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451 (458)
Q Consensus 372 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 451 (458)
+++++++.++. ..+.+++++++++ .|++|++|..++++ ++||+|++||++|+.|++++++.-
T Consensus 459 ~~~~~~~~~~~----------------~~~~~~~~~~l~~-~l~~~~~P~~~~~~-~~iP~t~~GKi~r~~l~~~~~~~~ 520 (528)
T PRK07470 459 GVAVCVARDGA----------------PVDEAELLAWLDG-KVARYKLPKRFFFW-DALPKSGYGKITKKMVREELEERG 520 (528)
T ss_pred eEEEEEECCCC----------------CCCHHHHHHHHHH-hhhcCCCCcEEEEe-ccCCCCCcccccHHHHHHHHHhcc
Confidence 88888876541 1346789999998 69999999988775 789999999999999999988765
Q ss_pred h
Q 012673 452 K 452 (458)
Q Consensus 452 ~ 452 (458)
.
T Consensus 521 ~ 521 (528)
T PRK07470 521 L 521 (528)
T ss_pred c
Confidence 4
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=422.19 Aligned_cols=347 Identities=29% Similarity=0.475 Sum_probs=293.2
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEecCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~~ 140 (458)
..++++++++|||||||.||+|+++|+++...............+|++++.+|++|++++. .++.++..|+++++.+.+
T Consensus 132 ~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~ 211 (488)
T PRK09088 132 IPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGF 211 (488)
T ss_pred CCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 4568999999999999999999999999987766666666788999999999999999985 466788899999988888
Q ss_pred ChHHHHHHHH--HhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 141 ESKSALEAVE--QHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 141 ~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
++...+..+. ++++|+++++|.++..+........ ..++++|.+++||++++.+..+.+.+. ++++++.||+||
T Consensus 212 ~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE 287 (488)
T PRK09088 212 EPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDA--AALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSE 287 (488)
T ss_pred CHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCc--cccccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccc
Confidence 9999998886 4789999999999988875432111 234689999999999999988887764 789999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~ 293 (458)
++............ ....+++|.|+++++++++|++ .++.|||+++|++++.||+
T Consensus 288 ~~~~~~~~~~~~~~--------------------~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gY~ 347 (488)
T PRK09088 288 AGTVFGMSVDCDVI--------------------RAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYW 347 (488)
T ss_pred cccccccCCCcccc--------------------cccCCccccCCCCcEEEEECCCCCCCcCCCceEEEEECCccchhhc
Confidence 98643211100000 0022368999999999999865 4678999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
+++..+...+..++||+|||+++++++|++++.||.+|+|+.+|++|+|.+||++|.++|.|.+++|++++++..++..+
T Consensus 348 ~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 427 (488)
T PRK09088 348 RRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGY 427 (488)
T ss_pred CChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeE
Confidence 99998888787889999999999999999999999999999999999999999999999999999999999887788888
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
++++++++. ..+.+++++++++ .+++|++|+.++++ ++||+|++||++|+.|++++.+.
T Consensus 428 ~~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~~i~~~-~~iP~t~~gKi~r~~l~~~~~~~ 486 (488)
T PRK09088 428 LAIVPADGA----------------PLDLERIRSHLST-RLAKYKVPKHLRLV-DALPRTASGKLQKARLRDALAAG 486 (488)
T ss_pred EEEEECCCC----------------CCCHHHHHHHHHh-hCcCCCCCCEEEEc-ccCCCCCCCceeHHHHHHHHHhc
Confidence 998876541 1346789999998 69999999987765 78999999999999999988764
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=425.35 Aligned_cols=340 Identities=30% Similarity=0.443 Sum_probs=287.4
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 139 (458)
...++++++++|||||||.||+|+++|+++............+..++++++.+|++|..+. ..++.++..|+++++.++
T Consensus 169 ~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~ 248 (517)
T PRK08008 169 PLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEK 248 (517)
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccc
Confidence 3457899999999999999999999999997654434444457889999999999998665 567788999999999999
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.|+++++|++.++|.+++.++........ ....++.++++ ++++++....+.+.+ ++++++.||+||+
T Consensus 249 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~YG~tE~ 324 (517)
T PRK08008 249 YSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAND--RQHCLREVMFY-LNLSDQEKDAFEERF-GVRLLTSYGMTET 324 (517)
T ss_pred cCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcccc--ccccceeeEEe-cCCCHHHHHHHHHHh-CCeEEeecccccc
Confidence 9999999999999999999999999888765322221 23467777765 578999999999888 7999999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEec---cccchh
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRG---AHVMLR 291 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g---~~~~~g 291 (458)
+..++....... ....++|.|+++++++++|++ .|+.|||+++| ++++.|
T Consensus 325 ~~~~~~~~~~~~----------------------~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~~~g 382 (517)
T PRK08008 325 IVGIIGDRPGDK----------------------RRWPSIGRPGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKE 382 (517)
T ss_pred ccccccCCcccc----------------------ccCCccccCCCCcEEEEECCCCCCCCCCCcceEEEeCCCCcchhhh
Confidence 754432211110 012269999999999999876 56789999998 689999
Q ss_pred hhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcce
Q 012673 292 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEM 371 (458)
Q Consensus 292 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 371 (458)
||++++.+.+.+..++||+|||+++++++|+++++||++|+||.+|++|+|.+||.++.+|+.|.+++|++++++..++.
T Consensus 383 y~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~ 462 (517)
T PRK08008 383 YYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEA 462 (517)
T ss_pred HhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCce
Confidence 99999999888888999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred EEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHH
Q 012673 372 VVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444 (458)
Q Consensus 372 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~ 444 (458)
++++++++.+. ..+.+++++++++ .+++|++|..++++ +++|+|++||++|+.|+
T Consensus 463 ~~~~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~P~~~~~v-~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 463 IKAFVVLNEGE----------------TLSEEEFFAFCEQ-NMAKFKVPSYLEIR-KDLPRNCSGKIIKKNLK 517 (517)
T ss_pred EEEEEEECCCC----------------CCCHHHHHHHHHh-hcccccCCcEEEEe-ccCCCCCccceehhhcC
Confidence 99999987642 1346789999998 69999999987775 78999999999999874
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=430.18 Aligned_cols=347 Identities=31% Similarity=0.487 Sum_probs=297.0
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhc-C-CCCceEEeccchhhHhhh-HHHHHHHhcCceEEecC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG-Y-GEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIP 138 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~-~-~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~ 138 (458)
..++++++++|||||||.||+|+++|+++..+.......+. + ..++++++.+|++|.+|+ ..++.++..|+++++.+
T Consensus 216 ~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 295 (573)
T PRK05605 216 PTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLP 295 (573)
T ss_pred CCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeC
Confidence 46789999999999999999999999999876654433332 2 347899999999999987 45667889999999988
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..+++.|+++++|++.++|+++..|.+....... ..+++|.+++||+++++++.+.+.+.+ ++++++.||+||
T Consensus 296 ~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~i~~gg~~l~~~~~~~~~~~~-~~~i~~~YG~TE 372 (573)
T PRK05605 296 APDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGV--DLSGVRNAFSGAMALPVSTVELWEKLT-GGLLVEGYGLTE 372 (573)
T ss_pred CCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCC--CchhccEEEECCCcCCHHHHHHHHHHh-CCCeecccccch
Confidence 89999999999999999999999999999876544332 357899999999999999999999888 789999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-------CCCccEEEEeccccchh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-------SSHVGRILTRGAHVMLR 291 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-------~~~~Gel~v~g~~~~~g 291 (458)
++.+++....... ...+++|.|++++.++++|++ .++.|||+++|+.++.|
T Consensus 373 ~~~~~~~~~~~~~----------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~g 430 (573)
T PRK05605 373 TSPIIVGNPMSDD----------------------RRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKG 430 (573)
T ss_pred hchhhhcCCcccC----------------------CcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhh
Confidence 9875543221100 012368999999999999864 36789999999999999
Q ss_pred hhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcce
Q 012673 292 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEM 371 (458)
Q Consensus 292 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 371 (458)
|++++..+...+. ++||+|||+++++++|++++.||++|+|+.+|++|+|.+||+++.+++.|.++++++.++...++.
T Consensus 431 y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~ 509 (573)
T PRK05605 431 YWNRPEETAKSFL-DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEE 509 (573)
T ss_pred hcCChhHhhhccc-CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeE
Confidence 9999888877664 569999999999999999999999999999999999999999999999999999999998888899
Q ss_pred EEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHh
Q 012673 372 VVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451 (458)
Q Consensus 372 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 451 (458)
+++++++.++. ..+.++|++++++ .|+.+++|..++++ ++||+|.+||++|++|++++.+.+
T Consensus 510 ~~~~vv~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~~i~~~-~~iP~t~~GKi~r~~L~~~~~~~~ 571 (573)
T PRK05605 510 VVAAVVLEPGA----------------ALDPEGLRAYCRE-HLTRYKVPRRFYHV-DELPRDQLGKVRRREVREELLEKL 571 (573)
T ss_pred EEEEEEECCCC----------------CCCHHHHHHHHHH-hCccccCCcEEEEe-ccCCCCCcccccHHHHHHHHHHHh
Confidence 99999987652 1346789999998 69999999987775 779999999999999999998876
Q ss_pred h
Q 012673 452 K 452 (458)
Q Consensus 452 ~ 452 (458)
+
T Consensus 572 ~ 572 (573)
T PRK05605 572 G 572 (573)
T ss_pred c
Confidence 5
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=428.16 Aligned_cols=356 Identities=21% Similarity=0.326 Sum_probs=285.2
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHH----HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEe
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI----AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVF 136 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~----~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~ 136 (458)
...++++++++|||||||.||||+++|+++.++..... ..++...+++.++.+|++|.+++...+.+++.|+++++
T Consensus 165 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~ 244 (540)
T PRK05857 165 DQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVT 244 (540)
T ss_pred CCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHhhcceeEEe
Confidence 34678999999999999999999999999876543322 12355678899999999999998888889999998776
Q ss_pred cCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 137 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
...++..+++.|+++++|+++++|+++..|++...... ...+++|.+++||++++....+ +.+.+ ++++++.||+
T Consensus 245 -~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~~~~~~~~-~~~~~-g~~i~~~YG~ 319 (540)
T PRK05857 245 -GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN--ATVPSLRLVGYGGSRAIAADVR-FIEAT-GVRTAQVYGL 319 (540)
T ss_pred -cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC--CcCccceEEEEcCccCCchhHH-HHHHh-CCeeecccCC
Confidence 45688899999999999999999999999987643322 2457899999999999988775 44566 7999999999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCC-----------CCccEEEEec
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS-----------SHVGRILTRG 285 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~-----------~~~Gel~v~g 285 (458)
||++............. .....+++|+|++++++++++++. ++.|||+++|
T Consensus 320 TE~~~~~~~~~~~~~~~------------------~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g 381 (540)
T PRK05857 320 SETGCTALCLPTDDGSI------------------VKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKS 381 (540)
T ss_pred CcCCceeeecccccccc------------------cccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeC
Confidence 99985332211110000 000123699999999999998652 4679999999
Q ss_pred cccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecC
Q 012673 286 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 365 (458)
Q Consensus 286 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 365 (458)
++++.|||+++..+.+.+ .+|||+|||+|+++++|++++.||.+|+||++|++|+|.+||++|..||+|.+++|+++++
T Consensus 382 ~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~ 460 (540)
T PRK05857 382 PANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPD 460 (540)
T ss_pred cchhhhhhCCccchhhhc-CCCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCc
Confidence 999999999998888776 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 366 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 366 ~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
...++.+++++++.+.... .....-.+.+.+++++ .+++|++|+.++++ +++|+|++||++|+.|++
T Consensus 461 ~~~~~~~~~~vv~~~~~~~-----------~~~~~l~~~~~~~~~~-~l~~~~~P~~v~~~-~~iP~t~~GKi~r~~l~~ 527 (540)
T PRK05857 461 EEFGALVGLAVVASAELDE-----------SAARALKHTIAARFRR-ESEPMARPSTIVIV-TDIPRTQSGKVMRASLAA 527 (540)
T ss_pred cccccceEEEEEeCCCCCh-----------hhHHHHHHHHHHHHHh-hhccccCCeEEEEh-hcCCCCCCcceeHHHHHH
Confidence 8888888888877543110 0000112345556666 69999999987775 789999999999999999
Q ss_pred HHHHHhhc
Q 012673 446 EVMSHLKS 453 (458)
Q Consensus 446 ~~~~~~~~ 453 (458)
.+.++-..
T Consensus 528 ~~~~~~~~ 535 (540)
T PRK05857 528 AATADKAR 535 (540)
T ss_pred hhhhccce
Confidence 88865443
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=435.50 Aligned_cols=351 Identities=19% Similarity=0.180 Sum_probs=278.8
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-CC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FE 141 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~ 141 (458)
+++|+++|+|||||||.||||+++|.+++.........++++++|+++++.|++|+++...++.+|..|+++++.+. ++
T Consensus 354 ~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~ 433 (728)
T PLN03052 354 PVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPL 433 (728)
T ss_pred CCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCC
Confidence 56899999999999999999999999987666555556788999999999999999998778899999999999874 56
Q ss_pred hHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCcc
Q 012673 142 SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSS 221 (458)
Q Consensus 142 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 221 (458)
+..+++.++++++|++.++|+++..|.+.... ...++++||.++++|++++++...++.+.++..++++.||+||+++
T Consensus 434 ~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~--~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~ 511 (728)
T PLN03052 434 GRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCM--AGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGG 511 (728)
T ss_pred CChHHHHHHHHCCCEEEECHHHHHHHHhcCCc--ccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCc
Confidence 67899999999999999999999988765321 1224579999999999999999888888774468999999999976
Q ss_pred ceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CC--CccEEEEecccc--chhh
Q 012673 222 SLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SS--HVGRILTRGAHV--MLRY 292 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~--~~Gel~v~g~~~--~~gy 292 (458)
.+.......+ ...+++|.|.++++++++|++ .| +.|||+++++.+ ..+|
T Consensus 512 ~~~~~~~~~~----------------------~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~ 569 (728)
T PLN03052 512 GFVTGSLLQP----------------------QAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASSTL 569 (728)
T ss_pred ccccCCCCCC----------------------CCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCCccc
Confidence 4332111100 012358999999999999975 23 369999986532 3455
Q ss_pred hcCcCCCCccc------CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHh-cCcCcceEEEEeecC
Q 012673 293 WDQFLAKPSVS------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL-QHPGIIGIVVVGIAN 365 (458)
Q Consensus 293 ~~~~~~~~~~~------~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~ 365 (458)
+++... ...+ .++.||+|||+++++++|+++++||+||+||++|++|+|.|||++|. .||+|.|++|+++++
T Consensus 570 ~~~~~~-~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d 648 (728)
T PLN03052 570 LNADHY-KVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPP 648 (728)
T ss_pred cCchhh-hhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeec
Confidence 554321 1111 23459999999999999999999999999999999999999999995 799999999999999
Q ss_pred CCCc-ceEEEEEEec--cccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHH
Q 012673 366 ARLT-EMVVACVRLR--ESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDE 442 (458)
Q Consensus 366 ~~~~-~~~~a~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~ 442 (458)
+..| +.++++|+++ ++... . ...-.+.+++.+++ .|+++++|+.|+++ ++||+|++||++|+.
T Consensus 649 ~~~g~e~~~afVvl~~~~g~~~----------~--~~~L~~~i~~~i~~-~l~~~~~p~~i~~v-~~lP~T~sGKi~Rr~ 714 (728)
T PLN03052 649 PGGGPEQLVIAAVLKDPPGSNP----------D--LNELKKIFNSAIQK-KLNPLFKVSAVVIV-PSFPRTASNKVMRRV 714 (728)
T ss_pred CCCCcEEEEEEEEEecCCCCCC----------C--HHHHHHHHHHHHHh-hcCCccCCCEEEEc-CCCCCCCchHHHHHH
Confidence 8776 8899999987 33110 0 00113345555666 69999999887765 789999999999999
Q ss_pred HHHHHHHHhh
Q 012673 443 VRREVMSHLK 452 (458)
Q Consensus 443 l~~~~~~~~~ 452 (458)
|++.+.+...
T Consensus 715 Lr~~~~~~~~ 724 (728)
T PLN03052 715 LRQQLAQELS 724 (728)
T ss_pred HHHHHHhhhh
Confidence 9999887654
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=422.58 Aligned_cols=345 Identities=28% Similarity=0.480 Sum_probs=299.1
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 139 (458)
...++++++++|||||||.||+|+++|+++..........++++++|++++.+|++|..++ ..++.++..|+++++.+.
T Consensus 152 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 231 (504)
T PRK07514 152 PRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPK 231 (504)
T ss_pred cCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCC
Confidence 3467899999999999999999999999999888777778889999999999999999987 467789999999999998
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
.++..+++.+ .++|++.++|.++..++....... ...+++|.+++||+++++++.+.+.+.+ +.++++.||+||+
T Consensus 232 ~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~ 306 (504)
T PRK07514 232 FDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTR--EAAAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMTET 306 (504)
T ss_pred CCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCc--ccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeecccccc
Confidence 9999999999 479999999999998876533222 2346899999999999999999999988 7899999999998
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhhh
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy~ 293 (458)
+....... ... ....++|.|+++++++++|++ .|+.|||+++|++++.||+
T Consensus 307 ~~~~~~~~--~~~---------------------~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~ 363 (504)
T PRK07514 307 NMNTSNPY--DGE---------------------RRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYW 363 (504)
T ss_pred cccccCCc--ccc---------------------ccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCcccccc
Confidence 75432111 000 012358999999999999943 4678999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
+++..+...+..++||+|||+++++++|++++.||++|+||++|++|+|.+||+++.++++|.+++|+++++...++.++
T Consensus 364 ~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 443 (504)
T PRK07514 364 RMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVT 443 (504)
T ss_pred CCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEE
Confidence 99999888888889999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHh
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 451 (458)
+++++.++. ..+.+++++++++ .++++++|+.++++ +++|+|++||++|+.|++++.+.+
T Consensus 444 ~~~~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~~p~t~~gK~~r~~l~~~~~~~~ 503 (504)
T PRK07514 444 AVVVPKPGA----------------ALDEAAILAALKG-RLARFKQPKRVFFV-DELPRNTMGKVQKNLLREQYADLF 503 (504)
T ss_pred EEEEECCCC----------------CCCHHHHHHHHHh-hcccCCCCcEEEEe-ccCCCCCCcceeHHHHHHHHHhhc
Confidence 999886542 1346789999998 69999999987775 789999999999999999987654
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-52 Score=421.89 Aligned_cols=346 Identities=27% Similarity=0.485 Sum_probs=299.2
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCCh
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFES 142 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~ 142 (458)
.++|+++++|||||||.||+|+++|.++..+.......+++..+|++++.+|++|.+++. ++.+++.|+++++.+.+++
T Consensus 166 ~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~~~ 244 (524)
T PRK06188 166 LPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRGGTVIVLAKFDP 244 (524)
T ss_pred CCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHHHHHcCCEEEEcCCCCH
Confidence 456799999999999999999999999998888888888999999999999999998864 5788999999999999999
Q ss_pred HHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccc
Q 012673 143 KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSS 222 (458)
Q Consensus 143 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 222 (458)
..+++.++++++|++.++|+++..+++....... .++++|.+++||++++++....+.+.+ +..+++.||+||++..
T Consensus 245 ~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~--~l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~ 321 (524)
T PRK06188 245 AEVLRAIEEQRITATFLVPTMIYALLDHPDLRTR--DLSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMV 321 (524)
T ss_pred HHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCC--CCcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeCccccCCc
Confidence 9999999999999999999999999876543332 457899999999999999999988888 6789999999999765
Q ss_pred eeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhcCcC
Q 012673 223 LTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWDQFL 297 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~~~~ 297 (458)
++........... .....++|+|+++++++++|++ .|+.|||+++|+.++.||++++.
T Consensus 322 ~~~~~~~~~~~~~-----------------~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~ 384 (524)
T PRK06188 322 ITYLRKRDHDPDD-----------------PKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPE 384 (524)
T ss_pred eeecCchhccccc-----------------cccCCccccccCCcEEEEEcCCCCCCCCCCeeEEEEECcchhhhhcCChH
Confidence 5443221110000 0122358999999999999875 57789999999999999999988
Q ss_pred CCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEE
Q 012673 298 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVR 377 (458)
Q Consensus 298 ~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~ 377 (458)
.+...+ .++||+|||+++++++|++++.||.+|+|+++|++|+|.+||++|.++++|.+++|++.+++..++.++++++
T Consensus 385 ~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 463 (524)
T PRK06188 385 ETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVV 463 (524)
T ss_pred Hhhhhh-cCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEE
Confidence 877666 5789999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred eccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHH
Q 012673 378 LRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448 (458)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~ 448 (458)
+.++. ....+++++++++ .++.|++|..++++ ++||+|++||++|++|++.|.
T Consensus 464 ~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~~P~t~~gKi~r~~L~~~~~ 516 (524)
T PRK06188 464 LRPGA----------------AVDAAELQAHVKE-RKGSVHAPKQVDFV-DSLPLTALGKPDKKALRARYW 516 (524)
T ss_pred ECCCC----------------CCCHHHHHHHHHH-hcccCCCCcEEEEe-cCCCCCccccccHHHHHHHHH
Confidence 87542 1345789999988 69999999998775 789999999999999999984
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=424.05 Aligned_cols=351 Identities=34% Similarity=0.554 Sum_probs=304.1
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~ 140 (458)
...++++++++|||||||.||+|.++|+++..........++++++|++++.+|++|.+++...+.++..|+++++.+.+
T Consensus 163 ~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~ 242 (521)
T PRK06187 163 DIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF 242 (521)
T ss_pred CCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC
Confidence 45678999999999999999999999999988888778888999999999999999999987777799999999999888
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.++++++|+++++|+++..|.+...... ..+.++|.+++||+++++++++.+.+.| ++++++.||+||++
T Consensus 243 ~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~--~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~tE~~ 319 (521)
T PRK06187 243 DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYF--VDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETS 319 (521)
T ss_pred CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCc--cCcchhhEEEEcCcCCCHHHHHHHHHHh-CcchheeeccCccC
Confidence 99999999999999999999999999988765422 3457899999999999999999999999 89999999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCC-------CCccEEEEeccccchhhh
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS-------SHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~-------~~~Gel~v~g~~~~~gy~ 293 (458)
..+........... ......++|.|++++.++++|++. ++.|||+++|+.++.||+
T Consensus 320 ~~~~~~~~~~~~~~-----------------~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~Gel~v~~~~~~~~y~ 382 (521)
T PRK06187 320 PVVSVLPPEDQLPG-----------------QWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYW 382 (521)
T ss_pred cccccCCccccccc-----------------ccccCCccccccCCeEEEEECCCCCCCCCCCCCeeEEEEECcchhhhhc
Confidence 65554322111000 000223589999999999998762 788999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
+++..+...+. ++||+|||+++++++|++++.||.+|+|+++|.+++|.+||++|.++++|.++++++++++..++.++
T Consensus 383 ~~~~~~~~~~~-~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 461 (521)
T PRK06187 383 NRPEATAETID-GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPV 461 (521)
T ss_pred CCHHHHHHHhh-CCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEE
Confidence 98877666653 56999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
+++++.++.. .+.+++++++++ .++.+++|..++++ ++||+|++||++|+.|++.|.+.
T Consensus 462 ~~v~~~~~~~----------------~~~~~l~~~l~~-~l~~~~~p~~i~~v-~~~P~t~~gK~~r~~l~~~~~~~ 520 (521)
T PRK06187 462 AVVVLKPGAT----------------LDAKELRAFLRG-RLAKFKLPKRIAFV-DELPRTSVGKILKRVLREQYAEG 520 (521)
T ss_pred EEEEECCCCC----------------CCHHHHHHHHHH-hccCCCCceEEEEc-cCCCCCCCCCeeHHHHHHHHhcC
Confidence 9999876521 346789999988 69999999988875 78999999999999999998753
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-52 Score=427.66 Aligned_cols=367 Identities=27% Similarity=0.395 Sum_probs=285.1
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCCh
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFES 142 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~ 142 (458)
.++|+++|+|||||||.||+|+++|+++..........+.+...+++++.+|++|..++...+.++..|+++++.+.+++
T Consensus 184 ~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~ 263 (579)
T PLN03102 184 DEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTA 263 (579)
T ss_pred CCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCCh
Confidence 56899999999999999999999999976554444445566778899999999999998777888999999999988899
Q ss_pred HHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccc
Q 012673 143 KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSS 222 (458)
Q Consensus 143 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 222 (458)
..+++.|+++++|++.++|+++..|++...... ....+++.+++||+++++.+.+.+.+ + ++++++.||+||+++.
T Consensus 264 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~~~~~~~gg~~~~~~~~~~~~~-~-g~~i~~~YG~tE~~~~ 339 (579)
T PLN03102 264 PEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL--SPRSGPVHVLTGGSPPPAALVKKVQR-L-GFQVMHAYGLTEATGP 339 (579)
T ss_pred HHHHHHHHHcCCeEEEeChHHHHHHHhCccccc--CCcccceEEEECCCCCCHHHHHHHHH-c-CCeEEeecCccccCcc
Confidence 999999999999999999999999987632221 12346788999999999999998875 5 7899999999999864
Q ss_pred eeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecC------CCCCccEEEEeccccchhhhcCc
Q 012673 223 LTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD------GSSHVGRILTRGAHVMLRYWDQF 296 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~------~~~~~Gel~v~g~~~~~gy~~~~ 296 (458)
++.+.........+.... .......+..+.++++++++..+. +.++.|||+++|++++.|||+++
T Consensus 340 ~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~ 410 (579)
T PLN03102 340 VLFCEWQDEWNRLPENQQ---------MELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNP 410 (579)
T ss_pred ccccccccccccCCcccc---------cccccCCCcccccccceEEeccccccccCCCCCCceEEEEECcchhhhhcCCh
Confidence 433211110000000000 000001122344444444332211 12367999999999999999999
Q ss_pred CCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEE
Q 012673 297 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACV 376 (458)
Q Consensus 297 ~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v 376 (458)
..+...+ .+|||+|||+|++++||++++.||.+|+|+++|++|+|.+||++|.+||.|.+++|++++++..++.+++++
T Consensus 411 ~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v 489 (579)
T PLN03102 411 KATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFV 489 (579)
T ss_pred hhhHhhh-ccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEE
Confidence 8888776 468999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHh
Q 012673 377 RLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451 (458)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 451 (458)
++.++....++.. .......+++++++++ .|+.|++|..++++ ++||+|++||++|+.|++...+..
T Consensus 490 ~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~-~L~~~~~P~~i~~~-~~~P~t~~gKi~r~~L~~~~~~~~ 556 (579)
T PLN03102 490 VLEKGETTKEDRV------DKLVTRERDLIEYCRE-NLPHFMCPRKVVFL-QELPKNGNGKILKPKLRDIAKGLV 556 (579)
T ss_pred EecCccccccccc------ccccccHHHHHHHHHh-hcccccCCeEEEEc-ccCCCCCcccccHHHHHHHHHHhh
Confidence 9876532111100 0011135689999998 69999999998775 789999999999999999887643
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-52 Score=419.85 Aligned_cols=352 Identities=24% Similarity=0.332 Sum_probs=294.2
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC--
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-- 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-- 139 (458)
..+++.++++|||||||.||+|+++|+++..+..+....+++..++++++.+|++|..++..++.++..|+++++.++
T Consensus 138 ~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~ 217 (502)
T TIGR01734 138 VKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDI 217 (502)
T ss_pred CCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHH
Confidence 467899999999999999999999999998888877777888999999999999999999888999999999998875
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.++..+++.+++++++.+.++|+++..++....... ...++++.++++|+++++++.+.+.+.++++++++.||+||
T Consensus 218 ~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~--~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE 295 (502)
T TIGR01734 218 TNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQ--ENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTE 295 (502)
T ss_pred hcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccccc--ccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCc
Confidence 578999999999999999999999887765422221 23468999999999999999999999998999999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~ 293 (458)
++..++.......... .....++|.+.+++++++++++ .++.|||+++|+.++.||+
T Consensus 296 ~~~~~~~~~~~~~~~~------------------~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~ 357 (502)
T TIGR01734 296 ATVAVTSVKITQEILD------------------QYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIVGPSVSKGYL 357 (502)
T ss_pred ceEEEEEEEccccccc------------------cCCccccccccCCCEEEEECCCCCCCCCCCeeEEEEcccccccccc
Confidence 8754443321111100 0122358999999999999875 5778999999999999999
Q ss_pred cCcCCCCccc---CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeec-CCCCc
Q 012673 294 DQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA-NARLT 369 (458)
Q Consensus 294 ~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~-~~~~~ 369 (458)
++++.+...+ .+.+||+|||+|+++++ +++++||.+|+|+.+|++|+|.+||+++.++|.|.+++++++. +...+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~ 436 (502)
T TIGR01734 358 NNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKV 436 (502)
T ss_pred CCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCc
Confidence 9988877654 34579999999999987 9999999999999999999999999999999999999999976 44556
Q ss_pred ceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHH
Q 012673 370 EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448 (458)
Q Consensus 370 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~ 448 (458)
+.+++++++.+...... .....++++.+++ .+++|++|+.++++ ++||+|++||++|++|++.+.
T Consensus 437 ~~~~~~v~~~~~~~~~~------------~~~~~~i~~~~~~-~l~~~~~P~~~~~v-~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 437 EYLIAAIVPETEDFEKE------------FQLTKAIKKELKK-SLPAYMIPRKFIYR-DQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred eEEEEEEEecccccccc------------hhhHHHHHHHHhh-hChhhcCCcEEEEc-cccCCCCCCcccHHHHHHhhc
Confidence 88899998765421100 0113678888988 79999999998775 789999999999999999864
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=420.39 Aligned_cols=348 Identities=25% Similarity=0.344 Sum_probs=294.7
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFE 141 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~ 141 (458)
..++++++++|||||||.||+|+++|+++..+.......+++..++++++.+|++|.+|+..++.++..|+++++.+.++
T Consensus 178 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~ 257 (540)
T PRK06164 178 ADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFD 257 (540)
T ss_pred CCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCC
Confidence 34689999999999999999999999999988888888889999999999999999999988899999999999999899
Q ss_pred hHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCC-CCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 142 SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGG-GGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 142 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G-~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
+..+++.|+++++|+++++|.++..|.+... ....++++|.+.++| .+...++.+++.+. ++++++.||+||++
T Consensus 258 ~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~ 332 (540)
T PRK06164 258 AARTARALRRHRVTHTFGNDEMLRRILDTAG---ERADFPSARLFGFASFAPALGELAALARAR--GVPLTGLYGSSEVQ 332 (540)
T ss_pred HHHHHHHHHHhCCeeecCCHHHHHHHHHhhc---ccCCCcceeeeeeccCCcchHHHHHHHhhc--CCceecceeecccc
Confidence 9999999999999999999999999987721 122356788876665 55556666666654 78999999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccC-CCceEEEecCC------CCCccEEEEeccccchhhh
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG------SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy~ 293 (458)
..++......... ....+.|.++ +++.++++|++ .|+.|||+++|++++.||+
T Consensus 333 ~~~~~~~~~~~~~--------------------~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~ 392 (540)
T PRK06164 333 ALVALQPATDPVS--------------------VRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYL 392 (540)
T ss_pred ceeeccCCCCCCc--------------------ceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEeccccccccc
Confidence 6544322211100 0112357775 78999999854 5788999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
+++..+...+..++||+|||+|+++++|++++.||.+|+|+++|++|+|.+||++|.++++|.+++|++++. ..++.++
T Consensus 393 ~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~~~~~~ 471 (540)
T PRK06164 393 DNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DGKTVPV 471 (540)
T ss_pred CCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CCceeEE
Confidence 999999988888999999999999999999999999999999999999999999999999999999999884 4467788
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcc---cchHHHHHHHHHHH
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTG---KIRRDEVRREVMSH 450 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~G---Kv~r~~l~~~~~~~ 450 (458)
+++++.++. ..+.+++.++|++ .+++|++|+.++++ +++|+|++| |++|+.|++.+++.
T Consensus 472 ~~vv~~~~~----------------~~~~~~l~~~~~~-~l~~~~~P~~i~~~-~~~P~t~~g~~~Ki~r~~L~~~~~~~ 533 (540)
T PRK06164 472 AFVIPTDGA----------------SPDEAGLMAACRE-ALAGFKVPARVQVV-EAFPVTESANGAKIQKHRLREMAQAR 533 (540)
T ss_pred EEEEeCCCC----------------CCCHHHHHHHHHh-hcccCcCCcEEEEe-cCCCCCCCCccccccHHHHHHHHHHh
Confidence 898886542 1356789999998 69999999987775 789999999 99999999998877
Q ss_pred hhc
Q 012673 451 LKS 453 (458)
Q Consensus 451 ~~~ 453 (458)
++.
T Consensus 534 ~~~ 536 (540)
T PRK06164 534 LAA 536 (540)
T ss_pred hhh
Confidence 654
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-52 Score=425.58 Aligned_cols=350 Identities=29% Similarity=0.446 Sum_probs=299.8
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~ 140 (458)
..++|+++|+|||||||.||+|+++|+++..+.......+++.++|++++.+|++|.+|+ ..++.+++.|+++++.+.+
T Consensus 184 ~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~ 263 (547)
T PRK06087 184 THGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIF 263 (547)
T ss_pred CCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCC
Confidence 467899999999999999999999999998877777777888999999999999999997 4677889999999999999
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.|+++++|+++++|+.+..++....... ..++++|.+++||+++++++.+.+.+. ++++++.||+||++
T Consensus 264 ~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~--~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~~YG~TE~~ 339 (547)
T PRK06087 264 TPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQP--ADLSALRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESS 339 (547)
T ss_pred CHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCC--CCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEEEecccccC
Confidence 99999999999999999998888877776544322 245789999999999999999887764 79999999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhcC
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWDQ 295 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~~ 295 (458)
...+........ ....++|.|++++.++++|++ .|+.|||+++|+.++.||+++
T Consensus 340 ~~~~~~~~~~~~---------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~ 398 (547)
T PRK06087 340 PHAVVNLDDPLS---------------------RFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDE 398 (547)
T ss_pred CccccCCCcchh---------------------hcCCcCCccCCCceEEEEcCCCCCCcCCCcceEEEecccccccccCC
Confidence 654432110000 012258999999999999875 577899999999999999999
Q ss_pred cCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEE
Q 012673 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVAC 375 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~ 375 (458)
++.+...++.++||+|||+++++++|+++++||.+|+|+.+|++|+|.+||++|.++|+|.++++++.+++..+++++++
T Consensus 399 ~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~ 478 (547)
T PRK06087 399 PELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAY 478 (547)
T ss_pred HHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEE
Confidence 98887777778999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 376 VRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 376 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
+++.+.. ...+.+++.+++..+.++.+++|..+.++ ++||+|++||++|+.|++.+.+++.
T Consensus 479 v~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~~P~~i~~v-~~iP~t~sGK~~r~~l~~~~~~~~~ 539 (547)
T PRK06087 479 VVLKAPH---------------HSLTLEEVVAFFSRKRVAKYKYPEHIVVI-DKLPRTASGKIQKFLLRKDIMRRLT 539 (547)
T ss_pred EEECCCC---------------CCCCHHHHHHHHHhccccccCCCeEEEEe-ccCCCCCCCcCcHHHHHHHHHHHhh
Confidence 9986531 11345677887754479999999988875 7899999999999999999998864
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-52 Score=460.11 Aligned_cols=354 Identities=23% Similarity=0.333 Sum_probs=297.8
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEecC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIP- 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~- 138 (458)
...++|+++++|||||||.||+|+++|+++..+.......+++.++|++++.+|++|.+++. .++.++..|+++++.+
T Consensus 778 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~ 857 (1146)
T PRK08633 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPD 857 (1146)
T ss_pred CCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCC
Confidence 45689999999999999999999999999998888888888899999999999999999985 4788999999998876
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..+++.++++++|++.++|++++.+.+...... ...+++|.+++||+++++++.+.+++.+ ++++++.||+||
T Consensus 858 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE 934 (1146)
T PRK08633 858 PTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHP--LMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATE 934 (1146)
T ss_pred CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCc--ccCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCeeccccccc
Confidence 4789999999999999999999999998877543222 2357899999999999999999999998 799999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy 292 (458)
++..++.......... . + ........++|+|+|+++++++|++ .|+.|||+++|++++.||
T Consensus 935 ~~~~~~~~~~~~~~~~-~---------~---~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY 1001 (1146)
T PRK08633 935 TSPVASVNLPDVLAAD-F---------K---RQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGY 1001 (1146)
T ss_pred CcceEEEecCcccccc-c---------c---cccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccc
Confidence 9875543221100000 0 0 0000123469999999999999864 478899999999999999
Q ss_pred hcCcCCCCcccC---CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCc--CcceEEEEeecCCC
Q 012673 293 WDQFLAKPSVST---GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP--GIIGIVVVGIANAR 367 (458)
Q Consensus 293 ~~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~--~v~~~~v~~~~~~~ 367 (458)
+++++.+...+. +++||+|||++++++||++++.||.||+||++|++|+|.|||++|.+|| .+.+++|++++++.
T Consensus 1002 ~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~ 1081 (1146)
T PRK08633 1002 LGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEK 1081 (1146)
T ss_pred cCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCC
Confidence 999988877653 2489999999999999999999999999999999999999999999998 56689999999999
Q ss_pred CcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHH
Q 012673 368 LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREV 447 (458)
Q Consensus 368 ~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~ 447 (458)
.++.+++++++.+ .+.+++++++.++.+++|++|+.++++ +++|+|++||++|+.|++..
T Consensus 1082 ~g~~~~~~v~~~~-------------------~~~~~l~~~~~~~~l~~~~~P~~i~~~-~~iP~t~~GKi~r~~L~~~~ 1141 (1146)
T PRK08633 1082 KGEKLVVLHTCGA-------------------EDVEELKRAIKESGLPNLWKPSRYFKV-EALPLLGSGKLDLKGLKELA 1141 (1146)
T ss_pred CCcEEEEEEecCc-------------------cCHHHHHHHHHhcCCCcccCCcEEEEe-cCcCCCCCCCCcHHHHHHHH
Confidence 9999999988622 235678888875579999999997765 78999999999999999886
Q ss_pred HHH
Q 012673 448 MSH 450 (458)
Q Consensus 448 ~~~ 450 (458)
.+.
T Consensus 1142 ~~~ 1144 (1146)
T PRK08633 1142 LAL 1144 (1146)
T ss_pred HHh
Confidence 554
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=399.85 Aligned_cols=320 Identities=28% Similarity=0.409 Sum_probs=270.8
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEec---CC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFI---PK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~---~~ 139 (458)
.++|+++++|||||||.||+|+++|+++..........+ ...++++..+|++|.+++..++.++..|+++++. ..
T Consensus 33 ~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~~ 110 (358)
T PRK07824 33 IDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSAG 110 (358)
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCCC
Confidence 468999999999999999999999999987766554433 3567888999999999998888899999998873 35
Q ss_pred CChHHHHHHHHHhc--ceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 140 FESKSALEAVEQHC--VTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 140 ~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
+++..+++.+++++ .++...+|..+..++.... ......++|.+++||+++++++.+.+.+ + ++++++.||+|
T Consensus 111 ~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~---~~~~~~~l~~i~~gG~~l~~~~~~~~~~-~-~~~v~~~YG~T 185 (358)
T PRK07824 111 FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA---ATAALAELDAVLVGGGPAPAPVLDAAAA-A-GINVVRTYGMS 185 (358)
T ss_pred cCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc---ccCCcccceEEEECCCCCCHHHHHHHHh-c-CCcEEecccCC
Confidence 78999999999998 4566678877766554322 1123568999999999999999998886 4 79999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEeccccchhhhcCcC
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFL 297 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~~~~~gy~~~~~ 297 (458)
|++..+. ..|.|++++++++.+ |||+++|+.++.||++++.
T Consensus 186 E~~~~~~---------------------------------~~G~~~~g~~v~i~~------Gei~v~g~~~~~gY~~~~~ 226 (358)
T PRK07824 186 ETSGGCV---------------------------------YDGVPLDGVRVRVED------GRIALGGPTLAKGYRNPVD 226 (358)
T ss_pred ccCCCcC---------------------------------cCceeCCCCEEEecC------CEEEEecCccccccCCCcc
Confidence 9874321 268899999999843 9999999999999999876
Q ss_pred CCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEE
Q 012673 298 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVR 377 (458)
Q Consensus 298 ~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~ 377 (458)
.+ .+..++||+|||++++ ++|+++++||.||+||++|++|+|.+||++|.+||+|.+++|++++++..++.++++++
T Consensus 227 ~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~ 303 (358)
T PRK07824 227 PD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVV 303 (358)
T ss_pred cc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEE
Confidence 54 3446789999999999 89999999999999999999999999999999999999999999999888999999997
Q ss_pred eccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 378 LRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
...+. ....+++++++++ .++.|++|..++++ ++||+|++||++|+.|++.+.+
T Consensus 304 ~~~~~----------------~~~~~~i~~~~~~-~l~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 304 GDGGP----------------APTLEALRAHVAR-TLDRTAAPRELHVV-DELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred eCCCC----------------CcCHHHHHHHHHh-hCccccCCCEEEEe-cCCCCCCCccccHHHHHHHhhc
Confidence 76431 2456789999998 69999999988775 7899999999999999998864
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=412.08 Aligned_cols=356 Identities=24% Similarity=0.305 Sum_probs=303.8
Q ss_pred CCCCCCCceEEEEeccCCCCCccceecccHHH-HHHHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEe
Q 012673 59 THSWAPEGAVIICFTSGTTGSPKGVVISHSAL-IVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVF 136 (458)
Q Consensus 59 ~~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~ 136 (458)
....+.+|+.+|+|||||||.||++.+++... +.........++++++|++++...+.|+.+.+ ..+++|+.|+++++
T Consensus 233 ~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl 312 (626)
T KOG1175|consen 233 CVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVL 312 (626)
T ss_pred ceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEE
Confidence 34567899999999999999999999998764 45556666788999999999999999998874 56789999999999
Q ss_pred cCC--CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecc
Q 012673 137 IPK--FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAY 214 (458)
Q Consensus 137 ~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 214 (458)
.+. +++..+++.+.++++|+++..|+.++.|.+..+........++||.+.++||++.++.+.++.+.+...+|++.|
T Consensus 313 ~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~ 392 (626)
T KOG1175|consen 313 YEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETY 392 (626)
T ss_pred EcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhce
Confidence 763 699999999999999999999999999888766655544447899999999999999999999999433699999
Q ss_pred ccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----C-CCccEEEEecc--
Q 012673 215 GMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----S-SHVGRILTRGA-- 286 (458)
Q Consensus 215 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~-~~~Gel~v~g~-- 286 (458)
|+||+|..+..+..... ....++.+.|.++..+.|+|++ + .+.|+|+++.+
T Consensus 393 ~qtEtG~~~i~~~~g~~---------------------p~~pg~~~~p~~g~~v~i~de~g~~~~~~~~~G~l~~~~~~P 451 (626)
T KOG1175|consen 393 GQTETGGICITPKPGKL---------------------PIKPGSAGKPFPGYDVQILDENGNELPPSTGNGELRLKPPWP 451 (626)
T ss_pred eeeccCceeeeccCCCC---------------------CcCccccCCCCCCcceEEECCCCCCcCCCCceeEEEEeCCCC
Confidence 99999987665443321 1134579999999999999985 2 27899999984
Q ss_pred -ccchhhhcCcCCCCcc--cCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEee
Q 012673 287 -HVMLRYWDQFLAKPSV--STGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 363 (458)
Q Consensus 287 -~~~~gy~~~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 363 (458)
+.+++||+++++-... ....|+|.|||.+++|+||++++.||.||+|+++|.++++.|||+++.+||.|.|++||+.
T Consensus 452 ~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~ 531 (626)
T KOG1175|consen 452 PGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGS 531 (626)
T ss_pred ccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecC
Confidence 6689999998733322 3348999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHH
Q 012673 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 443 (458)
Q Consensus 364 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l 443 (458)
+++..||.++|||+++++....+ .-.++|++++++ .+.++..|+.++++ +.||+|.|||+.|+.|
T Consensus 532 p~~~~ge~v~aFvvl~~g~~~~~-------------~L~kel~~~VR~-~igp~a~P~~I~~v-~~LPkTrSGKimRr~l 596 (626)
T KOG1175|consen 532 PDPIKGEVVLAFVVLKSGSHDPE-------------QLTKELVKHVRS-VIGPYAVPRLIVFV-PGLPKTRSGKIMRRAL 596 (626)
T ss_pred CCCCCCeEEEEEEEEcCCCCChH-------------HHHHHHHHHHHh-hcCcccccceeEec-CCCCccccchhHHHHH
Confidence 99999999999999999843221 235788899998 79999999998775 6799999999999999
Q ss_pred HHHHHHH
Q 012673 444 RREVMSH 450 (458)
Q Consensus 444 ~~~~~~~ 450 (458)
|+..+.+
T Consensus 597 rki~~g~ 603 (626)
T KOG1175|consen 597 RKIASGK 603 (626)
T ss_pred HHHhccC
Confidence 9998865
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=501.02 Aligned_cols=347 Identities=21% Similarity=0.277 Sum_probs=301.1
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
...++++|||+|||||||+||||+++|+++.+........+++.++|+++++.|++|..++..++.+|..|+++++.+.
T Consensus 3233 ~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~ 3312 (3956)
T PRK12467 3233 RVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDND 3312 (3956)
T ss_pred cCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCcc
Confidence 4578999999999999999999999999999988888889999999999999999999999999999999999999875
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
+++..+++.|+++++|++.++|+++..+++.... ...+++|.+++|||++++++.+.+.+.+++++++|.||+||
T Consensus 3313 ~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~----~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE 3388 (3956)
T PRK12467 3313 LWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG----ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTE 3388 (3956)
T ss_pred cCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc----cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccch
Confidence 7899999999999999999999999988764321 23468999999999999999999999888899999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~ 293 (458)
++..++.......... .....++|+|+++++++|+|++ .|++|||+|+|+++++||+
T Consensus 3389 ~~~~~~~~~~~~~~~~------------------~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~GEL~i~G~~v~~GY~ 3450 (3956)
T PRK12467 3389 AVVTVTLWKCGGDAVC------------------EAPYAPIGRPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLARGYH 3450 (3956)
T ss_pred hEeeeEEEeccccccc------------------CCCCCCCccccCCCEEEEECCCCCCCCCCCCceEEEcchhhhhhcc
Confidence 9876554332111000 0012369999999999999875 6889999999999999999
Q ss_pred cCcCCCCcccCC-------CceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCC
Q 012673 294 DQFLAKPSVSTG-------EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 366 (458)
Q Consensus 294 ~~~~~~~~~~~~-------~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 366 (458)
++++.|.+.|.. .+||+|||+|++++||+++++||+||+||++|++|+|.|||++|.++|+|.+++|++..+
T Consensus 3451 ~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~- 3529 (3956)
T PRK12467 3451 QRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDG- 3529 (3956)
T ss_pred CCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEecC-
Confidence 999999887754 457999999999999999999999999999999999999999999999999999998753
Q ss_pred CCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHH
Q 012673 367 RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446 (458)
Q Consensus 367 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~ 446 (458)
..++.+++++++.... ....+++++++++ .||.||+|..++++ ++||+|++||++|++|.+.
T Consensus 3530 ~~~~~lva~v~~~~~~----------------~~~~~~l~~~l~~-~Lp~y~vP~~~~~l-~~lP~t~~GKidR~~L~~~ 3591 (3956)
T PRK12467 3530 AGGKQLVAYVVPADPQ----------------GDWRETLRDHLAA-SLPDYMVPAQLLVL-AAMPLGPNGKVDRKALPDP 3591 (3956)
T ss_pred CCCcEEEEEEeCCCCC----------------cccHHHHHHHHhc-cCChhhCCCeeeee-ccCCCCCCCccchhhcCCC
Confidence 4578899999976531 1346789999998 79999999998775 7899999999999999875
Q ss_pred HH
Q 012673 447 VM 448 (458)
Q Consensus 447 ~~ 448 (458)
..
T Consensus 3592 ~~ 3593 (3956)
T PRK12467 3592 DA 3593 (3956)
T ss_pred Cc
Confidence 43
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=419.28 Aligned_cols=352 Identities=26% Similarity=0.393 Sum_probs=290.1
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHH--HHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQ--SLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~--~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 138 (458)
...++++++++|||||||.||+|+++|++++.. .......++++.+|+++..+|++|.+++...+.++..|+++++..
T Consensus 173 ~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~ 252 (542)
T PRK06018 173 TFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPG 252 (542)
T ss_pred cCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhhcCceEEccC
Confidence 356788999999999999999999999874322 223345677889999999999999999877778899999988764
Q ss_pred -CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 139 -KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 139 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
.+++..+++.++++++|++.++|+++..+.+....... ..+++|.++++|+++++++++.+++ + ++++++.||+|
T Consensus 253 ~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~--~~~~lr~~~~~G~~l~~~~~~~~~~-~-~~~~~~~YG~t 328 (542)
T PRK06018 253 AKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGL--KLPHLKMVVCGGSAMPRSMIKAFED-M-GVEVRHAWGMT 328 (542)
T ss_pred cCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCC--CcccceEEEEcCCCCCHHHHHHHHH-h-CCCeEeeeccc
Confidence 57889999999999999999999999999876543332 3578999999999999999999999 7 89999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCC-------CCccEEEEeccccch
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS-------SHVGRILTRGAHVML 290 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~-------~~~Gel~v~g~~~~~ 290 (458)
|++.+++.+............ .......++|+|.++++++++|++. +..|||+++|++++.
T Consensus 329 E~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~ 396 (542)
T PRK06018 329 EMSPLGTLAALKPPFSKLPGD------------ARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAA 396 (542)
T ss_pred ccCcccccccCccccccCCch------------hhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEecCCcch
Confidence 998765543221110000000 0000112589999999999998752 256999999999999
Q ss_pred hhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcc
Q 012673 291 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 370 (458)
Q Consensus 291 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 370 (458)
|||+. +...++.++||+|||+++++++|++++.||.+|+|+.+|++|+|.+||+++.+||+|.+++|++++++.+++
T Consensus 397 gy~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~ 473 (542)
T PRK06018 397 AYYRV---DGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDE 473 (542)
T ss_pred hhhcC---cccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCc
Confidence 99983 234556789999999999999999999999999999999999999999999999999999999999988889
Q ss_pred eEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 371 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 371 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
.+.+++++.++. ..+.+++++++++ .++.|++|+.++++ ++||+|++||++|+.|++++.+
T Consensus 474 ~~~~~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~iP~t~~GKi~r~~L~~~~~~ 534 (542)
T PRK06018 474 RPLLIVQLKPGE----------------TATREEILKYMDG-KIAKWWMPDDVAFV-DAIPHTATGKILKTALREQFKD 534 (542)
T ss_pred eeEEEEEeCCCC----------------CCCHHHHHHHHHh-hCccccCCcEEEEe-ccCCCCCcchhhHHHHHHHHhc
Confidence 999999887652 1346789999998 69999999988775 7899999999999999998866
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=423.06 Aligned_cols=341 Identities=30% Similarity=0.471 Sum_probs=286.6
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhc---------CCCC-ceEEeccchhhHhhhH-HHHHHHhc
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG---------YGED-DVYLHTAPLCHIGGLS-SAMAMLMV 130 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~---------~~~~-d~~~~~~p~~~~~g~~-~~~~~l~~ 130 (458)
..++++++++|||||||.||||+++|+++..+.......+. +..+ +++++.+|++|.+++. ..+..+..
T Consensus 204 ~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~ 283 (562)
T PRK12492 204 VGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVS 283 (562)
T ss_pred CCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhc
Confidence 45689999999999999999999999999766655444332 2333 5778899999999984 45667788
Q ss_pred CceEEecC-CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCc
Q 012673 131 GACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAK 209 (458)
Q Consensus 131 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~ 209 (458)
|++.++.. .+++..++..++++++|++.++|+++..+++...... ..++++|.+++||+++++++.+.+.+.+ +++
T Consensus 284 g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~ 360 (562)
T PRK12492 284 GNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKD--LDFSALKLTNSGGTALVKATAERWEQLT-GCT 360 (562)
T ss_pred CceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCccc--ccccceeEEEeccccCCHHHHHHHHHHh-CCc
Confidence 88766654 4688999999999999999999999999887643222 2356899999999999999999999887 799
Q ss_pred eeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEe
Q 012673 210 LISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTR 284 (458)
Q Consensus 210 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~ 284 (458)
+++.||+||++..++.+..... ...+++|+|+++++++++|++ .|+.|||+++
T Consensus 361 ~~~~YG~tE~~~~~~~~~~~~~----------------------~~~~~~G~p~~~~~v~ivd~~~~~~~~g~~Gel~v~ 418 (562)
T PRK12492 361 IVEGYGLTETSPVASTNPYGEL----------------------ARLGTVGIPVPGTALKVIDDDGNELPLGERGELCIK 418 (562)
T ss_pred eeeccCccccCceeeecCCccc----------------------ccCCccceecCCCEEEEECCCCCCCCCCCceEEEEe
Confidence 9999999999865543221100 011258999999999999976 5778999999
Q ss_pred ccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeec
Q 012673 285 GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 364 (458)
Q Consensus 285 g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 364 (458)
|+.++.|||+++..+...++.++||+|||+++++++|++++.||.+|+|+++|++|+|.+||.+|.+||.|.++++++.+
T Consensus 419 g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~ 498 (562)
T PRK12492 419 GPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVP 498 (562)
T ss_pred CCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEecc
Confidence 99999999999998888887789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHH
Q 012673 365 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444 (458)
Q Consensus 365 ~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~ 444 (458)
+...++.+++++++.+. ..+.+++++++++ .++.|++|..+.++ ++||+|++||++|+.|+
T Consensus 499 ~~~~~~~~~~~v~~~~~-----------------~~~~~~i~~~~~~-~l~~~~~P~~i~~~-~~~P~t~~GK~~r~~L~ 559 (562)
T PRK12492 499 DERSGEAVKLFVVARDP-----------------GLSVEELKAYCKE-NFTGYKVPKHIVLR-DSLPMTPVGKILRRELR 559 (562)
T ss_pred CCCCCceEEEEEEeCCC-----------------CCCHHHHHHHHHH-hcccccCCcEEEEe-ccCCCCCCCceeHHHHH
Confidence 88888999999887543 1345789999998 69999999998775 78999999999999998
Q ss_pred HH
Q 012673 445 RE 446 (458)
Q Consensus 445 ~~ 446 (458)
+.
T Consensus 560 ~~ 561 (562)
T PRK12492 560 DI 561 (562)
T ss_pred hh
Confidence 64
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-52 Score=433.64 Aligned_cols=369 Identities=18% Similarity=0.246 Sum_probs=280.4
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhc-CCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG-YGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~-~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
..++|+++|+|||||||.||||+++|+++..+.......++ +.+++++++++|++|.+|+...+.+++.|++++++.+
T Consensus 190 ~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~ 269 (612)
T PRK12476 190 LDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPT 269 (612)
T ss_pred CCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHH
Confidence 46789999999999999999999999999877666666677 7889999999999999999776666667777766653
Q ss_pred -C--ChHHHHHHHH--HhcceEEeechHHHHHHHHHHHh--hccccCCCCceEEEeCCCCCCHHHHHHHHhhCC-----C
Q 012673 140 -F--ESKSALEAVE--QHCVTSLITVPAIMADLATLIRV--KKTWKGRDSVKKILNGGGGLPSELMKEATNSFP-----K 207 (458)
Q Consensus 140 -~--~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-----~ 207 (458)
+ ++..+++.++ ++++++++.+|+++..++..... ......++++| +++||+++++++.+.+.+.|+ .
T Consensus 270 ~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~ 348 (612)
T PRK12476 270 AFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPR 348 (612)
T ss_pred HHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCc
Confidence 3 8899999995 58999999999998887764211 11112357899 999999999999999998872 2
Q ss_pred CceeeccccccCccceeeeeecCCCC----CCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCC
Q 012673 208 AKLISAYGMTETSSSLTFMTLYDPTL----ETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSH 277 (458)
Q Consensus 208 ~~i~~~YG~tE~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~ 277 (458)
..+++.||+||++..++......... ..........-...+.........++|+|+++++++|+|++ .|+
T Consensus 349 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~ 428 (612)
T PRK12476 349 TAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGE 428 (612)
T ss_pred cccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCC
Confidence 45899999999875433221100000 00000000000000001111123478999999999999965 477
Q ss_pred ccEEEEeccccchhhhcCcCCCCcccC------------------CCceEecCceEEEeCCCcEEEEeeccceeeeCcee
Q 012673 278 VGRILTRGAHVMLRYWDQFLAKPSVST------------------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGEN 339 (458)
Q Consensus 278 ~Gel~v~g~~~~~gy~~~~~~~~~~~~------------------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~ 339 (458)
.|||+++|++++.|||++++.|.+.|. +++||+|||+|+++ ||+++++||+||+||++|++
T Consensus 429 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~ 507 (612)
T PRK12476 429 VGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVIDGRN 507 (612)
T ss_pred EEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEECCcc
Confidence 899999999999999999988876653 24699999999985 99999999999999999999
Q ss_pred eCcHHHHHHHhc-CcCcce--EEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccc-
Q 012673 340 VYPEEVEAVLLQ-HPGIIG--IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT- 415 (458)
Q Consensus 340 v~~~~iE~~l~~-~~~v~~--~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~- 415 (458)
|+|.|||++|.+ ||.|.+ +++++++++. ++.+++++++.++.. ..+.++|.+++++ .+.
T Consensus 508 I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~---------------~~~~~~l~~~~~~-~l~~ 570 (612)
T PRK12476 508 HYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTS---------------RADPAPAIDAIRA-AVSR 570 (612)
T ss_pred cCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcc---------------cccHHHHHHHHHH-HHHH
Confidence 999999999985 899999 7788888877 788999998876421 1345677788877 455
Q ss_pred cccC-CeEEEEee-CCCCCCCcccchHHHHHHHHHH
Q 012673 416 GFKA-PRLFVLWR-KPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 416 ~~~~-p~~~~~~~-~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
.|++ |+.++++. ++||+|++||++|+.|++++.+
T Consensus 571 ~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~ 606 (612)
T PRK12476 571 RHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLD 606 (612)
T ss_pred hhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHc
Confidence 5888 57666653 3699999999999999998854
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=417.96 Aligned_cols=338 Identities=20% Similarity=0.304 Sum_probs=283.9
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEecCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~~ 140 (458)
..++++++++|||||||.||+|+++|+++..+.......++++.+|++++.+|++|.+++. .++.++..|+++++.+.+
T Consensus 149 ~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~ 228 (529)
T PRK07867 149 ADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKF 228 (529)
T ss_pred CCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCC
Confidence 4678999999999999999999999999988888788888899999999999999999984 456788999999998889
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.++++++|++.++|+.+..++...+.... ..+++| +++||+++++.. ..+.+.+ ++++++.||+||++
T Consensus 229 ~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~--~~~~lr-~~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~TE~~ 303 (529)
T PRK07867 229 SASGFLPDVRRYGATYANYVGKPLSYVLATPERPDD--ADNPLR-IVYGNEGAPGDI-ARFARRF-GCVVVDGFGSTEGG 303 (529)
T ss_pred CHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccc--cccceE-EEecCCCChHHH-HHHHHHh-CCcEEEeecccccc
Confidence 999999999999999999999999888765432211 235677 456888887764 6677778 78999999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCC------------ccEEE
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSH------------VGRIL 282 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~------------~Gel~ 282 (458)
..++.... . ...++|.|+++ +++++++ .++ .|||+
T Consensus 304 ~~~~~~~~----~---------------------~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~ 356 (529)
T PRK07867 304 VAITRTPD----T---------------------PPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELV 356 (529)
T ss_pred cccccCCC----C---------------------CCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEE
Confidence 54332110 0 11248999988 5666642 234 79999
Q ss_pred E-eccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEE
Q 012673 283 T-RGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361 (458)
Q Consensus 283 v-~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 361 (458)
+ +|++++.||++++..+...+ .++||+|||+++++++|++++.||+||+|+++|++|+|.+||++|.+||+|.+++|+
T Consensus 357 i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~ 435 (529)
T PRK07867 357 NTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVY 435 (529)
T ss_pred EecCCcccccccCChHhhhhhh-cCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEE
Confidence 8 99999999999998877666 478999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhc-ccccccCCeEEEEeeCCCCCCCcccchH
Q 012673 362 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK-NLTGFKAPRLFVLWRKPFPLTSTGKIRR 440 (458)
Q Consensus 362 ~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~p~~~~~~~~~lP~t~~GKv~r 440 (458)
+++++..++++++++++.++. ..+.++++++++++ .|++|++|..++++ +++|+|++||++|
T Consensus 436 g~~~~~~g~~~~a~vv~~~~~----------------~~~~~~l~~~~~~~~~l~~~~~P~~i~~~-~~iP~t~~GKv~r 498 (529)
T PRK07867 436 AVPDPVVGDQVMAALVLAPGA----------------KFDPDAFAEFLAAQPDLGPKQWPSYVRVC-AELPRTATFKVLK 498 (529)
T ss_pred eccCCCCCeeEEEEEEECCCC----------------CCCHHHHHHHHHhhccCCcccCCeEEEEe-eccCCCCCcceeH
Confidence 999999999999999987652 14567888888762 49999999988775 7799999999999
Q ss_pred HHHHHHHHH
Q 012673 441 DEVRREVMS 449 (458)
Q Consensus 441 ~~l~~~~~~ 449 (458)
+.|++....
T Consensus 499 ~~L~~~~~~ 507 (529)
T PRK07867 499 RQLSAEGVD 507 (529)
T ss_pred HHHHHhcCC
Confidence 999997754
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=453.52 Aligned_cols=343 Identities=23% Similarity=0.332 Sum_probs=293.6
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC-
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~- 139 (458)
..++|+++++|||||||.||||+++|+++..+.......+++.++|++++.+|++|.+++ ..++.++..|+++++.+.
T Consensus 790 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~ 869 (1140)
T PRK06814 790 RDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSP 869 (1140)
T ss_pred CCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCc
Confidence 468999999999999999999999999998888888888899999999999999999998 667889999999988774
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
.+...+.+.++++++|++.++|+++..+.+... ..+.+++|.+++||+++++++.+.+.+.+ ++++++.||+||+
T Consensus 870 ~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~----~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~ 944 (1140)
T PRK06814 870 LHYRIIPELIYDTNATILFGTDTFLNGYARYAH----PYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTET 944 (1140)
T ss_pred ccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc----cccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEeccccccc
Confidence 566778899999999999999999988876522 12356899999999999999999999988 7999999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-CCCccEEEEeccccchhhhcCcCC
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-SSHVGRILTRGAHVMLRYWDQFLA 298 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-~~~~Gel~v~g~~~~~gy~~~~~~ 298 (458)
+..++...... ....++|+|+|++++++.+.+ .++.|||+++|++++.||++++..
T Consensus 945 ~~~~~~~~~~~-----------------------~~~~~vG~p~~g~~~~~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~ 1001 (1140)
T PRK06814 945 APVIALNTPMH-----------------------NKAGTVGRLLPGIEYRLEPVPGIDEGGRLFVRGPNVMLGYLRAENP 1001 (1140)
T ss_pred cceEEecCCCC-----------------------CCCCcCCccCCCCeEEEeecCCCCCceEEEEeCCCcchhhcCCCCC
Confidence 87544321100 012259999999999998765 468899999999999999987654
Q ss_pred CCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEe
Q 012673 299 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRL 378 (458)
Q Consensus 299 ~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~ 378 (458)
.......+|||+|||++++|+||++++.||.||+||++|++|+|.|||+++.+|+.+.+++|++++++..++.+++++..
T Consensus 1002 ~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~ 1081 (1140)
T PRK06814 1002 GVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTA 1081 (1140)
T ss_pred CccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcC
Confidence 33333368999999999999999999999999999999999999999999999999999999999999889888776542
Q ss_pred ccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 379 RESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
. + .+.+++.++++++.+++|++|+.++++ +++|+|++||++|++|++...+..+
T Consensus 1082 ~-~------------------~~~~~l~~~~~~~~l~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~~~~~~~ 1135 (1140)
T PRK06814 1082 S-D------------------ATRAAFLAHAKAAGASELMVPAEIITI-DEIPLLGTGKIDYVAVTKLAEEAAA 1135 (1140)
T ss_pred C-C------------------cCHHHHHHHHHHcCCCcccCCcEEEEe-cCcCCCCCCCCcHHHHHHHHHHhhc
Confidence 1 1 346788889987569999999998775 7899999999999999999887764
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=420.21 Aligned_cols=341 Identities=22% Similarity=0.312 Sum_probs=282.8
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHH-HHHHhcCceEEecCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA-MAMLMVGACHVFIPKF 140 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~-~~~l~~G~~~v~~~~~ 140 (458)
..++++++++|||||||.||||+++|+++..........+++..+|++++.+|++|.+++... +.++..|+++++.+.+
T Consensus 147 ~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~ 226 (540)
T PRK13388 147 VDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKF 226 (540)
T ss_pred CCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCC
Confidence 567999999999999999999999999998888777888899999999999999999988654 4678999999988888
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.|+++++|++..+|..+..++....... ....+++.+ + |+++++.....+.+.+ ++++++.||+||++
T Consensus 227 ~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~--~~~~~l~~~-~-G~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~ 301 (540)
T PRK13388 227 SASGFLDDVRRYGATYFNYVGKPLAYILATPERPD--DADNPLRVA-F-GNEASPRDIAEFSRRF-GCQVEDGYGSSEGA 301 (540)
T ss_pred CHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCcc--ccccceEEE-E-CCCCCHHHHHHHHHHh-CCceeccccccccc
Confidence 99999999999999999999999988876532211 122356633 3 6677888889898888 79999999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEE-----------EecCC------CCCccEEEE
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELK-----------VCSDG------SSHVGRILT 283 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~-----------i~d~~------~~~~Gel~v 283 (458)
.++.... .. ...++|+|++++++. ++|++ .+..|||++
T Consensus 302 ~~~~~~~----~~---------------------~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v 356 (540)
T PRK13388 302 VIVVREP----GT---------------------PPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVN 356 (540)
T ss_pred ceeecCC----CC---------------------CCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCcceEEEE
Confidence 6543211 00 112589999887653 22222 245899999
Q ss_pred e-ccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEe
Q 012673 284 R-GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVG 362 (458)
Q Consensus 284 ~-g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 362 (458)
+ |++++.||++++..+...+ .+|||+|||+++++++|+++++||++|+||++|++|+|.+||++|.+||+|.+++|++
T Consensus 357 ~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g 435 (540)
T PRK13388 357 TAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYA 435 (540)
T ss_pred ecCCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEE
Confidence 8 9999999999998887766 4689999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhc-ccccccCCeEEEEeeCCCCCCCcccchHH
Q 012673 363 IANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK-NLTGFKAPRLFVLWRKPFPLTSTGKIRRD 441 (458)
Q Consensus 363 ~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~p~~~~~~~~~lP~t~~GKv~r~ 441 (458)
++++..|+.+++++++.++. ..+.++++++++.+ .|++|++|..++++ ++||+|++||++|+
T Consensus 436 ~~~~~~g~~~~~~v~~~~~~----------------~~~~~~l~~~l~~~~~l~~~~~P~~~~~v-~~iP~t~~GKv~R~ 498 (540)
T PRK13388 436 VPDERVGDQVMAALVLRDGA----------------TFDPDAFAAFLAAQPDLGTKAWPRYVRIA-ADLPSTATNKVLKR 498 (540)
T ss_pred ccCCCCCceeEEEEEECCCC----------------cCCHHHHHHHHHhhccCCcccCCcEEEEe-ccCCCCCcceeeHH
Confidence 99988888888888886652 24467788888652 49999999987765 78999999999999
Q ss_pred HHHHHHHHH
Q 012673 442 EVRREVMSH 450 (458)
Q Consensus 442 ~l~~~~~~~ 450 (458)
.|++.....
T Consensus 499 ~L~~~~~~~ 507 (540)
T PRK13388 499 ELIAQGWAT 507 (540)
T ss_pred hHHHhccCC
Confidence 999876443
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=461.15 Aligned_cols=348 Identities=22% Similarity=0.315 Sum_probs=294.1
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC---
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK--- 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--- 139 (458)
.+++++|++|||||||.||||+++|+++.+...+....+++.++|++++..|++|..++..++.++..|+++++.+.
T Consensus 596 ~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~ 675 (1296)
T PRK10252 596 QPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAH 675 (1296)
T ss_pred CCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhcc
Confidence 57899999999999999999999999999988888889999999999999999999999999999999999999763
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
.++..+++.|+++++|++.++|+++..+++............++|.+++||+++++++.+.+.+.+ ++++++.||+||+
T Consensus 676 ~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~ 754 (1296)
T PRK10252 676 RDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEA 754 (1296)
T ss_pred CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchh
Confidence 688999999999999999999999998887644333222346899999999999999999999887 7899999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhc
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWD 294 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~ 294 (458)
+..++............ .....++|.|++++++.|+|++ .|+.|||+++|++++.||++
T Consensus 755 ~~~~~~~~~~~~~~~~~----------------~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~~Gel~i~g~~~~~GY~~ 818 (1296)
T PRK10252 755 AVDVSWYPAFGEELAAV----------------RGSSVPIGYPVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLG 818 (1296)
T ss_pred hheeeeeeccccccccc----------------CCCCCCcccccCCCEEEEECCCCCCCCCCCceEEEecccccchhhCC
Confidence 87655433221110000 0012358999999999999875 67899999999999999999
Q ss_pred CcCCCCcccC------CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeec----
Q 012673 295 QFLAKPSVST------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA---- 364 (458)
Q Consensus 295 ~~~~~~~~~~------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~---- 364 (458)
+++.|...|. +++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|+.+.
T Consensus 819 ~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~ 898 (1296)
T PRK10252 819 RPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQA 898 (1296)
T ss_pred CcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEecccc
Confidence 9998887663 356999999999999999999999999999999999999999999999999999887642
Q ss_pred CCCCc--ceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHH
Q 012673 365 NARLT--EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDE 442 (458)
Q Consensus 365 ~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~ 442 (458)
+...+ ..+++++++..+. ..+.++|++++++ .|+.|++|..++.+ ++||+|++||++|++
T Consensus 899 ~~~~~~~~~lva~v~~~~~~----------------~~~~~~l~~~l~~-~Lp~~~~P~~~~~~-~~lP~t~~GKidr~~ 960 (1296)
T PRK10252 899 AATGGDARQLVGYLVSQSGL----------------PLDTSALQAQLRE-RLPPHMVPVVLLQL-DQLPLSANGKLDRKA 960 (1296)
T ss_pred ccCCCCccEEEEEEEcCCCC----------------CCCHHHHHHHHHh-hCchhcCCcEEEEe-cCCCCCCCcChhHHh
Confidence 11222 3688999876541 1346789999998 79999999988775 789999999999999
Q ss_pred HHH
Q 012673 443 VRR 445 (458)
Q Consensus 443 l~~ 445 (458)
|++
T Consensus 961 L~~ 963 (1296)
T PRK10252 961 LPL 963 (1296)
T ss_pred cCC
Confidence 975
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-52 Score=502.50 Aligned_cols=342 Identities=24% Similarity=0.331 Sum_probs=299.0
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC--
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP-- 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~-- 138 (458)
...++++||++|||||||.||||+++|+++.....+....+++.++|++++.+|++|..++..++.++..|+++++.+
T Consensus 651 ~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~ 730 (5163)
T PRK12316 651 ELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPG 730 (5163)
T ss_pred CCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCcc
Confidence 457899999999999999999999999999998888888999999999999999999999999999999999999985
Q ss_pred -CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 139 -KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 139 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
.+++..+++.|+++++|++.++|++++.|++.... ...+++|.+++|||++++++.+.+.+.+++++++|.||+|
T Consensus 731 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 806 (5163)
T PRK12316 731 DHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV----ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPT 806 (5163)
T ss_pred ccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc----ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcC
Confidence 37899999999999999999999999998764221 2346899999999999999999998888889999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++..++........ ....++|+|+++++++|+|++ .|+.|||+|+|++++.||
T Consensus 807 E~~~~~~~~~~~~~~---------------------~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY 865 (5163)
T PRK12316 807 EAAIDVTHWTCVEEG---------------------GDSVPIGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGY 865 (5163)
T ss_pred hheeeeeEEeccccc---------------------CCCCCCccccCCCEEEEECCCCCCCCCCCceEEEecccccChhh
Confidence 998654433221100 012259999999999999876 588999999999999999
Q ss_pred hcCcCCCCccc------CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCC
Q 012673 293 WDQFLAKPSVS------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 366 (458)
Q Consensus 293 ~~~~~~~~~~~------~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 366 (458)
+++++.|.+.| ++++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.+
T Consensus 866 l~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~-- 943 (5163)
T PRK12316 866 HGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD-- 943 (5163)
T ss_pred CCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC--
Confidence 99999888766 3467999999999999999999999999999999999999999999999999999999975
Q ss_pred CCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHH
Q 012673 367 RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446 (458)
Q Consensus 367 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~ 446 (458)
++.++|+|++.++. ....+++++++++ .|+.||+|+.++++ ++||+|++||++|+.|.+.
T Consensus 944 --~~~lva~vv~~~~~----------------~~~~~~l~~~l~~-~Lp~y~vP~~i~~v-~~lP~t~~GKidr~~L~~~ 1003 (5163)
T PRK12316 944 --GKQLVGYVVLESEG----------------GDWREALKAHLAA-SLPEYMVPAQWLAL-ERLPLTPNGKLDRKALPAP 1003 (5163)
T ss_pred --CCeEEEEEEccCCC----------------CCCHHHHHHHHHh-hCCCccCCCeEEEH-hhCCCCCCCChhHHhhcCc
Confidence 67899999987641 1346789999998 69999999998875 7899999999999999876
Q ss_pred HHH
Q 012673 447 VMS 449 (458)
Q Consensus 447 ~~~ 449 (458)
...
T Consensus 1004 ~~~ 1006 (5163)
T PRK12316 1004 EAS 1006 (5163)
T ss_pred ccc
Confidence 443
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=416.98 Aligned_cols=341 Identities=24% Similarity=0.409 Sum_probs=280.0
Q ss_pred CceEEEEeccCCCCCccceec--ccHHHHHHH----HHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC
Q 012673 65 EGAVIICFTSGTTGSPKGVVI--SHSALIVQS----LAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP 138 (458)
Q Consensus 65 ~d~a~i~~TSGTTG~PK~v~~--sh~~~~~~~----~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 138 (458)
.++++|+|||||||.||||++ +|.++.... ......+++..+|++++.+|++|.+++...+..+..|+++++.+
T Consensus 148 ~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~ 227 (501)
T PRK13390 148 PCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAK 227 (501)
T ss_pred cccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcC
Confidence 357999999999999999995 455543321 11234567889999999999999998855555677899999988
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..+++.|+++++|++.++|+++..+.............+++|.+++||+++++++.+.+.+.+ +..+++.||+||
T Consensus 228 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE 306 (501)
T PRK13390 228 RFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTE 306 (501)
T ss_pred CcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccc
Confidence 8999999999999999999999999998886533222222346899999999999999999999988 688999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~ 293 (458)
++.++.... .... ...+++|+|+++ .++++|++ .|+.|||+++|++++.||+
T Consensus 307 ~~~~~~~~~---~~~~-------------------~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~ 363 (501)
T PRK13390 307 AHGMTFIDS---PDWL-------------------AHPGSVGRSVLG-DLHICDDDGNELPAGRIGTVYFERDRLPFRYL 363 (501)
T ss_pred cCceEEecc---hhhc-------------------cCCCCcCCcccc-eEEEECCCCCCCCCCCceEEEEecCCcccccc
Confidence 976433211 0000 012258999999 78888865 5789999999999999999
Q ss_pred cCcCCCCcccC--CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcce
Q 012673 294 DQFLAKPSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEM 371 (458)
Q Consensus 294 ~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 371 (458)
++++.+...+. .++|++|||+++++++|++++.||.||+|+++|++|+|.+||++|.+||+|.++++++++++..++.
T Consensus 364 ~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~ 443 (501)
T PRK13390 364 NDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQ 443 (501)
T ss_pred CChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCce
Confidence 99988877654 3689999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHH
Q 012673 372 VVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444 (458)
Q Consensus 372 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~ 444 (458)
+++++++.++.... ....+++.+++++ .|+.|++|..++++ ++||+|++||++|+.||
T Consensus 444 ~~~~v~~~~~~~~~-------------~~~~~~l~~~~~~-~l~~~~~P~~~~~~-~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 444 VKAVIQLVEGIRGS-------------DELARELIDYTRS-RIAHYKAPRSVEFV-DELPRTPTGKLVKGLLR 501 (501)
T ss_pred eEEEEEecCCCCcc-------------hhhHHHHHHHHHH-hcccCCCCcEEEEe-ccCCCCCccceehhhcC
Confidence 99999887542100 0124678899988 69999999998875 78999999999999875
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-52 Score=501.35 Aligned_cols=347 Identities=23% Similarity=0.276 Sum_probs=301.4
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
...++|+|||+|||||||.||||+++|+++.+........+++.++|+++.++|++|..++..++.+|..|+++++.+.
T Consensus 2142 ~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~~ 2221 (5163)
T PRK12316 2142 QLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDE 2221 (5163)
T ss_pred CCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHHHHHHHhCCCEEEeCCcc
Confidence 4578999999999999999999999999999988888889999999999999999999999999999999999977653
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
+++..+++.|+++++|++.++|+++..|......... ..++|.+++|||++++++.+.+.+.+++.++++.||+||
T Consensus 2222 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~---~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 2298 (5163)
T PRK12316 2222 LWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGR---PPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTE 2298 (5163)
T ss_pred cCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcccC---CcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchh
Confidence 6889999999999999999999999999876433222 248999999999999999999999888899999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~ 293 (458)
++..++.......... .....++|+|++++++.|+|++ .|++|||+|+|+++++||+
T Consensus 2299 ~~~~~~~~~~~~~~~~------------------~~~~~~iG~p~~~~~~~i~d~~~~~vp~g~~GEl~i~G~~v~~GY~ 2360 (5163)
T PRK12316 2299 AVVTPLLWKCRPQDPC------------------GAAYVPIGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLARGYL 2360 (5163)
T ss_pred heeeeeeeeccccccc------------------CCCcCCcccccCCCEEEEECCCCCCCCCCCeeEEEecchhhccccc
Confidence 9865543222111000 0011359999999999999876 6889999999999999999
Q ss_pred cCcCCCCcccC-------CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCC
Q 012673 294 DQFLAKPSVST-------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 366 (458)
Q Consensus 294 ~~~~~~~~~~~-------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 366 (458)
++++.|...|. +++||+|||+|++++||+++++||+||+||++|++|+|.|||.+|.++|+|.+++|++.++.
T Consensus 2361 ~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~ 2440 (5163)
T PRK12316 2361 NRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA 2440 (5163)
T ss_pred CChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC
Confidence 99999888763 45799999999999999999999999999999999999999999999999999999998765
Q ss_pred CCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHH
Q 012673 367 RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446 (458)
Q Consensus 367 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~ 446 (458)
.++.++|++++.++. ..+.+++++++++ .||.||+|..++++ ++||+|++||++|+.|++.
T Consensus 2441 -~~~~l~a~v~~~~~~----------------~~~~~~l~~~l~~-~Lp~~~vP~~~~~l-~~lP~t~~GKidR~~L~~~ 2501 (5163)
T PRK12316 2441 -SGKQLVAYVVPDDAA----------------EDLLAELRAWLAA-RLPAYMVPAHWVVL-ERLPLNPNGKLDRKALPKP 2501 (5163)
T ss_pred -CCeEEEEEEEecCCC----------------ccCHHHHHHHHHh-hCchhcCcceEeee-cccCCCCCCccCHhhcCCC
Confidence 678999999987652 2457889999998 79999999998876 7899999999999999765
Q ss_pred H
Q 012673 447 V 447 (458)
Q Consensus 447 ~ 447 (458)
.
T Consensus 2502 ~ 2502 (5163)
T PRK12316 2502 D 2502 (5163)
T ss_pred c
Confidence 4
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=491.00 Aligned_cols=353 Identities=25% Similarity=0.342 Sum_probs=301.7
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
...+++++|++|||||||.||||+++|+++.+........+++.++|+++++.|++|..++..++.++..|+++++.+.
T Consensus 652 ~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lv~~~~~ 731 (3956)
T PRK12467 652 ALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELFGALASGATLHLLPPD 731 (3956)
T ss_pred CCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHHHHHHHhCCCEEEEcCcc
Confidence 4568999999999999999999999999999888888888999999999999999999999999999999999999874
Q ss_pred --CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 140 --FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 140 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
+++..+++.|+++++|++.++|+++..|++..... ...++|.+++|||++++++.+.+.+.+++++++|.||+|
T Consensus 732 ~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 807 (3956)
T PRK12467 732 CARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVA----LPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPT 807 (3956)
T ss_pred ccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhccc----cCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCC
Confidence 68999999999999999999999999998754322 235679999999999999999999988889999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++..++.......... ....++|+|+++++++|+|++ .|+.|||+|+|++++.||
T Consensus 808 E~~~~~~~~~~~~~~~~-------------------~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GY 868 (3956)
T PRK12467 808 ETTVGVSTYELSDEERD-------------------FGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGGAGLARGY 868 (3956)
T ss_pred hhhhheeeEeccccccc-------------------CCCCcccCCcCCCEEEEECCCCCCCCCCCceEEEecccccchhh
Confidence 99876654432211100 011259999999999999875 588999999999999999
Q ss_pred hcCcCCCCcccC-------CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecC
Q 012673 293 WDQFLAKPSVST-------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 365 (458)
Q Consensus 293 ~~~~~~~~~~~~-------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 365 (458)
+++++.|.+.|. +.+||+|||+|++++||.++++||+||+||++|++|+|.|||++|.+||+|.+++|++.++
T Consensus 869 l~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~vki~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~ 948 (3956)
T PRK12467 869 HRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPG 948 (3956)
T ss_pred cCCccccHhhCcCCCCCCCCceeEecCceeEEcCCCcEEEeccccCeEEECCEecCHHHHHHHHHhCCCcceEEEEEEcC
Confidence 999999887762 4569999999999999999999999999999999999999999999999999999998654
Q ss_pred CCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 366 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 366 ~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
. .++.+++++++....... ......+++++++++ .|+.||+|..++++ ++||+|++||++|+.|++
T Consensus 949 ~-~~~~lva~vv~~~~~~~~-----------~~~~~~~~l~~~l~~-~Lp~y~vP~~~~~l-~~lP~t~~GKidR~~L~~ 1014 (3956)
T PRK12467 949 D-AGLQLVAYLVPAAVADGA-----------EHQATRDELKAQLRQ-VLPDYMVPAHLLLL-DSLPLTPNGKLDRKALPK 1014 (3956)
T ss_pred C-CCcEEEEEEEeccccccc-----------ccccCHHHHHHHHHh-hCchhcCCceEeee-cccCCCCCCCcCHhhcCC
Confidence 3 467899999865431100 012346789999998 69999999998875 789999999999999987
Q ss_pred HHHHH
Q 012673 446 EVMSH 450 (458)
Q Consensus 446 ~~~~~ 450 (458)
.....
T Consensus 1015 ~~~~~ 1019 (3956)
T PRK12467 1015 PDASA 1019 (3956)
T ss_pred ccccc
Confidence 65443
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-51 Score=407.82 Aligned_cols=326 Identities=29% Similarity=0.435 Sum_probs=281.4
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~ 140 (458)
...++++++++|||||||.||||+++|+++..........+++.++|+++..+|++|.+|+..++.++..|+++++.+.
T Consensus 131 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~- 209 (458)
T PRK09029 131 AWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDK- 209 (458)
T ss_pred cCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCCh-
Confidence 3467899999999999999999999999999888887888889999999999999999998777788999999988764
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
..+++.+. ++|.+..+|+++..+...... ..++|.+++||+++++.+.+.+.+. ++++++.||+||++
T Consensus 210 --~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~------~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~ 277 (458)
T PRK09029 210 --QPLEQALA--GCTHASLVPTQLWRLLDNRSE------PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMA 277 (458)
T ss_pred --HHHHHHHh--hceeeecChHHHHHHHhcccc------CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccC
Confidence 45667774 789999999999888765322 2479999999999999999988764 79999999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEeccccchhhhcCcCCCC
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 300 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~~~~~gy~~~~~~~~ 300 (458)
...+..... ...++|+|++++++++++ |||+++|+.++.||++++..+.
T Consensus 278 ~~~~~~~~~-------------------------~~~~~G~~~~~~~~~i~~------gel~v~g~~~~~gY~~~~~~~~ 326 (458)
T PRK09029 278 STVCAKRAD-------------------------GLAGVGSPLPGREVKLVD------GEIWLRGASLALGYWRQGQLVP 326 (458)
T ss_pred cceeccCCC-------------------------CCCCCCCCCCCCEEEEeC------CEEEEecCceeeeeecCccccc
Confidence 543321100 011489999999999976 8999999999999999887775
Q ss_pred cccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecc
Q 012673 301 SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRE 380 (458)
Q Consensus 301 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~ 380 (458)
.. ..++||+|||+|+++ ||++++.||++|+||++|++|+|.+||++|.++|+|.+++|++++++..++.+++++++..
T Consensus 327 ~~-~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~ 404 (458)
T PRK09029 327 LV-NDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS 404 (458)
T ss_pred cc-cCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc
Confidence 43 467999999999999 9999999999999999999999999999999999999999999999988999999998763
Q ss_pred ccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 381 SWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
. .+.++|+++|++ .|++|++|..++++ +.+|+|++||++|+.|++.+.+..+
T Consensus 405 ~------------------~~~~~l~~~~~~-~l~~~~~P~~~~~~-~~~p~t~~gKi~r~~L~~~~~~~~~ 456 (458)
T PRK09029 405 E------------------AAVVNLAEWLQD-KLARFQQPVAYYLL-PPELKNGGIKISRQALKEWVAQQLG 456 (458)
T ss_pred c------------------cCHHHHHHHHHh-hchhccCCeEEEEe-cccccCcCCCcCHHHHHHHHHhccC
Confidence 2 346789999998 79999999998775 6699999999999999999887654
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=409.28 Aligned_cols=353 Identities=25% Similarity=0.337 Sum_probs=296.5
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
...++++++++|||||||.||+|.++|+++..........+++..++++++..|++|..++..++.++..|+++++.+.
T Consensus 139 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~ 218 (503)
T PRK04813 139 AVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKD 218 (503)
T ss_pred cCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChh
Confidence 4567899999999999999999999999999888877778888999999999999999998888899999999998875
Q ss_pred --CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 140 --FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 140 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
.++..+++.++++++|++.++|+++..+........ ...+++|.++++|+++++.+.+.+.+.|+++.+++.||+|
T Consensus 219 ~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~--~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~t 296 (503)
T PRK04813 219 MTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNE--EHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPT 296 (503)
T ss_pred hhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCc--ccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccc
Confidence 578999999999999999999999987765432222 2356899999999999999999999999889999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++..++.......... .....++|.+.++++++++|++ .++.|||+++|+.++.||
T Consensus 297 E~~~~~~~~~~~~~~~~------------------~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy 358 (503)
T PRK04813 297 EATVAVTSIEITDEMLD------------------QYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVISGPSVSKGY 358 (503)
T ss_pred hheeEEEEEEecccccc------------------cCCCCcccccCCCCEEEEECCCCCCCCCCCceEEEEecccccccc
Confidence 99765443222111000 0122358999999999999876 477899999999999999
Q ss_pred hcCcCCCCccc---CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCc
Q 012673 293 WDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLT 369 (458)
Q Consensus 293 ~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 369 (458)
|+++..+...+ ++.+||+|||++++ ++|++++.||.+|+|+.+|++|+|.+||+++.++|+|.++++++.++...+
T Consensus 359 ~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 437 (503)
T PRK04813 359 LNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKV 437 (503)
T ss_pred CCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCc
Confidence 99988777654 34569999999999 999999999999999999999999999999999999999999998877777
Q ss_pred ceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHH
Q 012673 370 EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448 (458)
Q Consensus 370 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~ 448 (458)
+.+++++++.++.... .....+++++++++ .++.+++|+.++++ +++|+|++||++|+.|++.++
T Consensus 438 ~~~~~~v~~~~~~~~~------------~~~~~~~l~~~~~~-~l~~~~~P~~i~~~-~~~P~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 438 QYLIAYVVPKEEDFER------------EFELTKAIKKELKE-RLMEYMIPRKFIYR-DSLPLTPNGKIDRKALIEEVN 502 (503)
T ss_pred cEEEEEEEeccccccc------------cchhHHHHHHHHHh-hCccccCCeEEEEe-ccCCCCCCCCCcHHHHHHHhc
Confidence 8899999876541100 01123568889987 69999999998775 789999999999999999875
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-51 Score=417.54 Aligned_cols=346 Identities=30% Similarity=0.499 Sum_probs=289.7
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHHH-hhcCCC-CceEEeccchhhHhhhH-HHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA-IVGYGE-DDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~-~~~~~~-~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~ 139 (458)
.++++++++|||||||.||+|.++|+++..+...... .++... ++++++.+|++|.+++. .++.+++.|+++++.+.
T Consensus 204 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 283 (563)
T PRK06710 204 PENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPK 283 (563)
T ss_pred CCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCC
Confidence 3579999999999999999999999998755433222 234444 45788999999999874 45678899999999888
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.|+++++|++.++|+++..++........ ..+++|.+++||+++++++.+++.+.+ ++++++.||+||+
T Consensus 284 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~ 360 (563)
T PRK06710 284 FDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEY--DISSIRACISGSAPLPVEVQEKFETVT-GGKLVEGYGLTES 360 (563)
T ss_pred CCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccC--ChhhhhheeeCCCcCCHHHHHHHHHhh-CCCEecccccccC
Confidence 9999999999999999999999999988765322222 346899999999999999999999988 7899999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhhh
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy~ 293 (458)
+........... ...+++|.|.+++.+++++++ .|+.|||+++|+.++.||+
T Consensus 361 ~~~~~~~~~~~~----------------------~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~ 418 (563)
T PRK06710 361 SPVTHSNFLWEK----------------------RVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYW 418 (563)
T ss_pred ccccccCccccc----------------------ccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchhhh
Confidence 865432211000 012258999999999999853 5678999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
+++..+...+ .++||+|||+++++++|+++++||.+|+|+++|.+|+|.+||++|.++|.|.+++|++++++..++.++
T Consensus 419 ~~~~~~~~~~-~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 497 (563)
T PRK06710 419 NKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVK 497 (563)
T ss_pred CChHHHhhhc-ccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeE
Confidence 9988877666 478999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
++++..++. ..+.+++++++++ .++.|++|+.+.++ ++||+|++||++|+.|++.+..+-+
T Consensus 498 ~~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~P~~~~~v-~~iP~t~~GKi~r~~L~~~~~~~~~ 558 (563)
T PRK06710 498 AFVVLKEGT----------------ECSEEELNQFARK-YLAAYKVPKVYEFR-DELPKTTVGKILRRVLIEEEKRKNE 558 (563)
T ss_pred EEEEECCCC----------------CCCHHHHHHHHHH-hcccccCCcEEEEc-ccCCCCccchhhHHHHHHHHhhcCc
Confidence 999877652 1346789999988 69999999887764 7899999999999999998876543
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=419.28 Aligned_cols=361 Identities=22% Similarity=0.273 Sum_probs=271.7
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHH-HHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS-AMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~ 139 (458)
...++++++++|||||||.||||+++|+++..+.......++++++|++++.+|++|.+++.. ++.++..|+++++.+.
T Consensus 195 ~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~ 274 (600)
T PRK08279 195 GVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRK 274 (600)
T ss_pred CCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCC
Confidence 346789999999999999999999999999988888888889999999999999999999854 4566788888888888
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.++++++|++.++|++++.++....... ....++|.+ +|+++++++++.+.+.|+...+++.||+||+
T Consensus 275 ~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~--~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~ 350 (600)
T PRK08279 275 FSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT--DRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEG 350 (600)
T ss_pred CCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc--ccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeeccccc
Confidence 999999999999999999999999998876532222 123466654 4788999999999999965679999999998
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEE--EeccccchhhhcCcC
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRIL--TRGAHVMLRYWDQFL 297 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~--v~g~~~~~gy~~~~~ 297 (458)
+...+.. ..... .....+..... ...........|.|+.+..........++.||++ +.|+.++.|| +++.
T Consensus 351 ~~~~~~~-~~~~~--~~g~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~ 423 (600)
T PRK08279 351 NVGFINV-FNFDG--TVGRVPLWLAH---PYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPE 423 (600)
T ss_pred ceeeccc-CCCCc--ccccccccccc---cceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCch
Confidence 7532211 00000 00000000000 0000000000122222211111112357789998 6799999999 7776
Q ss_pred CCCccc------CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCC-cc
Q 012673 298 AKPSVS------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARL-TE 370 (458)
Q Consensus 298 ~~~~~~------~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~-~~ 370 (458)
.+...+ .+++||+|||+|++++||++++.||.||+||++|++|+|.|||+++.+||+|.+++|++++++.. +.
T Consensus 424 ~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~ 503 (600)
T PRK08279 424 ASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGR 503 (600)
T ss_pred hhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCc
Confidence 665432 34689999999999999999999999999999999999999999999999999999999886643 44
Q ss_pred eEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 371 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 371 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
..+++++..++. ..+.++++++|++ .|+.|++|+.++++ ++||+|++||++|+.|++...+.
T Consensus 504 ~~~~~vv~~~~~----------------~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 504 AGMAAIVLADGA----------------EFDLAALAAHLYE-RLPAYAVPLFVRLV-PELETTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred cceeEEEecCCc----------------cCCHHHHHHHHHh-hCccccCCeEEEee-cCCCCCcchhhhHHHHhhcCCCc
Confidence 455666655321 2456889999998 69999999988775 77999999999999999876654
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=408.63 Aligned_cols=351 Identities=23% Similarity=0.351 Sum_probs=291.7
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHH------HHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEe
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQS------LAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVF 136 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~------~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~ 136 (458)
..++.++++|||||||.||+|+++|.++.... ...........++++++.+|++|.+++...+.++..|+++++
T Consensus 138 ~~~~~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 217 (502)
T PRK08276 138 DETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVV 217 (502)
T ss_pred CCCcceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEE
Confidence 45678999999999999999999887654221 111112223467899999999999998777789999999999
Q ss_pred cCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 137 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
.+.+++..+++.++++++|++.++|+++..+++.........+++++|.++++|++++.++++.+.+.+ +..+++.||+
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~ 296 (502)
T PRK08276 218 MEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYAS 296 (502)
T ss_pred cCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhccc
Confidence 988999999999999999999999999999987643322222357899999999999999999999988 7889999999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchh
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLR 291 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~g 291 (458)
||++.+++....... ...+++|.|+ +++++++|++ .|+.|||+++|+.++.|
T Consensus 297 tE~~~~~~~~~~~~~----------------------~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~g 353 (502)
T PRK08276 297 SEGGGVTVITSEDWL----------------------AHPGSVGKAV-LGEVRILDEDGNELPPGEIGTVYFEMDGYPFE 353 (502)
T ss_pred ccccceeEecCcccc----------------------ccCCCcceec-ccEEEEECCCCCCCcCCCceEEEEECCCccch
Confidence 999874433211000 0122589999 8899999865 46789999999999999
Q ss_pred hhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcce
Q 012673 292 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEM 371 (458)
Q Consensus 292 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 371 (458)
|++++..+...+..++||+|||+++++++|++++.||++|+|+++|++|++.+||.+|.++|+|.++++++++++..++.
T Consensus 354 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~ 433 (502)
T PRK08276 354 YHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGER 433 (502)
T ss_pred hcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCce
Confidence 99999888888877799999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHh
Q 012673 372 VVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451 (458)
Q Consensus 372 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 451 (458)
++++++++++.... ....+++++++++ .++.+++|+.++++ +++|+|++||++|+.|++.+..+-
T Consensus 434 ~~~~v~~~~~~~~~-------------~~~~~~i~~~~~~-~l~~~~~p~~i~~~-~~lP~t~~GKi~r~~L~~~~~~~~ 498 (502)
T PRK08276 434 VKAVVQPADGADAG-------------DALAAELIAWLRG-RLAHYKCPRSIDFE-DELPRTPTGKLYKRRLRDRYWEGR 498 (502)
T ss_pred EEEEEEECCCCCCC-------------hhhHHHHHHHHHh-hccCCCCCcEEEEe-cCCCCCcccchhHHHHHHHHHhhh
Confidence 99999987652110 0123578888988 69999999988775 789999999999999999987765
Q ss_pred h
Q 012673 452 K 452 (458)
Q Consensus 452 ~ 452 (458)
+
T Consensus 499 ~ 499 (502)
T PRK08276 499 Q 499 (502)
T ss_pred h
Confidence 4
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-50 Score=407.71 Aligned_cols=346 Identities=25% Similarity=0.410 Sum_probs=291.2
Q ss_pred CCCceEEEEeccCCCCCccceecccHHH---HHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSAL---IVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~---~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
.++++++++|||||||.||+|+++|... ..........+++.+++++++.+|++|..+....+.++..|+++++.+.
T Consensus 150 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 229 (509)
T PRK12406 150 PVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPR 229 (509)
T ss_pred CCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccC
Confidence 5689999999999999999999876543 3333444567788999999999999999887666677889999999888
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.++++++|++.++|+++..|++.........+.+++|.+++||+++++++++.+.+.+ ++.+++.||+||+
T Consensus 230 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~ 308 (509)
T PRK12406 230 FDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTES 308 (509)
T ss_pred CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeecccccc
Confidence 999999999999999999999999999887543322223457899999999999999999999988 7899999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccch-hhh
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVML-RYW 293 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~-gy~ 293 (458)
+.+++.+.. . .. ...+++|.|+++++++++|++ .|+.|||+++|+.++. +|+
T Consensus 309 ~~~~~~~~~-~-~~--------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~~~y~ 366 (509)
T PRK12406 309 GAVTFATSE-D-AL--------------------SHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYH 366 (509)
T ss_pred CceEecCcc-c-cc--------------------ccCCCcCccCCCcEEEEECCCCCCCCCCCceEEEEECCcccccccc
Confidence 875432211 0 00 012258999999999999875 5678999999998765 999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
+++..+...+ .++||+|||+++++++|++++.||.+|+||++|.+|+|.+||++|.++++|.++++++.++...++.++
T Consensus 367 ~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 445 (509)
T PRK12406 367 NKPEKRAEID-RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALM 445 (509)
T ss_pred CCchhccccc-CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeE
Confidence 8887776554 689999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
+++++.++. ..+.+++++++++ .+++|++|..++++ +++|+|++||++|+.|++.+...
T Consensus 446 ~~v~~~~~~----------------~~~~~~l~~~l~~-~l~~~~~P~~i~~~-~~iP~t~~GK~~r~~L~~~~~~~ 504 (509)
T PRK12406 446 AVVEPQPGA----------------TLDEADIRAQLKA-RLAGYKVPKHIEIM-AELPREDSGKIFKRRLRDPYWAN 504 (509)
T ss_pred EEEEECCCC----------------CCCHHHHHHHHHH-hcccCCCCcEEEEe-ccCCCCCccchhHHHHHHHHHhh
Confidence 999886541 1346789999988 69999999988775 78999999999999999887654
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=409.22 Aligned_cols=342 Identities=26% Similarity=0.374 Sum_probs=288.0
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHH-HHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEecCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLA-KIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIPK 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~-~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~ 139 (458)
..++++++++|||||||.||+|+++|+++...... ....++++++|++++.+|++|.+++. .++.++..|+++++.+.
T Consensus 158 ~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~ 237 (508)
T TIGR02262 158 TQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGE 237 (508)
T ss_pred CCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCC
Confidence 45789999999999999999999999999776654 44567889999999999999999984 56678999999888764
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
+++..+++.|+++++|++.++|.++..++....... ....++|.++++|+++++++.+.+.+.| ++++++.||+||
T Consensus 238 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~--~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 314 (508)
T TIGR02262 238 RPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPA--EDQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTE 314 (508)
T ss_pred CCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccc--cccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCccccc
Confidence 689999999999999999999998887765422111 1346899999999999999999999999 789999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~ 293 (458)
++..++.+..... ...++|.|+++++++++|++ .++.|||+++|+.++.||+
T Consensus 315 ~~~~~~~~~~~~~-----------------------~~~~~G~~~~g~~v~i~d~~~~~~~~g~~Gel~i~~~~~~~gY~ 371 (508)
T TIGR02262 315 MLHIFLSNLPGDV-----------------------RYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYW 371 (508)
T ss_pred cCceeecCCccCC-----------------------CCCCcCCCCCCcEEEEECCCCCCCCCCCeeEEEEecCccccccC
Confidence 9865443211100 11258999999999999864 5778999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
+++..+...+ .++||+|||+++++++|+++++||.+|+|+.+|.+|+|.+||++|.++++|.++++++.++...++.++
T Consensus 372 ~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~ 450 (508)
T TIGR02262 372 NNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPK 450 (508)
T ss_pred CCHHHhHhhh-hcCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeE
Confidence 9988877666 468999999999999999999999999999999999999999999999999999999988877788889
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
+++++.++... .....+++++++++ .|+++++|..+.++ +++|+|++||++|+.|++
T Consensus 451 ~~v~~~~~~~~-------------~~~~~~~i~~~~~~-~l~~~~~p~~i~~~-~~iP~t~~gKi~r~~l~~ 507 (508)
T TIGR02262 451 AFIVLRPGQDI-------------DTALETELKEHVKD-RLAPYKYPRWIVFV-DDLPKTATGKIQRFKLRE 507 (508)
T ss_pred EEEEeCCCCcc-------------ccccHHHHHHHHHH-hcccCCCCceEEEe-cCCCCCCCCcEehhhccC
Confidence 99987654211 01235678899998 69999999987765 789999999999999875
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-51 Score=423.14 Aligned_cols=362 Identities=20% Similarity=0.180 Sum_probs=276.0
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCC---CceEEeccchhhHhhhH-HHHHHHhcCceEEec
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGE---DDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFI 137 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~---~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~ 137 (458)
..++|+++|+|||||||.||||+++|+++..+.......+.... .++++..+|++|.+|+. .++.++..|+++++.
T Consensus 217 ~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~ 296 (624)
T PRK12582 217 ITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYID 296 (624)
T ss_pred CCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEc
Confidence 46789999999999999999999999999877665555445444 58999999999999974 456788999999887
Q ss_pred CC-CCh---HHHHHHHHHhcceEEeechHHHHHHHHHHHhhcc--ccCCCCceEEEeCCCCCCHHHHHHHHhhC----C-
Q 012673 138 PK-FES---KSALEAVEQHCVTSLITVPAIMADLATLIRVKKT--WKGRDSVKKILNGGGGLPSELMKEATNSF----P- 206 (458)
Q Consensus 138 ~~-~~~---~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~~~lr~i~~~G~~l~~~~~~~~~~~~----~- 206 (458)
+. +++ ..+++.++++++|+++++|.++..|++....... ...++++|.+++||+++++++.+.+.+.+ +
T Consensus 297 ~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~ 376 (624)
T PRK12582 297 DGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGH 376 (624)
T ss_pred CCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCC
Confidence 63 343 3457778899999999999999988765432211 11246899999999999999999998852 2
Q ss_pred CCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEecc
Q 012673 207 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGA 286 (458)
Q Consensus 207 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~ 286 (458)
++++++.||+||++.+++..... . ...+++|+|++++++++++ .|+.|||+++|+
T Consensus 377 ~~~l~~~YG~TE~~~~~~~~~~~-~----------------------~~~~svG~p~pg~~v~i~~--~G~~GEl~vrg~ 431 (624)
T PRK12582 377 RIPFYTGYGATETAPTTTGTHWD-T----------------------ERVGLIGLPLPGVELKLAP--VGDKYEVRVKGP 431 (624)
T ss_pred CceEEeccccccccceeecccCC-C----------------------CCCCCCCcCCCCcEEEEcc--CCCceEEEEECC
Confidence 36899999999997654321110 0 0123689999999999975 478899999999
Q ss_pred ccchhhhcCcCCCCcccCCCceEecCceEEE-e---CCCcEEEEeeccceee-eCceeeCcHHHH--HHHhcCcCcceEE
Q 012673 287 HVMLRYWDQFLAKPSVSTGEVWLDTGDIGSI-D---DGGNVWLVGRRNGRIK-SGGENVYPEEVE--AVLLQHPGIIGIV 359 (458)
Q Consensus 287 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~-~---~~g~l~~~GR~~d~i~-~~G~~v~~~~iE--~~l~~~~~v~~~~ 359 (458)
+++.|||++++.+.+.++.+|||+|||+|++ + ++|+++++||+||+|+ .+|++|+|.+|| .++.+||.|.+++
T Consensus 432 ~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~ 511 (624)
T PRK12582 432 NVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAV 511 (624)
T ss_pred cccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEE
Confidence 9999999999999988888999999999998 4 5699999999999999 589999999885 6888999999999
Q ss_pred EEeecCCCCcceEEEEEEeccccc--cccccccccchhhhhhhhHHHHHHHhhhc------cccccc-CCeEEEEeeCCC
Q 012673 360 VVGIANARLTEMVVACVRLRESWQ--WSESNCDQSSKNKELLLSSEVLRQHCREK------NLTGFK-APRLFVLWRKPF 430 (458)
Q Consensus 360 v~~~~~~~~~~~~~a~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~l~~~~-~p~~~~~~~~~l 430 (458)
|+|++++..+ ++|++..... +..... .......+.+++.+++++. .++.+. +|+++.++ +++
T Consensus 512 VvG~~~~~~g----~lv~p~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~ 582 (624)
T PRK12582 512 VAGQDRAFIG----LLAWPNPAACRQLAGDPD----AAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLM-TEP 582 (624)
T ss_pred EEcCCCCcEE----EEEecCHHHHHHHHhcCC----CCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEe-CCC
Confidence 9998776544 4555433210 000000 0001112334455555441 244554 99998876 445
Q ss_pred C------CCCcccchHHHHHHHHHHHhhcCCCC
Q 012673 431 P------LTSTGKIRRDEVRREVMSHLKSLPSN 457 (458)
Q Consensus 431 P------~t~~GKv~r~~l~~~~~~~~~~~~~~ 457 (458)
| +|++||++|+.+.+.|++.|++||++
T Consensus 583 ~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~~ 615 (624)
T PRK12582 583 PSIDAGEITDKGYINQRAVLERRAALVERLYAE 615 (624)
T ss_pred CCccCCcCCccccccHHHHHHHHHHHHHHHhcC
Confidence 4 77899999999999999999999985
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=411.20 Aligned_cols=336 Identities=25% Similarity=0.366 Sum_probs=281.2
Q ss_pred CCceEEEEeccCCCCCccceecccHHHH--HHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCC
Q 012673 64 PEGAVIICFTSGTTGSPKGVVISHSALI--VQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFE 141 (458)
Q Consensus 64 ~~d~a~i~~TSGTTG~PK~v~~sh~~~~--~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~ 141 (458)
+++.++++|||||||.||+|+++|.... .........+++..+|+++..+|++|.+|+..++.++..|++++....++
T Consensus 173 ~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~ 252 (516)
T PRK13383 173 AAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFD 252 (516)
T ss_pred CCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECCCCC
Confidence 4567899999999999999999997432 11222334567889999999999999999987888899999999988899
Q ss_pred hHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCcc
Q 012673 142 SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSS 221 (458)
Q Consensus 142 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 221 (458)
+..+++.++++++|.+.++|.++..+....+.......++++|.+++||+++++++++.+.+.| ++.+++.||+||++.
T Consensus 253 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~ 331 (516)
T PRK13383 253 AEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTEVGI 331 (516)
T ss_pred HHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc-Cchhhhccccccccc
Confidence 9999999999999999999999999887543222112356899999999999999999999999 788999999999985
Q ss_pred ceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhcCc
Q 012673 222 SLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWDQF 296 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~~~ 296 (458)
.+...... . . ....++|.|+++++++++|++ .++.|||+++|+.++.||++.+
T Consensus 332 ~~~~~~~~-~-~--------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~ 389 (516)
T PRK13383 332 GALATPAD-L-R--------------------DAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGG 389 (516)
T ss_pred ceeccccc-c-c--------------------cCCCcccCCCCCcEEEEECCCCCCCCCCCceEEEEecCcccccccCCc
Confidence 44322110 0 0 012358999999999999865 4678999999999999999775
Q ss_pred CCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEE
Q 012673 297 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACV 376 (458)
Q Consensus 297 ~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v 376 (458)
... ..+|||+|||+++++++|+++++||++|+||++|++|+|.+||.+|.+||.|.+++++++++...++.+.+++
T Consensus 390 ~~~----~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v 465 (516)
T PRK13383 390 GKA----VVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFV 465 (516)
T ss_pred hhh----eecCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEE
Confidence 321 2478999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred EeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHH
Q 012673 377 RLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444 (458)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~ 444 (458)
++.++. ..+.+++++++++ .++.|++|..+.++ ++||+|++||++|+.|+
T Consensus 466 ~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 466 VLHPGS----------------GVDAAQLRDYLKD-RVSRFEQPRDINIV-SSIPRNPTGKVLRKELP 515 (516)
T ss_pred EECCCC----------------CCCHHHHHHHHHH-hcccCCCCcEEEEe-CCCCCCCCCcCcHHHhC
Confidence 987542 1345679999998 69999999988775 78999999999999874
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-50 Score=407.25 Aligned_cols=346 Identities=24% Similarity=0.350 Sum_probs=287.3
Q ss_pred CCceEEEEeccCCCCCccceec--ccHHHHH---HHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC
Q 012673 64 PEGAVIICFTSGTTGSPKGVVI--SHSALIV---QSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP 138 (458)
Q Consensus 64 ~~d~a~i~~TSGTTG~PK~v~~--sh~~~~~---~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 138 (458)
.++.++++|||||||.||||++ +|.++.. ........+++..++++++.+|++|.+++...+.++..|+++++.+
T Consensus 153 ~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~ 232 (511)
T PRK13391 153 ESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVME 232 (511)
T ss_pred cccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECC
Confidence 4567899999999999999995 4665432 2333455667888999999999999999887788999999999998
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..+++.++++++|++.++|+++..+.+...........+++|.+++||+++++++.+.+++.| +..+++.||+||
T Consensus 233 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE 311 (511)
T PRK13391 233 HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATE 311 (511)
T ss_pred CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHc-CCceeeeecccc
Confidence 8999999999999999999999999998876543222222356899999999999999999999988 688999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~ 293 (458)
++.+....... .. ...+++|.|+++ .++++|++ .|+.|||+++|+ ++.|||
T Consensus 312 ~~~~~~~~~~~--~~--------------------~~~~~vG~~~~g-~~~i~d~~~~~~~~g~~Gel~~~g~-~~~gy~ 367 (511)
T PRK13391 312 GLGFTACDSEE--WL--------------------AHPGTVGRAMFG-DLHILDDDGAELPPGEPGTIWFEGG-RPFEYL 367 (511)
T ss_pred ccceEEecCcc--cc--------------------ccCCCcCCcccc-eEEEECCCCCCCCCCCceEEEEecC-cceEEc
Confidence 98654321100 00 012358999998 68888765 467899999999 888999
Q ss_pred cCcCCCCcccCCC-ceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 294 DQFLAKPSVSTGE-VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 294 ~~~~~~~~~~~~~-~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
+++..+...+..+ +||+|||+++++++|++++.||.+|+++++|.+|+|.+||++|.+||.|.++++++++++..++.+
T Consensus 368 ~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~ 447 (511)
T PRK13391 368 NDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEV 447 (511)
T ss_pred CChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCcee
Confidence 9988877766544 999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
++++++.++.... ....+++++++++ .++.|++|+.+.++ +++|+|++||++|+.|++.+..
T Consensus 448 ~~~~~~~~~~~~~-------------~~~~~~l~~~~~~-~l~~~~~P~~i~~~-~~~P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 448 KAVVQPVDGVDPG-------------PALAAELIAFCRQ-RLSRQKCPRSIDFE-DELPRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred EEEEEECCCCCcc-------------cchHHHHHHHHHh-hcccCcCCcEEEEe-ecCCCCCccceeHHHHHHHhhc
Confidence 9999876542110 1124689999998 69999999988875 7799999999999999998864
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=402.24 Aligned_cols=330 Identities=35% Similarity=0.528 Sum_probs=283.7
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~ 140 (458)
....+++++++|||||||.||+|+++|+++..........++++++|++++.+|++|.+++..++.++..|+++++.+.+
T Consensus 107 ~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~ 186 (436)
T TIGR01923 107 SFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF 186 (436)
T ss_pred cCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH
Confidence 34578999999999999999999999999988888888888999999999999999999998888999999999998765
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
+ .+++.|+++++|++.++|+++..+++.... .+++|.++++|+++++++.+.+++. ++.+++.||+||++
T Consensus 187 ~--~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~------~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~ 256 (436)
T TIGR01923 187 N--QLLEMIANERVTHISLVPTQLNRLLDEGGH------NENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETC 256 (436)
T ss_pred H--HHHHHHHHhCCeEEEeHHHHHHHHHhCcCC------CCceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccc
Confidence 3 889999999999999999999988775321 1579999999999999999988764 89999999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEeccccchhhhcCcCCCC
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 300 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~~~~~gy~~~~~~~~ 300 (458)
...+........ ... ++|.|++++++++..++.++.|||+++|+.++.||++++..+.
T Consensus 257 ~~~~~~~~~~~~---------------------~~~-~~G~~~~~~~~~i~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~ 314 (436)
T TIGR01923 257 SQVTTATPEMLH---------------------ARP-DVGRPLAGREIKIKVDNKEGHGEIMVKGANLMKGYLYQGELTP 314 (436)
T ss_pred hhccCcCccccc---------------------ccc-CCCccCCCcEEEEEeCCCCCceEEEEECCccchhhCCChhhhh
Confidence 654432211100 011 3899999999999555556899999999999999999776665
Q ss_pred cccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecc
Q 012673 301 SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRE 380 (458)
Q Consensus 301 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~ 380 (458)
..+ .++||+|||++++++||++++.||.+|+||++|++|++.+||.+|.+++.|.++++++.++...++.+.+++++.+
T Consensus 315 ~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 393 (436)
T TIGR01923 315 AFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSES 393 (436)
T ss_pred hhh-cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECC
Confidence 543 5799999999999999999999999999999999999999999999999999999999888777888888888765
Q ss_pred ccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHH
Q 012673 381 SWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 443 (458)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l 443 (458)
+ .+.+++.+++++ .++.|++|..++++ ++||+|++||++|+.|
T Consensus 394 ~------------------~~~~~l~~~l~~-~l~~~~~p~~i~~~-~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 394 D------------------ISQAKLIAYLTE-KLAKYKVPIAFEKL-DELPYNASGKILRNQL 436 (436)
T ss_pred C------------------CCHHHHHHHHHH-hhhCCCCCeEEEEe-cCCCCCCCCceecccC
Confidence 3 346788899988 69999999988775 7899999999999865
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=412.63 Aligned_cols=342 Identities=26% Similarity=0.429 Sum_probs=285.7
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhc----CC---CCceEEeccchhhHhhh-HHHHHHHhcCc
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG----YG---EDDVYLHTAPLCHIGGL-SSAMAMLMVGA 132 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~----~~---~~d~~~~~~p~~~~~g~-~~~~~~l~~G~ 132 (458)
...++++++++|||||||.||+|+++|.++..+.......+. .. ....+++.+|++|.+++ ...+.++..|+
T Consensus 200 ~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~ 279 (557)
T PRK07059 200 KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGG 279 (557)
T ss_pred CCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcc
Confidence 456889999999999999999999999998765543322221 11 23567888999999887 45667888898
Q ss_pred eEEecCC-CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCcee
Q 012673 133 CHVFIPK-FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLI 211 (458)
Q Consensus 133 ~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~ 211 (458)
+.++.+. .++..+++.++++++|.+.++|.++..+........ ...+++|.++.||+++++.+.+.+.+.+ +++++
T Consensus 280 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~--~~~~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~ 356 (557)
T PRK07059 280 RNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDK--LDFSKLIVANGGGMAVQRPVAERWLEMT-GCPIT 356 (557)
T ss_pred eEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCc--CCchhheEEEeccccCCHHHHHHHHHHh-CCCee
Confidence 8777664 578899999999999999999999999887643222 2346899999999999999999999888 79999
Q ss_pred eccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEecc
Q 012673 212 SAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGA 286 (458)
Q Consensus 212 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~ 286 (458)
+.||+||++.+++.+..... . ...++|.|+++++++++|++ .|+.|||+++|+
T Consensus 357 ~~YG~tE~~~~~~~~~~~~~--~--------------------~~~~vG~p~~g~~v~i~d~~~~~~~~g~~Gel~v~g~ 414 (557)
T PRK07059 357 EGYGLSETSPVATCNPVDAT--E--------------------FSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGP 414 (557)
T ss_pred eccccccccchhhcCCCCCC--C--------------------cCCcccCccCCcEEEEECCCCCCCCCCCceEEEEeCC
Confidence 99999999876543321100 0 11258999999999999875 477899999999
Q ss_pred ccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCC
Q 012673 287 HVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 366 (458)
Q Consensus 287 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 366 (458)
.++.||+++++.+...+..+|||+|||+++++++|+++++||++|+|+++|++|+|.+||+++.++++|.+++++++++.
T Consensus 415 ~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~ 494 (557)
T PRK07059 415 QVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDE 494 (557)
T ss_pred ccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccC
Confidence 99999999998888777788999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHH
Q 012673 367 RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446 (458)
Q Consensus 367 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~ 446 (458)
..++.++++++..+. ..+.+++++++++ .++.+++|..+.++ +++|+|++||++|+.|+++
T Consensus 495 ~~ge~~~~~v~~~~~-----------------~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 495 HSGEAVKLFVVKKDP-----------------ALTEEDVKAFCKE-RLTNYKRPKFVEFR-TELPKTNVGKILRRELRDG 555 (557)
T ss_pred CCCeeEEEEEEeCCC-----------------CCCHHHHHHHHHH-hcccccCCcEEEEe-ccCCCCcccceeHHHHHhh
Confidence 888999988886532 1345788899988 69999999987765 7899999999999999865
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-50 Score=411.53 Aligned_cols=349 Identities=30% Similarity=0.444 Sum_probs=286.7
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHH-hhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA-IVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 139 (458)
..++++++++|||||||.||+|+++|+++..+...... ...+..+|++++++|++|++|+ ..++.++..|+++++.++
T Consensus 206 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~ 285 (567)
T PRK06178 206 PALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLAR 285 (567)
T ss_pred CCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCC
Confidence 46789999999999999999999999998766544333 3567889999999999999998 467888999999999999
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEe--CCCCCCHHHHHHHHhhCCCCcee-ecccc
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILN--GGGGLPSELMKEATNSFPKAKLI-SAYGM 216 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~--~G~~l~~~~~~~~~~~~~~~~i~-~~YG~ 216 (458)
+++..++..|+++++|.+.++|..+..+.+...... ..++++|.+.. .++.+++++.+.+++.+ +..++ +.||+
T Consensus 286 ~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~YG~ 362 (567)
T PRK06178 286 WDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAE--YDLSSLRQVRVVSFVKKLNPDYRQRWRALT-GSVLAEAAWGM 362 (567)
T ss_pred CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCC--CCcchheeeeeccccccCCHHHHHHHHHHh-CCccccccccc
Confidence 999999999999999999999999988876532222 23356776544 45899999999999988 45555 57999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccch
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVML 290 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~ 290 (458)
||++..+........... .......++|.|+++++++++|++ .|++|||+++|++++.
T Consensus 363 tE~~~~~~~~~~~~~~~~----------------~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~ 426 (567)
T PRK06178 363 TETHTCDTFTAGFQDDDF----------------DLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLK 426 (567)
T ss_pred ccccccceeccccccCcc----------------ccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccc
Confidence 998754333211100000 000123368999999999999843 5778999999999999
Q ss_pred hhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcc
Q 012673 291 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 370 (458)
Q Consensus 291 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 370 (458)
|||+++..+...+ .+|||+|||+++++++|+++++||++|+|+.+|++|+|.+||+++.++++|.++++++.+++..++
T Consensus 427 gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~ 505 (567)
T PRK06178 427 GYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQ 505 (567)
T ss_pred cccCChhhhhhcc-cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCc
Confidence 9999988777665 468999999999999999999999999999999999999999999999999999999999888888
Q ss_pred eEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 371 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 371 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
.+++++++.++. ..+.+++++++++ .++.|++|. +++ .+++|+|++||++|+.|++++++
T Consensus 506 ~~~~~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~-i~~-v~~iP~t~~GKv~r~~l~~~~~~ 565 (567)
T PRK06178 506 VPVAFVQLKPGA----------------DLTAAALQAWCRE-NMAVYKVPE-IRI-VDALPMTATGKVRKQDLQALAEE 565 (567)
T ss_pred ceEEEEEeCCCC----------------cCCHHHHHHHHHh-cCcccCCce-EEE-eccCCCCCccceeHHHHHHHHHh
Confidence 999999887542 1356789999998 699999996 555 47899999999999999998865
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=414.01 Aligned_cols=341 Identities=28% Similarity=0.498 Sum_probs=286.1
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhc----CCCC-ceEEeccchhhHhhhH-HHHHHHhcCceEE
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG----YGED-DVYLHTAPLCHIGGLS-SAMAMLMVGACHV 135 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~----~~~~-d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v 135 (458)
..++++++++|||||||.||+|+++|.++..+.......++ +..+ +++++.+|++|.+++. ..+.++..|++.+
T Consensus 205 ~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 284 (560)
T PRK08751 205 IEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNH 284 (560)
T ss_pred CCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEE
Confidence 45789999999999999999999999999877665555443 3344 5678889999999874 4566677788776
Q ss_pred ecC-CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecc
Q 012673 136 FIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAY 214 (458)
Q Consensus 136 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 214 (458)
+.. .+++..+++.++++++|++.++|.++..+.+...... ..++++|.+++||+++++++.+.+++.+ ++.+++.|
T Consensus 285 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~~~~~Y 361 (560)
T PRK08751 285 LISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQ--IDFSSLKMTLGGGMAVQRSVAERWKQVT-GLTLVEAY 361 (560)
T ss_pred EecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCC--cchhhheeeeeCCCCCCHHHHHHHHHHh-CCeEEEee
Confidence 654 5789999999999999999999999998887533222 2356899999999999999999999988 78999999
Q ss_pred ccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccc
Q 012673 215 GMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVM 289 (458)
Q Consensus 215 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~ 289 (458)
|+||++..++.+..... ....++|.|+++++++++|++ .++.|||+++|+.++
T Consensus 362 G~tE~~~~~~~~~~~~~----------------------~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~~~~~~ 419 (560)
T PRK08751 362 GLTETSPAACINPLTLK----------------------EYNGSIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVM 419 (560)
T ss_pred ccccCCCceeccccccc----------------------ccCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCccc
Confidence 99999865443221100 012258999999999999865 567899999999999
Q ss_pred hhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCc
Q 012673 290 LRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLT 369 (458)
Q Consensus 290 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 369 (458)
.||++++..+...+..+|||+|||+++++++|++++.||.+|+|+++|++|+|.+||++|.++++|.+++|+++++...+
T Consensus 420 ~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g 499 (560)
T PRK08751 420 KGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSG 499 (560)
T ss_pred hhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCC
Confidence 99999999888888788999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHH
Q 012673 370 EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446 (458)
Q Consensus 370 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~ 446 (458)
+.++++++.... ..+.+++++++++ .+++|++|+.++++ ++||+|++||++|+.|++.
T Consensus 500 e~~~~~v~~~~~-----------------~~~~~~l~~~~~~-~l~~~~~P~~v~~v-~~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 500 EIVKVVIVKKDP-----------------ALTAEDVKAHARA-NLTGYKQPRIIEFR-KELPKTNVGKILRRELRDA 557 (560)
T ss_pred ceEEEEEEcCCC-----------------CCCHHHHHHHHHH-hhhhccCCeEEEEh-hhCCCCccccccHHHHHHh
Confidence 888888775432 1346789999998 69999999987765 7899999999999999876
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=406.70 Aligned_cols=358 Identities=25% Similarity=0.387 Sum_probs=282.6
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCCh
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFES 142 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~ 142 (458)
.++++++++|||||||.||||+++|+++..........+++..++++++.+|++|.+++...+.....+++.+++..+++
T Consensus 193 ~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~ 272 (567)
T PLN02479 193 DEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTA 272 (567)
T ss_pred CcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCH
Confidence 34577889999999999999999999987666555567788899999999999999998655544334455555677899
Q ss_pred HHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccc
Q 012673 143 KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSS 222 (458)
Q Consensus 143 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 222 (458)
..+++.++++++|+++++|+++..|.+....... ...++++.++++|+++++++.+.+.+. ++++++.||+||+++.
T Consensus 273 ~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~-~~~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~ 349 (567)
T PLN02479 273 KAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETI-LPLPRVVHVMTAGAAPPPSVLFAMSEK--GFRVTHTYGLSETYGP 349 (567)
T ss_pred HHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccc-ccccceeEEEEcCCCCCHHHHHHHHhc--CCceeccccccccccc
Confidence 9999999999999999999999998876432221 134688999999999999999998875 6899999999998654
Q ss_pred eeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCce-EEEecCC-------C-CCccEEEEeccccchhhh
Q 012673 223 LTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVE-LKVCSDG-------S-SHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~-~~i~d~~-------~-~~~Gel~v~g~~~~~gy~ 293 (458)
++.+.........+.. .......+.|.+.++.+ ++++|++ . +++|||+++|++++.|||
T Consensus 350 ~~~~~~~~~~~~~~~~------------~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~ 417 (567)
T PLN02479 350 STVCAWKPEWDSLPPE------------EQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYL 417 (567)
T ss_pred ccceeccccccccCcc------------cccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhh
Confidence 4332211100000000 00001124677777765 6777632 1 257999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
+++..+...+ .++||+|||+++++++|+++++||.+|+|+.+|++|+|.+||.+|.+||.|.+++|++.+++..++.++
T Consensus 418 ~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 496 (567)
T PLN02479 418 KNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPC 496 (567)
T ss_pred cCcccccchh-cCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeE
Confidence 9999988877 478999999999999999999999999999999999999999999999999999999998888888999
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
+++++.++.... ......++|.+++++ .|+.|++|+.+++ +++|+|++||++|+.|++++...
T Consensus 497 ~~v~~~~~~~~~-----------~~~~~~~~l~~~~~~-~l~~~~~P~~~~~--~~iP~t~~gKv~r~~L~~~~~~~ 559 (567)
T PLN02479 497 AFVTLKPGVDKS-----------DEAALAEDIMKFCRE-RLPAYWVPKSVVF--GPLPKTATGKIQKHVLRAKAKEM 559 (567)
T ss_pred EEEEecCccccc-----------chhhhHHHHHHHHHh-hcccccCCceEEe--ccCCCCCccCeeHHHHHHHHHhh
Confidence 999987652110 011335689999988 6999999998664 56999999999999999986653
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=484.85 Aligned_cols=346 Identities=23% Similarity=0.335 Sum_probs=297.6
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
...|+++||++|||||||.||||+++|+++.+...+....++++++|+++.+.++.|..++..++.++..|+++++.+.
T Consensus 3865 ~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~ 3944 (4334)
T PRK05691 3865 YSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNA 3944 (4334)
T ss_pred CCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCcc
Confidence 4578999999999999999999999999999988888888999999999999999999999999999999999998874
Q ss_pred --CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 140 --FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 140 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
.++..+++.++++++|++.++|+++..++.... ...++||.+++|||++++++.+.|.+.+++++++|.||+|
T Consensus 3945 ~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~-----~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 4019 (4334)
T PRK05691 3945 IAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDR-----QALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPA 4019 (4334)
T ss_pred ccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhcc-----ccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCc
Confidence 678999999999999999999999998875321 1246899999999999999999999988899999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++..++.......... ....++|+|++++.+.++|+. .|.+|||+|+|+++++||
T Consensus 4020 E~t~~~~~~~~~~~~~~-------------------~~~~~iG~p~~~~~~~v~d~~~~~~p~g~~GEL~i~G~~v~~GY 4080 (4334)
T PRK05691 4020 ECSDDVAFFRVDLASTR-------------------GSYLPIGSPTDNNRLYLLDEALELVPLGAVGELCVAGTGVGRGY 4080 (4334)
T ss_pred cceeEEEEEEccccccc-------------------CCcCCCCCccCCCEEEEECCCCCCCCCCCceEEEEecccccccc
Confidence 99876654433211100 011248999999999999876 688999999999999999
Q ss_pred hcCcCCCCcccC-------CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecC
Q 012673 293 WDQFLAKPSVST-------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 365 (458)
Q Consensus 293 ~~~~~~~~~~~~-------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 365 (458)
+++++.|.+.|. +++||||||++++++||+++++||+|++||++|++|++.|||++|.++|+|.+++|+.. +
T Consensus 4081 ~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~-~ 4159 (4334)
T PRK05691 4081 VGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQ-E 4159 (4334)
T ss_pred cCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEe-c
Confidence 999999988772 46899999999999999999999999999999999999999999999999999888654 3
Q ss_pred CCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 366 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 366 ~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
...++.++|+++....... .....+++++++++ .||.||+|..++.+ ++||+|++||++|++|++
T Consensus 4160 ~~~~~~l~a~~~~~~~~~~-------------~~~~~~~l~~~l~~-~Lp~ymvP~~~~~~-~~lP~t~~GKidr~~L~~ 4224 (4334)
T PRK05691 4160 GVNGKHLVGYLVPHQTVLA-------------QGALLERIKQRLRA-ELPDYMVPLHWLWL-DRLPLNANGKLDRKALPA 4224 (4334)
T ss_pred CCCCcEEEEEEeCCccccc-------------chHHHHHHHHHHHh-hCChhhcCcceeec-ccCCCCCCCcccHhhcCC
Confidence 4557789999987654210 11235678999988 79999999988775 789999999999999976
Q ss_pred H
Q 012673 446 E 446 (458)
Q Consensus 446 ~ 446 (458)
.
T Consensus 4225 ~ 4225 (4334)
T PRK05691 4225 L 4225 (4334)
T ss_pred C
Confidence 4
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=390.59 Aligned_cols=310 Identities=25% Similarity=0.365 Sum_probs=268.6
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~ 140 (458)
..++++++++|||||||.||+|+++|+++..+.......+++..+|+.+..+|++|.+|+ ..++.++..|+++++.+.+
T Consensus 98 ~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~ 177 (414)
T PRK08308 98 YLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNK 177 (414)
T ss_pred CCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCC
Confidence 467899999999999999999999999998888877788888899999999999999997 5678899999999999889
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.++++++|+++++|.++..+.+.... ..+++.++++|+++++++.+.+++. ..++++.||+||++
T Consensus 178 ~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~------~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~ 249 (414)
T PRK08308 178 NPKFALNILRNTPQHILYAVPLMLHILGRLLPG------TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAG 249 (414)
T ss_pred CHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc------cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccC
Confidence 999999999999999999999999998765321 1368899999999999999999887 46899999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEeccccchhhhcCcCCCC
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 300 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~~~~~gy~~~~~~~~ 300 (458)
.+..... . . ...++|+|+|++++++.++ .++.||+++++
T Consensus 250 ~~~~~~~---~--~--------------------~~~~~G~p~~~~~~~~~~~-~~~~gel~v~~--------------- 288 (414)
T PRK08308 250 CVSICPD---M--K--------------------SHLDLGNPLPHVSVSAGSD-ENAPEEIVVKM--------------- 288 (414)
T ss_pred CeeecCC---C--C--------------------CCCccCccCCCeEEEEecC-CCCCceEEEEc---------------
Confidence 5332110 0 0 1125899999999988653 56789999975
Q ss_pred cccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecc
Q 012673 301 SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRE 380 (458)
Q Consensus 301 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~ 380 (458)
.++||+|||++++++||+++++||.+|+||++|++|+|.+||+++.++|+|.+++|++.+++..++.++++++...
T Consensus 289 ----~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~ 364 (414)
T PRK08308 289 ----GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE 364 (414)
T ss_pred ----CCceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC
Confidence 2579999999999999999999999999999999999999999999999999999999999888899999888654
Q ss_pred ccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHH
Q 012673 381 SWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444 (458)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~ 444 (458)
. .+.+++++++++ .++.|++|..++++ ++||+|++||++|+.|+
T Consensus 365 ~------------------~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 365 E------------------IDPVQLREWCIQ-HLAPYQVPHEIESV-TEIPKNANGKVSRKLLE 408 (414)
T ss_pred C------------------CCHHHHHHHHHH-hCccccCCcEEEEe-ccCCCCCCcCeehhhhh
Confidence 3 456789999998 69999999987765 78999999999999543
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=399.77 Aligned_cols=340 Identities=26% Similarity=0.382 Sum_probs=277.6
Q ss_pred CceEEEEeccCCCCCccceecccHHHHHHHHHHHHh---------hcC------CCCceEEeccchhhHhhhHHHHHHHh
Q 012673 65 EGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI---------VGY------GEDDVYLHTAPLCHIGGLSSAMAMLM 129 (458)
Q Consensus 65 ~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~---------~~~------~~~d~~~~~~p~~~~~g~~~~~~~l~ 129 (458)
.|.++++|||||||.||+|+++|+++.......... ..+ ..+++++..+|++|.+++..++.++.
T Consensus 163 ~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~ 242 (533)
T PRK07798 163 PDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALF 242 (533)
T ss_pred CCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHHHHHHHh
Confidence 345789999999999999999999987544332211 111 56789999999999999988899999
Q ss_pred cCceEEecC--CCChHHHHHHHHHhcceEEeechHHHHH-HHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCC
Q 012673 130 VGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMAD-LATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP 206 (458)
Q Consensus 130 ~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~-l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~ 206 (458)
.|+++++.+ .+++..+++.++++++|.+.++|..+.. +..... .......+++|.+++||+++++++.+++.+.|+
T Consensus 243 ~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~ 321 (533)
T PRK07798 243 SGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-ARGPYDLSSLFAIASGGALFSPSVKEALLELLP 321 (533)
T ss_pred cCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-ccccCCCCceEEEEECCCCCCHHHHHHHHHHcC
Confidence 999999998 7899999999999999999999876643 444333 111224568999999999999999999999998
Q ss_pred CCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEec--ccCCCceEEEecCC-----CCCc-
Q 012673 207 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVG--KPAPHVELKVCSDG-----SSHV- 278 (458)
Q Consensus 207 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~p~~~~~~~i~d~~-----~~~~- 278 (458)
++.+++.||+||++.+......... ...| .+.++..+++++++ .|+.
T Consensus 322 ~~~~~~~YG~tE~~~~~~~~~~~~~-------------------------~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~ 376 (533)
T PRK07798 322 NVVLTDSIGSSETGFGGSGTVAKGA-------------------------VHTGGPRFTIGPRTVVLDEDGNPVEPGSGE 376 (533)
T ss_pred CCeEEeeecccccccccccCCCCCC-------------------------ccCCCCccCCCceEEEECCCCCCCCCCCCC
Confidence 8999999999999654432211000 0133 67788889998876 3444
Q ss_pred -cEEEEeccccchhhhcCcCCCCcccC---CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcC
Q 012673 279 -GRILTRGAHVMLRYWDQFLAKPSVST---GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 354 (458)
Q Consensus 279 -Gel~v~g~~~~~gy~~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 354 (458)
|+++ +++.++.|||+++..+...+. +.+||+|||+++++++|+++++||.+|+|+.+|++|+|.+||+++.++|+
T Consensus 377 ~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~ 455 (533)
T PRK07798 377 IGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPD 455 (533)
T ss_pred eeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCcc
Confidence 5555 567899999999887776653 45799999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCC
Q 012673 355 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTS 434 (458)
Q Consensus 355 v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~ 434 (458)
|.++++++.+++..++.+++++++.++. ..+.+++++++++ .|+.|++|+.++++ +++|+|+
T Consensus 456 v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------------~~~~~~l~~~l~~-~l~~~~~P~~i~~~-~~iP~t~ 517 (533)
T PRK07798 456 VADALVVGVPDERWGQEVVAVVQLREGA----------------RPDLAELRAHCRS-SLAGYKVPRAIWFV-DEVQRSP 517 (533)
T ss_pred ceeEEEEeccCcccCceEEEEEEECCCC----------------CCCHHHHHHHHhh-hcccCCCCeEEEEc-ccCCCCC
Confidence 9999999999888889999999887542 1356789999988 69999999987775 7899999
Q ss_pred cccchHHHHHHHHHH
Q 012673 435 TGKIRRDEVRREVMS 449 (458)
Q Consensus 435 ~GKv~r~~l~~~~~~ 449 (458)
+||++|+.|+++.++
T Consensus 518 ~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 518 AGKADYRWAKEQAAE 532 (533)
T ss_pred cchhhHHHHhhhhcc
Confidence 999999999998875
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=478.84 Aligned_cols=342 Identities=23% Similarity=0.320 Sum_probs=295.8
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
...+++++|++|||||||.||||+++|+++.....+....+++.++|++++..|++|..++..++.++..|+++++.+.
T Consensus 1269 ~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~ 1348 (4334)
T PRK05691 1269 HLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPG 1348 (4334)
T ss_pred CCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 3467999999999999999999999999999888888888999999999999999999999999999999999999763
Q ss_pred --CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 140 --FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 140 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
.++..+++.|+++++|++.++|+++..+...... ...+++|.+++||+++++++.+.+.+.+++++++|.||+|
T Consensus 1349 ~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~----~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 1424 (4334)
T PRK05691 1349 EHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA----AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPT 1424 (4334)
T ss_pred ccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc----ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcC
Confidence 7889999999999999999999999988764221 2356899999999999999999999999889999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++..++........ . ...++|+|++++.++|+|++ .|++|||+|+|+++++||
T Consensus 1425 E~~~~~~~~~~~~~~-~--------------------~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GY 1483 (4334)
T PRK05691 1425 ETAINVTHWQCQAED-G--------------------ERSPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGY 1483 (4334)
T ss_pred hheeeeeeeeccccc-C--------------------CCCcccceeCCCEEEEECCCCCCCCCCCceEEEecCcccchhh
Confidence 998655432211110 0 11258999999999999876 588999999999999999
Q ss_pred hcCcCCCCcccC-------CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecC
Q 012673 293 WDQFLAKPSVST-------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 365 (458)
Q Consensus 293 ~~~~~~~~~~~~-------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 365 (458)
+++++.|.+.|. +.+||+|||+|++++||+++++||+|++||++|++|+|.|||.+|.+||+|.+++|+...+
T Consensus 1484 l~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~ 1563 (4334)
T PRK05691 1484 LGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREG 1563 (4334)
T ss_pred cCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeC
Confidence 999998887763 3469999999999999999999999999999999999999999999999999999996554
Q ss_pred CCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 366 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 366 ~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
..++.++++++...+. ....+++++++++ .|+.||+|..++.+ ++||+|++||++|+.|++
T Consensus 1564 -~~~~~lva~~~~~~~~----------------~~~~~~l~~~l~~-~Lp~y~vP~~~~~~-~~lP~t~~GKidr~~L~~ 1624 (4334)
T PRK05691 1564 -AAGAQLVGYYTGEAGQ----------------EAEAERLKAALAA-ELPEYMVPAQLIRL-DQMPLGPSGKLDRRALPE 1624 (4334)
T ss_pred -CCCCEEEEEEEeCCCC----------------CCCHHHHHHHHHH-hCccccCCcEEEEc-cccCCCCCCCcChhhcCc
Confidence 4467899998876541 1345689999998 79999999998875 789999999999999975
Q ss_pred H
Q 012673 446 E 446 (458)
Q Consensus 446 ~ 446 (458)
.
T Consensus 1625 ~ 1625 (4334)
T PRK05691 1625 P 1625 (4334)
T ss_pred c
Confidence 4
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=403.48 Aligned_cols=340 Identities=30% Similarity=0.446 Sum_probs=281.5
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhc------CCCCceEEeccchhhHhhhH-HHHHHHhcCce
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG------YGEDDVYLHTAPLCHIGGLS-SAMAMLMVGAC 133 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~------~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~ 133 (458)
...++++++++|||||||.||+|+++|.++...... ...++ ....+++++.+|++|.+++. .++.++..|++
T Consensus 188 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~ 266 (541)
T TIGR03205 188 AVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSI-YDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDL 266 (541)
T ss_pred CCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHH-HHhhcccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCE
Confidence 346789999999999999999999999998654332 12221 23347899999999998874 56788999999
Q ss_pred EEecCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeec
Q 012673 134 HVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISA 213 (458)
Q Consensus 134 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~ 213 (458)
+++...+++..+++.|+++++|++.++|+++..+++...... ...+++|.+++||+++++++.+++.+.+ ++++++.
T Consensus 267 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~i~~gg~~~~~~~~~~~~~~~-~~~~~~~ 343 (541)
T TIGR03205 267 ISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEK--RDLSSLATIGSGGAPLPVEVANFFERKT-GLKLKSG 343 (541)
T ss_pred EEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccc--cCccccceEEEccccCCHHHHHHHHHHh-CCCeecc
Confidence 988888899999999999999999999999988876422111 2346899999999999999999998888 7899999
Q ss_pred cccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEec--CC-----CCCccEEEEecc
Q 012673 214 YGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS--DG-----SSHVGRILTRGA 286 (458)
Q Consensus 214 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d--~~-----~~~~Gel~v~g~ 286 (458)
||+||++..++.+...... ...++|.|++++.+++.+ ++ .++.|||+++|+
T Consensus 344 YG~TE~~~~~~~~~~~~~~----------------------~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~ 401 (541)
T TIGR03205 344 WGMTETCSPGTGHPPEGPD----------------------KPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGP 401 (541)
T ss_pred cccccCCcccccCCCCCCC----------------------CCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecC
Confidence 9999998655433211100 112589999999888764 22 467899999999
Q ss_pred ccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCC
Q 012673 287 HVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 366 (458)
Q Consensus 287 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 366 (458)
+++.||++++..+.+.+. ++||+|||+++++++|+++++||.+|+||++|++|+|.+||+++.+|++|.+++|++++++
T Consensus 402 ~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~ 480 (541)
T TIGR03205 402 NVTRGYWNRPEESAEAFV-GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQ 480 (541)
T ss_pred CccccccCChhhhHhhhc-cCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCc
Confidence 999999999888877664 6799999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHH
Q 012673 367 RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444 (458)
Q Consensus 367 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~ 444 (458)
..++.+++++++..+.. ..+.+++++++++ .|++|++|+.++++ ++||+|++||++|+.|+
T Consensus 481 ~~~~~~~~~v~~~~~~~---------------~~~~~~l~~~~~~-~l~~~~~P~~i~~~-~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 481 YRGEAAKAFVKLRPGAK---------------PFSLDELRAFLAG-KLGKHELPVAVEFV-DELPRTPVGKLSRHELR 541 (541)
T ss_pred ccCceEEEEEEECCCCC---------------cCCHHHHHHHHHh-hcccccCCcEEEEe-ccCCCCcccceeHhhcC
Confidence 88889999998875421 1345788999988 69999999988775 78999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=397.79 Aligned_cols=353 Identities=28% Similarity=0.411 Sum_probs=281.0
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCCh
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFES 142 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~ 142 (458)
+.+++++++|||||||.||||+++|+++..+.......+++..+++.++.+|++|.+++...+...+.|++.++...+++
T Consensus 180 ~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~ 259 (545)
T PRK08162 180 DEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCLRKVDP 259 (545)
T ss_pred CCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEeCCCCH
Confidence 34689999999999999999999999987666555666778889999999999999998665555567777777778999
Q ss_pred HHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccc
Q 012673 143 KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSS 222 (458)
Q Consensus 143 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 222 (458)
..+++.++++++|++.++|+++..|++....... ...+.+.++++|+++++++.+.+.+. ++++++.||+||++..
T Consensus 260 ~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~ 335 (545)
T PRK08162 260 KLIFDLIREHGVTHYCGAPIVLSALINAPAEWRA--GIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVYGLTETYGP 335 (545)
T ss_pred HHHHHHHHHcCCeEEEechHHHHHHHhCcccccc--CCccceEEEECCCCCCHHHHHHHHHh--CCceeecccccccCcc
Confidence 9999999999999999999999999875432221 12356677899999999999988764 7899999999998654
Q ss_pred eeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCC-ceEEEecCCC-------C-CccEEEEeccccchhhh
Q 012673 223 LTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPH-VELKVCSDGS-------S-HVGRILTRGAHVMLRYW 293 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~i~d~~~-------~-~~Gel~v~g~~~~~gy~ 293 (458)
+..+.........+.. .......+.|.+.+. ..++++|++. | +.|||+++|+.++.||+
T Consensus 336 ~~~~~~~~~~~~~~~~------------~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~ 403 (545)
T PRK08162 336 ATVCAWQPEWDALPLD------------ERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYL 403 (545)
T ss_pred eeecccccccccCCcc------------chhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhc
Confidence 4433211100000000 000001135655543 3567777531 2 36999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
+++..+...+ .++||+|||+++++++|+++++||.+|+|+++|++|+|.+||++|.++|+|.+++|++.+++..++.++
T Consensus 404 ~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~ 482 (545)
T PRK08162 404 KNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPC 482 (545)
T ss_pred CChhhhHHHh-hCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEE
Confidence 9998887776 468999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHh
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 451 (458)
+++++.++. ..+.+++++++++ .|+.|++|+.+++ .++|+|++||++|+.|++++.+..
T Consensus 483 ~~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~P~~~~~--~~iP~t~~gK~~r~~l~~~~~~l~ 541 (545)
T PRK08162 483 AFVELKDGA----------------SATEEEIIAHCRE-HLAGFKVPKAVVF--GELPKTSTGKIQKFVLREQAKSLK 541 (545)
T ss_pred EEEEeCCCC----------------CCCHHHHHHHHHH-hcccccCCcEEEe--cccCCCCCcCCcHHHHHHHHhhhh
Confidence 999887642 1346789999998 6999999998764 469999999999999999876543
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=401.73 Aligned_cols=346 Identities=27% Similarity=0.459 Sum_probs=288.7
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhc---CCCCceEEeccchhhHhhh-HHHHHHHhcCceEEec
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG---YGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFI 137 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~---~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~ 137 (458)
..++++++++|||||||.||+|.++|.++..+.......+. ...++.++..+|++|.+++ ...+..+..|+++++.
T Consensus 203 ~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~ 282 (560)
T PRK08974 203 LVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLI 282 (560)
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEe
Confidence 46789999999999999999999999999876554433332 2346778899999999887 4566778889887665
Q ss_pred C-CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 138 P-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 138 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
. ..++..+++.++++++|++.++|+++..|........ ...+++|.+++||+++++.+.+.+++.+ ++++++.||+
T Consensus 283 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~ 359 (560)
T PRK08974 283 TNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQE--LDFSSLKLSVGGGMAVQQAVAERWVKLT-GQYLLEGYGL 359 (560)
T ss_pred cCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCccc--CCccceeEEEecCccCCHHHHHHHHHHh-CCcEEeeecc
Confidence 4 4678889999999999999999999999987543222 2346899999999999999999999987 8999999999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchh
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLR 291 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~g 291 (458)
||++..++.+...... ...++|.|++++++++++++ .|+.|||+++|+.++.|
T Consensus 360 tE~~~~~~~~~~~~~~----------------------~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~g 417 (560)
T PRK08974 360 TECSPLVSVNPYDLDY----------------------YSGSIGLPVPSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLG 417 (560)
T ss_pred cccCceeeccCCCCcc----------------------cCCccccCcCCCEEEEECCCCCCCCCCCceEEEEecCCcchh
Confidence 9998765543221100 12258999999999999875 56789999999999999
Q ss_pred hhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcce
Q 012673 292 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEM 371 (458)
Q Consensus 292 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 371 (458)
|++++..+...+ .++||+|||+++++++|+++++||.+|+|+++|.+|+|.+||++|.++++|.+++|++.+++..++.
T Consensus 418 y~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~ 496 (560)
T PRK08974 418 YWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEA 496 (560)
T ss_pred hcCChhhhhhhh-hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceE
Confidence 999988877666 6799999999999999999999999999999999999999999999999999999999999888888
Q ss_pred EEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHh
Q 012673 372 VVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451 (458)
Q Consensus 372 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 451 (458)
++++++..+. ..+.+++++++.+ .+++|++|..+.++ ++||+|++||++|+.|+++..++.
T Consensus 497 ~~~~v~~~~~-----------------~~~~~~l~~~l~~-~l~~~~~P~~~~~~-~~lP~t~~GK~~r~~l~~~~~~~~ 557 (560)
T PRK08974 497 VKIFVVKKDP-----------------SLTEEELITHCRR-HLTGYKVPKLVEFR-DELPKSNVGKILRRELRDEARAKV 557 (560)
T ss_pred EEEEEECCCC-----------------CCCHHHHHHHHHh-hcccccCCcEEEEh-hhCCCCCCCcEeHHHHHHHHHhhh
Confidence 8888775432 1235678889987 69999999987775 789999999999999999888765
Q ss_pred h
Q 012673 452 K 452 (458)
Q Consensus 452 ~ 452 (458)
.
T Consensus 558 ~ 558 (560)
T PRK08974 558 D 558 (560)
T ss_pred c
Confidence 3
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=402.57 Aligned_cols=370 Identities=21% Similarity=0.299 Sum_probs=282.3
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHH-hhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEecCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA-IVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIPK 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~ 139 (458)
..++++++++|||||||.||||+++|+++..+...... .+++.++|++++++|++|.+|+. .++.++..|+++++.+.
T Consensus 173 ~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~ 252 (579)
T PRK09192 173 PTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPT 252 (579)
T ss_pred CCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCH
Confidence 46789999999999999999999999999888777776 78899999999999999999985 45677888998877652
Q ss_pred ----CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhc-cccCCCCceEEEeCCCCCCHHHHHHHHhhCCC-----Cc
Q 012673 140 ----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK-TWKGRDSVKKILNGGGGLPSELMKEATNSFPK-----AK 209 (458)
Q Consensus 140 ----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-----~~ 209 (458)
.++..+++.+.++++++++..|..+..+........ ....++++|.+++||+++++.+.+.+.+.++. ..
T Consensus 253 ~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~ 332 (579)
T PRK09192 253 RDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKA 332 (579)
T ss_pred HHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhh
Confidence 368889999999999977765554444443321111 11235689999999999999999999887731 35
Q ss_pred eeeccccccCccceeeeeecCCCCC---CCCCCC-ccccccC-CCCCCCCCceEecccCCCceEEEecCC-----CCCcc
Q 012673 210 LISAYGMTETSSSLTFMTLYDPTLE---TPGQLP-QAFGNVT-PNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVG 279 (458)
Q Consensus 210 i~~~YG~tE~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~G 279 (458)
+++.||+||++..++.......... ...... ....... ..........++|.|+|+++++++|++ .++.|
T Consensus 333 ~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~G 412 (579)
T PRK09192 333 FMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERVVG 412 (579)
T ss_pred cccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECCCCCCCCCCCEE
Confidence 8999999999765443221100000 000000 0000000 000001123468999999999999875 46789
Q ss_pred EEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcc--e
Q 012673 280 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII--G 357 (458)
Q Consensus 280 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~--~ 357 (458)
||+++|+.++.|||++ ..+...+..++||+|||++++ ++|+++++||++|+||++|++|+|.+||++|.+||+|. +
T Consensus 413 el~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~ 490 (579)
T PRK09192 413 HICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGD 490 (579)
T ss_pred EEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCc
Confidence 9999999999999999 666777778899999999999 99999999999999999999999999999999999998 8
Q ss_pred EEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhccc-ccccCCeEEEEee-CCCCCCCc
Q 012673 358 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL-TGFKAPRLFVLWR-KPFPLTST 435 (458)
Q Consensus 358 ~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-~~~~~p~~~~~~~-~~lP~t~~ 435 (458)
+++++++++. ++.++++++..++. ..+.++|++++++ .+ +.+++|..++++. ++||+|++
T Consensus 491 ~~v~~~~~~~-~~~~~~~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~~~~~i~~~~~~~lP~t~~ 552 (579)
T PRK09192 491 AAAFSIAQEN-GEKIVLLVQCRISD----------------EERRGQLIHALAA-LVRSEFGVEAAVELVPPHSLPRTSS 552 (579)
T ss_pred EEEEEeccCC-CeeEEEEEEecCCC----------------hHHHHHHHHHHHH-HHHHHhCCCceEEEeCCCCcCCCCC
Confidence 9999998875 55788888765431 1345778888887 45 4688888776653 47999999
Q ss_pred ccchHHHHHHHHHHHh
Q 012673 436 GKIRRDEVRREVMSHL 451 (458)
Q Consensus 436 GKv~r~~l~~~~~~~~ 451 (458)
||++|+.|++.+....
T Consensus 553 GKv~R~~l~~~~~~~~ 568 (579)
T PRK09192 553 GKLSRAKAKKRYLSGA 568 (579)
T ss_pred cchhHHHHHHHHHcCC
Confidence 9999999999987643
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=417.68 Aligned_cols=330 Identities=20% Similarity=0.307 Sum_probs=261.0
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHH-HHhcCceEEecCCCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMA-MLMVGACHVFIPKFE 141 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~-~l~~G~~~v~~~~~~ 141 (458)
.++|+++|+|| ||||.||++.++|.++..........+++.++|++++.+|++|++++...+. .+..|+++++.++++
T Consensus 604 ~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~ 682 (994)
T PRK07868 604 LARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLD 682 (994)
T ss_pred CCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCC
Confidence 36899999999 5777777777788776554445555678889999999999999999976554 455555566667799
Q ss_pred hHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCcc
Q 012673 142 SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSS 221 (458)
Q Consensus 142 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 221 (458)
+..+++.|+++++|+++++|+++..|++..... ....+++|.++ |+.+++++++.+.+.|+++++++.||+||++.
T Consensus 683 ~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~--~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~ 758 (994)
T PRK07868 683 PDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFV--LHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQA 758 (994)
T ss_pred HHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCc--cCCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeecccccc
Confidence 999999999999999999999999988753211 12346788766 44599999999999997789999999999875
Q ss_pred ceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCc-eEEEe-----------cC-------CCCCccEEE
Q 012673 222 SLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHV-ELKVC-----------SD-------GSSHVGRIL 282 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~-----------d~-------~~~~~Gel~ 282 (458)
..+.. .. .+.+++|+|++++ ++++. ++ ..|+.|||+
T Consensus 759 ~~~~~----~~---------------------~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~ 813 (994)
T PRK07868 759 VLANV----SG---------------------AKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLL 813 (994)
T ss_pred ccccc----CC---------------------CCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEE
Confidence 32210 00 0123699999997 56553 22 147889999
Q ss_pred EeccccchhhhcCcCCC--Cccc-CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEE
Q 012673 283 TRGAHVMLRYWDQFLAK--PSVS-TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 359 (458)
Q Consensus 283 v~g~~~~~gy~~~~~~~--~~~~-~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 359 (458)
++++..+ ++..+ ...+ .++|||+|||+|++|+||+|+++||+||+||++|++|+|.|||++|.+||+|.+++
T Consensus 814 ~~~~~~~-----~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aa 888 (994)
T PRK07868 814 ARARGPI-----DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAV 888 (994)
T ss_pred EecCCCC-----ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEE
Confidence 9987542 22221 1122 25899999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccch
Q 012673 360 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR 439 (458)
Q Consensus 360 v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~ 439 (458)
|++++++. ++.++++|+++++. ..+.++|+++|++ ++.||+|+.++++ ++||+|++||++
T Consensus 889 Vvg~~d~~-~~~~~a~Vv~~~~~----------------~~~~~~L~~~l~~--l~~y~vP~~i~~v-~~lP~T~sGKi~ 948 (994)
T PRK07868 889 TYGVEVGG-RQLAVAAVTLRPGA----------------AITAADLTEALAS--LPVGLGPDIVHVV-PEIPLSATYRPT 948 (994)
T ss_pred EEeecCCC-CceEEEEEEeCCCC----------------cCCHHHHHHHHHh--CCCCcCCeEEEEe-CCCCCCccccEe
Confidence 99998875 67889999987652 2456789999974 8999999988775 789999999999
Q ss_pred HHHHHHHH
Q 012673 440 RDEVRREV 447 (458)
Q Consensus 440 r~~l~~~~ 447 (458)
|++|+++-
T Consensus 949 r~~L~~~~ 956 (994)
T PRK07868 949 VSALRAAG 956 (994)
T ss_pred hHHHHhcC
Confidence 99998763
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=388.26 Aligned_cols=373 Identities=20% Similarity=0.299 Sum_probs=264.0
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHh-hc-----CCCCceEEeccchhhHhhh-HHHHHHHhcCceE
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI-VG-----YGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACH 134 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~-~~-----~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~ 134 (458)
..++|+++++|||||||.||||+++|+++..+....... +. ...++++++.+|++|.+|+ ..++.+++.|+++
T Consensus 157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~ 236 (578)
T PRK05850 157 RDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPA 236 (578)
T ss_pred CCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCcE
Confidence 467899999999999999999999999998766554432 22 3567899999999999998 4578899999999
Q ss_pred EecCC----CChHHHHHHHHHhcceEEeechHHHHHHHHH-HHhhc-cccCCCCceEEEeCCCCCCHHHHHHHHhhCC--
Q 012673 135 VFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATL-IRVKK-TWKGRDSVKKILNGGGGLPSELMKEATNSFP-- 206 (458)
Q Consensus 135 v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~-~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-- 206 (458)
++.+. .++..+++.++++++++. .+|.++..+... ..... .....+++|.+++||+++++++.+++.+.|+
T Consensus 237 ~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~ 315 (578)
T PRK05850 237 VLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLKRFADRFAPF 315 (578)
T ss_pred EEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhc
Confidence 98874 278999999999999854 566655443322 11111 1123468999999999999999999988773
Q ss_pred ---CCceeeccccccCccceeeeeecCCCCC-CCCCCCccccccCCCCC-CCCCceEecccCCCceEEEecCC------C
Q 012673 207 ---KAKLISAYGMTETSSSLTFMTLYDPTLE-TPGQLPQAFGNVTPNSV-HQPQGVCVGKPAPHVELKVCSDG------S 275 (458)
Q Consensus 207 ---~~~i~~~YG~tE~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~------~ 275 (458)
+..+++.||+||++..+........... .........+....... ........|.|. +.+++++|++ .
T Consensus 316 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~ 394 (578)
T PRK05850 316 NLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPA 394 (578)
T ss_pred CcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCC
Confidence 3478999999998754332111100000 00000000000000000 000112356664 5788888854 4
Q ss_pred CCccEEEEeccccchhhhcCcCCCCcccC-----------CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHH
Q 012673 276 SHVGRILTRGAHVMLRYWDQFLAKPSVST-----------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEE 344 (458)
Q Consensus 276 ~~~Gel~v~g~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ 344 (458)
|+.|||+++|++++.|||++++.+.+.|. .++||+|||+|+++ +|+++++||++|+||++|++|+|.|
T Consensus 395 g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~e 473 (578)
T PRK05850 395 GTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDD 473 (578)
T ss_pred CCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHHH
Confidence 78899999999999999999988887663 25799999999998 8999999999999999999999999
Q ss_pred HHHHHhcCcCcceEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhccccc--ccCCeE
Q 012673 345 VEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG--FKAPRL 422 (458)
Q Consensus 345 iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~--~~~p~~ 422 (458)
||++|.+|+.+. +++++++++ .++.++++++++++..... +......++++.+.. .+.. ...|..
T Consensus 474 IE~~l~~~~~~~-~~v~~v~~~-~~~~~~a~v~~~~~~~~~~----------~~~~~~~~l~~~v~~-~l~~~~~~~~~~ 540 (578)
T PRK05850 474 IEATIQEITGGR-VAAISVPDD-GTEKLVAIIELKKRGDSDE----------EAMDRLRTVKREVTS-AISKSHGLSVAD 540 (578)
T ss_pred HHHHHHHhcCCc-EEEEEecCC-CceEEEEEEEeccccCcch----------hhhhhHHHHHHHHHH-HHHHHhCCCceE
Confidence 999999999854 778888876 6889999999876522110 000123445555443 2332 224555
Q ss_pred EEEee-CCCCCCCcccchHHHHHHHHHHH
Q 012673 423 FVLWR-KPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 423 ~~~~~-~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
++++. +.||+|++||++|+.|++++.+.
T Consensus 541 ~~~~~~~~iP~t~~GKi~R~~l~~~~~~~ 569 (578)
T PRK05850 541 LVLVAPGSIPITTSGKIRRAACVEQYRQD 569 (578)
T ss_pred EEEeCCCCcCCCCCchHHHHHHHHHHHcC
Confidence 55543 47999999999999999998653
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=378.10 Aligned_cols=370 Identities=24% Similarity=0.299 Sum_probs=274.0
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCC-ceEEeccchhhHhhhH-HHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGED-DVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~-d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~ 138 (458)
...++++++++|||||||.||+|+++|+++..+.......+++..+ |++++.+|++|..++. .++.++..|+++++++
T Consensus 148 ~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~ 227 (545)
T PRK07768 148 ETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVT 227 (545)
T ss_pred CCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeC
Confidence 3467999999999999999999999999998887777777888876 8999999999999985 4567899999988876
Q ss_pred C----CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhc--cccCCCCceEEEeCCCCCCHHHHHHHHhh---C--CC
Q 012673 139 K----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK--TWKGRDSVKKILNGGGGLPSELMKEATNS---F--PK 207 (458)
Q Consensus 139 ~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~~~lr~i~~~G~~l~~~~~~~~~~~---~--~~ 207 (458)
. .++..+++.+++++++++.+.|.++..+........ ....++++|.++++|+++++++.+.+.+. | +.
T Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~ 307 (545)
T PRK07768 228 PMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRP 307 (545)
T ss_pred HHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCc
Confidence 4 367888999999999998888887776665442221 11345789999999999999999988874 4 22
Q ss_pred CceeeccccccCccceeeeeecCCCCCCCC----CCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCc
Q 012673 208 AKLISAYGMTETSSSLTFMTLYDPTLETPG----QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV 278 (458)
Q Consensus 208 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~ 278 (458)
..+++.||+||++..++..... ....... ...........+........++|+|+++++++++|++ .++.
T Consensus 308 ~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~~ 386 (545)
T PRK07768 308 EAILPAYGMAEATLAVSFSPCG-AGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDGQVLPPRGV 386 (545)
T ss_pred ccccccccccccceEEEccCCC-CCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEECCCCCCCCCCCE
Confidence 3599999999998654432211 0000000 0000000000111112234579999999999999865 5678
Q ss_pred cEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceE
Q 012673 279 GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 358 (458)
Q Consensus 279 Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~ 358 (458)
|||+++|+.++.||++.+.... ....++||+|||+++++++|+++++||++|+|+++|++|+|.+||+.|.++|+|.++
T Consensus 387 Gel~v~~~~~~~gy~~~~~~~~-~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~ 465 (545)
T PRK07768 387 GVIELRGESVTPGYLTMDGFIP-AQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPG 465 (545)
T ss_pred EEEEEccCcccccccCCCCCcc-cccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccc
Confidence 9999999999999998654433 334678999999999999999999999999999999999999999999999999998
Q ss_pred EEEeec--CCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccc--cCCeEEEEee-CCCCCC
Q 012673 359 VVVGIA--NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF--KAPRLFVLWR-KPFPLT 433 (458)
Q Consensus 359 ~v~~~~--~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~--~~p~~~~~~~-~~lP~t 433 (458)
++++++ +...++.+++++....... .....++.+++++ .+..+ ..|..+.++. ++||+|
T Consensus 466 ~vv~~~~~~~~~~~~~~~~v~~~~~~~---------------~~~~~~l~~~~~~-~l~~~~~~~p~~v~~v~~~~lP~t 529 (545)
T PRK07768 466 NAVAVRLDAGHSREGFAVAVESNAFED---------------PAEVRRIRHQVAH-EVVAEVGVRPRNVVVLGPGSIPKT 529 (545)
T ss_pred eEEEEEecCCCCceEEEEEEEeccccc---------------HHHHHHHHHHHHH-HHHHHhCCCccEEEEeCCCcCCCC
Confidence 777654 4444555555554432210 0122355666665 34333 5787766653 379999
Q ss_pred CcccchHHHHHHHHH
Q 012673 434 STGKIRRDEVRREVM 448 (458)
Q Consensus 434 ~~GKv~r~~l~~~~~ 448 (458)
++||++|+.|+++|+
T Consensus 530 ~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 530 PSGKLRRANAAELVT 544 (545)
T ss_pred CchhHHHHHHHHhcC
Confidence 999999999999774
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=329.84 Aligned_cols=350 Identities=23% Similarity=0.276 Sum_probs=271.3
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~ 140 (458)
.+-.++++.+|||||||.||..+++|.............++++++|+++..+|++|+++. ..+..++..|+|+|+-.+|
T Consensus 239 ~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKF 318 (649)
T KOG1179|consen 239 LTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKF 318 (649)
T ss_pred ccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEeccc
Confidence 455789999999999999999999999987777768889999999999999999999765 7888999999999999999
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+|+...+|++|++..+.-+++.|+..+..+.. ..+.+|..+ |..+.++.++.+.++|+..+|.+.||+||+.
T Consensus 319 SAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~e--r~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn 394 (649)
T KOG1179|consen 319 SASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEE--RQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGN 394 (649)
T ss_pred chhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhh--cCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCc
Confidence 999999999999999999999999999988665543 346888887 9999999999999999666799999999988
Q ss_pred cceeeeeecCCCCCCCCC--------CCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEe--cccc--
Q 012673 221 SSLTFMTLYDPTLETPGQ--------LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTR--GAHV-- 288 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~--g~~~-- 288 (458)
+........-........ ....++.. .|.|+.+-+---+.-.+||+|.++-+ ....
T Consensus 395 ~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~------------t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~ 462 (649)
T KOG1179|consen 395 SNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPE------------TGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLR 462 (649)
T ss_pred ceeeeecCccccccchhhhhhhccceEEEEecCC------------CCceeecCCceEEECCCCCCceEEEEeccCCchh
Confidence 654433211111100000 00001110 11111111111111126788866432 3344
Q ss_pred -chhhhcCcCCCCcc------cCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEE
Q 012673 289 -MLRYWDQFLAKPSV------STGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361 (458)
Q Consensus 289 -~~gy~~~~~~~~~~------~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 361 (458)
|.||.++...+... ..+|-||.|||+-.+|+.|++||.+|..|.++++||||+..|||++|.....+.|+.|+
T Consensus 463 ~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VY 542 (649)
T KOG1179|consen 463 SFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVY 542 (649)
T ss_pred hhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEE
Confidence 89999866665543 25788999999999999999999999999999999999999999999999999999999
Q ss_pred eecC--CCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccch
Q 012673 362 GIAN--ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR 439 (458)
Q Consensus 362 ~~~~--~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~ 439 (458)
|+.- .++..-.. .|+..+. ...+.+.+.+++++ .||+|.+|..+.+ .+++++|.|-|.+
T Consensus 543 GV~VP~~EGRaGMA-aI~~~p~----------------~~~d~~~l~~~l~~-~LP~YA~P~FlRl-~~~i~~TgTFKl~ 603 (649)
T KOG1179|consen 543 GVTVPGYEGRAGMA-AIVLDPT----------------TEKDLEKLYQHLRE-NLPSYARPRFLRL-QDEIEKTGTFKLQ 603 (649)
T ss_pred EEecCCccCccceE-EEEecCc----------------ccchHHHHHHHHHh-hCccccchHHHHH-HhhhhcccchhhH
Confidence 9643 33333344 4445544 23678889999998 7999999987655 5889999999999
Q ss_pred HHHHHHH
Q 012673 440 RDEVRRE 446 (458)
Q Consensus 440 r~~l~~~ 446 (458)
|..|++.
T Consensus 604 K~~L~~e 610 (649)
T KOG1179|consen 604 KTELQKE 610 (649)
T ss_pred HHHHHHc
Confidence 9999875
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=336.11 Aligned_cols=289 Identities=22% Similarity=0.211 Sum_probs=228.7
Q ss_pred CceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCC--CceEEeccchhhHhhh-HHHHHHHhcCceEEecCCCC
Q 012673 65 EGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGE--DDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPKFE 141 (458)
Q Consensus 65 ~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~--~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~ 141 (458)
++.++++|||||||.||||+++|+++..........+++.. .|++++.+|++|.+|+ ..++.++..|+++++.++++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~ 174 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP 174 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence 55889999999999999999999999887777777777754 3689999999999887 56778899999999988888
Q ss_pred hHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCcc
Q 012673 142 SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSS 221 (458)
Q Consensus 142 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 221 (458)
+..+++.++.+ |+++++|+++..+.+.. ..++++|. ++||+++++++++.+.+. +...+++.||+||+++
T Consensus 175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~------~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~ 244 (386)
T TIGR02372 175 ASGIMRHARPG--DLIVGTPFIWEQLADLD------YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGG 244 (386)
T ss_pred hHHHHHhhccC--CEEEECcHHHHHHHhhC------cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccc
Confidence 88888887643 89999999999887641 12456775 688999999999999875 2357999999999986
Q ss_pred ceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEeccccchhhhcCcCCCCc
Q 012673 222 SLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPS 301 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~~~~~gy~~~~~~~~~ 301 (458)
+++... + ...|.++|+.++.+ +. |.- .|
T Consensus 245 i~~~~~---~-------------------------~~~~~~~p~~~~~~-~~-----~~~--~g---------------- 272 (386)
T TIGR02372 245 IGLREA---P-------------------------DDPFRLLPDLACFA-DT-----LSS--AG---------------- 272 (386)
T ss_pred cccccC---C-------------------------CCCcccCCCccccC-CC-----ccC--CC----------------
Confidence 543211 0 01456677665533 11 100 01
Q ss_pred ccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEeccc
Q 012673 302 VSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRES 381 (458)
Q Consensus 302 ~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~ 381 (458)
...|++|||+++++++|+++++||+||+||++|++|+|.+||++|.+||+|.+++++. .++++++++++.++
T Consensus 273 ---~~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~ 344 (386)
T TIGR02372 273 ---LARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAED 344 (386)
T ss_pred ---ccceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCC
Confidence 1236899999999999999999999999999999999999999999999999998863 35789999988754
Q ss_pred cccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccch
Q 012673 382 WQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR 439 (458)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~ 439 (458)
.. .....+++++++++ .+++|++|+.+.++ ++||+|++||++
T Consensus 345 ~~--------------~~~~~~~l~~~~~~-~L~~~~~P~~i~~~-~~lP~t~~GKi~ 386 (386)
T TIGR02372 345 AD--------------EAELEIELRATAAR-HLPAPARPDRFRFG-TELPRTGAGKLA 386 (386)
T ss_pred CC--------------hHHHHHHHHHHHHH-hCCCCCCCcEEEEc-ccCCCCCCCCcC
Confidence 11 01124688899988 69999999988775 789999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=336.45 Aligned_cols=276 Identities=28% Similarity=0.371 Sum_probs=239.0
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFE 141 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~ 141 (458)
..++++++++|||||||.||+|.++|+++..+.......+++.++|++++..|++|.+++..++.++..|+++++.+...
T Consensus 117 ~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~ 196 (408)
T TIGR01733 117 SGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDE 196 (408)
T ss_pred CCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhh
Confidence 34789999999999999999999999999988888888888999999999999999999988999999999999987643
Q ss_pred ---hHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 142 ---SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 142 ---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
+..+...++++++|.+.++|.+++.|.+... ...+++|.+++||+++++++++.+.+.++++.+++.||+||
T Consensus 197 ~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~-----~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE 271 (408)
T TIGR01733 197 ERDAALLAALIAEHPVTVLNLTPSLLALLAAALP-----PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTE 271 (408)
T ss_pred ccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh-----hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCc
Confidence 5788899999999999999999999988754 23578999999999999999999999996699999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~ 293 (458)
++.++............ . ...++|.|+++++++|++++ .|+.|||+++|+.++.||+
T Consensus 272 ~g~~~~~~~~~~~~~~~-----------------~-~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~ 333 (408)
T TIGR01733 272 TTVWSTATLVDADDAPR-----------------E-SPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYL 333 (408)
T ss_pred eEEEEEEEEcCccccCC-----------------c-cccccCcccCCceEEEECCCCCCCCCCCceEEEecCcccccccc
Confidence 98766532222111100 0 13369999999999999875 5778999999999999999
Q ss_pred cCcCCCCcccCCC------c--eEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEE
Q 012673 294 DQFLAKPSVSTGE------V--WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV 360 (458)
Q Consensus 294 ~~~~~~~~~~~~~------~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 360 (458)
++++.+...+... + ||+|||+++++++|++++.||.+|+|+.+|++|+|.+||+++..++.|.+++|
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 334 NRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred CChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 9888777655322 2 99999999999999999999999999999999999999999999999998865
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=329.75 Aligned_cols=251 Identities=35% Similarity=0.559 Sum_probs=208.3
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHH--HhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI--AIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~--~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 139 (458)
.++++++++|||||||.||+|.++|+++........ ...+++ |++++.+|++|.+|+ ..++.++..|+++++.+.
T Consensus 153 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 230 (417)
T PF00501_consen 153 SPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSP 230 (417)
T ss_dssp TTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESS
T ss_pred CccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccccccccccccccccc
Confidence 579999999999999999999999999988766654 222333 699999999999999 889999999999999987
Q ss_pred CC---hHHHHHHHHHhcceEEeechHHHHHHHHHHHhh--ccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecc
Q 012673 140 FE---SKSALEAVEQHCVTSLITVPAIMADLATLIRVK--KTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAY 214 (458)
Q Consensus 140 ~~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 214 (458)
.. +..+++.++++++|+++++|.++..+++..+.. .....++++|.++++|+++++++.+.+++.++.+++++.|
T Consensus 231 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 310 (417)
T PF00501_consen 231 FDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLY 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEE
T ss_pred ccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccceecc
Confidence 54 467899999999999999999999998843222 0112456799999999999999999999999555999999
Q ss_pred ccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEecccc
Q 012673 215 GMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHV 288 (458)
Q Consensus 215 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~ 288 (458)
|+||++.+++........ ....++|.|+++++++|+|++ .|+.|||+++|+++
T Consensus 311 G~tE~~~~~~~~~~~~~~---------------------~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~ 369 (417)
T PF00501_consen 311 GSTETGSIATIRPPEDDI---------------------EKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNV 369 (417)
T ss_dssp EEGGGSSEEEEEETTTHH---------------------SSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTS
T ss_pred cccccceeeecccccccc---------------------cccccccccccccccccccccccccccccccccccccCCcc
Confidence 999999877644211100 012258999999999999986 67889999999999
Q ss_pred chhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeC
Q 012673 289 MLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSG 336 (458)
Q Consensus 289 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~ 336 (458)
+.||+++++.+...+..+|||+|||+|++++||+++++||+||+||++
T Consensus 370 ~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 370 FSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp BSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred ceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 999999988888877766899999999999999999999999999974
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=316.43 Aligned_cols=326 Identities=17% Similarity=0.174 Sum_probs=238.2
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHH---HHHHhhcCCCCceEEeccchhhH-hhhHHHHHHHhcCceEEec
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSL---AKIAIVGYGEDDVYLHTAPLCHI-GGLSSAMAMLMVGACHVFI 137 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~---~~~~~~~~~~~d~~~~~~p~~~~-~g~~~~~~~l~~G~~~v~~ 137 (458)
.+++++++++|||||||.||+|.++|.++..+.. .....+++.++|++++..++.+. .++...+.++..|++++.+
T Consensus 72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 4567899999999999999999999999865433 23345688999999887766543 3334456678889999888
Q ss_pred CCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 138 PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 138 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
+..++..+++.|++++||+++++|+++..|++.+...+......++|.++++||++++++.+.+.+.| ++++++.||+|
T Consensus 152 ~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~t 230 (422)
T TIGR02155 152 SGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLS 230 (422)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccch
Confidence 87788999999999999999999999999998766544322335899999999999999999999999 79999999999
Q ss_pred cCcc--ceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccC--CCceEEEecCC------CCCccEEEEeccc
Q 012673 218 ETSS--SLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA--PHVELKVCSDG------SSHVGRILTRGAH 287 (458)
Q Consensus 218 E~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~--~~~~~~i~d~~------~~~~Gel~v~g~~ 287 (458)
|+++ ++..+.... .|.++ +++.++++|++ .|+.|||++++..
T Consensus 231 E~~~~~~~~~~~~~~----------------------------~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~~ 282 (422)
T TIGR02155 231 EVIGPGVAMECVETQ----------------------------DGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTLT 282 (422)
T ss_pred hhcCCceeecccccC----------------------------CCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecCC
Confidence 9852 222111000 12222 34566788743 5788999999732
Q ss_pred cchhhhcCcCCCCcccCCCceEecCceEEEeCC-C-----cEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEE
Q 012673 288 VMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG-G-----NVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361 (458)
Q Consensus 288 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~-g-----~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 361 (458)
...+ ..+||+|||+++++++ | .+++.||.+|+|+++|.+|+|.+||.+|.+||+|...+.+
T Consensus 283 ------------~~~~-p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~ 349 (422)
T TIGR02155 283 ------------KEAL-PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQL 349 (422)
T ss_pred ------------cccc-ceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEE
Confidence 1122 4579999999999876 4 4689999999999999999999999999999999844444
Q ss_pred eecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEe-eCCCCCCCcccchH
Q 012673 362 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLW-RKPFPLTSTGKIRR 440 (458)
Q Consensus 362 ~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~-~~~lP~t~~GKv~r 440 (458)
.+......+.+.+.++..++..... ...+.....++|++.+++ .+..+.. +.+. +++||+|+ ||++|
T Consensus 350 ~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~-~~~~~~~---v~~~~~~~lp~~~-GK~~~ 417 (422)
T TIGR02155 350 ELTRNGHMDELTLKVELKPESYTLR-------LHEQASLLAGEIQHTIKQ-EVGVSMD---VHLVEPGSLPRSE-GKARR 417 (422)
T ss_pred EEEcCCCccEEEEEEEEecCccccc-------chHHHHHHHHHHHHHHHh-ccCcEEE---EEEECCCCccCCC-CCceE
Confidence 4544444567777777664421000 001111225678888877 4655532 3332 36899988 99987
Q ss_pred H
Q 012673 441 D 441 (458)
Q Consensus 441 ~ 441 (458)
.
T Consensus 418 ~ 418 (422)
T TIGR02155 418 V 418 (422)
T ss_pred E
Confidence 4
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=334.13 Aligned_cols=393 Identities=16% Similarity=0.168 Sum_probs=266.9
Q ss_pred cccccccchhhhhhccccCCCcceEEeeCCCC--cc-h-h--hhhhhhhhcccccCccc-ccCCCCCCCCCceEEEEe--
Q 012673 2 LVTDESSDSWYLELQHTAIPSLRWHVSLGSSS--SD-F-V--NKRDMLTADILKGYSLR-SLPFTHSWAPEGAVIICF-- 72 (458)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~--~~-~-~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~-- 72 (458)
+|++....+.+.++. .+.++++|++++.. .. . . ....++.++.+.+.... ..+.....+++|++.|+|
T Consensus 531 Vfv~~~~l~kl~~i~---~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtS 607 (1452)
T PTZ00297 531 VFADRNSVAAILTCR---SRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDN 607 (1452)
T ss_pred EEEchhHHHHHHhhc---ccCCcEEEEECCCcccccccccccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecC
Confidence 455555554444331 24688898886321 00 0 0 00012223333322211 112223447899999996
Q ss_pred -ccCCCCCccceecccHHHHHHHHHHHHhh---cCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCChHHHHHH
Q 012673 73 -TSGTTGSPKGVVISHSALIVQSLAKIAIV---GYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEA 148 (458)
Q Consensus 73 -TSGTTG~PK~v~~sh~~~~~~~~~~~~~~---~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 148 (458)
||||||.||||++||+|+++++....... ...++|++++++|++|+++....+.++..|+++.+ +++..+++.
T Consensus 608 yTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~---~d~~~lled 684 (1452)
T PTZ00297 608 TTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVAT---VDAAHLQRA 684 (1452)
T ss_pred CCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEe---CCHHHHHHH
Confidence 99999999999999999988877654422 35678999999999999998777788899998864 478999999
Q ss_pred HHHhcceEEeechHHHHHHHHHHHhhcc-------------------------c---------------cCCCCceEEEe
Q 012673 149 VEQHCVTSLITVPAIMADLATLIRVKKT-------------------------W---------------KGRDSVKKILN 188 (458)
Q Consensus 149 i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------~---------------~~~~~lr~i~~ 188 (458)
|++++||+++++|.++..+...+..... . ....++|.+++
T Consensus 685 L~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~is 764 (1452)
T PTZ00297 685 FVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVL 764 (1452)
T ss_pred HHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 9999999999999999987654321100 0 01246899998
Q ss_pred CCC--CCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCc
Q 012673 189 GGG--GLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHV 266 (458)
Q Consensus 189 ~G~--~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~ 266 (458)
||+ +++..+. . +++++.+||.||+. +....... ...|.|+|++
T Consensus 765 Gga~~~l~~~l~-----~--~i~i~~g~glTE~~---~~~~~~~~-------------------------~~~G~Plpgv 809 (1452)
T PTZ00297 765 CVSEESTSFSLL-----E--HISVCYVPCLREVF---FLPSEGVF-------------------------CVDGTPAPSL 809 (1452)
T ss_pred CCCccccChHHh-----C--CceEEEecceEEee---eecCCCCc-------------------------ccCCeecCce
Confidence 874 4543332 2 47788899999943 11111100 0249999999
Q ss_pred eEEEecCC----CCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceee-eCceeeC
Q 012673 267 ELKVCSDG----SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVY 341 (458)
Q Consensus 267 ~~~i~d~~----~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~ 341 (458)
++++.+.+ .+..|||++++ +++++.|.+.. ++|+ +||+|+|+||++|+|| .+|++|+
T Consensus 810 EvKI~~~~E~~~~~~~GEIlvr~-------~kdpe~T~e~~--~gW~---------~dG~L~IidRkKdlikls~GEyVa 871 (1452)
T PTZ00297 810 QVDLEPFDEPSDGAGIGQLVLAK-------KGEPRRTLPIA--AQWK---------RDRTLRLLGPPLGILLPVAYEYVI 871 (1452)
T ss_pred EEEEcccccccCCCCCCeEEEEE-------CCChHHHHHhh--CcCc---------cCCeEEEEeccccceECCCCcEEc
Confidence 99998642 23469999964 47777777642 4564 7899999999999999 7999999
Q ss_pred cHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEeccccc---ccccccccc------chhhhhhhh--HHHHHHH--
Q 012673 342 PEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQ---WSESNCDQS------SKNKELLLS--SEVLRQH-- 408 (458)
Q Consensus 342 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~---~~~~~~~~~------~~~~~~~~~--~~~l~~~-- 408 (458)
|+.||+++.++|.|.+++|+|...+ .++|+|++....- |..+..... .....+... .+.+.+.
T Consensus 872 P~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~ 947 (1452)
T PTZ00297 872 AAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFA 947 (1452)
T ss_pred HHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999985432 3889998875431 112111110 000011100 0112222
Q ss_pred -h-hhcccccccCCeEEEEeeCCC-----CCCCcccchHHHHHHHHHHHhhcCCCC
Q 012673 409 -C-REKNLTGFKAPRLFVLWRKPF-----PLTSTGKIRRDEVRREVMSHLKSLPSN 457 (458)
Q Consensus 409 -~-~~~~l~~~~~p~~~~~~~~~l-----P~t~~GKv~r~~l~~~~~~~~~~~~~~ 457 (458)
+ +.+.+..+++++.+.++.++| -+||+.|++|..+.++|++.|++||++
T Consensus 948 ~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY~~ 1003 (1452)
T PTZ00297 948 CIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSD 1003 (1452)
T ss_pred HHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHhcc
Confidence 2 223577899998877767777 389999999999999999999999985
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=264.37 Aligned_cols=279 Identities=16% Similarity=0.128 Sum_probs=198.1
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHH---hhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEec
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFI 137 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~ 137 (458)
++.++++.+++||||||.||+|.++|.++......... ..++.++|+++.+.++.+..+. ...++++..|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 45678999999999999999999999998755444333 3488999999999888776554 3345667888876644
Q ss_pred CCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 138 PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 138 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
.. ....++.|+++++|.+.++|+.+..|++.++..+......++|.+++||+++++++.+.+.+.| ++++++.||+|
T Consensus 163 ~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~T 239 (445)
T TIGR03335 163 GK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGST 239 (445)
T ss_pred Cc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCChh
Confidence 32 3456899999999999999999988888766554432346899999999999999999999988 79999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLR 291 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~g 291 (458)
|++. +..|... . ....+.+++.++|+|++ .|+.|||++++-.....
T Consensus 240 E~~~-~~~c~~~-~--------------------------g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~~ 291 (445)
T TIGR03335 240 EGTM-CGECQAV-A--------------------------GLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPGE 291 (445)
T ss_pred hhhh-eEEecCC-C--------------------------CccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCCc
Confidence 9863 2222110 0 01223345678888875 47789999986432100
Q ss_pred hhcCcCCCCcccCCCceEecCceEEEeC-C----C----cEEEEeeccceeeeCceeeCcHHHHHHHhcC---cCcc-eE
Q 012673 292 YWDQFLAKPSVSTGEVWLDTGDIGSIDD-G----G----NVWLVGRRNGRIKSGGENVYPEEVEAVLLQH---PGII-GI 358 (458)
Q Consensus 292 y~~~~~~~~~~~~~~~~~~TGD~~~~~~-~----g----~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~---~~v~-~~ 358 (458)
+... +--.|+|||++++.. + | ++...||.||+++++|.||+|.+||++|.++ +++. +.
T Consensus 292 ----r~~~-----PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~ 362 (445)
T TIGR03335 292 ----RCGS-----LLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEY 362 (445)
T ss_pred ----cCCc-----eEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccE
Confidence 0000 123489999999732 2 2 2445699999999999999999999999995 5554 34
Q ss_pred EEEeecCCCCcceEEEEEEecc
Q 012673 359 VVVGIANARLTEMVVACVRLRE 380 (458)
Q Consensus 359 ~v~~~~~~~~~~~~~a~v~~~~ 380 (458)
.++...+....+.+...+...+
T Consensus 363 ~~~~~~~~~~~~~~~v~~e~~~ 384 (445)
T TIGR03335 363 EAFLYGEEEGEITLRVSLECED 384 (445)
T ss_pred EEEEecCCCCCceEEEEEEecC
Confidence 4443333222234555555443
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=271.67 Aligned_cols=271 Identities=25% Similarity=0.340 Sum_probs=230.3
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC--
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-- 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-- 139 (458)
..+++++|++|||||||+||||..+|+++.....+....+.+..+|+++...++.+..+...++.++..|+++++.+.
T Consensus 363 ~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~ 442 (642)
T COG1020 363 LLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALL 442 (642)
T ss_pred CCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccc
Confidence 356899999999999999999999999998877777777899999999999999999999999999999999999875
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCC-CCceeeccccc
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP-KAKLISAYGMT 217 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~~i~~~YG~t 217 (458)
.++..+.+.+.++++|++..+|.++..+...............+|.+++||+.++.++...+....+ ...+.+.||+|
T Consensus 443 ~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpT 522 (642)
T COG1020 443 QVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPT 522 (642)
T ss_pred cCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCcc
Confidence 6788999999999999999999999998876322222122235899999999999999998888764 47899999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|+............... ...+|.|+++..+.++|.. .+..||+++.|.++..||
T Consensus 523 e~~~~~~~~~~~~~~~~---------------------~~piG~p~~n~~~~ild~~~~~~p~gv~gel~i~g~~~a~gy 581 (642)
T COG1020 523 EATLDAPSFPISAELES---------------------RVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGY 581 (642)
T ss_pred HHhhheeeEEcccccCC---------------------CCCcceeeCCCeEEEECCCCCcCCCCCCeeeEECCcchhhhh
Confidence 97654443332221110 1148999999999999853 567899999999999999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCc
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 353 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 353 (458)
++++..+.+.|..+.+|+|||++++.+||.+.++||.|+++|++|.+|.+.|||..+.++|
T Consensus 582 ~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 582 LNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642 (642)
T ss_pred cCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence 9999999988866558999999999999999999999999999999999999999998875
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=225.09 Aligned_cols=278 Identities=21% Similarity=0.208 Sum_probs=214.7
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHH---HHHHHhhcCCCCceEEeccch-hhHhhhHHHHHHHhcCceEEec
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQS---LAKIAIVGYGEDDVYLHTAPL-CHIGGLSSAMAMLMVGACHVFI 137 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~---~~~~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~l~~G~~~v~~ 137 (458)
..-++...|..||||||+|+-+.+++..+.... .......+...+|++..+..+ .+..|+..-+++-..|++++-.
T Consensus 87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~ 166 (438)
T COG1541 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI 166 (438)
T ss_pred ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence 455778889999999999999999998875443 333345578899998877764 3334444445666688888877
Q ss_pred CCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 138 PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 138 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
+.-+....+++++.+++|++.++|+.+..|++.+...+......++|.+++|+|++++++++.+.+.| |+.+++.||+|
T Consensus 167 ~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGlt 245 (438)
T COG1541 167 SGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGLT 245 (438)
T ss_pred CCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeeccccc
Confidence 66688889999999999999999999999999999887555567999999999999999999999999 89999999999
Q ss_pred cCccce-eeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccch
Q 012673 218 ETSSSL-TFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVML 290 (458)
Q Consensus 218 E~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~ 290 (458)
|..+.. ..|.... . .....++.-+.++|++ +|+.|||+++.-.
T Consensus 246 E~~g~g~~eC~~~~-g--------------------------lhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~--- 295 (438)
T COG1541 246 EGFGPGAGECTERN-G--------------------------LHIWEDHFIFEIVDPETGEQLPDGERGELVITTLT--- 295 (438)
T ss_pred cccCCccccccccc-C--------------------------CCcchhhceeeeecCCcCccCCCCCeeEEEEEecc---
Confidence 997653 3333221 1 1223345667778854 5778999998532
Q ss_pred hhhcCcCCCCcccCCCceEecCceEEEeCC----Cc-----EEEEeeccceeeeCceeeCcHHHHHHHhcCcCcc-eEEE
Q 012673 291 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDG----GN-----VWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII-GIVV 360 (458)
Q Consensus 291 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~----g~-----l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~-~~~v 360 (458)
... .+--.|+|||+..+..+ |+ ..+.||.||++++.|.+|+|..||.+|.+.+.+. +.++
T Consensus 296 ---------~~~-~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi 365 (438)
T COG1541 296 ---------KEG-MPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQI 365 (438)
T ss_pred ---------ccC-cceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEE
Confidence 000 02235899999999763 32 3588999999999999999999999999999999 7777
Q ss_pred EeecCCCCcceEEEEEEeccc
Q 012673 361 VGIANARLTEMVVACVRLRES 381 (458)
Q Consensus 361 ~~~~~~~~~~~~~a~v~~~~~ 381 (458)
+... +...+.+.+-|+..++
T Consensus 366 ~~~~-~~~~d~L~V~vE~~~~ 385 (438)
T COG1541 366 ILTR-NGGLDELTVRVELENE 385 (438)
T ss_pred EEec-CCCCceEEEEEEecCc
Confidence 7666 4445677778877654
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-26 Score=233.42 Aligned_cols=354 Identities=18% Similarity=0.195 Sum_probs=240.9
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHH-hcCceEEecCC--
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAML-MVGACHVFIPK-- 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l-~~G~~~v~~~~-- 139 (458)
-++..+++.||||+||.||+|.-+|..+.....++...+..+..+++-.....+++......+.++ ..|+.++++..
T Consensus 194 ~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~ 273 (1032)
T KOG1178|consen 194 GNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATI 273 (1032)
T ss_pred cccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchHHHHhhHhhcCceeecccccC
Confidence 457789999999999999999999999998888888888888888762223333444444444554 44554444433
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhh-----------ccccCCCCceEEEeCCCCCCHHHHHHHHhhCCC
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLATLIRVK-----------KTWKGRDSVKKILNGGGGLPSELMKEATNSFPK 207 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~ 207 (458)
-.+..+.+.+++++++..+.+|++.++++...... +.....+.+|...++|++....+...+.+.+..
T Consensus 274 ~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~ 353 (1032)
T KOG1178|consen 274 KDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAE 353 (1032)
T ss_pred ccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccc
Confidence 23688999999999999999999988887654321 111123479999999999999998866666533
Q ss_pred CceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCce-EecccCCCceEEEecCCCCCccEEEEe--
Q 012673 208 AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGV-CVGKPAPHVELKVCSDGSSHVGRILTR-- 284 (458)
Q Consensus 208 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~p~~~~~~~i~d~~~~~~Gel~v~-- 284 (458)
.-...-|++++................ ... .+....++.. .+|.+... .+... .+..|+.++-
T Consensus 354 ~~~~~~y~s~~~~~~~s~~~~~~s~~l---l~~-------~~v~~~p~~~~~~~~~~~~---~~~~~-~~~~~~~~v~~~ 419 (1032)
T KOG1178|consen 354 IFFGLPYLSTDPTGLVSYDDFSPSKVL---LTN-------ENVYSVPKFDSIIGSLTVL---ESLYR-AGGEGEGGVGKG 419 (1032)
T ss_pred eeeeecccCCCCccceeHHhhCcccce---ecc-------eeEEeccchhhccCCCcce---eeeec-cCcccCCcccce
Confidence 333344888887765443221110000 000 0000000000 11211111 11111 1222222222
Q ss_pred --------ccccchhhhcCcCCCC-ccc----CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhc
Q 012673 285 --------GAHVMLRYWDQFLAKP-SVS----TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 351 (458)
Q Consensus 285 --------g~~~~~gy~~~~~~~~-~~~----~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 351 (458)
+.++..|| ..++... ... ..+..|+|||.|+..++|.+.+.||.|++||.+|.++.+.+|+..+..
T Consensus 420 ~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~ 498 (1032)
T KOG1178|consen 420 CLGAEQNLSSWVVDGY-STPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEV 498 (1032)
T ss_pred eecccccccceeeccc-cchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhcc
Confidence 23333342 1222111 111 235689999999999999999999999999999999999999999999
Q ss_pred CcCcceEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCC
Q 012673 352 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP 431 (458)
Q Consensus 352 ~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP 431 (458)
||.|.++.+....+..-++.+.+|++...... ......|+.++.. .|+.|++|..++.+ +.+|
T Consensus 499 ~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~---------------~~~~~~i~~~l~~-~La~y~vPs~~V~l-~~vP 561 (1032)
T KOG1178|consen 499 HPDVKEAITLARENSTVGQTLLAFVVERGGSK---------------SVLIRDIRNYLKK-ELASYMLPSLVVPL-AKVP 561 (1032)
T ss_pred CcchhhhheeeeeccccCceEEEEEeccCCCC---------------chhHHHHHHhhcc-cccceecceEEEEh-hhCC
Confidence 99999999999988887999999999887632 1336789999998 79999999987775 7799
Q ss_pred CCCcccchHHHHHHHHHH
Q 012673 432 LTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 432 ~t~~GKv~r~~l~~~~~~ 449 (458)
+|++||||+++|.+ +..
T Consensus 562 l~~~GKvDkkaL~~-~~s 578 (1032)
T KOG1178|consen 562 LNPNGKVDKKALLE-YNS 578 (1032)
T ss_pred cCCCCCcChhhhhh-hhh
Confidence 99999999999999 443
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=199.06 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=110.3
Q ss_pred CCceEecCceEEE-eCCCcEEEEeeccceeeeCc---eeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecc
Q 012673 305 GEVWLDTGDIGSI-DDGGNVWLVGRRNGRIKSGG---ENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRE 380 (458)
Q Consensus 305 ~~~~~~TGD~~~~-~~~g~l~~~GR~~d~i~~~G---~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~ 380 (458)
.+|||+|||+|++ |++|+++++||.+ +| +||+|. ||++|.+||+|.+++|++++++.+|+.++|+|++..
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~ 280 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL 280 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence 6899999999998 6999999999998 78 899999 999999999999999999999999999999999763
Q ss_pred ccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhhcC
Q 012673 381 SWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSL 454 (458)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~~~ 454 (458)
. .+.++++++|++ .|+. ++|+.+.++ ++||+|++||++|+.|++...+..+.+
T Consensus 281 ~------------------~~~~el~~~l~~-~L~~-kvP~~v~~v-~~lP~t~~GKi~R~~Lr~~~~~~~~~l 333 (365)
T PRK09188 281 P------------------ADEKSLRARLAG-AKPP-KPPEHIQPV-AALPRDADGTVRDDILRLIAMNQIDEL 333 (365)
T ss_pred C------------------CCHHHHHHHHHh-hchh-cCCcEEEEE-CCCCCCCCCCccHHHHHHHhhcccccc
Confidence 2 356789999998 6999 999988775 789999999999999999876555544
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-18 Score=165.03 Aligned_cols=246 Identities=17% Similarity=0.135 Sum_probs=159.9
Q ss_pred eEEEEeccCCCCCccceecccHHHHHHHH---HHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCce-EEecC-CCC
Q 012673 67 AVIICFTSGTTGSPKGVVISHSALIVQSL---AKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGAC-HVFIP-KFE 141 (458)
Q Consensus 67 ~a~i~~TSGTTG~PK~v~~sh~~~~~~~~---~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~-~v~~~-~~~ 141 (458)
-..+..||||||.|-.+..+......... ......++..++++..++. ..+ .++.++..... +..++ ..+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~---~~~--~ly~~~~~~~~~~~~~~l~~~ 175 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLR---ADN--NLYQSVNNRWISLDFFDLLAP 175 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEc---cCh--hHHHHHHhccceeeecCCCcC
Confidence 45577899999999999999876532222 1112225566676655531 111 11111111111 11221 145
Q ss_pred hHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCcc
Q 012673 142 SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSS 221 (458)
Q Consensus 142 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 221 (458)
....++.|++++|+++.++|+.+..|++.++..+.. .++|.++++||.++++..+.+.+.| ++++++.||+|| |.
T Consensus 176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~---~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~ 250 (430)
T TIGR02304 176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT---IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GF 250 (430)
T ss_pred HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC---CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hh
Confidence 788999999999999999999999999987765532 4789999999999999999999999 799999999999 55
Q ss_pred ceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEeccccchhhhcCcCCCCc
Q 012673 222 SLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPS 301 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~~~~~gy~~~~~~~~~ 301 (458)
+++.|... .. ++-...-.+|..++|++. .+..++++- .+.
T Consensus 251 la~eC~~g--~l------------------------Hl~ed~~~vE~~ivD~~~--~~~~ViT~L------~n~------ 290 (430)
T TIGR02304 251 LASTCRCG--TL------------------------HLNEDLVHIEKQYLDEHK--RFVPIITDF------TRT------ 290 (430)
T ss_pred eEEecCCC--CE------------------------EEccccEEEEeeEECCCC--ceEEEEecC------CCc------
Confidence 55544221 01 111111123444677642 244555541 110
Q ss_pred ccCCCceEecCceEEEeCC----Cc----E-EEEeeccceeee---Cc--eeeCcHHHHHHHh-cCcCcceEEEEee
Q 012673 302 VSTGEVWLDTGDIGSIDDG----GN----V-WLVGRRNGRIKS---GG--ENVYPEEVEAVLL-QHPGIIGIVVVGI 363 (458)
Q Consensus 302 ~~~~~~~~~TGD~~~~~~~----g~----l-~~~GR~~d~i~~---~G--~~v~~~~iE~~l~-~~~~v~~~~v~~~ 363 (458)
. .+--.|+|||++.+.++ |. + .+.||.+|+++. +| .+|+|..++.++. ..++|.+..++..
T Consensus 291 ~-~PlIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~ 366 (430)
T TIGR02304 291 T-QPIVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQT 366 (430)
T ss_pred c-ceEEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEc
Confidence 0 02224899999988543 32 3 388999999985 34 5569999988744 5789999988853
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-15 Score=149.20 Aligned_cols=369 Identities=15% Similarity=0.133 Sum_probs=242.9
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC--
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK-- 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~-- 139 (458)
.++.+|++-+.--++|+--++.+||..+++.+........+.+..-++.+.+.+...|+ .+.+...++|...+++++
T Consensus 941 ~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~ 1020 (1363)
T KOG3628|consen 941 NKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMD 1020 (1363)
T ss_pred CCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHH
Confidence 45789999999999999999999999999999998888887777667767766666665 677888999999888775
Q ss_pred --CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhcc-----ccCCCCceEEEeCCCCCCHHHHHHHHhhCCC-----
Q 012673 140 --FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT-----WKGRDSVKKILNGGGGLPSELMKEATNSFPK----- 207 (458)
Q Consensus 140 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~----- 207 (458)
-++..++..|+++++.-.+.+-..+..+......... ....++ ..++..-++-...+.+.+.+.|..
T Consensus 1021 l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~-s~vv~~~~RPr~ali~sf~klfa~igLsp 1099 (1363)
T KOG3628|consen 1021 LENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSS-SIVVPAEERPRIALIASFKKLFAAIGLSP 1099 (1363)
T ss_pred hhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhccccc-ceeeecCCccHHHHHHHHHHHHHHcCCCh
Confidence 5789999999999998888777777666554322111 011111 233444455555666666665521
Q ss_pred CceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCC-----CceEecccCCCceEEEecCC------CC
Q 012673 208 AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQP-----QGVCVGKPAPHVELKVCSDG------SS 276 (458)
Q Consensus 208 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~G~p~~~~~~~i~d~~------~~ 276 (458)
-.+-..|+.-=.-.++.. ...++.......+...+........... ...-.|...+++++.|++++ .|
T Consensus 1100 ~avStsys~r~Np~Ic~r-~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dg 1178 (1363)
T KOG3628|consen 1100 RAVSTSYSSRVNPFICLR-SYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDG 1178 (1363)
T ss_pred hhhcccccccCChHhhhc-cccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccccccccC
Confidence 123334554332222211 1000000000001111111111111111 11124788899999999987 68
Q ss_pred CccEEEEeccccchhhhcCcCC--C--------CcccCCCceEecCceEEEeC------C----CcEEEEeeccceeeeC
Q 012673 277 HVGRILTRGAHVMLRYWDQFLA--K--------PSVSTGEVWLDTGDIGSIDD------G----GNVWLVGRRNGRIKSG 336 (458)
Q Consensus 277 ~~Gel~v~g~~~~~gy~~~~~~--~--------~~~~~~~~~~~TGD~~~~~~------~----g~l~~~GR~~d~i~~~ 336 (458)
+.||||+.+.+-+.+|++-... + .....+..|-||||+|++.. + ..+|++|-.++.+..+
T Consensus 1179 e~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~ 1258 (1363)
T KOG3628|consen 1179 ELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELN 1258 (1363)
T ss_pred CcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeec
Confidence 9999999999998888754211 1 11123668999999999742 2 2589999999999999
Q ss_pred ceeeCcHHHHHHHh-cCcCcceEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccc
Q 012673 337 GENVYPEEVEAVLL-QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 415 (458)
Q Consensus 337 G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 415 (458)
|.+.+|.+||.-+. .||.|.+++|+. ++..++.+++.... ....+|.-.+.+..|.
T Consensus 1259 GL~h~p~DIE~TV~~vH~~I~~cavF~-----~~glvVvviE~~gq------------------~~~~~LvPlIv~~vL~ 1315 (1363)
T KOG3628|consen 1259 GLRHFPSDIETTVERVHPSIGGCAVFQ-----ATGLVVVVIECHGQ------------------QELADLVPLIVNVVLE 1315 (1363)
T ss_pred CcccCcchHHHHHHHhcccccceeeEe-----eCCeEEEEEEecCc------------------hhHhhhhHHHHHHHHh
Confidence 99999999999766 589999999995 45566666666542 1233444444443566
Q ss_pred cccCCeEEEEeeC--CCCCCCcccchHHHHHHHHH-HHhhcCCC
Q 012673 416 GFKAPRLFVLWRK--PFPLTSTGKIRRDEVRREVM-SHLKSLPS 456 (458)
Q Consensus 416 ~~~~p~~~~~~~~--~lP~t~~GKv~r~~l~~~~~-~~~~~~~~ 456 (458)
.+.+.-.++.+++ .+|+++.|-.+|..+++.+. .+++-+|.
T Consensus 1316 eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~~kL~~~~v 1359 (1363)
T KOG3628|consen 1316 EHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLAGKLDPIYV 1359 (1363)
T ss_pred hcceEEEEEEEecCCccccCCchhhHHHHHHHHHHhcccceeee
Confidence 6666666555554 69999999999999988765 55566553
|
|
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.9e-13 Score=96.39 Aligned_cols=71 Identities=39% Similarity=0.628 Sum_probs=60.6
Q ss_pred HHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCC--e
Q 012673 344 EVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAP--R 421 (458)
Q Consensus 344 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p--~ 421 (458)
|||++|.+||+|.+++|++++++.+|+.++|++++ . .++|++++++ .|++|++| .
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~--~--------------------~~~i~~~~~~-~l~~~~~P~~~ 57 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL--D--------------------EEEIRDHLRD-KLPPYMVPRRI 57 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE--H--------------------HHHHHHHHHH-HS-GGGS-SEE
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe--e--------------------ecccccchhh-hCCCcceeeEE
Confidence 79999999999999999999999999999999987 1 3789999998 69999999 5
Q ss_pred EEEEeeCCCCCCCccc
Q 012673 422 LFVLWRKPFPLTSTGK 437 (458)
Q Consensus 422 ~~~~~~~~lP~t~~GK 437 (458)
.++.+.++||+|+|||
T Consensus 58 ~~v~~~~~lP~t~~GK 73 (73)
T PF13193_consen 58 RFVRLDEELPRTPSGK 73 (73)
T ss_dssp EEEEESSSEEBETTSS
T ss_pred EEccccCcCCCCCCCC
Confidence 5555444599999998
|
... |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-10 Score=104.55 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=70.2
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 139 (458)
..+++|++.|+||||+ +|.++..+. ...+++++|+++ .+|++|.+|+ ..++.++..|++++++++
T Consensus 146 ~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~r 211 (227)
T TIGR03089 146 PPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTH 211 (227)
T ss_pred CCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecC
Confidence 3467999999999986 565655443 567789999999 9999999998 568899999999999999
Q ss_pred CChHHHHHHHHHhcce
Q 012673 140 FESKSALEAVEQHCVT 155 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t 155 (458)
|++..+++.|+++|+|
T Consensus 212 Fd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 212 PDPARLDQIAETERVT 227 (227)
T ss_pred CCHHHHHHHHHhhcCC
Confidence 9999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=97.57 Aligned_cols=223 Identities=17% Similarity=0.166 Sum_probs=131.4
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhh----cCCC-CceEEeccchhhH-hhh----HHHHHHHhcC
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV----GYGE-DDVYLHTAPLCHI-GGL----SSAMAMLMVG 131 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~----~~~~-~d~~~~~~p~~~~-~g~----~~~~~~l~~G 131 (458)
.+++++..++.||||||.|--+.+.+..+..+.......+ +... .-.++...|-... ..+ ......+..+
T Consensus 86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
T PF04443_consen 86 VPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG 165 (365)
T ss_pred cChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence 3567788899999999998666666665554443333322 2222 1223333333211 111 1222333444
Q ss_pred ceEEecCC--CChHHHHHHHH----HhcceEEeechHHHHHHHHHHHhhccccCCC-CceEEEeCC------CCCC-HHH
Q 012673 132 ACHVFIPK--FESKSALEAVE----QHCVTSLITVPAIMADLATLIRVKKTWKGRD-SVKKILNGG------GGLP-SEL 197 (458)
Q Consensus 132 ~~~v~~~~--~~~~~~~~~i~----~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~-~lr~i~~~G------~~l~-~~~ 197 (458)
.. .+... ++...++..+. +.++-.+++.|.++-.++..++..+....++ ..+.+-.|| +.++ +++
T Consensus 166 ~~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef 244 (365)
T PF04443_consen 166 SR-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEF 244 (365)
T ss_pred ce-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHH
Confidence 44 44433 66776666554 4468889999998888877776665543332 345555555 5565 567
Q ss_pred HHHHHhhCCCC----ceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecC
Q 012673 198 MKEATNSFPKA----KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD 273 (458)
Q Consensus 198 ~~~~~~~~~~~----~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 273 (458)
.+.+.+.| |+ .+++.||+||.....+.+.... . ...++ +.+.|+
T Consensus 245 ~~~l~~~~-Gv~~~~~i~~~ygmtEl~s~~~~~~~~~----------------------------~-~~p~w--V~iRDp 292 (365)
T PF04443_consen 245 YARLQEVF-GVIPIENIYDMYGMTELNSQAYECGHGH----------------------------F-HVPPW--VIIRDP 292 (365)
T ss_pred HHHHHHHH-CCCCHHHeeeeeeccccchhheeCCCCc----------------------------c-cCCCe--EEEECC
Confidence 77788888 55 8999999999876655442211 1 11123 444455
Q ss_pred C------CCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCC--------CcEEEEeeccc
Q 012673 274 G------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG--------GNVWLVGRRNG 331 (458)
Q Consensus 274 ~------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~--------g~l~~~GR~~d 331 (458)
+ .|+.|-|.+-.+.... .-+..-|.|+|.+..+ .++.++||.+.
T Consensus 293 ~tl~~~~~Ge~Gli~vidl~~~s--------------~p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~ 350 (365)
T PF04443_consen 293 ETLEPLPPGETGLIQVIDLANTS--------------YPGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG 350 (365)
T ss_pred CCCcCCCCCCeeEEEEEcccccC--------------CCcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence 4 5677877765543221 1123569999987654 37999999764
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.7e-09 Score=105.34 Aligned_cols=360 Identities=15% Similarity=0.133 Sum_probs=208.1
Q ss_pred eEEEEeccCCCCCccceecccHHHHHHHHHHHHh--------------------hcCCCCceEEeccchhhHhhh-HHHH
Q 012673 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI--------------------VGYGEDDVYLHTAPLCHIGGL-SSAM 125 (458)
Q Consensus 67 ~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~--------------------~~~~~~d~~~~~~p~~~~~g~-~~~~ 125 (458)
..||-||++++|.--|++++|+ +..+...+... ++....+.++..+....-.|+ ++++
T Consensus 252 ~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~ 330 (1363)
T KOG3628|consen 252 YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVL 330 (1363)
T ss_pred eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhh
Confidence 8999999999999999999997 44333322221 122345556666666555565 6688
Q ss_pred HHHhcCceEEecCC---CChHHHHHHHHHhcceEEeechHHHHHHHHHHHh---------hccccCCCCceEEEeCCCCC
Q 012673 126 AMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRV---------KKTWKGRDSVKKILNGGGGL 193 (458)
Q Consensus 126 ~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------~~~~~~~~~lr~i~~~G~~l 193 (458)
.++++|.|.+.+++ +.|..+.+++.+++.+++..--..+++.....++ +....+++++|.+++....+
T Consensus 331 ~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~v 410 (1363)
T KOG3628|consen 331 VALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMVTCTAV 410 (1363)
T ss_pred hhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEEeeeec
Confidence 99999999999997 7788999999999999987765444443322111 11124568999999999999
Q ss_pred CHHHHHHHHhhC----CCCceeecccccc----CccceeeeeecC----CCCCCCC--------CCCccccccCCC----
Q 012673 194 PSELMKEATNSF----PKAKLISAYGMTE----TSSSLTFMTLYD----PTLETPG--------QLPQAFGNVTPN---- 249 (458)
Q Consensus 194 ~~~~~~~~~~~~----~~~~i~~~YG~tE----~~~~~~~~~~~~----~~~~~~~--------~~~~~~~~~~~~---- 249 (458)
..+..+.....+ +...+...|-.-+ -|++........ .....++ .....+.....+
T Consensus 411 d~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v 490 (1363)
T KOG3628|consen 411 DTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEV 490 (1363)
T ss_pred chHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEE
Confidence 998765544433 1111222222222 222211111000 0000000 000000000000
Q ss_pred ----CCCCCCceEecccCCC-ceEEEecCC------CCCccEEEEeccccchhhhcCcCCCCcccC------------CC
Q 012673 250 ----SVHQPQGVCVGKPAPH-VELKVCSDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVST------------GE 306 (458)
Q Consensus 250 ----~~~~~~~~~~G~p~~~-~~~~i~d~~------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~------------~~ 306 (458)
........-+|.-.++ +.+.+++++ .+++|||||.++.+..+||.-+..|...|. ..
T Consensus 491 ~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~ 570 (1363)
T KOG3628|consen 491 DTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNV 570 (1363)
T ss_pred cchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccc
Confidence 0000011113444443 455666666 689999999999999999977666655442 12
Q ss_pred ceEecCceEEEeCCCcEEEEeeccceee-eCceeeCcHH----------HHHHHhcCcCcceEEEEeecCCCCcceEEEE
Q 012673 307 VWLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVYPEE----------VEAVLLQHPGIIGIVVVGIANARLTEMVVAC 375 (458)
Q Consensus 307 ~~~~TGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~----------iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~ 375 (458)
.+.|||=+|++.++ .++++|-++|++. ..|-..+..+ |+-+++..+.|.++.++- .|+++..
T Consensus 571 ~FmRtGLlGFv~~g-ki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~------~E~~~Vv 643 (1363)
T KOG3628|consen 571 PFMRTGLLGFVHNG-KIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE------DEHIVVV 643 (1363)
T ss_pred hhhhhcceeeeeCC-eEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee------cceEEEE
Confidence 46799999999875 5666666666666 5665544333 455667778889998885 3445545
Q ss_pred EEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEE--EEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 376 VRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLF--VLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 376 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~--~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
++-++... . ++..+..+ ++.+.+. .-+++--+. +.-.+.||||+-|-+.-.++++.|.+
T Consensus 644 ~~esP~a~-e--------~~~~q~~~--~v~q~l~----~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~ 704 (1363)
T KOG3628|consen 644 VLESPDAT-E--------ENSFQWMS--RVFQALD----SIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLE 704 (1363)
T ss_pred EEeCcchh-h--------hhhhhHHH--HHHHHHH----HHhcccceEEEEeccccCCCccccccccHHHHHHHHc
Confidence 44444321 0 00011111 1222221 122222121 22247899999999999999998874
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.1e-07 Score=90.23 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=50.0
Q ss_pred EecCceEEEeC--CC--cEEEEeeccceeeeCceeeCcHHHHHHHhcC-----cCcceEEEEeecCCCCcceEEEEEEec
Q 012673 309 LDTGDIGSIDD--GG--NVWLVGRRNGRIKSGGENVYPEEVEAVLLQH-----PGIIGIVVVGIANARLTEMVVACVRLR 379 (458)
Q Consensus 309 ~~TGD~~~~~~--~g--~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-----~~v~~~~v~~~~~~~~~~~~~a~v~~~ 379 (458)
|+.||++++.. ++ .+.|+||.+.++.+.|++++-.+|+.++.+. -.+.+..+...........-+.++++.
T Consensus 371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~ 450 (528)
T PF03321_consen 371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELE 450 (528)
T ss_dssp EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEEC
T ss_pred eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeC
Confidence 79999999863 34 7999999999999999999999999998875 345677776653222233455666665
Q ss_pred cc
Q 012673 380 ES 381 (458)
Q Consensus 380 ~~ 381 (458)
..
T Consensus 451 ~~ 452 (528)
T PF03321_consen 451 GE 452 (528)
T ss_dssp S-
T ss_pred CC
Confidence 43
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0006 Score=69.50 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=38.4
Q ss_pred EecCceEEEeC----CCcEEEEeeccceeeeCceeeCcHHHHHHHhc
Q 012673 309 LDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 351 (458)
Q Consensus 309 ~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 351 (458)
|+.||.+++.. --.|.|+||.+..+.+.|+++.-.+++.++.+
T Consensus 410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 78999999864 24789999999999999999999999998877
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0015 Score=66.04 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=38.6
Q ss_pred eEecCceEEEeC----CCcEEEEeeccceeeeCceeeCcHHHHHHHhcC
Q 012673 308 WLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352 (458)
Q Consensus 308 ~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 352 (458)
.||.||+.++.. ...|.|++|.+.+..+.|++++-.++..++.+.
T Consensus 422 RYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a 470 (612)
T PLN02620 422 RYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNA 470 (612)
T ss_pred EEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence 478999999853 457999999999999999999999998887764
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0017 Score=65.81 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=39.1
Q ss_pred eEecCceEEEeC----CCcEEEEeeccceeeeCceeeCcHHHHHHHhcCc
Q 012673 308 WLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 353 (458)
Q Consensus 308 ~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 353 (458)
.||.||+.++.. -..|.|++|.+.+..+.|++++-.++..++.+..
T Consensus 416 RYrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a~ 465 (606)
T PLN02247 416 RYRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQAK 465 (606)
T ss_pred EEecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHHH
Confidence 478999999853 4579999999999999999999999988887643
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00022 Score=54.48 Aligned_cols=90 Identities=24% Similarity=0.400 Sum_probs=49.1
Q ss_pred ceeeCcHHHHHHHhcCcCcc-eEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccc
Q 012673 337 GENVYPEEVEAVLLQHPGII-GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 415 (458)
Q Consensus 337 G~~v~~~~iE~~l~~~~~v~-~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 415 (458)
|.||+|..||++|.++|++. +..++... ....+.+...+...++..... .+.....+.+.+.+++ .+
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~-~~~~D~l~v~vE~~~~~~~~~---------~~~~~l~~~i~~~lk~-~l- 68 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTR-EGGLDELTVRVELRPGFSDDA---------EDLEALAERIAERLKE-RL- 68 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEE-ETTEEEEEEEEEESTTCCTTH---------HHHHHHHHHHHHHHHH-HH-
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEc-CCCCcEEEEEEEECCccCcch---------HHHHHHHHHHHHHHHh-hc-
Confidence 88999999999999999999 55555443 345677888888877531000 0111223455555555 22
Q ss_pred cccCCeEEEEeeCCCCCCCcccchH
Q 012673 416 GFKAPRLFVLWRKPFPLTSTGKIRR 440 (458)
Q Consensus 416 ~~~~p~~~~~~~~~lP~t~~GKv~r 440 (458)
... |+.-+.-..+||++ .||..|
T Consensus 69 gv~-~~V~lv~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 69 GVR-PEVELVPPGTLPRS-EGKAKR 91 (96)
T ss_dssp SS--EEEEEE-TT-S----SSSS-S
T ss_pred Cce-EEEEEECCCCccCC-CCcceE
Confidence 111 22222224679998 678876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 458 | ||||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 5e-24 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 4e-22 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 5e-20 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 1e-19 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 1e-19 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 2e-19 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 3e-19 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 9e-19 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 4e-18 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 5e-17 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 9e-17 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 9e-17 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 1e-16 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 6e-16 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 7e-16 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-15 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-15 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-15 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 2e-14 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-14 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 1e-13 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 1e-13 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 3e-13 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 9e-13 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 2e-12 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 4e-12 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 2e-11 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 4e-10 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 7e-10 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 4e-09 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 1e-08 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 1e-08 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 1e-08 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 1e-07 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 4e-07 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 1e-06 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 9e-06 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 1e-05 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 3e-05 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 4e-05 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 5e-05 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 5e-05 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 3e-04 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 3e-04 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 4e-04 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 4e-04 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 5e-04 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 5e-04 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 5e-04 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 5e-04 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 5e-04 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 8e-04 |
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 293 bits (752), Expect = 1e-94
Identities = 97/389 (24%), Positives = 162/389 (41%), Gaps = 50/389 (12%)
Query: 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL 121
+ + I FTSGTTG K V + ++ +G+ D +L P+ HI GL
Sbjct: 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL 219
Query: 122 SSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 181
S + ++ G + KF ++ L ++ +T + VP + L +
Sbjct: 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY----- 274
Query: 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 241
+++KIL GG L + +++ A + +++GMTET S T
Sbjct: 275 NLQKILLGGAKLSATMIETALQYN--LPIYNSFGMTETCSQFLTATPEM----------- 321
Query: 242 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPS 301
+ P++ VG P+ +V++K+ + G ++ +GA+VM Y +
Sbjct: 322 --LHARPDT--------VGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPTDLTGT 371
Query: 302 VSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361
G + +TGDI ID G V + RR I SGGEN+YP ++E V Q PGI V V
Sbjct: 372 FENG--YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCV 429
Query: 362 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR 421
G + ++ +S L + + L +K P+
Sbjct: 430 GHPDDTWGQVPKLYFVSESD------------------ISKAQLIAYLSKH-LAKYKVPK 470
Query: 422 LFVLWRKPFPLTSTGKIRRDEVRREVMSH 450
F P TSTGK++R+++ RE H
Sbjct: 471 HFEK-VDTLPYTSTGKLQRNKLYREGHHH 498
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 287 bits (736), Expect = 7e-92
Identities = 89/394 (22%), Positives = 166/394 (42%), Gaps = 61/394 (15%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
+ + I +TSGTTG PKGVV +H ++ + + + + D L P+ H+ L+
Sbjct: 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT 227
Query: 123 SAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD- 181
+ + M G + +P+F++ + + V VPAI+ + + + D
Sbjct: 228 TVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAE----LDA 283
Query: 182 -SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
+ + GG +P L+K +++ Y +TE+ T + D L G
Sbjct: 284 PDFRYFITGGAPMPEALIKIYA--AKNIEVVQGYALTESCGGGTLLLSEDA-LRKAGS-- 338
Query: 241 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV----GRILTRGAHVMLRYWDQF 296
G+ ++ V D G ++ + ++ YW+
Sbjct: 339 ------------------AGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWN-- 378
Query: 297 LAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
+P +T + W TGDIG IDD G +++ R I SGGENVYP E+E+V++
Sbjct: 379 --RP-EATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGV 435
Query: 353 PGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK 412
PG+ + V+G+ + + E+ A V ++ +S + + ++C +
Sbjct: 436 PGVSEVAVIGLPDEKWGEIAAAIVVADQN-----------------EVSEQQIVEYCGTR 478
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446
L +K P+ + + P TGKI + +R +
Sbjct: 479 -LARYKLPKKVIF-AEAIPRNPTGKILKTVLREQ 510
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 283 bits (726), Expect = 1e-90
Identities = 102/403 (25%), Positives = 162/403 (40%), Gaps = 65/403 (16%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHIGG 120
P I +TSGTTG PK +I A + L VG +G +V L PL H+ G
Sbjct: 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210
Query: 121 LSSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKG 179
+ + A L + +V + +F AL+ V+Q VTSL P + LA +
Sbjct: 211 FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK 270
Query: 180 RDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
DS++ + G +P +++ P + ++ YG TE +SL P T
Sbjct: 271 LDSLRHVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAMNSLYMR---QPKTGT---- 322
Query: 240 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH--------VGRILTRG-AHVML 290
P E+++ G G ++ +
Sbjct: 323 -------------------EMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFV 363
Query: 291 RYWDQFLAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE 346
Y + +P +T E W T D+ G V ++GR + I SGGEN++P E+E
Sbjct: 364 GYLN----QP-QATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418
Query: 347 AVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 406
VL PG+ +VV+G+A+ R + V ACV R LS++ L
Sbjct: 419 RVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET----------------LSADALD 462
Query: 407 QHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449
CR L FK P+ + + P + K+ R ++ ++V S
Sbjct: 463 TFCRSSELADFKRPKRYFI-LDQLPKNALNKVLRRQLVQQVSS 504
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 280 bits (720), Expect = 1e-89
Identities = 97/442 (21%), Positives = 163/442 (36%), Gaps = 80/442 (18%)
Query: 19 AIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTH-SWAPEGAVIICFTSGTT 77
++ ++ ++G S F +D+ + PF+ + +I T+
Sbjct: 123 SLGGVKKAYAIGDGSGPFAPFKDLASDT----------PFSAPEFGAADGFVIIHTAAVG 172
Query: 78 GSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFI 137
G P+G +IS L++ + + E DV L PL H+ GL + + G V
Sbjct: 173 GRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232
Query: 138 PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SVKKILNGGGGLPS 195
KF+ A +E H VT + ++ ++ S++ +
Sbjct: 233 AKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAP------AQLASLRAVTGLDTPETI 286
Query: 196 ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQ 255
E + P A + +G +ETS TF D P S
Sbjct: 287 ERFEAT---CPNATFWATFGQSETSGLSTFAPYRD----------------RPKSA---- 323
Query: 256 GVCVGKPAPHVELKVC-SDGSS----HVGRILTRGAHVMLRYWDQFLAKPSVSTGEV--- 307
G+P + V ++ VG I+ RG V YW+ +T
Sbjct: 324 ----GRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWN----NA-AATQHAFRN 374
Query: 308 -WLDTGDIGSIDDGGNVWLVGRRNGR--IKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 364
W TGD+G D G ++ GR + IK+GGENVYP EVE L QHP I VV+G+
Sbjct: 375 GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVP 434
Query: 365 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV 424
+ + +E + A + ++++ L + + +K P+ V
Sbjct: 435 DPQWSEAIKAVCVCKPGES----------------IAADALAEFVASL-IARYKKPKHVV 477
Query: 425 LWRKPFPLTSTGKIRRDEVRRE 446
+ P + G I R V+
Sbjct: 478 F-VEALPKDAKGAIDRAAVKTA 498
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 272 bits (699), Expect = 3e-86
Identities = 99/468 (21%), Positives = 162/468 (34%), Gaps = 73/468 (15%)
Query: 1 MLVTDESSDSWYLELQHT---AIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLP 57
++ D S Y L +P+L+ + G + +F+ D+ T
Sbjct: 126 YIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE-EFLPLEDLHTEP----------V 174
Query: 58 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH 117
+ + G+TG K + +H I + + VYL P+ H
Sbjct: 175 KLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAH 234
Query: 118 IGGLSSAMAM--LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK 175
LSS + L G V P A +E+ VT VP +
Sbjct: 235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAAS--- 291
Query: 176 TWKGRD--SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTL 233
+ D S++ + GG +E + F L +GM E + T + D
Sbjct: 292 -SRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-CTLQQVFGMAEGLVNYTRL---DDPE 346
Query: 234 ETPGQLPQAFGNVTPNSVHQPQGVCVGKP-APHVELKV-------CSDGSSHVGRILTRG 285
E + N+ GKP +P+ E +V G G +LTRG
Sbjct: 347 E-----------IIVNTQ--------GKPMSPYDESRVWDDHDRDVKPG--ETGHLLTRG 385
Query: 286 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEV 345
+ + Y+ + T + + TGDI + G + + GR +I GGE V EEV
Sbjct: 386 PYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEV 445
Query: 346 EAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVL 405
E LL HP + +V + + L E + R+ + L
Sbjct: 446 ENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-----------------APKAAEL 488
Query: 406 RQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 453
+ RE+ L +K P + FP T GK+ + +R + L +
Sbjct: 489 KAFLRERGLAAYKIPDRVEF-VESFPQTGVGKVSKKALREAISEKLLA 535
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 272 bits (699), Expect = 2e-85
Identities = 89/399 (22%), Positives = 151/399 (37%), Gaps = 59/399 (14%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMA 126
A + GTTG+PK + +H+ + I + + YL P H +SS +
Sbjct: 187 AYFQ-LSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGS 245
Query: 127 M--LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 182
+ + G V + +E+H V VP ++ L + + S
Sbjct: 246 LGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLW--LQALIEGESRAQLAS 303
Query: 183 VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 242
+K + GG L + L +L +GM E + T L D +
Sbjct: 304 LKLLQVGGARLSATLAARIPAEIG-CQLQQVFGMAEGLVNYTR--LDDSAEKIIH----- 355
Query: 243 FGNVTPNSVHQPQGVCVGKP-APHVELKV-------CSDGSSHVGRILTRGAHVMLRYWD 294
G P P E+ V G VGR++TRG + Y+
Sbjct: 356 ---------------TQGYPMCPDDEVWVADAEGNPLPQG--EVGRLMTRGPYTFRGYYK 398
Query: 295 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 354
S + +GD+ SID G + + GR +I GGE + EE+E +LL+HP
Sbjct: 399 SPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPA 458
Query: 355 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 414
+I +V + + + E A + ++E L + +R+ RE+ +
Sbjct: 459 VIYAALVSMEDELMGEKSCAYLVVKEP------------------LRAVQVRRFLREQGI 500
Query: 415 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 453
FK P V PLT+ GK+ + ++R+ + S +
Sbjct: 501 AEFKLPDR-VECVDSLPLTAVGKVDKKQLRQWLASRASA 538
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 265 bits (680), Expect = 1e-83
Identities = 95/398 (23%), Positives = 156/398 (39%), Gaps = 67/398 (16%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
+ I +TSGTTG KG ++SH L SL + + DDV +H P+ H GL
Sbjct: 153 GADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLF 212
Query: 123 SAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 181
A L +F+PKF+ L+ + + T L+ VP L R
Sbjct: 213 VASNVTLFARGSMIFLPKFDPDKILDLMAR--ATVLMGVPTFYTRLLQSPR----LTKET 266
Query: 182 --SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
++ ++G L ++ +E + ++ YGMTET+ + T + PG
Sbjct: 267 TGHMRLFISGSAPLLADTHREWSAKTG-HAVLERYGMTETNMN-TSNPYDGDRV--PG-- 320
Query: 240 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH------VGRILTRGAHVMLRYW 293
VG P V +V + +G I +G +V YW
Sbjct: 321 ------------------AVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYW 362
Query: 294 DQFLAKPSVSTGEV-----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV 348
P T + TGD+G ID+ G V ++GR + +GG NVYP+E+E+
Sbjct: 363 R----MPE-KTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESE 417
Query: 349 LLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQH 408
+ PG++ V+G+ +A E V A V + + +
Sbjct: 418 IDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGAT----------------IDEAQVLHG 461
Query: 409 CREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446
+ L FK P+ + P + GK++++ +R
Sbjct: 462 LDGQ-LAKFKMPKKVIF-VDDLPRNTMGKVQKNVLRET 497
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 264 bits (676), Expect = 9e-83
Identities = 94/468 (20%), Positives = 168/468 (35%), Gaps = 69/468 (14%)
Query: 1 MLVTDESSDSWYLELQHT---AIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLP 57
++ + + + + S + L ++DF + T +
Sbjct: 131 LIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPA-------ETFV 183
Query: 58 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH 117
S + + G+TG+PK + +H+ A I G + L P H
Sbjct: 184 DFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPH 243
Query: 118 IGGLSSAMAM--LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK 175
LSS A+ L G C V P E + +++H V VP+ +
Sbjct: 244 NFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAA--- 300
Query: 176 TWKGRD--SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTL 233
S+K + GG P L ++ KL +GM E + T + D +
Sbjct: 301 -QYKDQIQSLKLLQVGGASFPESLARQVPEVLN-CKLQQVFGMAEGLVNYTRL---DDSD 355
Query: 234 ETPGQLPQAFGNVTPNSVHQPQGVCVGKP-APHVELKV-------CSDGSSHVGRILTRG 285
E + G+P + E+K+ +G +G + TRG
Sbjct: 356 E-----------QIFTTQ--------GRPISSDDEIKIVDEQYREVPEG--EIGMLATRG 394
Query: 286 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEV 345
+ Y+ V + + +GD+ GN+ +VGR +I GGE + EE+
Sbjct: 395 PYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEI 454
Query: 346 EAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVL 405
E ++L HP ++ +V I + + E A + R L + VL
Sbjct: 455 EKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNP-----------------ELKAVVL 497
Query: 406 RQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 453
R+H E + +K P + + PLT+ GK+ + ++R + + S
Sbjct: 498 RRHLMELGIAQYKLPD-QIKLIESLPLTAVGKVDKKQLRSILNTSTTS 544
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 4e-81
Identities = 95/400 (23%), Positives = 148/400 (37%), Gaps = 63/400 (15%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
++ +TSGTTG PKG VI AL A + +DV + PL H+ GL
Sbjct: 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLV 212
Query: 123 SAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRV-KKTWKGR 180
+ L G + +F ++ A + T L VP + +A + + K
Sbjct: 213 LGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFGVPTMYHRIAETLPADPELAKAL 271
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
+ +++G LP + + ++I YGMTET + + D
Sbjct: 272 AGARLLVSGSAALPVHDHERIAAATG-RRVIERYGMTETLMNTSV--RAD---------- 318
Query: 241 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD--------GSSHVGRILTRGAHVMLRY 292
G + VG P P VEL++ + VG I RG ++ Y
Sbjct: 319 ---GEPRAGT--------VGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEY 367
Query: 293 WDQFLAKPSVSTGEV-----WLDTGDIGSIDDGGNVWLVGRRNGR-IKSGGENVYPEEVE 346
+ +P T + TGD+ D G V +VGR+ IKSGG + E+E
Sbjct: 368 LN----RPDA-TAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIE 422
Query: 347 AVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 406
LL+HP + V G + L E +VA + + + L
Sbjct: 423 NALLEHPEVREAAVTGEPDPDLGERIVAWIVPAD---------------PAAPPALGTLA 467
Query: 407 QHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446
H + L K PR+ P GKI + + R+
Sbjct: 468 DHVAAR-LAPHKRPRVVRYLDA-VPRNDMGKIMKRALNRD 505
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 247 bits (634), Expect = 2e-76
Identities = 100/434 (23%), Positives = 172/434 (39%), Gaps = 55/434 (12%)
Query: 36 FVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIV--- 92
F + +T+ + G++ + +I +SG+TG PKGV + H V
Sbjct: 161 FQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFS 220
Query: 93 QSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQH 152
+ I D L P H G+ + + L+ G V + +FE + L +++ +
Sbjct: 221 HARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDY 280
Query: 153 CVTSLITVPAIMADLATLIRVKKTWKGRD--SVKKILNGGGGLPSELMKEATNSFPKAKL 210
+ S + VP + + A + K D ++ +I +GG L E+ + F +
Sbjct: 281 KIQSALLVPTLFSFFAKSTLIDK----YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGI 336
Query: 211 ISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKV 270
YG+TET+S++ G+ P + VGK P E KV
Sbjct: 337 RQGYGLTETTSAILI---------------TPEGDDKPGA--------VGKVVPFFEAKV 373
Query: 271 CSD------GSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVW 324
G + G + RG +M Y + A ++ + WL +GDI D+ + +
Sbjct: 374 VDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFF 433
Query: 325 LVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQW 384
+V R IK G V P E+E++LLQHP I V G+ + E+ A V L
Sbjct: 434 IVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM 493
Query: 385 SESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
+E + + + + +T K R V++ P TGK+ ++R
Sbjct: 494 TE----------------KEIVDYVASQ-VTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 536
Query: 445 REVMSHLKSLPSNL 458
++ K S L
Sbjct: 537 EILIKAKKGGKSKL 550
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 6e-75
Identities = 102/437 (23%), Positives = 170/437 (38%), Gaps = 58/437 (13%)
Query: 19 AIPSLRWHVSLGSS--SSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGT 76
+ +++ V L S + + + G+ S E +I +SG+
Sbjct: 144 TVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGS 203
Query: 77 TGSPKGVVISHSALI---VQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGAC 133
TG PKGV ++H ++ + I L P H G+ + + L+ G
Sbjct: 204 TGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFR 263
Query: 134 HVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SVKKILNGGG 191
V + KF+ ++ L+ ++ + TS+I VP + A L + K D ++ +I +GG
Sbjct: 264 VVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNK----YDLSNLVEIASGGA 319
Query: 192 GLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSV 251
L E+ + F + YG+TET+S++ G+ P +
Sbjct: 320 PLSKEVGEAVARRFNLPGVRQGYGLTETTSAIII---------------TPEGDDKPGA- 363
Query: 252 HQPQGVCVGKPAPHVELKVCSD------GSSHVGRILTRGAHVMLRYWDQFLAKPSVSTG 305
GK P + KV G + G + +G +M Y + A +
Sbjct: 364 -------SGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDE 416
Query: 306 EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 365
E WL TGDIG D+ + ++V R IK G V P E+E+VLLQHP I V G+ +
Sbjct: 417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPD 476
Query: 366 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVL 425
E+ A V L +E + + + + ++ K R V
Sbjct: 477 PVAGELPGAVVVLESGKNMTE----------------KEVMDYVASQ-VSNAKRLRGGVR 519
Query: 426 WRKPFPLTSTGKI-RRD 441
+ P TGKI R
Sbjct: 520 FVDEVPKGLTGKIDGRA 536
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 242 bits (621), Expect = 1e-74
Identities = 87/397 (21%), Positives = 153/397 (38%), Gaps = 58/397 (14%)
Query: 68 VIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAM 127
+I +T GTTG PKGV+++H L +L G D + P+ H M
Sbjct: 183 ALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLM 242
Query: 128 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 187
+ VG +V + F + E +E++ T VP + L + +K
Sbjct: 243 VTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFA 302
Query: 188 NGGGGLPSELMKE------ATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 241
G + L+++ + P+ + +GMTE +T +
Sbjct: 303 TGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRL--DKST---- 356
Query: 242 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCS--DGSS----HVGRILTRGAHVMLRYW-- 293
G P +ELKV S DG G I+ RG ++ YW
Sbjct: 357 ----------------TQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKR 400
Query: 294 ----DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 349
+ + TGD+G ID+ G + R IK G + P E+EA+L
Sbjct: 401 EKENQECWWYDEKGRK--FFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALL 458
Query: 350 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHC 409
++H ++ + V+G + E+ A + L+ ++ + E + +
Sbjct: 459 MKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGK--------------VDEEDIIEWV 504
Query: 410 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446
RE+ ++G+K R V + + P T++GK+ R +R +
Sbjct: 505 RER-ISGYKRVRE-VEFVEELPRTASGKLLRRLLREK 539
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 239 bits (613), Expect = 1e-73
Identities = 114/435 (26%), Positives = 185/435 (42%), Gaps = 71/435 (16%)
Query: 26 HVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVI 85
+ + S+ ++ ++ AD + +P+ V + ++SGTTG PKGV++
Sbjct: 146 VMCVDSAPDGCLHFSELTQAD-------ENEAPQVDISPDDVVALPYSSGTTGLPKGVML 198
Query: 86 SHSALIVQSLAKIAIVG----YGEDDVYLHTAPLCHIGGLSSAM-AMLMVGACHVFIPKF 140
+H LI ++ + +DV L P+ HI L+S M L VGA + +PKF
Sbjct: 199 THKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKF 258
Query: 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SVKKILNGGGGLPSELM 198
E S L +E++ V+ VP +M +A + K D S++ I +GG L EL
Sbjct: 259 EIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK----HDLSSLRMIKSGGAPLGKELE 314
Query: 199 KEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVC 258
FP+A+L YGMTE L + ++ P +
Sbjct: 315 DTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEP----------FDIKPGAC------- 357
Query: 259 VGKPAPHVELKVCSD------GSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEV----- 307
G + E+K+ + G I RG +M Y + P +T
Sbjct: 358 -GTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLN----DPE-ATSRTIDKEG 411
Query: 308 WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANAR 367
WL TGDIG IDD +++V R IK G V P E+EA+L+ HP I VVG+ +
Sbjct: 412 WLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDED 471
Query: 368 LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWR 427
E+ VA V E Q + + ++Q+ ++ + +K + V +
Sbjct: 472 AGEVPVAFVVKSEKSQ----------------ATEDEIKQYISKQ-VIFYKRIKR-VFFI 513
Query: 428 KPFPLTSTGKI-RRD 441
+ P +GKI R++
Sbjct: 514 EAIPKAPSGKILRKN 528
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 5e-70
Identities = 92/395 (23%), Positives = 156/395 (39%), Gaps = 66/395 (16%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSAM 125
A + ++SG+TG PKG V +H+ L + + G E+DV A L GL + +
Sbjct: 186 AFWL-YSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGL 244
Query: 126 -AMLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD-- 181
L VGA + + + + + + +H T VP + A++ + R
Sbjct: 245 TFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPA----RADV 300
Query: 182 SVKKILNGGGGLPSELM---KEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 238
+++ + G LP E+ +++ G TE
Sbjct: 301 AIRICTSAGEALPREIGERFTAHFG----CEILDGIGSTEMLHIFLSN------------ 344
Query: 239 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKV-------CSDGSSHVGRILTRGAHVMLR 291
G V + G+P P E+++ DG VG + +G +
Sbjct: 345 ---RAGAVEYGTT--------GRPVPGYEIELRDEAGHAVPDG--EVGDLYIKGPSAAVM 391
Query: 292 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 351
YW+ + GE W+ +GD G GR + +K G+ V P EVE VL+Q
Sbjct: 392 YWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ 450
Query: 352 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 411
H ++ VVG+ + L + A V L+ + SE + +E L+ ++
Sbjct: 451 HDAVLEAAVVGVDHGGLVK-TRAFVVLKREFAPSE-------------ILAEELKAFVKD 496
Query: 412 KNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446
+ L K PR V P T+TGKI+R ++R +
Sbjct: 497 R-LAPHKYPRDIVF-VDDLPKTATGKIQRFKLREQ 529
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 5e-63
Identities = 109/392 (27%), Positives = 165/392 (42%), Gaps = 54/392 (13%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG----YGEDDVYLHTAPLCHIG 119
P+ V + ++SGTTG PKGV+++H L+ ++ + DDV L P+ HI
Sbjct: 224 PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY 283
Query: 120 GLSSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWK 178
L+S M L VGA + +PKFE LE +++ VT VP I+ +A +K
Sbjct: 284 ALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEK--- 340
Query: 179 GRD--SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 236
D S++ + +G L EL FP AKL YGMTE L +
Sbjct: 341 -YDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKE---- 395
Query: 237 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD------GSSHVGRILTRGAHVML 290
V + G + E+K+ + G I RG +M
Sbjct: 396 ------PFPVKSGAC--------GTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMK 441
Query: 291 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 350
Y + A + WL TGDIG IDD +++V R IK G V P E+EA+L+
Sbjct: 442 GYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI 501
Query: 351 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCR 410
HP I + VV + E+ VA V + + SE + ++Q
Sbjct: 502 GHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSE----------------DDVKQFVS 545
Query: 411 EKNLTGFKAPRLFVLWRKPFPLTSTGKI-RRD 441
++ + +K V + + P +GKI R+D
Sbjct: 546 KQ-VVFYKRINK-VFFTESIPKAPSGKILRKD 575
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 4e-57
Identities = 100/404 (24%), Positives = 162/404 (40%), Gaps = 51/404 (12%)
Query: 64 PEGAVI-ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYG--EDDVYLHTAPLCHIGG 120
PE A + +T+GTTG PKGVV SH AL++ SLA + G E DV L P+ H+
Sbjct: 174 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA 233
Query: 121 LSSAMAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKG 179
A +VGA V P+ + S +E + VT VP + LA +
Sbjct: 234 WCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG--HR 291
Query: 180 RDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
++++++ GG P L+ ++ YG+TETS + + +
Sbjct: 292 LKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEE- 348
Query: 240 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS--------DGSSHVGRILTRGAHVMLR 291
+ ++ G+ P P V L+V DG + +G + +G +
Sbjct: 349 EKL-------TLKAKTGL----PIPLVRLRVADEEGRPVPKDGKA-LGEVQLKGPWITGG 396
Query: 292 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 351
Y+ A S T + + TGDI D+ G V + R IKSGGE + ++E L+
Sbjct: 397 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMG 456
Query: 352 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 411
HP + VV I + + E +A V R E E+ +
Sbjct: 457 HPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPE----------------ELNEHLLKA 500
Query: 412 KNLTGFKAPR--LFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 453
++ P +F + P TS GK + +R + ++
Sbjct: 501 G-FAKWQLPDAYVFA---EEIPRTSAGKFLKRALREQYKNYYGG 540
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 2e-43
Identities = 94/409 (22%), Positives = 159/409 (38%), Gaps = 80/409 (19%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
+ A I FTSGT+G PK S+S+L +++ G D+ + I +
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNIL 263
Query: 123 SA-MAMLMVGACHVFI---PKFESKSALEAVEQHCVTSLITVPAIMADLATLIR--VKKT 176
+ M +GAC F+ PKF+ L+ + + + S++ P + R +++
Sbjct: 264 CSLMEPWALGAC-TFVHLLPKFDPLVILKTLSSYPIKSMMGAP-------IVYRMLLQQD 315
Query: 177 WKGRD--SVKKILNGGGGLPSELM---KEATNSFPKAKLISAYGMTETSSSLTFMTLYDP 231
++ + G L E + + T + +YG TET LT M
Sbjct: 316 LSSYKFPHLQNCVTVGESLLPETLENWRAQTG----LDIRESYGQTETG--LTCMVS--K 367
Query: 232 TLET-PGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKV-------CSDGSSHVGRILT 283
T++ PG +G A ++++ G+ G I
Sbjct: 368 TMKIKPG--------------------YMGTAASCYDVQIIDDKGNVLPPGT--EGDIGI 405
Query: 284 RGAHV-----MLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGE 338
R + Y D + G+ WL GD G D+ G +GR + I S G
Sbjct: 406 RVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGY 464
Query: 339 NVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKEL 398
+ P EVE L++HP ++ V+ + E+V A V L + + ++L
Sbjct: 465 RIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDP--------EQL 516
Query: 399 LLSSEVLRQHCREKNLTGFKAPRL--FVLWRKPFPLTSTGKIRRDEVRR 445
++ L+QH + +K PR FV P T TGKI+R ++R
Sbjct: 517 ---TKELQQHVKSV-TAPYKYPRKIEFV---LNLPKTVTGKIQRAKLRD 558
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 4e-36
Identities = 84/417 (20%), Positives = 143/417 (34%), Gaps = 52/417 (12%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
+ +TSG+T PKGV++SH L+ ++ + P H GL
Sbjct: 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLI 224
Query: 123 SA-MAMLMVGACHVFIP--KFESKSA--LEAVEQHCVTSLITV-PAIMADLATLIRVKKT 176
+ + G + + F L+ + ++ T I+ P D ++
Sbjct: 225 GCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKAT--ISGSPNFAYDYCVKRIREEK 282
Query: 177 WKGRD--SVKKILNGGGGLPSELMKE-----ATNSFPKAKLISAYGMTETSSSLTFMTL- 228
+G D S NG + E M+ F K YG+ E + +T T
Sbjct: 283 KEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPG 342
Query: 229 YDPTLETPGQLPQAFGNVTPNSVHQPQG---VCVGKPAPHVE------LKVCSDGSSHVG 279
T + V + P V G P V+ L C VG
Sbjct: 343 SSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFD--QVG 400
Query: 280 RILTRGAHVMLRYWDQ-------FLAK-PSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNG 331
I + V YW+Q F K ++L TGD+G + + +++ GR
Sbjct: 401 EIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHE-NELYVTGRIKD 459
Query: 332 RIKSGGENVYPEEVEAVLLQ-HPGII--GIVVVGIANARLTEMVVACVRLRESWQWSESN 388
I G+N YP+++E L+ + I ++ V C E
Sbjct: 460 LIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMC----------EVK 509
Query: 389 CDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445
+ L +E+ + E + + ++ K P T++GKIRR+ R+
Sbjct: 510 NRFMDDVAQDNLFNEI-FELVYEN--HQLEVHTIVLIPLKAMPHTTSGKIRRNFCRK 563
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-33
Identities = 98/404 (24%), Positives = 162/404 (40%), Gaps = 84/404 (20%)
Query: 69 IICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA-MAM 127
++ F+SGT G PK V ++ + L +D ++ A +
Sbjct: 229 LVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQ 288
Query: 128 LMVGACHVFI---PKFESKSALEAVEQHCVTSLITVPAIMADLATLIR--VKKTWKGRD- 181
+ G VF+ +FE+K+ LE ++ VT+ P T+ R +K+ +
Sbjct: 289 WIAGCA-VFVYDYDRFEAKNMLEKASKYGVTTFCAPP-------TIYRFLIKEDLSHYNF 340
Query: 182 -SVKKILNGGGGLPSELM---KEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 237
++K + G L E+ E T KL+ +G TET ++ P
Sbjct: 341 STLKYAVVAGEPLNPEVFNRFLEFTG----IKLMEGFGQTETVVTIATF---------PW 387
Query: 238 QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKV-------CSDGSSHVGRI---LTRGAH 287
P+ P S+ GKP P ++++ C G G I G
Sbjct: 388 MEPK------PGSI--------GKPTPGYKIELMDRDGRLCEVGE--EGEIVINTMEGKP 431
Query: 288 VMLR--YWDQFLAKPSVSTGEVWLD----TGDIGSIDDGGNVWLVGRRNGRIKSGGENVY 341
V L Y P T E W D TGD+ +D+ G +W VGR + IK+ G V
Sbjct: 432 VGLFVHYGK----DPE-RTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVG 486
Query: 342 PEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLS 401
P EVE+ L+QHP ++ + G+ + +++ A + L + + S+ L
Sbjct: 487 PFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSD----------SL--- 533
Query: 402 SEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445
L+ H + +K PR+ + + P T +GKIRR E+R
Sbjct: 534 KNELQDHVK-NVTAPYKYPRI-IEFVPELPKTISGKIRRVEIRD 575
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-28
Identities = 89/412 (21%), Positives = 141/412 (34%), Gaps = 97/412 (23%)
Query: 68 VIICFTSGTTGSPKGVVISHSALI--VQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS--- 122
+I FTSGTTG PKGV ISH L+ + + A + L P S
Sbjct: 150 II--FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPP------YSFDL 201
Query: 123 SAMAM---LMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKT 176
S M L +G +PK + Q V + P+ AD+A ++
Sbjct: 202 SVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPS-FADMA-MLSDDFC 259
Query: 177 WKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 236
++ G L ++ FP AK+I+AYG TE + +L+ + + ++
Sbjct: 260 QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNY 319
Query: 237 GQLPQAFGNVTPNS-VH--------QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAH 287
+LP G P+S + G G E+ V +++G
Sbjct: 320 TRLP--IGYPKPDSPTYIIDEDGKELSSGE-QG------EIIVTGPA-------VSKG-- 361
Query: 288 VMLRYWDQ-------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGR-------RNGRI 333
Y + F G+ TGDIGS+ + + GR RI
Sbjct: 362 ----YLNNPEKTAEAFFTFK----GQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRI 413
Query: 334 KSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA-----RLTEMVVACVRLRESWQWSESN 388
E E+V L Q P + V V N L +V
Sbjct: 414 ----E---LEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVV-------------K 453
Query: 389 CDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
+ L ++ ++ ++ + + P F+ +R PLT GKI
Sbjct: 454 DGVKERFDRELELTKAIKASVKDH-MMSYMMPSKFL-YRDSLPLTPNGKIDI 503
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 6e-28
Identities = 85/411 (20%), Positives = 150/411 (36%), Gaps = 102/411 (24%)
Query: 68 VIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS---SA 124
+I +TSG+TG+PKGV I+++ L+ + + V+L+ AP S S
Sbjct: 149 II--YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAP------FSFDLSV 200
Query: 125 MAM---LMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWK 178
M + L+ G I K ++EQ + + P+ L+ +
Sbjct: 201 MDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC--LMEASFSES 258
Query: 179 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 238
++K L G LP+E+ ++ FPKA +++ YG TE + ++T + + + L+
Sbjct: 259 MLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKS 318
Query: 239 LP--QAFGNVTPNSVH--------QPQGVCVGKPAPHVELKVCSDGSSHVGRI-LTRGAH 287
LP + + P G G E+ + ++ G
Sbjct: 319 LPVGYCKSDCR---LLIMKEDGTIAPDGE-KG------EI--------VIVGPSVSVG-- 358
Query: 288 VMLRYWDQ-------FLAKPSVS---TGEV-WLDTGDI---GSIDDGGNVWLVGRRNGRI 333
Y F TG+ +++ G + G +D + R+
Sbjct: 359 ----YLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDFQ-----IKLHGYRM 409
Query: 334 KSGGENVYPEEVEAVLLQHPGIIGIVVV----GIANARLTEMVVACVRLRESWQWSESNC 389
E EE+E L + G V+V G L +VV
Sbjct: 410 ----E---LEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVP--------------- 447
Query: 390 DQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
+ S KE L+S +++ E+ L + PR F+ P+T GK+ R
Sbjct: 448 GEHSFEKEFKLTSA-IKKELNER-LPNYMIPRKFMYQSS-IPMTPNGKVDR 495
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 4e-27
Identities = 81/409 (19%), Positives = 143/409 (34%), Gaps = 98/409 (23%)
Query: 68 VIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS---SA 124
+I +TSG+TG+PKGV IS + L + A ++L+ AP S S
Sbjct: 148 II--YTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAP------FSFDLSV 199
Query: 125 MAM---LMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWK 178
M + L G + K E +++ + + P+ + L+ +
Sbjct: 200 MDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMC--LMDPGFSQD 257
Query: 179 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 238
+ G LP + K FPKAK+ + YG TE + ++T + + + +
Sbjct: 258 LLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSES 317
Query: 239 LPQAFGNVTPN-SVH--------QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVM 289
LP G P+ ++ P+G G E+ + ++RG
Sbjct: 318 LP--VGFAKPDMNIFIMDEEGQPLPEGE-KG------EIVIAGPS-------VSRG---- 357
Query: 290 LRYWDQ-------FLAKPSVS---TGEV-WLDTGDI---GSIDDGGNVWLVGRRNGRIKS 335
Y + F + TG+ ++ G I G +D + R+
Sbjct: 358 --YLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQ-----IKLHGYRM-- 408
Query: 336 GGENVYPEEVEAVLLQHPGIIGIVVV----GIANARLTEMVVACVRLRESWQWSESNCDQ 391
E EE+E + Q + VV+ L +V ++
Sbjct: 409 --E---LEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVP---------------EE 448
Query: 392 SSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
KE L+S +++ L + PR F+ +T+ GKI R
Sbjct: 449 HEFEKEFQLTSA-IKKELAAS-LPAYMIPRKFIYQDH-IQMTANGKIDR 494
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 84/405 (20%), Positives = 147/405 (36%), Gaps = 96/405 (23%)
Query: 68 VIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAM 127
++ +TSGTTG PKG + +H+ + + + + + + D +L + A
Sbjct: 612 IM--YTSGTTGKPKGNITTHANI-QGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYAS 668
Query: 128 LMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 184
++ A + + + + Q V + A+ L ++
Sbjct: 669 MLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA-----GEDWMKGLR 723
Query: 185 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP--QA 242
IL GG +++A KLI+ YG TE + T + ++ LP +
Sbjct: 724 CILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVV-HDLPDSISSLPIGKP 782
Query: 243 FGNVTPNSVH--------QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWD 294
N + V+ QP G VG EL + G +++G Y +
Sbjct: 783 ISNAS---VYILNEQSQLQPFGA-VG------ELCISGMG-------VSKG------YVN 819
Query: 295 Q-------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGR-------RNGRIKSGGENV 340
+ F+ P GE TGD+ G + GR R RI E
Sbjct: 820 RADLTKEKFIENP-FKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRI----E-- 872
Query: 341 YPEEVEAVLLQHPGIIGIVVV----GIANARLTEMVVACVRLRESWQWSESNCDQSSKNK 396
EE+E L ++PG+ VVV +A + A + R
Sbjct: 873 -LEEIEKQLQEYPGVKDAVVVADRHESGDASI----NAYLVNRTQ--------------- 912
Query: 397 ELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI-RR 440
LS+E ++ H +++ L + P+ F + PLT+ GK+ +R
Sbjct: 913 ---LSAEDVKAHLKKQ-LPAYMVPQTFTFLDE-LPLTTNGKVNKR 952
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-25
Identities = 60/308 (19%), Positives = 102/308 (33%), Gaps = 44/308 (14%)
Query: 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSAL------IVQSLAKIAIVGYGEDDVYLHTA 113
+ +TSG+T +P GVV+SH + ++ + +
Sbjct: 178 KEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWL 237
Query: 114 PLCHIGGLSSA-MAMLMVGACHVFIPK--FESKSA--LEAVEQHCVTSLITV-PAIMADL 167
P H GL A ++ G V F + A + + + P +L
Sbjct: 238 PFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA--FSAAPNFAFEL 295
Query: 168 ATLIRVKKTWKGRD--SVKKILNGGGGLPSELMKE-----ATNSFPKAKLISAYGMTETS 220
A GRD ++ IL+G + + +K A + + + +Y + E +
Sbjct: 296 AARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEAT 355
Query: 221 SSLTFMTLYD-PTLETPGQLPQAFGNVTP-NSVHQPQGVCVGKPAPHVE-------LKVC 271
+ P + G+ P + P + C
Sbjct: 356 VYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIEC 415
Query: 272 SDGSSHVGRILTRGAHVMLRYWDQ----------FLAKPSVSTGE-VWLDTGDIGSIDDG 320
DG VG I G +V YW + + PS T E WL TGD G + D
Sbjct: 416 PDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVTD- 472
Query: 321 GNVWLVGR 328
G ++++GR
Sbjct: 473 GKMFIIGR 480
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 4e-24
Identities = 95/406 (23%), Positives = 137/406 (33%), Gaps = 105/406 (25%)
Query: 68 VIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLC-HIGGLSSAMA 126
VI +TSGTTG+PKG ++ H + + + E D A + MA
Sbjct: 187 VI--YTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMA 244
Query: 127 MLMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 183
L+ GA I K + + Q +T + P + L + S+
Sbjct: 245 -LLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD--------PERILSI 295
Query: 184 KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP--- 240
+ ++ G L+ + K I+AYG TET+ T + T ET G
Sbjct: 296 QTLITAGSATSPSLVNKW---KEKVTYINAYGPTETT---ICATTWVATKETIGHSVPIG 349
Query: 241 QAFGNVTPNSVH--------QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRY 292
N ++ + G G EL + +G L RG Y
Sbjct: 350 APIQNTQ---IYIVDENLQLKSVGE-AG------ELCIGGEG-------LARG------Y 386
Query: 293 WDQ-------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGR-------RNGRIKSGGE 338
W + F+ P GE TGD GN+ +GR R R+ E
Sbjct: 387 WKRPELTSQKFVDNPF-VPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRV----E 441
Query: 339 NVYPEEVEAVLLQHPGIIGIVVV----GIANARLTEMVVACVRLRESWQWSESNCDQSSK 394
EEVE++LL+H I V L A +
Sbjct: 442 ---LEEVESILLKHMYISETAVSVHKDHQEQPYL----CAYFVSEKH------------- 481
Query: 395 NKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 440
+ E LRQ E+ L + P F+ K PLTS GKI R
Sbjct: 482 -----IPLEQLRQFSSEE-LPTYMIPSYFIQLDK-MPLTSNGKIDR 520
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 9e-22
Identities = 79/416 (18%), Positives = 130/416 (31%), Gaps = 104/416 (25%)
Query: 68 VIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGY--------GEDDVYLHTAPLC--- 116
++ +TSG+TG+PKGV +S L S A ++G G +L A
Sbjct: 180 LL--YTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDV 237
Query: 117 HIGGLSSAMAMLMVGACHVFIPKFESKSAL-EAVEQHCVTSLITVPAIMADLATLIRVKK 175
HIG + A G C V + L + VT VP+ + D L
Sbjct: 238 HIGEMFLA---WRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPS-LLDQTGL----- 288
Query: 176 TWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLET 235
+ + + GG + + +S + L++ YG TE + + ++
Sbjct: 289 VPEDAPHLVYLGVGGEKMTPRTQ-QIWSSSDRVALVNVYGPTEVT---IGCSAGRILPDS 344
Query: 236 PGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-----------HV-GRILT 283
C+G P V + GS+ + G ++
Sbjct: 345 -------------------DTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVA 385
Query: 284 RGAHVMLRYWDQ-----FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGR-------RNG 331
G Y ++ F G TGDI +D ++ +GR R
Sbjct: 386 NG------YLNRPDAKGFCDIN----GRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQ 435
Query: 332 RIKSGGENVYPEEVEAVLLQHPGIIGIVVV------GIANARLTEMVVACVRLRESWQWS 385
R+ E EV V+ VV G + L V+ V +
Sbjct: 436 RL----E---LGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFL----VSFVASSGAAVRG 484
Query: 386 ESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPL-TSTGKIRR 440
E + + LRQ C + L + P + PL ++ K
Sbjct: 485 ELRWINENYK----EINNSLRQACEQT-LPAYMVPDFIIPISF-IPLRDTSAKTDA 534
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 7e-20
Identities = 71/406 (17%), Positives = 129/406 (31%), Gaps = 102/406 (25%)
Query: 68 VIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS---SA 124
+ F+SGTTG PK + +H+ I + + + + +L +P LS +
Sbjct: 169 IN--FSSGTTGRPKAIACTHAG-ITRLCLGQSFLAFAPQMRFLVNSP------LSFDAAT 219
Query: 125 MAM---LMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWK 178
+ + L+ G C V + + + S ++ L L
Sbjct: 220 LEIWGALLNGGCCVLNDL-GPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD-----PD 273
Query: 179 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLY--DPTLETP 236
++++L GG L ++ A P+ L++ YG TE + TF +
Sbjct: 274 CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENT---TFTCCHVVTDDDLEE 330
Query: 237 GQLP--QAFGNVTPNSVH---------QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRG 285
+P +A V G E+ G L +G
Sbjct: 331 DDIPIGKAIAGTA---VLLLDEHGQEIAEPDR-AG------EIVAFGAG-------LAQG 373
Query: 286 AHVMLRYWDQ-------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGE 338
Y + F+ P TGD D+ G + +GR +G++K G
Sbjct: 374 ------YRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGY 427
Query: 339 NVYPEEVEAVLLQHPGIIGIVVV---GIANARLTEMVVACVRLRESWQWSESNCDQSSKN 395
+ +E + PGI+ ++ +L + A
Sbjct: 428 RLDLPALEQRFRRQPGILDCALLVRERNGVKQL---LCAWT------------------- 465
Query: 396 KELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI-RR 440
++ Q + L ++ P V PLT+ GK+ R
Sbjct: 466 ----GKADASPQALLRQ-LPTWQRPHACVRVEA-LPLTAHGKLDRA 505
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 1e-13
Identities = 54/332 (16%), Positives = 98/332 (29%), Gaps = 82/332 (24%)
Query: 23 LRWHVSLGSSSSDFVNKRDML---TADILKGYS-LRSLPFTHSW--------------AP 64
+RWH S + S ++ R+ L +K + LR
Sbjct: 31 MRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDLRQFSDISHCLRQEPVANLVPQGLPA 90
Query: 65 EGAVIICFTSGTTGSPKGVVISHS---ALIVQSLAKIAIVGYGEDDVYLHTAPL-CHIGG 120
+ + + GTTG+PK VV + ALI ++ L P HI G
Sbjct: 91 DSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVG 150
Query: 121 LSSAMAMLMVGACHVFI---PKFESKS-------------------ALEAVEQHCVTSLI 158
+ L +G I P++ +S + + L+
Sbjct: 151 AINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLV 210
Query: 159 TVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS-FPKAKLISAYGMT 217
T P ++ +L V + S+ +I GG L + +K + P + ++YG T
Sbjct: 211 TTPPVLRELLKRPEVVLQM--KQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGST 268
Query: 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCV-GKPAPHVELKVCSDGSS 276
G + + +P + V ++
Sbjct: 269 SA-----------------------LGVSRSLLITSESQQVIYDSFSPFITYDVVDSITA 305
Query: 277 H------VGRI----LTRGAHVMLRYWDQFLA 298
G + L+ A R ++ A
Sbjct: 306 QTVEYGERGNVIVTHLSPWA-FYPRVAERDTA 336
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 60/361 (16%), Positives = 114/361 (31%), Gaps = 84/361 (23%)
Query: 53 LRSLPFT-------------HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLA--- 96
L PFT + + I +SGTTG P V + + + +
Sbjct: 65 LSRFPFTTKGDLRDSYPFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVAR 124
Query: 97 KIAIVGYGEDDVYLHTAPL-CHIGGLSSAMAMLMVGACHVFIP--KFESKSALEAVEQHC 153
I G D + GGL + G IP +++ ++ ++
Sbjct: 125 SIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGL--TVIPFGGGQTEKQVQLIQDFR 182
Query: 154 VTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISA 213
++ P+ M +A I + + S++ + G +++ +
Sbjct: 183 PDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDI 241
Query: 214 YGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVE------ 267
YG++E + PG V V G + + + E
Sbjct: 242 YGLSE--------------VMGPG--------VASECVETKDGPTIWEDHFYPEIIDPET 279
Query: 268 LKVCSDGSSHVGRI----LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG-GN 322
+V DG +G + LT+ A ++RY T D+ + G
Sbjct: 280 GEVLPDGE--LGELVFTSLTKEALPIIRYR-----------------TRDLTRLLPGTAR 320
Query: 323 VW-----LVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG---IVVVGIANARLTEMVVA 374
+ GR + + G NV+P ++E LL+ + IV+ L + +
Sbjct: 321 TMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGP--LDVLTLN 378
Query: 375 C 375
Sbjct: 379 V 379
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 76/424 (17%), Positives = 139/424 (32%), Gaps = 91/424 (21%)
Query: 53 LRSLPFT-------------HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLA--- 96
L PF+ + E V + +SGTTG P V + + +
Sbjct: 67 LAKFPFSTKNDLRDNYPFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTAR 126
Query: 97 KIAIVGYGEDDVYLHTAPL-CHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVT 155
I G D + GGL +G V + +++ ++ +
Sbjct: 127 SIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPK 186
Query: 156 SLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYG 215
++ P+ M +L + + S+K + G L E + YG
Sbjct: 187 IILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245
Query: 216 MTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVE------LK 269
++E + PG V V G + + + E +
Sbjct: 246 LSE--------------VMGPG--------VACECVETKDGPVIWEDHFYPEIIDPVTGE 283
Query: 270 VCSDGSSHVGRI----LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSID--DGGNV 323
V DGS G + LT+ A ++RY T D+ ++ +
Sbjct: 284 VLPDGS--QGELVFTSLTKEAMPVIRYR-----------------TRDLTALLPPTARAM 324
Query: 324 WLVGRRNGR----IKSGGENVYPEEVEAVLLQHPGIIG---IVVVGIANARLTEMVVACV 376
+ + GR + G NV+P ++E +++ P + G I + + + + +A V
Sbjct: 325 RRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGH--MDRLDLA-V 381
Query: 377 RLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTG 436
LR E+ + + L + L+ + G + VL P T+TG
Sbjct: 382 ELRS-----EAAASVTDGERAAL--ARELQHRIKTM--VGVS-SGVTVLAAGGIPATATG 431
Query: 437 KIRR 440
K RR
Sbjct: 432 KARR 435
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 9e-11
Identities = 69/365 (18%), Positives = 124/365 (33%), Gaps = 89/365 (24%)
Query: 53 LRSLPFTH--------------SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLA-- 96
+R +PFT V I +SGTTG+P +V S L +
Sbjct: 60 IRKIPFTTKSDMRANYPFGLVAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVA 119
Query: 97 -KIAIVGYGEDDVYLHTAPL-CHIGGLSSAMAMLMVGACHVFIP--KFESKSALEAVEQH 152
+ +VG + DV+ +++ GGL +G + +P SK ++ +
Sbjct: 120 RCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGC--LTVPAAAGNSKRQIKFISDF 177
Query: 153 CVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLIS 212
T+L +P+ LA + + + ++K ++ G E ++ K +
Sbjct: 178 KTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYN 236
Query: 213 AYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVE----- 267
++GMTE + E Q G+ + VE
Sbjct: 237 SFGMTEMNGPGVAF-------ECQEQ----------------NGMHFWEDCYLVEIIDPE 273
Query: 268 -LKVCSDGSSHVGRI----LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGN 322
+ +G +G + L R ++RY T D+ I G
Sbjct: 274 TGEPVPEGE--IGELVLTTLDREMMPLIRYR-----------------TRDLTRILPGKC 314
Query: 323 ---------VWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG---IVVVGIANARLTE 370
+ GR + G N++P +VE +L+Q P + I + + N E
Sbjct: 315 PCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNN--QDE 372
Query: 371 MVVAC 375
M+V
Sbjct: 373 MIVEV 377
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 4e-07
Identities = 46/312 (14%), Positives = 90/312 (28%), Gaps = 90/312 (28%)
Query: 198 MKEATNSFPKAKLISAYGMTETS-SSLTFMTLYDPTLETPGQLPQA-----FGNV-TPNS 250
+++A AK + G+ + + + ++ ++ N +P +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCNSPET 197
Query: 251 VHQP-QGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP--------- 300
V + Q + ++ S S H I R + +KP
Sbjct: 198 VLEMLQKLLY-----QIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 301 SVSTGEVW----------LDTGDIGSIDDGGN-----VWLVGRRNGRIKSGGENVY---- 341
+V + W L T D + L +++
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 342 -------PEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQ-WSESNCDQSS 393
P EV +P + I IA + + + +W W NCD+ +
Sbjct: 312 DCRPQDLPREVLTT---NPRRLSI----IA-ESIRDGL-------ATWDNWKHVNCDKLT 356
Query: 394 KNKEL---LLSSEVLRQHCREKNLTGF----KAP--RLFVLWRKPFPLTSTGKIRRDEVR 444
E +L R+ L+ F P L ++W + + +V
Sbjct: 357 TIIESSLNVLEPAEYRKMFDR--LSVFPPSAHIPTILLSLIW---------FDVIKSDV- 404
Query: 445 REVMSHL--KSL 454
V++ L SL
Sbjct: 405 MVVVNKLHKYSL 416
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.97 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.62 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.59 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.94 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.89 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.78 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 80.73 |
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-65 Score=521.80 Aligned_cols=354 Identities=24% Similarity=0.357 Sum_probs=311.0
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH--HHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS--SAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~--~~~~~l~~G~~~v~~~ 138 (458)
...++|+++++|||||||.||||+++|+++.++.......+++.++|++++.+|++|.+++. .++.+++.|+++++.+
T Consensus 178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 257 (539)
T 1mdb_A 178 EVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP 257 (539)
T ss_dssp CCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred CCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC
Confidence 45689999999999999999999999999998888888888999999999999999999985 5889999999999999
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..+++.|+++++|+++++|+++..+++....... .++++|.+++||+++++++.+.+.+.+ ++++++.||+||
T Consensus 258 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE 334 (539)
T 1mdb_A 258 SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD--DLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAE 334 (539)
T ss_dssp SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC--CCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTT
T ss_pred CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCC--CccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCC
Confidence 99999999999999999999999999999887654332 457999999999999999999999988 799999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCC-ceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPH-VELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
++..++. ..... .....++|+|+++ .+++++|++ .|+.|||+++|++++.||
T Consensus 335 ~~~~~~~--~~~~~--------------------~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY 392 (539)
T 1mdb_A 335 GLVNYTR--LDDPE--------------------EIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGY 392 (539)
T ss_dssp SCEEECC--TTSCH--------------------HHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSC
T ss_pred CcccccC--CCCcH--------------------HhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCcccchhh
Confidence 6532221 10000 0012368999975 479999875 578999999999999999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
|++++.|...|..+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++.+++.+
T Consensus 393 ~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~ 472 (539)
T 1mdb_A 393 YKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERS 472 (539)
T ss_dssp TTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred cCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceE
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
+|++++++. ..+.++++++++++.|+.|++|+.++++ ++||+|++||++|+.|++.+.+.++
T Consensus 473 ~a~vv~~~~-----------------~~~~~~l~~~l~~~~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~~~~~i~ 534 (539)
T 1mdb_A 473 CVFIIPRDE-----------------APKAAELKAFLRERGLAAYKIPDRVEFV-ESFPQTGVGKVSKKALREAISEKLL 534 (539)
T ss_dssp EEEEEESSS-----------------CCCHHHHHHHHHHTTCCGGGSCSEEEEC-SSCCBCTTSCBCHHHHHHHHHHHHH
T ss_pred EEEEEECCC-----------------CCCHHHHHHHHHhCCCCcccCCCEEEEe-ccCCCCCCcCEeHHHHHHHHHHHHh
Confidence 999998632 1346889999998349999999998775 7899999999999999999999999
Q ss_pred cCCCC
Q 012673 453 SLPSN 457 (458)
Q Consensus 453 ~~~~~ 457 (458)
++|++
T Consensus 535 ~~y~~ 539 (539)
T 1mdb_A 535 AGFKK 539 (539)
T ss_dssp TC---
T ss_pred ccccC
Confidence 99974
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-65 Score=519.58 Aligned_cols=347 Identities=26% Similarity=0.344 Sum_probs=304.0
Q ss_pred CCceEEEEeccCCCCCccceecccHHHHHHHHHHHHh---hcCCCCceEEeccchhhHhhhHH-HHHHHhcCceEEecCC
Q 012673 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI---VGYGEDDVYLHTAPLCHIGGLSS-AMAMLMVGACHVFIPK 139 (458)
Q Consensus 64 ~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~ 139 (458)
++|+++++|||||||.||||+++|+++.......... +++.++|++++.+|++|.+++.. ++.++ .|+++++.+.
T Consensus 191 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~ 269 (548)
T 2d1s_A 191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK 269 (548)
T ss_dssp TTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCC
T ss_pred CCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC
Confidence 3899999999999999999999999998877766655 67889999999999999999865 55666 9999999999
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.|+++++|+++++|+++..|.+...... ..++++|.+++||+++++++.+.+.+.|+++++++.||+||+
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~ 347 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNK--YDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGG--SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGG
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccc--ccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccc
Confidence 999999999999999999999999999987543222 245789999999999999999999999988899999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhhh
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy~ 293 (458)
+..++..... . ....++|+|+++++++++|++ .|+.|||+++|++++.|||
T Consensus 348 ~~~~~~~~~~-~----------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~ 404 (548)
T 2d1s_A 348 TSAIIITPEG-D----------------------DKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYV 404 (548)
T ss_dssp SSEEEECCTT-C----------------------CCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEET
T ss_pred cceeeecCcc-c----------------------CCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhc
Confidence 8765442110 0 012368999999999999843 5788999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
++++.+...++.++||+|||+|++++||+++++||+||+||++|++|+|.+||++|.+||+|.+++|++++++.+++.++
T Consensus 405 ~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~ 484 (548)
T 2d1s_A 405 NNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPG 484 (548)
T ss_dssp TCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEE
T ss_pred CChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeE
Confidence 99998888888899999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCe-EEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR-LFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
|+|+++++. ..+.++|++++++ .|+.|++|+ .++++ ++||+|++||++|+.|++++.+.|+
T Consensus 485 a~vv~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~~~i~~v-~~lP~t~~GKi~r~~L~~~~~~~i~ 546 (548)
T 2d1s_A 485 AVVVLESGK----------------NMTEKEVMDYVAS-QVSNAKRLRGGVRFV-DEVPKGLTGKIDGRAIREILKKPVA 546 (548)
T ss_dssp EEEEECTTC----------------CCCHHHHHHHHHT-TSCGGGSCTTCEEEC-SSCCBCTTSCBCHHHHHHHHHSCC-
T ss_pred EEEEEcCCC----------------CCCHHHHHHHHHH-hccccccccccEEEc-cCCCCCCcchhHHHHHHHHHhhhhh
Confidence 999987652 1456789999998 799999999 77765 7899999999999999999999888
Q ss_pred cC
Q 012673 453 SL 454 (458)
Q Consensus 453 ~~ 454 (458)
+|
T Consensus 547 ~~ 548 (548)
T 2d1s_A 547 KM 548 (548)
T ss_dssp --
T ss_pred cC
Confidence 75
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-64 Score=515.89 Aligned_cols=351 Identities=30% Similarity=0.453 Sum_probs=306.0
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHH----hhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEE
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA----IVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHV 135 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v 135 (458)
...++|+++|+|||||||.||||+++|+++......... .+++.++|++++.+|++|.+++ ..++.++..|++++
T Consensus 174 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v 253 (536)
T 3ni2_A 174 DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPIL 253 (536)
T ss_dssp CCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEE
T ss_pred CCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEE
Confidence 457899999999999999999999999999877665543 3467889999999999999998 45678999999999
Q ss_pred ecCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccc
Q 012673 136 FIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYG 215 (458)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG 215 (458)
+.+.+++..+++.|+++++|++.++|+++..+++...... ..++++|.+++||+++++++.+.+++.||++++++.||
T Consensus 254 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 331 (536)
T 3ni2_A 254 IMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK--HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG 331 (536)
T ss_dssp ECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGG--SCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred EcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccccc--CCCccceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence 9999999999999999999999999999999987643332 24578999999999999999999999998999999999
Q ss_pred cccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccc
Q 012673 216 MTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVM 289 (458)
Q Consensus 216 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~ 289 (458)
+||++.+++.+........ ....+++|+|+++++++|+|++ .|+.|||+++|++++
T Consensus 332 ~TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~ 393 (536)
T 3ni2_A 332 MTEAGPVLAMCLAFAKEPF------------------DIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIM 393 (536)
T ss_dssp CGGGSSEEEECGGGSSSCC------------------CCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSC
T ss_pred ccccchhhhcccccCCccc------------------cCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccc
Confidence 9999876654432211100 0122368999999999999954 578899999999999
Q ss_pred hhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCc
Q 012673 290 LRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLT 369 (458)
Q Consensus 290 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 369 (458)
.|||++++.+...++.++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++..+
T Consensus 394 ~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g 473 (536)
T 3ni2_A 394 KGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG 473 (536)
T ss_dssp SEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTE
T ss_pred hhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCC
Confidence 99999999999889899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 370 EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 370 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
+.++|++++.++. ..+.++|++++++ .|+.|++|+.++++ ++||+|++||++|+.|++++++
T Consensus 474 ~~~~a~vv~~~~~----------------~~~~~~l~~~l~~-~l~~~~~p~~i~~v-~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 474 EVPVAFVVKSEKS----------------QATEDEIKQYISK-QVIFYKRIKRVFFI-EAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EEEEEEEEECTTC----------------CCCHHHHHHHHHT-TSCGGGCCSEEEEC-SCCCBCTTSCBCHHHHHTC---
T ss_pred ceeEEEEEecCCC----------------CCCHHHHHHHHHH-hccCCccccEEEEE-ecCCCCCCCCeeHHHHHHHhcc
Confidence 9999999987652 2456889999998 69999999987775 7899999999999999988753
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-65 Score=522.40 Aligned_cols=413 Identities=24% Similarity=0.329 Sum_probs=226.4
Q ss_pred cccccccchhhhhhccccCCCcceEEeeCCCCcc--hhhhhhhhhhcccccCcccccCCCCCCCCCceEEEEeccCCCCC
Q 012673 2 LVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSD--FVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGS 79 (458)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~ 79 (458)
+|+++...+....+ ...+|.++.+++++..... ......++....................++|+++|+|||||||.
T Consensus 126 vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~ 204 (550)
T 3rix_A 126 VFVSKKGLQKILNV-QKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGL 204 (550)
T ss_dssp EEECGGGHHHHHHH-HHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----C
T ss_pred EEEcHHHHHHHHHH-HhhCCCcceEEEEcCCccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccC
Confidence 45555555555444 4456777777776653211 11111111111000000000111112246899999999999999
Q ss_pred ccceecccHHHHHHHHHHHHh---hcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCChHHHHHHHHHhcceE
Q 012673 80 PKGVVISHSALIVQSLAKIAI---VGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTS 156 (458)
Q Consensus 80 PK~v~~sh~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~ 156 (458)
||||+++|+++.......... +++.++|++++.+|++|.+|+...+.++..|+++++.+.+++..+++.|+++++|+
T Consensus 205 PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~ 284 (550)
T 3rix_A 205 PKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQS 284 (550)
T ss_dssp CCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSE
T ss_pred cchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeE
Confidence 999999999998776665544 46788999999999999999988889999999999999999999999999999999
Q ss_pred EeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCC
Q 012673 157 LITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 236 (458)
Q Consensus 157 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~ 236 (458)
++++|+++..|++....... .++++|.+++||+++++++.+.+.+.|+...+++.||+||+++.++......
T Consensus 285 ~~~~P~~~~~l~~~~~~~~~--~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~------ 356 (550)
T 3rix_A 285 ALLVPTLFSFFAKSTLIDKY--DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD------ 356 (550)
T ss_dssp EEECHHHHHHHHHCCGGGGS--CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTC------
T ss_pred EEeCcHHHHHHHhCcccccc--CcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCC------
Confidence 99999999999876543332 4578999999999999999999999995446999999999987655432211
Q ss_pred CCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhhhcCcCCCCcccCCCceEe
Q 012673 237 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLD 310 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~ 310 (458)
...+++|+|+++++++|+|++ .|+.|||+++|++++.|||++++.+...++.+|||+
T Consensus 357 -----------------~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~ 419 (550)
T 3rix_A 357 -----------------DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLH 419 (550)
T ss_dssp -----------------CCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred -----------------CCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCee
Confidence 022379999999999999954 478899999999999999999999998888899999
Q ss_pred cCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecccccccccccc
Q 012673 311 TGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCD 390 (458)
Q Consensus 311 TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~ 390 (458)
|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++.+++.++++++++++.
T Consensus 420 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~-------- 491 (550)
T 3rix_A 420 SGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK-------- 491 (550)
T ss_dssp EEEEEEECTTCCEEEC----------------------------------------------------------------
T ss_pred cCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred ccchhhhhhhhHHHHHHHhhhcccccccCCe-EEEEeeCCCCCCCcccchHHHHHHHHHHHhhcCCCCC
Q 012673 391 QSSKNKELLLSSEVLRQHCREKNLTGFKAPR-LFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458 (458)
Q Consensus 391 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~~~~~~~ 458 (458)
..+.+++++++++ .+++|+.|. .+++ +++||+|++||++|+.|++++.+..+.-+++|
T Consensus 492 --------~~~~~~l~~~~~~-~l~~~~~~~~~i~~-v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~l 550 (550)
T 3rix_A 492 --------TMTEKEIVDYVAS-QVTTAKKLRGGVVF-VDEVPKGLTGKLDARKIREILIKAKKGGKSKL 550 (550)
T ss_dssp ---------------------------------------------------------------------
T ss_pred --------CCCHHHHHHHHHH-hcccccccCCceEE-EeecCCCCCcceeHHHHHHHHHhhccccccCC
Confidence 2456789999988 688887665 4555 48899999999999999999998877666554
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-64 Score=506.91 Aligned_cols=344 Identities=27% Similarity=0.447 Sum_probs=303.6
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 139 (458)
...++|+++|+|||||||.||||+++|+++.++.......+++.++|++++.+|++|.+|+ ...+.+++.|+++++.+.
T Consensus 151 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 230 (503)
T 4fuq_A 151 DRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPK 230 (503)
T ss_dssp CCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSS
T ss_pred CCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCC
Confidence 4568999999999999999999999999999988888889999999999999999999997 456788999999999999
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.++ ++|+++++|+++..+++...... ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||+
T Consensus 231 ~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~ 305 (503)
T 4fuq_A 231 FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTK--ETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTET 305 (503)
T ss_dssp CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCST--TTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTT
T ss_pred CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccc--cchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEccccc
Confidence 99999999998 89999999999999987643322 2357899999999999999999999998 7899999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhhh
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy~ 293 (458)
+...+... . . .....++|+|+++++++++|++ .|+.|||+++|++++.|||
T Consensus 306 ~~~~~~~~--~-~--------------------~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~ 362 (503)
T 4fuq_A 306 NMNTSNPY--D-G--------------------DRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYW 362 (503)
T ss_dssp EECBCCCS--S-S--------------------CCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBT
T ss_pred CcccccCC--C-C--------------------CCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhc
Confidence 86532111 0 0 0122369999999999999943 5788999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
++++.+...|..++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++
T Consensus 363 ~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~ 442 (503)
T 4fuq_A 363 RMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVT 442 (503)
T ss_dssp TCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEE
T ss_pred CChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
+++++.++. ..+.+++++++++ .|+.||+|+.++++ ++||+|++||++|+.|++++.+.
T Consensus 443 a~v~~~~~~----------------~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 443 AVVVRDKGA----------------TIDEAQVLHGLDG-QLAKFKMPKKVIFV-DDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEEECTTC----------------CCCHHHHHHHHBT-TBCGGGCCSEEEEE-SCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EEEEeCCCC----------------CCCHHHHHHHHHh-hcccCCCCCEEEEE-CCCCCCcccceeHHHHHHHHHHh
Confidence 999987652 2456789999998 69999999998875 78999999999999999988653
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-64 Score=512.65 Aligned_cols=349 Identities=24% Similarity=0.354 Sum_probs=268.0
Q ss_pred CCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCChH
Q 012673 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESK 143 (458)
Q Consensus 64 ~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~ 143 (458)
++|+++|+|||||||.||||+++|+++..+.......+++.++|++++.+|++|.+++..++.++..|+++++.+.+++.
T Consensus 179 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~ 258 (549)
T 3g7s_A 179 EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQE 258 (549)
T ss_dssp TTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHH
T ss_pred CCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHH
Confidence 48999999999999999999999999999988888889999999999999999999987788899999999999999999
Q ss_pred HHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhh----CC--CCceeeccccc
Q 012673 144 SALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS----FP--KAKLISAYGMT 217 (458)
Q Consensus 144 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~--~~~i~~~YG~t 217 (458)
.+++.|+++++|+++++|+++..|++..........++++|.+++||+++++++.+.+.+. ++ ++++++.||+|
T Consensus 259 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~T 338 (549)
T 3g7s_A 259 MLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMT 338 (549)
T ss_dssp HHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECG
T ss_pred HHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEecc
Confidence 9999999999999999999999999887665533456799999999999999999999887 52 38999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLR 291 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~g 291 (458)
|++.+++........ ...++|.|+++++++|+|.+ .|+.|||+|+|++++.|
T Consensus 339 E~~~~~~~~~~~~~~----------------------~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~G 396 (549)
T 3g7s_A 339 EACPMVTTNPPLRLD----------------------KSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKG 396 (549)
T ss_dssp GGSSEEEECCGGGGG----------------------GTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSE
T ss_pred ccchhhhcCCccccC----------------------cCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhh
Confidence 998766543321110 12258999999999999943 57899999999999999
Q ss_pred hhcCcCCCCcccC--CCc--eEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCC
Q 012673 292 YWDQFLAKPSVST--GEV--WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANAR 367 (458)
Q Consensus 292 y~~~~~~~~~~~~--~~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 367 (458)
||++++.+...|. .+| ||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++.
T Consensus 397 Y~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~ 476 (549)
T 3g7s_A 397 YWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEE 476 (549)
T ss_dssp ETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC--
T ss_pred hCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccc
Confidence 9999999888763 455 999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHH
Q 012673 368 LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREV 447 (458)
Q Consensus 368 ~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~ 447 (458)
.++.++|+++++++.. ...+.++|++++++ .|+.|++|+.++++ ++||+|++||++|+.|++++
T Consensus 477 ~g~~~~a~vv~~~~~~--------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~~~~ 540 (549)
T 3g7s_A 477 AGEVPKAFIVLKPEYR--------------GKVDEEDIIEWVRE-RISGYKRVREVEFV-EELPRTASGKLLRRLLREKE 540 (549)
T ss_dssp ----CEEEEEECSTTT--------------TSCCHHHHHHHHHT-TCC-----CCCCEE-EECC----------------
T ss_pred cCceEEEEEEECCCcc--------------CcCCHHHHHHHHHH-hccCcccceEEEEe-ccCCCCCCcCEeHHHHHHHh
Confidence 9999999999876521 12457899999998 69999999987775 67999999999999999998
Q ss_pred HHH
Q 012673 448 MSH 450 (458)
Q Consensus 448 ~~~ 450 (458)
.+.
T Consensus 541 ~~~ 543 (549)
T 3g7s_A 541 AEG 543 (549)
T ss_dssp ---
T ss_pred hcc
Confidence 764
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-64 Score=510.89 Aligned_cols=407 Identities=25% Similarity=0.351 Sum_probs=287.3
Q ss_pred cccccccchhhhhhccccCCCcceEEeeCCCCcchhhhhhhhhhcccccCcccccCCCCCCCCCceEEEEeccCCCCCcc
Q 012673 2 LVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPK 81 (458)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK 81 (458)
+|+++.+.+.+..+ ...+|.++.++.+++.... ....++.+..... + ....+++|+++|+|||||||.||
T Consensus 123 vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~-~~~~~~~~~a~i~~TSGTTG~PK 192 (541)
T 1v25_A 123 LLFDPNLLPLVEAI-RGELKTVQHFVVMDEKAPE-----GYLAYEEALGEEA---D-PVRVPERAACGMAYTTGTTGLPK 192 (541)
T ss_dssp EEECGGGHHHHHHH-GGGCSSCCEEEESSSCCCT-----TCEEHHHHCCSCC---C-CCCCCTTSEEEEEEECSSSSSCE
T ss_pred EEEChhHHHHHHHH-HhhCCCccEEEEecCCCCc-----ccccHHHHhhccC---C-cccCCCCCcEEEEECCCCCCCCc
Confidence 45566555554444 3456667666666543211 0111111111110 1 13456799999999999999999
Q ss_pred ceecccHHHHHHHHHH--HHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-CChHHHHHHHHHhcceEEe
Q 012673 82 GVVISHSALIVQSLAK--IAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLI 158 (458)
Q Consensus 82 ~v~~sh~~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~ 158 (458)
||+++|+++..+.... ...+++.++|++++.+|++|.+++..++.+++.|+++++.+. +++..+++.|+++++|+++
T Consensus 193 gV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 272 (541)
T 1v25_A 193 GVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272 (541)
T ss_dssp EEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEE
T ss_pred EeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEe
Confidence 9999999997665542 245678899999999999999998777889999999999874 7999999999999999999
Q ss_pred echHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCC
Q 012673 159 TVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 238 (458)
Q Consensus 159 ~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~ 238 (458)
++|+++..|++....... .++++|.+++||+++++++.+.+ +.+ ++++++.||+||++.+++............
T Consensus 273 ~~P~~~~~l~~~~~~~~~--~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~-- 346 (541)
T 1v25_A 273 GVPTVWLALADYLESTGH--RLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLS-- 346 (541)
T ss_dssp ECHHHHHHHHHHHHHHTC--CCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSC--
T ss_pred cchHHHHHHHhhhhccCC--cchhccEEEECCCCCCHHHHHHH-HHh-CCceeecccccccccceecccccccccccC--
Confidence 999999999987654432 35789999999999999999999 667 899999999999987655432211000000
Q ss_pred CCccccccCCCCCCCCCceEecccCCCceEEEecCCC-------CCccEEEEeccccchhhhcCcCCCCcccCCCceEec
Q 012673 239 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS-------SHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDT 311 (458)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~-------~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~T 311 (458)
.. .......++|+|+++++++|+|++. ++.|||+++|++++.|||++++.|...+..+|||+|
T Consensus 347 -~~---------~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~T 416 (541)
T 1v25_A 347 -EE---------EKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 416 (541)
T ss_dssp -HH---------HHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEE
T ss_pred -cc---------ccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEc
Confidence 00 0000123589999999999999751 368999999999999999999999888888999999
Q ss_pred CceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEeccccccccccccc
Q 012673 312 GDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQ 391 (458)
Q Consensus 312 GD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~ 391 (458)
||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++.+++.++|++++...
T Consensus 417 GDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~---------- 486 (541)
T 1v25_A 417 GDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGE---------- 486 (541)
T ss_dssp EEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------------
T ss_pred CCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999987621
Q ss_pred cchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 392 SSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
..+.+++++++++..|+.|++|+.++++ ++||+|++||++|+.|++++.+.++
T Consensus 487 -------~~~~~~l~~~~~~~~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~~~~~~~ 539 (541)
T 1v25_A 487 -------KPTPEELNEHLLKAGFAKWQLPDAYVFA-EEIPRTSAGKFLKRALREQYKNYYG 539 (541)
T ss_dssp ---------------------CCCTTTSCSBC---------------CCTTHHHHSTTSSC
T ss_pred -------CCCHHHHHHHHHhccCccccCCcEEEEe-CCCCCCCccCeeHHHHHHHHHHhhC
Confidence 1345678888876359999999998775 7899999999999999999876654
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-63 Score=499.10 Aligned_cols=343 Identities=28% Similarity=0.454 Sum_probs=298.4
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcC--CCCceEEeccchhhHhhh-HHHHHHHhcCceEEec
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGY--GEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFI 137 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~ 137 (458)
...++|+++|+|||||||.||||+++|+++..........+++ .++|++++.+|++|.+++ ..++.++..|+++++.
T Consensus 149 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 228 (504)
T 1t5h_X 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV 228 (504)
T ss_dssp CCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEEC
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeC
Confidence 4568999999999999999999999999998888777777888 789999999999999998 5678999999999999
Q ss_pred CCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 138 PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 138 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
+.+++..+++.|+++++|+++++|+++..|++..........++++|.+++||+++++++.+.+.+.| ++++++.||+|
T Consensus 229 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~T 307 (504)
T 1t5h_X 229 EEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTT 307 (504)
T ss_dssp SSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEET
T ss_pred CCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeeccc
Confidence 99999999999999999999999999999988753211222457899999999999999999999999 68999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC--------CCCccEEEEe-cccc
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--------SSHVGRILTR-GAHV 288 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~--------~~~~Gel~v~-g~~~ 288 (458)
|++. .. ... .. ..+++|.|.++++++++|.+ .|+.|||+++ |+++
T Consensus 308 E~~~-~~-~~~-~~-----------------------~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~ 361 (504)
T 1t5h_X 308 EAMN-SL-YMR-QP-----------------------KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSA 361 (504)
T ss_dssp TTEE-EE-EEE-SC-----------------------SSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTS
T ss_pred cccc-cc-ccc-CC-----------------------CCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCcee
Confidence 9932 22 111 10 12258999999999999864 3678999999 8999
Q ss_pred chhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCC
Q 012673 289 MLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARL 368 (458)
Q Consensus 289 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 368 (458)
+.|||++++.+.+.+ .+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++.+
T Consensus 362 ~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~ 440 (504)
T 1t5h_X 362 FVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRW 440 (504)
T ss_dssp CCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSS
T ss_pred eceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCC
Confidence 999999999888877 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHH
Q 012673 369 TEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448 (458)
Q Consensus 369 ~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~ 448 (458)
++.++|+|+++++. ..+.+++++++++..|+.||+|+.++++ ++||+|++||++|+.|++++.
T Consensus 441 g~~~~a~vv~~~~~----------------~~~~~~l~~~~~~~~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 441 GQSVTACVVPRLGE----------------TLSADALDTFCRSSELADFKRPKRYFIL-DQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp SEEEEEEEEECTTC----------------CCCHHHHHHHHHTSSCCGGGSCSEEEEC-SCCCBCTTSCBCHHHHHHHHC
T ss_pred CcEEEEEEEecCCc----------------CcCHHHHHHHHhhccCcccccceEEEEh-hhCCCCCCCCEeHHHHHHHhc
Confidence 99999999987652 1456789999986359999999998875 789999999999999999874
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-63 Score=499.33 Aligned_cols=348 Identities=24% Similarity=0.449 Sum_probs=303.1
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
....++|+++|+|||||||.||||+++|+++..+.......+++.++|++++.+|++|.+++...+.+++.|+++++.+.
T Consensus 165 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~ 244 (517)
T 3r44_A 165 VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQ 244 (517)
T ss_dssp CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCC
Confidence 34578999999999999999999999999999888888888999999999999999999999776666669999999999
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.|+++++|++.++|+++..|.+....... ..+++|.+++||+++++++.+.+.+. ++++++.||+||+
T Consensus 245 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~ 320 (517)
T 3r44_A 245 FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAEL--DAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTES 320 (517)
T ss_dssp CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHC--CCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGG
T ss_pred CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccC--CCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeeccccc
Confidence 9999999999999999999999999999887654433 45789999999999999999999886 7999999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC----CCCccEEEEeccccchhhhcC
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SSHVGRILTRGAHVMLRYWDQ 295 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~----~~~~Gel~v~g~~~~~gy~~~ 295 (458)
+..++........ ....++|+|+++++++++|++ +...|||+++|++++.|||++
T Consensus 321 ~~~~~~~~~~~~~---------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v~g~~v~~GY~~~ 379 (517)
T 3r44_A 321 CGGGTLLLSEDAL---------------------RKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNR 379 (517)
T ss_dssp TTCEEEECGGGTT---------------------TTTTCCBEECTTEEEEEECTTSCEESSEEEEEEEEETTSCSEETTC
T ss_pred ccceeecCCcccc---------------------ccCCCCCcCCCCeEEEEECCCCCCCCCCCeEEEEeCcchhhhhCCC
Confidence 8766554322111 022358999999999999876 222799999999999999999
Q ss_pred cCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEE
Q 012673 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVAC 375 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~ 375 (458)
++.+...| .++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++.+++.++++
T Consensus 380 p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~ 458 (517)
T 3r44_A 380 PEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAI 458 (517)
T ss_dssp HHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEE
Confidence 99888877 57999999999999999999999999999999999999999999999999999999999999989988888
Q ss_pred EEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 376 VRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 376 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
+ +.++. ..+.++|++++++ .|+.|++|+.++++ ++||+|++||++|+.|++++.+.+.
T Consensus 459 v-~~~~~----------------~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 459 V-VADQN----------------EVSEQQIVEYCGT-RLARYKLPKKVIFA-EAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp E-EECTT----------------TCCHHHHHHHHHH-HSCGGGSCSEEEEC-SCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred E-ECCCC----------------CCCHHHHHHHHHH-hCCCCCCCCEEEEE-CCCCCCCCcCccHHHHHHHHHhhcc
Confidence 8 44331 2456889999998 69999999998775 7899999999999999999987654
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-62 Score=496.77 Aligned_cols=340 Identities=28% Similarity=0.420 Sum_probs=286.9
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~ 140 (458)
...++|+++|+|||||||.||||+++|+++..........+++.++|++++.+|++|.+|+..++.+++.|+++++.+.+
T Consensus 159 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~ 238 (501)
T 3ipl_A 159 SFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKF 238 (501)
T ss_dssp CCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSC
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCCC
Confidence 45789999999999999999999999999998888888889999999999999999999998889999999999999999
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.|+++++|+++++|+++..|++..... ..++|.+++||+++++++.+.+.+ + ++++++.||+||++
T Consensus 239 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----~~~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~~YG~TE~~ 311 (501)
T 3ipl_A 239 NAEQILTMIKNERITHISLVPQTLNWLMQQGLHE-----PYNLQKILLGGAKLSATMIETALQ-Y-NLPIYNSFGMTETC 311 (501)
T ss_dssp CHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS-----CTTCCEEEECSSCCCHHHHHHHHH-T-TCCEEEEEEEGGGT
T ss_pred CHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC-----cCcccEEEEeCCCCCHHHHHHHHH-h-CCCEeccccccccc
Confidence 9999999999999999999999999998764221 237999999999999999999987 4 89999999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEeccccchhhhcCcCCCC
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 300 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~~~~~gy~~~~~~~~ 300 (458)
+.++........ ....++|.|+++++++++|++.++.|||+++|+.++.|||++++.+.
T Consensus 312 ~~~~~~~~~~~~---------------------~~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~g~~~~~gY~~~~~~t~ 370 (501)
T 3ipl_A 312 SQFLTATPEMLH---------------------ARPDTVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPTDLTG 370 (501)
T ss_dssp EEEEEECHHHHH---------------------HCTTCCBEECTTCEEEEESCCSSCCEEEEEESTTSCSCCSBSTTCCC
T ss_pred cceeecCccccc---------------------cCCCCCCCCCCCcEEEEecCCCCCccEEEEeccchhhhhCcChhhcc
Confidence 654433221100 01225899999999999999999999999999999999999999888
Q ss_pred cccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecc
Q 012673 301 SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRE 380 (458)
Q Consensus 301 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~ 380 (458)
. + .+|||+|||+|++++||+++++||+||+||++|++|+|.+||++|.+||+|.+++|++.+++.+++.++++++...
T Consensus 371 ~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~ 448 (501)
T 3ipl_A 371 T-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSES 448 (501)
T ss_dssp S-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred h-h-cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCC
Confidence 7 3 6799999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 381 SWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
. .+.++|++++++ .|+.|++|+.++++ ++||+|++||++|++|++...++
T Consensus 449 ~------------------~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 449 D------------------ISKAQLIAYLSK-HLAKYKVPKHFEKV-DTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp C------------------CCHHHHHHHHHH-HSCGGGSCSEEEEC-SSCC-------------------
T ss_pred C------------------CCHHHHHHHHHh-hCccccCCCEEEEe-cccCCCCCCCEeHHHHhhccccc
Confidence 3 457889999998 69999999998775 78999999999999999987654
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-62 Score=504.90 Aligned_cols=346 Identities=24% Similarity=0.340 Sum_probs=282.1
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEec--
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFI-- 137 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~-- 137 (458)
...++|+++|+|||||||.||||+++|.++...........++.+++++++.+|++|..+++ .++.++..|+++++.
T Consensus 221 ~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 300 (580)
T 3etc_A 221 STKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDY 300 (580)
T ss_dssp SCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEEC
T ss_pred CCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecC
Confidence 45789999999999999999999999999887777666677889999999999999988775 467889999999887
Q ss_pred CCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 138 PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 138 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
..+++..+++.|+++++|+++++|+++..|.+.. .....++++|.+++||+++++++.+++.+.+ ++++++.||+|
T Consensus 301 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~T 376 (580)
T 3etc_A 301 DRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED---LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQT 376 (580)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC---C---CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCT
T ss_pred CCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc---cccCCCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccc
Confidence 5689999999999999999999999999987641 1122457899999999999999999999988 89999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEec-----cc
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRG-----AH 287 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g-----~~ 287 (458)
|++..++...... ...+++|+|+++++++|+|++ .|+.|||+++| ++
T Consensus 377 E~~~~~~~~~~~~-----------------------~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~ 433 (580)
T 3etc_A 377 ETVVTIATFPWME-----------------------PKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVG 433 (580)
T ss_dssp TSSCCEECCTTSC-----------------------CCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTT
T ss_pred cccceeecCCCCC-----------------------CCCCccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCe
Confidence 9986554322110 122369999999999999986 57899999997 78
Q ss_pred cchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCC
Q 012673 288 VMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANAR 367 (458)
Q Consensus 288 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 367 (458)
++.|||++++.+.+.+. +|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++.
T Consensus 434 ~~~gY~~~p~~t~~~f~-~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~ 512 (580)
T 3etc_A 434 LFVHYGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPV 512 (580)
T ss_dssp CCCEETTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred eeccccCCHhHHHhhcC-CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccC
Confidence 99999999999888874 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHH
Q 012673 368 LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREV 447 (458)
Q Consensus 368 ~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~ 447 (458)
.++.++|+|++.++.... ....++|++++++ .|++|++|+.++++ ++||+|++||++|+.||+++
T Consensus 513 ~g~~~~a~vv~~~~~~~~-------------~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t~sGKi~R~~Lr~~~ 577 (580)
T 3etc_A 513 RGQVIKATIVLTKDYTPS-------------DSLKNELQDHVKN-VTAPYKYPRIIEFV-PELPKTISGKIRRVEIRDKD 577 (580)
T ss_dssp TEEEEEEEEEECTTCCCC-------------HHHHHHHHHHHHH-HSCGGGCCSEEEEE-CC------------------
T ss_pred CCcEEEEEEEECCCCCCC-------------HHHHHHHHHHHHh-hCCCccCCeEEEEe-CCCCCCCCcCCcHHHHHhHh
Confidence 999999999998763211 1235789999998 69999999987775 78999999999999999987
Q ss_pred HH
Q 012673 448 MS 449 (458)
Q Consensus 448 ~~ 449 (458)
.+
T Consensus 578 ~~ 579 (580)
T 3etc_A 578 QS 579 (580)
T ss_dssp --
T ss_pred hc
Confidence 65
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-62 Score=497.05 Aligned_cols=355 Identities=22% Similarity=0.284 Sum_probs=307.3
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
...++|+++|+|||||||.||||+++|+++..........+++.++|++++.+|++|.+++..++.++..|+++++.+.
T Consensus 139 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 218 (511)
T 3e7w_A 139 WVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKD 218 (511)
T ss_dssp SCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHH
T ss_pred cCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChh
Confidence 4568999999999999999999999999999888888888999999999999999999999889999999999999876
Q ss_pred --CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 140 --FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 140 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
+++..+++.|+++++|+++++|+++..++....... ..++++|.+++||+++++++.+.+.+.|+++++++.||+|
T Consensus 219 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~T 296 (511)
T 3e7w_A 219 AVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQ--DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPT 296 (511)
T ss_dssp HHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCST--TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCG
T ss_pred hhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccc--ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccc
Confidence 689999999999999999999999999887543222 2357899999999999999999999999899999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++..++.......... .....++|+|+++++++|+|++ .|+.|||+++|++++.||
T Consensus 297 E~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY 358 (511)
T 3e7w_A 297 EATVAVTSVEITNDVIS------------------RSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGY 358 (511)
T ss_dssp GGSSCSEEEEECHHHHT------------------TCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCB
T ss_pred hheeeeeEEeccccccc------------------cCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecCccChhh
Confidence 99876665433211100 0122358999999999999986 678899999999999999
Q ss_pred hcCcCCCCccc---CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCc
Q 012673 293 WDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLT 369 (458)
Q Consensus 293 ~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 369 (458)
|++++.+...+ ++..||+|||+|++ +||+++++||+||+||++|++|+|.+||++|.+||+|.+++|++++++..+
T Consensus 359 ~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~ 437 (511)
T 3e7w_A 359 LGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTV 437 (511)
T ss_dssp TTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSC
T ss_pred CCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCc
Confidence 99998888776 23348999999999 589999999999999999999999999999999999999999999988889
Q ss_pred ceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 370 EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 370 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
+.+++++++.++.... .....+++++++++ .|+.|++|+.++++ ++||+|++||++|+.|++.+.+
T Consensus 438 ~~~~a~vv~~~~~~~~------------~~~~~~~l~~~l~~-~L~~~~~P~~~~~v-~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 438 EYLIAAIVPEEHEFEK------------EFQLTSAIKKELAA-SLPAYMIPRKFIYQ-DHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp CEEEEEEEECCCCCSS------------HHHHHHHHHHHHHH-HSCGGGSCSEEEEC-SCCCBCTTSCBCHHHHHHHHHH
T ss_pred eEEEEEEEeccccccc------------hhhHHHHHHHHHHh-hCchhhCCeeEEEe-ccCCCCCCcCccHHHHHhHHhh
Confidence 9999999987652110 11225789999998 69999999998775 7899999999999999999886
Q ss_pred H
Q 012673 450 H 450 (458)
Q Consensus 450 ~ 450 (458)
+
T Consensus 504 ~ 504 (511)
T 3e7w_A 504 R 504 (511)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-64 Score=512.25 Aligned_cols=347 Identities=25% Similarity=0.390 Sum_probs=214.3
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH--HHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS--SAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~--~~~~~l~~G~~~v~~~ 138 (458)
...++|+++|+|||||||.||||+++|+++..+.......+++.++|++++.+|++|.+++. .++.++..|+++++.+
T Consensus 187 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 187 STPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp CCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred cCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 45689999999999999999999999999999998888899999999999999999998875 5889999999999999
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..+++.|+++++|+++++|+++..+++....... .++++|.+++||+++++++.+.+.+.| ++++++.||+||
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE 343 (544)
T 3o83_A 267 NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKD--QIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAE 343 (544)
T ss_dssp SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHH--HHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTT
T ss_pred CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccc--cCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeecccc
Confidence 99999999999999999999999999999887654332 346899999999999999999999998 899999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccC-CCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
++..++.... .. .....++|+|+ ++++++|+|++ .|+.|||+++|++++.||
T Consensus 344 ~~~~~~~~~~--~~--------------------~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY 401 (544)
T 3o83_A 344 GLVNYTRLDD--SD--------------------EQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGY 401 (544)
T ss_dssp SCEEECCTTS--CH--------------------HHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSCC
T ss_pred ccceeecCCC--ch--------------------hhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEecCCcchhh
Confidence 8743322110 00 00123589996 89999999975 688899999999999999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
|++++.+...|..++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++..++.+
T Consensus 402 ~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~ 481 (544)
T 3o83_A 402 YQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKS 481 (544)
T ss_dssp TTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC------------------------------------------
T ss_pred cCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceE
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
+|++++.+. ..+.+++++++++..|+.|++|+.++++ ++||+|++||++|+.|++++.+.
T Consensus 482 ~a~vv~~~~-----------------~~~~~~l~~~~~~~~l~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 482 CAFIVSRNP-----------------ELKAVVLRRHLMELGIAQYKLPDQIKLI-ESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEeCCC-----------------CCCHHHHHHHHHhCCCCcccCCcEEEEe-ccCCCCCCCCCcHHHHHHHHhhc
Confidence 999987653 1346778888887469999999988775 78999999999999999998754
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-62 Score=497.04 Aligned_cols=344 Identities=27% Similarity=0.413 Sum_probs=287.0
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 139 (458)
..+++|+++|+|||||||.||||+++|+++..........+++.++|++++.+|++|.+|+ ..++.++..|+++++.+.
T Consensus 151 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 230 (505)
T 3nyq_A 151 GADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGR 230 (505)
T ss_dssp CCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSS
T ss_pred CCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCC
Confidence 4568999999999999999999999999999988888888999999999999999999987 468899999999999999
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhc-cccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK-TWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
+++..+++.+ ++++|+++++|+++..+++...... ....++++|.+++||+++++++.+.+.+.+ ++++++.||+||
T Consensus 231 ~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE 308 (505)
T 3nyq_A 231 FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTE 308 (505)
T ss_dssp CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETT
T ss_pred CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhh
Confidence 9999999999 8899999999999999987543211 111235789999999999999999999988 899999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC--------CCCccEEEEeccccch
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--------SSHVGRILTRGAHVML 290 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~--------~~~~Gel~v~g~~~~~ 290 (458)
++..++...... ....++|+|+++++++++|++ .|++|||+++|++++.
T Consensus 309 ~~~~~~~~~~~~-----------------------~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~ 365 (505)
T 3nyq_A 309 TLMNTSVRADGE-----------------------PRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFT 365 (505)
T ss_dssp TEEEEECCTTSC-----------------------CCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCC
T ss_pred cccccccCCCCC-----------------------CCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhh
Confidence 986544321110 012358999999999999975 2688999999999999
Q ss_pred hhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeec-cceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCc
Q 012673 291 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRR-NGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLT 369 (458)
Q Consensus 291 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 369 (458)
|||++++.+...|..++||+|||+|++++||+++++||+ ||+||++|++|+|.|||++|.+||+|.+++|++.+++.++
T Consensus 366 GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g 445 (505)
T 3nyq_A 366 EYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLG 445 (505)
T ss_dssp EETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTE
T ss_pred hhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCC
Confidence 999999999999988999999999999999999999997 5999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHH
Q 012673 370 EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446 (458)
Q Consensus 370 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~ 446 (458)
+.++|++++.++. ...+.++|++++++ .|+.||+|+.++++ ++||+|++||++|++|++.
T Consensus 446 ~~l~a~vv~~~~~---------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 446 ERIVAWIVPADPA---------------APPALGTLADHVAA-RLAPHKRPRVVRYL-DAVPRNDMGKIMKRALNRD 505 (505)
T ss_dssp EEEEEEEEESSTT---------------SCCCHHHHHHHHHH-HTCGGGSCSEEEEC-SCCCC--------------
T ss_pred cEEEEEEEECCCC---------------CCCCHHHHHHHHHh-hCCCCcCccEEEEE-CCCCCCCCcCeeHHhhccC
Confidence 9999999987531 11356789999998 69999999988775 7899999999999999873
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-62 Score=508.23 Aligned_cols=357 Identities=20% Similarity=0.248 Sum_probs=301.7
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHH-HHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSL-AKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~ 138 (458)
...++|+++|+|||||||.||||+++|++++.+.. .....++++++|++++.+|++|++|+ ..++.+++.|+++++.+
T Consensus 252 ~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~ 331 (652)
T 1pg4_A 252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 331 (652)
T ss_dssp CEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEEC
T ss_pred ccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEEC
Confidence 34689999999999999999999999999876653 44566889999999999999999998 66889999999999987
Q ss_pred C----CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCC--CCceee
Q 012673 139 K----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP--KAKLIS 212 (458)
Q Consensus 139 ~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~--~~~i~~ 212 (458)
. +++..+++.|+++++|+++++|+++..|++.........++++||.+++||+++++++++++.+.++ ++++++
T Consensus 332 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~ 411 (652)
T 1pg4_A 332 GVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD 411 (652)
T ss_dssp SCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEE
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEc
Confidence 4 6899999999999999999999999999876543222234679999999999999999999999883 289999
Q ss_pred ccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEec--
Q 012673 213 AYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRG-- 285 (458)
Q Consensus 213 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g-- 285 (458)
.||+||++..++...... . ....+++|+|+++++++|+|++ .|+.|||+++|
T Consensus 412 ~YG~TE~~~~~~~~~~~~-~--------------------~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~ 470 (652)
T 1pg4_A 412 TWWQTETGGFMITPLPGA-I--------------------ELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSW 470 (652)
T ss_dssp EBCCGGGSSCSBCCCTTT-C--------------------CBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCC
T ss_pred cccCcccccceecCCCCC-c--------------------CccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCC
Confidence 999999986554321110 0 0122369999999999999976 46789999999
Q ss_pred cccchhhhcCcCCCCccc--CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEee
Q 012673 286 AHVMLRYWDQFLAKPSVS--TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 363 (458)
Q Consensus 286 ~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 363 (458)
|+++.|||++++.+...+ ..+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|+++
T Consensus 471 p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~ 550 (652)
T 1pg4_A 471 PGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550 (652)
T ss_dssp TTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEE
T ss_pred CchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEE
Confidence 789999999987665543 247899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHH
Q 012673 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 443 (458)
Q Consensus 364 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l 443 (458)
+++..++.++|+|+++++.... ....++|++++++ .|++|++|+.++++ ++||+|++||++|+.|
T Consensus 551 ~~~~~g~~l~a~Vv~~~~~~~~-------------~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~T~sGKi~R~~L 615 (652)
T 1pg4_A 551 PHAIKGQAIYAYVTLNHGEEPS-------------PELYAEVRNWVRK-EIGPLATPDVLHWT-DSLPKTRSGKIMRRIL 615 (652)
T ss_dssp EETTTEEEEEEEEEECTTCCCC-------------HHHHHHHHHHHHH-HTCGGGCCSEEEEC-SCCCBCTTSCBCHHHH
T ss_pred EcCCCCeEEEEEEEECCCCCCC-------------HHHHHHHHHHHHH-hCCCCcCCeEEEEc-CCCCCCCCccchHHHH
Confidence 9988899999999998652100 0125789999998 69999999998775 7899999999999999
Q ss_pred HHHHHHHhhc
Q 012673 444 RREVMSHLKS 453 (458)
Q Consensus 444 ~~~~~~~~~~ 453 (458)
++.+.+.++.
T Consensus 616 ~~~~~~~~~~ 625 (652)
T 1pg4_A 616 RKIAAGDTSN 625 (652)
T ss_dssp HHHHHTC---
T ss_pred HHHHhCCCCC
Confidence 9999876543
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-62 Score=497.98 Aligned_cols=356 Identities=24% Similarity=0.325 Sum_probs=304.3
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
....++|+++|+|||||||.||||+++|+++.+........+++.++|++++.+|++|.+++..++.+++.|+++++.+.
T Consensus 139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 34578999999999999999999999999999988888888999999999999999999999889999999999999886
Q ss_pred ---CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 140 ---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 140 ---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
+++..+++.|+++++|++.++|+++..++....... ..++++|.+++||+++++++.+.+.+.|+++++++.||+
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 296 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSE--SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGP 296 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCST--TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccc--hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCccc
Confidence 789999999999999999999999998876543322 245789999999999999999999999989999999999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchh
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLR 291 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~g 291 (458)
||++..++.......... .....++|.|+++++++++|++ .|+.|||+++|++++.|
T Consensus 297 TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~G 358 (512)
T 3fce_A 297 TEATVAVTGIHVTEEVLD------------------QYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVG 358 (512)
T ss_dssp GGGSSCSEEEECCHHHHH------------------HCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSC
T ss_pred ChhhhheeeEEecccccc------------------ccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEeccccChh
Confidence 999876654332111000 0012258999999999999976 58899999999999999
Q ss_pred hhcCcCCCCccc---CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCC
Q 012673 292 YWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARL 368 (458)
Q Consensus 292 y~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 368 (458)
||++++.+...| ++++||+|||+|++ +||+++++||+||+||++|++|+|.+||++|.+||+|.+++|++++++..
T Consensus 359 Y~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~ 437 (512)
T 3fce_A 359 YLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEK 437 (512)
T ss_dssp BTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTE
T ss_pred hcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCC
Confidence 999998888766 46789999999999 79999999999999999999999999999999999999999999999888
Q ss_pred cceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHH
Q 012673 369 TEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448 (458)
Q Consensus 369 ~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~ 448 (458)
++.++|++++.++.... .....+++++++++ .|+.|++|+.++++ ++||+|++||++|+.|++.+.
T Consensus 438 ~~~~~a~vv~~~~~~~~------------~~~~~~~l~~~l~~-~L~~~~~P~~~~~~-~~lP~t~~GKi~R~~L~~~~~ 503 (512)
T 3fce_A 438 YDYLLAVVVPGEHSFEK------------EFKLTSAIKKELNE-RLPNYMIPRKFMYQ-SSIPMTPNGKVDRKKLLSEVT 503 (512)
T ss_dssp EEEEEEEEEECSCCCSS------------HHHHHHHHHHHHHT-TSCGGGSCSEEEEC-SCCCBCTTSSBCHHHHHHHHH
T ss_pred ceEEEEEEecCCccccc------------hhhhHHHHHHHHHh-hCchhcCCeEEEEe-cccCCCCCcChHHHHHHhhhh
Confidence 99999999987652100 11234679999998 69999999998765 789999999999999999987
Q ss_pred HH
Q 012673 449 SH 450 (458)
Q Consensus 449 ~~ 450 (458)
+.
T Consensus 504 ~~ 505 (512)
T 3fce_A 504 AL 505 (512)
T ss_dssp C-
T ss_pred hc
Confidence 64
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-61 Score=500.86 Aligned_cols=352 Identities=23% Similarity=0.356 Sum_probs=311.5
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH--HHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS--SAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~--~~~~~l~~G~~~v~~~ 138 (458)
...++|+|||+|||||||.||||+++|+++.+........+++.++|++++.+|++|.+++. .++.+++.|+++++.+
T Consensus 180 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~ 259 (617)
T 3rg2_A 180 PSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA 259 (617)
T ss_dssp CCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred CCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence 34679999999999999999999999999999988888899999999999999999998874 5889999999999999
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..+++.|+++++|++.++|+++..+++..........++++|.+++||+++++++.+.+.+.+ ++++++.||+||
T Consensus 260 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE 338 (617)
T 3rg2_A 260 DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAE 338 (617)
T ss_dssp SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETT
T ss_pred CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEEeccCc
Confidence 8999999999999999999999999999998766544433567899999999999999999999998 899999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccC-CCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
++..++.... ... ....++|.|+ ++.++.++|++ .|++|||+++|++++.||
T Consensus 339 ~~~~~~~~~~--~~~--------------------~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY 396 (617)
T 3rg2_A 339 GLVNYTRLDD--SAE--------------------KIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGY 396 (617)
T ss_dssp EEEEECCTTS--CHH--------------------HHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCC
T ss_pred ceeecccCCC--ccc--------------------ccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCccccchh
Confidence 8754332110 000 0112489997 78899999976 688999999999999999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
|++++.|.+.|..++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.+
T Consensus 397 ~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~ 476 (617)
T 3rg2_A 397 YKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKS 476 (617)
T ss_dssp TTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred cCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
++++++.+. .+.++++++++++.|+.||+|+.++++ ++||+|++||++|++|++.+.....
T Consensus 477 ~a~vv~~~~------------------~~~~~l~~~l~~~~lp~~~vP~~~~~v-~~lP~t~~GKidR~~L~~~~~~~~~ 537 (617)
T 3rg2_A 477 CAYLVVKEP------------------LRAVQVRRFLREQGIAEFKLPDRVECV-DSLPLTAVGKVDKKQLRQWLASRAS 537 (617)
T ss_dssp EEEEEESSC------------------CCHHHHHHHHHTTTCCGGGSCSEEEEC-SCCCBCTTSSBCHHHHHHHHHHHHH
T ss_pred EEEEEeCCC------------------CCHHHHHHHHHhCCCccccCCcEEEEe-cccCCCCCCCCcHHHHHHHHhcccc
Confidence 999998764 456789999987569999999998875 7899999999999999999887665
Q ss_pred cC
Q 012673 453 SL 454 (458)
Q Consensus 453 ~~ 454 (458)
.-
T Consensus 538 ~~ 539 (617)
T 3rg2_A 538 AG 539 (617)
T ss_dssp HS
T ss_pred cc
Confidence 43
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-61 Score=496.56 Aligned_cols=399 Identities=22% Similarity=0.265 Sum_probs=315.6
Q ss_pred cccccccchhhhhhccccCCCcceEEeeCCCCc-chhhhhhhhhhcccccCcccccCCCCCCCCCceEEEEeccCCCCCc
Q 012673 2 LVTDESSDSWYLELQHTAIPSLRWHVSLGSSSS-DFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSP 80 (458)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~P 80 (458)
+|+++.+.+.+..+ ..++|.++.++.+++... ......+++. ... .. .......++|+++|+|||||||.|
T Consensus 150 vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~-~~~~~~~~~d~a~i~~TSGTTG~P 221 (570)
T 3c5e_A 150 IVAGDEVIQEVDTV-ASECPSLRIKLLVSEKSCDGWLNFKKLLN-----EAS-TT-HHCVETGSQEASAIYFTSGTSGLP 221 (570)
T ss_dssp EEEETTTHHHHHHH-GGGCTTCCEEEEESSSCCTTSEEHHHHHH-----HSC-SC-CCCCCCBTTSEEEEEECCCSSSSC
T ss_pred EEechHHHHHHHHH-hhcCCceeEEEEecccCccccccHHHHhh-----ccc-cc-ccccCCCCCCcEEEEECCCCCCCC
Confidence 45555555554444 345677777776654221 1111111111 110 11 111235689999999999999999
Q ss_pred cceecccHHHHH-HHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEecC--CCChHHHHHHHHHhcceE
Q 012673 81 KGVVISHSALIV-QSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIP--KFESKSALEAVEQHCVTS 156 (458)
Q Consensus 81 K~v~~sh~~~~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~ 156 (458)
|||+++|+.+.. ..... ..++++++|++++.+|++|.+++. .++.++..|+++++.+ .+++..+++.|+++++|+
T Consensus 222 KgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~ 300 (570)
T 3c5e_A 222 KMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKS 300 (570)
T ss_dssp CEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCE
T ss_pred CEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeE
Confidence 999999994332 33333 667889999999999999999985 6788999999999886 689999999999999999
Q ss_pred EeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCC
Q 012673 157 LITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 236 (458)
Q Consensus 157 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~ 236 (458)
++++|+++..|++.. .....++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..++.... ..
T Consensus 301 ~~~~P~~~~~l~~~~---~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~---~~--- 370 (570)
T 3c5e_A 301 MMGAPIVYRMLLQQD---LSSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSKT---MK--- 370 (570)
T ss_dssp EEECHHHHHHHHTSC---TTTCCCTTCCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCTT---SC---
T ss_pred EeccHHHHHHHHhcc---ccccccccceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCcc---cc---
Confidence 999999999998651 1112357899999999999999999999988 8999999999999854432210 00
Q ss_pred CCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEe-----ccccchhhhcCcCCCCcccCCC
Q 012673 237 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTR-----GAHVMLRYWDQFLAKPSVSTGE 306 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~-----g~~~~~gy~~~~~~~~~~~~~~ 306 (458)
...+++|+|+++++++|+|++ .|+.|||+++ |++++.|||++++.+...+. +
T Consensus 371 -----------------~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~ 432 (570)
T 3c5e_A 371 -----------------IKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-G 432 (570)
T ss_dssp -----------------CCTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-T
T ss_pred -----------------cCCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhc-C
Confidence 012369999999999999976 5789999999 99999999999988887774 7
Q ss_pred ceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecccccccc
Q 012673 307 VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSE 386 (458)
Q Consensus 307 ~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~ 386 (458)
+||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++|+|++.++....
T Consensus 433 ~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~- 511 (570)
T 3c5e_A 433 DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSH- 511 (570)
T ss_dssp TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTS-
T ss_pred CccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCc-
Confidence 8999999999999999999999999999999999999999999999999999999999998899999999987652100
Q ss_pred ccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 387 SNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
......++|++++++ .|+.|++|+.++++ ++||+|++||++|+.|++.+...
T Consensus 512 ----------~~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 512 ----------DPEQLTKELQQHVKS-VTAPYKYPRKIEFV-LNLPKTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp ----------CHHHHHHHHHHHHHH-HSCGGGSCSEEEEE-SCCCBCTTCCBCHHHHHHHHTC-
T ss_pred ----------chHHHHHHHHHHHHh-hCccccCCcEEEEe-ccCCCCCCcCCcHHHHHHHHHhh
Confidence 011236789999988 79999999998775 78999999999999999987543
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-62 Score=498.76 Aligned_cols=343 Identities=26% Similarity=0.445 Sum_probs=207.6
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
....++|+++|+|||||||.||||+++|+++..........+++.++|++++.+|++|.+++...+.++..|++.++...
T Consensus 155 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~ 234 (509)
T 3ivr_A 155 PEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAK 234 (509)
T ss_dssp CCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecc
Confidence 45678999999999999999999999999999888888889999999999999999999999887777777777777778
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.|+++++|+++++|+++..|++.... ..++++|.++.+|++ ++.+.+.+.++++++++.||+||+
T Consensus 235 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~ 307 (509)
T 3ivr_A 235 FDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAP----AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSET 307 (509)
T ss_dssp CCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCG----GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGG
T ss_pred cCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccc----cchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCcccc
Confidence 9999999999999999999999999999876521 234689999999987 888899999989999999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhc
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWD 294 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~ 294 (458)
+.+++....... ..++|+|+++++++++|++ .|+.|||+++|++++.|||+
T Consensus 308 ~~~~~~~~~~~~------------------------~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~ 363 (509)
T 3ivr_A 308 SGLSTFAPYRDR------------------------PKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWN 363 (509)
T ss_dssp TEEEEEEEGGGS------------------------TTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETT
T ss_pred ccccccCccccC------------------------CCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccC
Confidence 876665433211 0138999999999999976 57889999999999999999
Q ss_pred CcCCCCcccCCCceEecCceEEEeCCCcEEEEeec--cceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 295 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRR--NGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
+++.+...|. ++||+|||+|++++||+++++||+ +|+||++|++|+|.+||++|.+||+|.+++|++++++.+++.+
T Consensus 364 ~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~ 442 (509)
T 3ivr_A 364 NAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAI 442 (509)
T ss_dssp CHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC---------------------------------------------
T ss_pred CHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEE
Confidence 9998888775 899999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
++++++.++. ..+.++|++++++ .|+.|++|+.++++ ++||+|++||++|++||+++.+.-+
T Consensus 443 ~a~v~~~~~~----------------~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKidr~~Lr~~~~~~~~ 504 (509)
T 3ivr_A 443 KAVCVCKPGE----------------SIAADALAEFVAS-LIARYKKPKHVVFV-EALPKDAKGAIDRAAVKTAHGQEGH 504 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCC----------------CCCHHHHHHHHHh-hCcccCCCcEEEEe-cCCCCCCCCCccHHHHHHHHhhccc
Confidence 9999987652 2456789999998 69999999988775 7899999999999999999887543
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-61 Score=503.87 Aligned_cols=363 Identities=20% Similarity=0.286 Sum_probs=297.0
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHH-HHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSL-AKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~ 138 (458)
..+++|+++|+|||||||.||||+++|+++..+.. .....+++.++|++++.+|++|+.+. ..++.+++.|+++++.+
T Consensus 258 ~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~ 337 (663)
T 1ry2_A 258 PVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFE 337 (663)
T ss_dssp CEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEEC
T ss_pred ccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEEC
Confidence 35689999999999999999999999999876553 44556889999999999999999998 66789999999999986
Q ss_pred C----CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCC--CCceee
Q 012673 139 K----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP--KAKLIS 212 (458)
Q Consensus 139 ~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~--~~~i~~ 212 (458)
. +++..+++.|+++++|+++++|+++..|.+..........+++||.+++||+++++++++++.+.++ ++++++
T Consensus 338 ~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~ 417 (663)
T 1ry2_A 338 GTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVD 417 (663)
T ss_dssp SCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEE
T ss_pred CCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEE
Confidence 4 6899999999999999999999999998765432112234679999999999999999999999883 289999
Q ss_pred ccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecC-C-----C-CCccEEEEec
Q 012673 213 AYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-G-----S-SHVGRILTRG 285 (458)
Q Consensus 213 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~-----~-~~~Gel~v~g 285 (458)
.||+||++..++........ ....+++|.|+++++++|+|+ + . |+.|||+++|
T Consensus 418 ~YG~TE~~~~~~~~~~~~~~--------------------~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g 477 (663)
T 1ry2_A 418 TYWQTESGSHLVTPLAGGVT--------------------PMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKA 477 (663)
T ss_dssp CBCCTTTCSCSEECCTTTCC--------------------CCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESS
T ss_pred eECCccccCeeeccCCCCCc--------------------ccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEec
Confidence 99999998655432210000 012236999999999999997 3 2 7889999999
Q ss_pred --cccchhhhcCcCCCCcccC--CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEE
Q 012673 286 --AHVMLRYWDQFLAKPSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361 (458)
Q Consensus 286 --~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 361 (458)
|+++.|||++++.+...+. .+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|+
T Consensus 478 ~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vv 557 (663)
T 1ry2_A 478 AWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVV 557 (663)
T ss_dssp CCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEE
T ss_pred CCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEE
Confidence 5899999999877655543 378999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHH
Q 012673 362 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD 441 (458)
Q Consensus 362 ~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~ 441 (458)
+++++..++.++|+|+++++..+... ...+.....++|++++++ .|++|++|+.++++ ++||+|++||++|+
T Consensus 558 g~~~~~~g~~~~a~Vv~~~~~~~~~~------~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~T~sGKi~R~ 629 (663)
T 1ry2_A 558 GFNDDLTGQAVAAFVVLKNKSSWSTA------TDDELQDIKKHLVFTVRK-DIGPFAAPKLIILV-DDLPKTRSGKIMRR 629 (663)
T ss_dssp CCCCCTTSCCCEEEEEEC------------------CCSHHHHHHHHHHH-HTCTTTSCSEEEEC-SCCCBCTTSCBCHH
T ss_pred EEecCCCCeEEEEEEEEcCCCccccc------cchhHHHHHHHHHHHHHH-hCCCCcCCeEEEEc-CCCCCCCccCchHH
Confidence 99998889999999999875320000 000000125789999998 69999999998875 78999999999999
Q ss_pred HHHHHHHHHh
Q 012673 442 EVRREVMSHL 451 (458)
Q Consensus 442 ~l~~~~~~~~ 451 (458)
.|++.+.+.+
T Consensus 630 ~L~~~~~~~~ 639 (663)
T 1ry2_A 630 ILRKILAGES 639 (663)
T ss_dssp HHHHSCC---
T ss_pred HHHHHHcCCC
Confidence 9999887654
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-61 Score=489.57 Aligned_cols=361 Identities=23% Similarity=0.296 Sum_probs=293.6
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHh--hcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEec
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI--VGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFI 137 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~ 137 (458)
....++|+++|+|||||||.||||+++|+++.+........ +++..++++++..|++|..++..++.++..|+++++.
T Consensus 140 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~ 219 (521)
T 3l8c_A 140 HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFAL 219 (521)
T ss_dssp SCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 34578999999999999999999999999998777666554 6778899999999999999988888999999999998
Q ss_pred CC---CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecc
Q 012673 138 PK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAY 214 (458)
Q Consensus 138 ~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 214 (458)
+. .++..+++.|+++++|++.++|+++..+........ ...+++|.+++||+++++++.+.+.+.|+++++++.|
T Consensus 220 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~Y 297 (521)
T 3l8c_A 220 PKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQ--AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAY 297 (521)
T ss_dssp CGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCST--TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcccc--ccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCc
Confidence 76 388999999999999999999999988876533222 2357899999999999999999999999899999999
Q ss_pred ccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccc
Q 012673 215 GMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVM 289 (458)
Q Consensus 215 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~ 289 (458)
|+||++..++.......... .....++|+|+++++++|+|++ .|+.|||+++|++++
T Consensus 298 G~TE~~~~~~~~~~~~~~~~------------------~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~ 359 (521)
T 3l8c_A 298 GPTEATVALSAIEITREMVD------------------NYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVS 359 (521)
T ss_dssp CCGGGSSCSEEEEECHHHHH------------------HCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEESTTSC
T ss_pred CccHHhhhhceeeccccccc------------------CCCccccccccCCCEEEEECCCcCCCCCCCceEEEecccccC
Confidence 99999876655432211000 0012369999999999999976 578899999999999
Q ss_pred hhhhcCcCCCCccc---CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCC
Q 012673 290 LRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 366 (458)
Q Consensus 290 ~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 366 (458)
.|||++++.+.+.| ++++||+|||+|++++||+++++||+||+||++|++|+|.+||++|.+||+|.+++|++.+++
T Consensus 360 ~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 439 (521)
T 3l8c_A 360 KGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNK 439 (521)
T ss_dssp SCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSS
T ss_pred hhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecC
Confidence 99999999888766 578899999999999999999999999999999999999999999999999999999998765
Q ss_pred C-CcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 367 R-LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 367 ~-~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
. .++.++|+++++++.....+ ......++|+++|++ .|+.|++|+.++++ ++||+|++||++|+.|++
T Consensus 440 ~~~~~~~~a~vv~~~~~~~~~~---------~~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t~~GKidr~~L~~ 508 (521)
T 3l8c_A 440 EHKVQNLLAYIVVKDGVKERFD---------RELELTKAIKASVKD-HMMSYMMPSKFLYR-DSLPLTPNGKIDIKTLIN 508 (521)
T ss_dssp SCC---CEEEEEECTTSGGGCS---------SHHHHHHHHHHHSGG-GSCGGGSCSEEEEC-SSCCBCTTSSBCHHHHHH
T ss_pred CCCceEEEEEEEecCccccccc---------cchhhHHHHHHHHHh-hCccccCCeEEEEe-cccCCCCCcCccHHHHhh
Confidence 4 46889999999876321100 011236789999998 69999999998775 789999999999999999
Q ss_pred HHHHHh
Q 012673 446 EVMSHL 451 (458)
Q Consensus 446 ~~~~~~ 451 (458)
.+.++-
T Consensus 509 ~~~~~~ 514 (521)
T 3l8c_A 509 EVNNRE 514 (521)
T ss_dssp HTC---
T ss_pred hhhcCC
Confidence 987653
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-61 Score=493.70 Aligned_cols=336 Identities=24% Similarity=0.317 Sum_probs=288.8
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
...++|+++|+|||||||.||||+++|+++.+........+++.++|++++.+|++|.+++..++.+++.|+++++.+.
T Consensus 178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 257 (563)
T 1amu_A 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKD 257 (563)
T ss_dssp CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHH
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChH
Confidence 3467899999999999999999999999998888777788899999999999999999998888899999999999876
Q ss_pred --CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 140 --FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 140 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
+++..+++.|+++++|++.++|+++..+... ..+++|.+++||+++++++.+.+.+. +++++.||+|
T Consensus 258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~T 326 (563)
T 1amu_A 258 TINDFVKFEQYINQKEITVITLPPTYVVHLDPE--------RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPT 326 (563)
T ss_dssp HHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCG
T ss_pred hhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcC
Confidence 6899999999999999999999988776432 24689999999999999999998873 6899999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++..++......... ....++|+|+++++++|+|++ .|+.|||+++|++++.||
T Consensus 327 E~~~~~~~~~~~~~~~--------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY 386 (563)
T 1amu_A 327 ETTICATTWVATKETI--------------------GHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGY 386 (563)
T ss_dssp GGSSCSEEEECCSSCC--------------------CSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEE
T ss_pred HHhHhheeeecccccC--------------------CCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhh
Confidence 9987655433211100 012358999999999999975 578999999999999999
Q ss_pred hcCcCCCCcccC------CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCC
Q 012673 293 WDQFLAKPSVST------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 366 (458)
Q Consensus 293 ~~~~~~~~~~~~------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 366 (458)
|++++.|.+.|. +++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.+++
T Consensus 387 ~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~ 466 (563)
T 1amu_A 387 WKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDH 466 (563)
T ss_dssp TTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECT
T ss_pred CCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecC
Confidence 999988776653 45799999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHH
Q 012673 367 RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446 (458)
Q Consensus 367 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~ 446 (458)
..++.++|++++... .+.++|++++++ .|+.||+|+.++++ ++||+|++||++|+.|++.
T Consensus 467 ~~~~~~~a~vv~~~~------------------~~~~~l~~~l~~-~L~~y~~P~~i~~v-~~lP~t~~GKi~r~~L~~~ 526 (563)
T 1amu_A 467 QEQPYLCAYFVSEKH------------------IPLEQLRQFSSE-ELPTYMIPSYFIQL-DKMPLTSNGKIDRKQLPEP 526 (563)
T ss_dssp TSCEEEEEEEEESSC------------------CCHHHHHHHHHH-HSCGGGSCSEEEEC-SSCCBCTTSSBCGGGSCCC
T ss_pred CCCeEEEEEEEeCCC------------------CCHHHHHHHHHh-hCchhhCCcEEEEe-cccCCCCCcChhHHhcCCc
Confidence 889999999987643 356789999998 69999999998775 7899999999999999864
Q ss_pred H
Q 012673 447 V 447 (458)
Q Consensus 447 ~ 447 (458)
.
T Consensus 527 ~ 527 (563)
T 1amu_A 527 D 527 (563)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-62 Score=501.76 Aligned_cols=345 Identities=26% Similarity=0.328 Sum_probs=207.3
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC-
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP- 138 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~- 138 (458)
....++|+++|+|||||||.||||+++|+++.+.... ...+++.++|++++++|++|..+...++.+++.|+++++.+
T Consensus 209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 3457899999999999999999999999998755433 34567889999999999999877778889999999999987
Q ss_pred -CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 139 -KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 139 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
.+++..+++.|+++++|++.++|+++..|++.... .++++|.+++||+++++++.+.+.+.++++++++.||+|
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~T 362 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-----AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPA 362 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCG
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechh
Confidence 47899999999999999999999999999875321 247899999999999999999999999899999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++++.+.......... ....++|+|+++++++|+|++ .|++|||+|+|++++.||
T Consensus 363 E~~~~~~~~~~~~~~~~-------------------~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY 423 (570)
T 4gr5_A 363 ESMGFTTHHAVVAGDLS-------------------GTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGY 423 (570)
T ss_dssp GGCSCSEEEECCGGGTT-------------------SSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEE
T ss_pred hheeeeeeeeecccccC-------------------CCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhc
Confidence 99876654432211100 012258999999999999976 678899999999999999
Q ss_pred hcCcCCCCcccC--------CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeec
Q 012673 293 WDQFLAKPSVST--------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 364 (458)
Q Consensus 293 ~~~~~~~~~~~~--------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 364 (458)
|++++.+.+.|. +++||+|||+|++++||+++++||+||+||++|+||+|.|||++|.+||+|.+++|++.+
T Consensus 424 ~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~ 503 (570)
T 4gr5_A 424 VSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQD 503 (570)
T ss_dssp TTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------
T ss_pred CCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEee
Confidence 999988877663 348999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHH
Q 012673 365 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444 (458)
Q Consensus 365 ~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~ 444 (458)
++.+++.++|++++.++. ...+.++|+++|++ .|+.|++|+.++++ ++||+|++||++|++|+
T Consensus 504 ~~~~~~~~~a~vv~~~~~---------------~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~ 566 (570)
T 4gr5_A 504 SRLGDKQLVAYVVAERAD---------------APPDAAELRRHVAE-ALPAYMVPVECVPV-DELPRTPNGKLDRRALT 566 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEEEEecCCC---------------CCcCHHHHHHHHHh-hCccccCCcEEEEc-ccCCCCCCcCcchHhhh
Confidence 888889999999876531 12456789999998 69999999988775 78999999999999998
Q ss_pred HH
Q 012673 445 RE 446 (458)
Q Consensus 445 ~~ 446 (458)
+.
T Consensus 567 ~~ 568 (570)
T 4gr5_A 567 GS 568 (570)
T ss_dssp --
T ss_pred cc
Confidence 75
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-61 Score=525.33 Aligned_cols=360 Identities=30% Similarity=0.435 Sum_probs=219.0
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHH----hhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceE
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA----IVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACH 134 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~ 134 (458)
....++|+++|+|||||||.||||+++|+++......... .+++.++|++++.+|++|.+++ ..++.++..|+++
T Consensus 220 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~ 299 (979)
T 3tsy_A 220 VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAI 299 (979)
T ss_dssp SCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEE
T ss_pred CCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEE
Confidence 3467899999999999999999999999999877665543 3467889999999999999998 4567889999999
Q ss_pred EecCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecc
Q 012673 135 VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAY 214 (458)
Q Consensus 135 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 214 (458)
++.+++++..+++.|+++++|++.++|+++..|++....... .++++|.+++||+++++++.+.+.+.||++++++.|
T Consensus 300 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~Y 377 (979)
T 3tsy_A 300 LIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKY--DLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGY 377 (979)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTS--CCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECE
T ss_pred EEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCC--CccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeee
Confidence 999999999999999999999999999999999877544332 457899999999999999999999999999999999
Q ss_pred ccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEecccc
Q 012673 215 GMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHV 288 (458)
Q Consensus 215 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~ 288 (458)
|+||++.+++.+........ ....+++|+|+++++++|+|++ .|+.|||+|+|+++
T Consensus 378 G~TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v 439 (979)
T 3tsy_A 378 GMTEAGPVLAMSLGFAKEPF------------------PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQI 439 (979)
T ss_dssp ECGGGCSEEEECGGGSSSCC------------------CCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTS
T ss_pred chhhhhHHHHhCCCCCCCcc------------------ccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCc
Confidence 99999876554322111100 0122368999999999999954 57889999999999
Q ss_pred chhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCC
Q 012673 289 MLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARL 368 (458)
Q Consensus 289 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 368 (458)
+.|||++++.+.+.++.++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++..
T Consensus 440 ~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~ 519 (979)
T 3tsy_A 440 MKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAA 519 (979)
T ss_dssp CSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-------------------------------------
T ss_pred cccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCC
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHH
Q 012673 369 TEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448 (458)
Q Consensus 369 ~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~ 448 (458)
++.+++++++.++. ..+.+++++++++ .|+.|++|+.++++ ++||+|++||++|+.|++.+.
T Consensus 520 g~~~~a~vv~~~~~----------------~~~~~~l~~~l~~-~l~~~~~p~~i~~v-~~lP~t~~GKi~r~~L~~~~~ 581 (979)
T 3tsy_A 520 GEVPVAFVVKSKDS----------------ELSEDDVKQFVSK-QVVFYKRINKVFFT-ESIPKAPSGKILRKDLRAKLA 581 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEEECCCC----------------CCCHHHHHHHHHH-hcccccCCeEEEEe-CCcCcCCCCCeeHHHHHHHHH
Confidence 99999999987652 2456789999998 69999999987765 789999999999999999999
Q ss_pred HHhhcCCCC
Q 012673 449 SHLKSLPSN 457 (458)
Q Consensus 449 ~~~~~~~~~ 457 (458)
+.+++-|.+
T Consensus 582 ~~~~~~~~~ 590 (979)
T 3tsy_A 582 NGLGSGMAS 590 (979)
T ss_dssp -------CC
T ss_pred hhcCCcccc
Confidence 988877764
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-60 Score=492.36 Aligned_cols=341 Identities=21% Similarity=0.337 Sum_probs=283.2
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC--
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP-- 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~-- 138 (458)
...++|+|||+|||||||.||||+++|+++.+.... ...+++.++|++++.+|++|..++..++.++..|+++++.+
T Consensus 160 ~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 238 (620)
T 4dg8_A 160 CFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLG 238 (620)
T ss_dssp CCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSS
T ss_pred CCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccc
Confidence 356899999999999999999999999999765544 45678899999999999999999989999999999999864
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..+++.|+++++|+++++|+++..|++... ..++++|.+++||+++++++.+.+.+.+++++++|.||+||
T Consensus 239 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 313 (620)
T 4dg8_A 239 PLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-----DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTE 313 (620)
T ss_dssp SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-----hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhh
Confidence 5899999999999999999999999999876421 13478999999999999999999988888999999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy 292 (458)
++..++.......... ....++|+|+++++++|+|++ .|++|||+++|++++.||
T Consensus 314 ~~~~~~~~~~~~~~~~-------------------~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY 374 (620)
T 4dg8_A 314 NTTFTCCHVVTDDDLE-------------------EDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGY 374 (620)
T ss_dssp GCSCSEEEECCTGGGG-------------------SSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEE
T ss_pred hhhheEEEeccccccC-------------------CCCCCceecccCcEEEEECccCCCCCCCCCceEEEEecccccccc
Confidence 9876654332211100 022359999999999999975 467899999999999999
Q ss_pred hcCcCCCCcccCCC-------ceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecC
Q 012673 293 WDQFLAKPSVSTGE-------VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 365 (458)
Q Consensus 293 ~~~~~~~~~~~~~~-------~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 365 (458)
|++++.|.+.|..+ +||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.++
T Consensus 375 ~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~ 454 (620)
T 4dg8_A 375 RNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRER 454 (620)
T ss_dssp TTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred CCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeC
Confidence 99999888777442 79999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 366 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 366 ~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
+..++.+++++. ... ++++++++ .|+.||+|+.++++ ++||+|++||++|++|++
T Consensus 455 ~~~~~lv~~~~~-~~~----------------------~~~~~l~~-~Lp~y~~P~~~~~v-~~lP~t~~GKidR~~L~~ 509 (620)
T 4dg8_A 455 NGVKQLLCAWTG-KAD----------------------ASPQALLR-QLPTWQRPHACVRV-EALPLTAHGKLDRAALLR 509 (620)
T ss_dssp TTEEEEEEEEEE-CTT----------------------CCCHHHHH-HSCGGGSCSEEEEC-SSCCCC----CCHHHHHH
T ss_pred CCceEEEEEEec-ChH----------------------HHHHHHHH-hChhhcCCcEEEEE-CcCCCCcccCHhHHHHhh
Confidence 755555554442 211 12244555 59999999998875 789999999999999998
Q ss_pred HHHHHh
Q 012673 446 EVMSHL 451 (458)
Q Consensus 446 ~~~~~~ 451 (458)
.+.+.+
T Consensus 510 ~~~~~~ 515 (620)
T 4dg8_A 510 RLEEPL 515 (620)
T ss_dssp HTCSCC
T ss_pred cccccc
Confidence 775443
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-60 Score=479.79 Aligned_cols=343 Identities=25% Similarity=0.371 Sum_probs=282.2
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHH-HHHHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEec-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSAL-IVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFI- 137 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~- 137 (458)
...++|+++++|||||||.||||+++|+++ ..........+++.++|++++.+|++|.+++. .++.++..|+++++.
T Consensus 179 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 258 (529)
T 2v7b_A 179 ATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMA 258 (529)
T ss_dssp CCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCC
T ss_pred CCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEec
Confidence 456899999999999999999999999998 55544444556788999999999999999985 467889999999987
Q ss_pred CCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 138 PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 138 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
+.+++..+++.|+++++|+++++|+++..+++....... ...++|.+++||+++++++.+.+.+.| ++++++.||+|
T Consensus 259 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~T 335 (529)
T 2v7b_A 259 ERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPAR--ADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGST 335 (529)
T ss_dssp SCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCG--GGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECT
T ss_pred CCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccc--cCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchh
Confidence 568999999999999999999999999988765322221 124799999999999999999999988 89999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++.+++...... . ...++|+|+++++++++|++ .|+.|||+++|++++.||
T Consensus 336 E~~~~~~~~~~~~---~--------------------~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY 392 (529)
T 2v7b_A 336 EMLHIFLSNRAGA---V--------------------EYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMY 392 (529)
T ss_dssp TTSSEEEECCTTC---C--------------------CTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCB
T ss_pred hcCceeeccccCC---C--------------------ccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCccccc
Confidence 9976544321110 0 12258999999999999975 578899999999999999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
|++++.+...+. ++||+|||++++++||+++++||+||+||++|++|+|.+||++|.+||+|.+++|+++ ++..++.+
T Consensus 393 ~~~~~~t~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~ 470 (529)
T 2v7b_A 393 WNNREKSRATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKT 470 (529)
T ss_dssp TTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEE
T ss_pred CCChHHHHHhhh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEE
Confidence 999988877774 7899999999999999999999999999999999999999999999999999999999 66678889
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHH
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~ 446 (458)
++++++.++... .....++|++++++ .|+.|++|+.++++ ++||+|++||++|++|+++
T Consensus 471 ~a~vv~~~~~~~-------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 471 RAFVVLKREFAP-------------SEILAEELKAFVKD-RLAPHKYPRDIVFV-DDLPKTATGKIQRFKLREQ 529 (529)
T ss_dssp EEEEEECTTCCC-------------CHHHHHHHHHHHHT-TSCTTTSCSEEEEE-SCCCBCTTSCBCHHHHHC-
T ss_pred EEEEEecCCCCc-------------chhHHHHHHHHHHh-hcchhhCCeEEEEe-ccCCCCCccchhHHhHhhC
Confidence 999998764210 00124689999998 79999999998875 7899999999999999863
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-59 Score=448.08 Aligned_cols=317 Identities=19% Similarity=0.245 Sum_probs=268.5
Q ss_pred CCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCChH
Q 012673 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESK 143 (458)
Q Consensus 64 ~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~ 143 (458)
.+|+|||+|||||||.||||++||+++.++.......++++++|++++++|++|++|+..++.++..|+++++.++. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 47899999999999999999999999999988888999999999999999999999998889999999999887642 1
Q ss_pred HHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccce
Q 012673 144 SALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSL 223 (458)
Q Consensus 144 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 223 (458)
..++.|+++++|++.++|+++..|++...... .++++|.+++||+++++++.+++++. ++++++.||+||++..+
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~---~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~ 188 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSATSG---QVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHV 188 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTTGG---GGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEE
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhccccccc---cCCcceEEEEcccCCCchheeccccc--CceEEecccccccccee
Confidence 23667899999999999999999987643322 35789999999999999999999874 79999999999998766
Q ss_pred eeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEeccccchhhhcCcCCCCccc
Q 012673 224 TFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVS 303 (458)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~ 303 (458)
+....... ..+++|.+.|++++.+.+. ||++++|+..
T Consensus 189 ~~~~~~~~-----------------------~~g~~~~~~pgv~~~~~~~-----Gel~~~g~~~--------------- 225 (358)
T 4gs5_A 189 ALKALNGP-----------------------EASELYVFLPGIQYGVDER-----GCLHISGAVT--------------- 225 (358)
T ss_dssp EEEECSST-----------------------TCCSCEEECTTCEEEECTT-----SEEEEESGGG---------------
T ss_pred eccccccc-----------------------ccceeeccCCCeEEEecCc-----CceEEecccc---------------
Confidence 55433221 1224889999999888554 9999998642
Q ss_pred CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHH---hcCcCcceEEEE-eecCCCCcceEEEEEEec
Q 012673 304 TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL---LQHPGIIGIVVV-GIANARLTEMVVACVRLR 379 (458)
Q Consensus 304 ~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l---~~~~~v~~~~v~-~~~~~~~~~~~~a~v~~~ 379 (458)
.++||+|||+|++++|| ++++||+||+||++|+||+|.|||++| .+||+|.+++|+ +.+++.+|+.++|+++..
T Consensus 226 -~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~ 303 (358)
T 4gs5_A 226 -NGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENA 303 (358)
T ss_dssp -TTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESC
T ss_pred -cCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECC
Confidence 46899999999999988 667799999999999999999999877 468999998876 678888899999998865
Q ss_pred cccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHh
Q 012673 380 ESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451 (458)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 451 (458)
.+ ....++|+++|++ .|+.|++|+.++++ ++||+|++||++|++|++++++..
T Consensus 304 ~~-----------------~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 304 MP-----------------EALTERLTAEIRS-RVSTYENPKHIYFA-KAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp CC-----------------HHHHHHHHHHHHH-HSCGGGSCSCEEEE-SSCCBCTTSCBCHHHHHHHTC---
T ss_pred CC-----------------CcCHHHHHHHHHh-hCCCCCCceEEEEE-CCcCCCCCCChhHHHHHHHhhhhc
Confidence 53 1346789999998 69999999998775 789999999999999999887653
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-58 Score=508.11 Aligned_cols=344 Identities=22% Similarity=0.313 Sum_probs=297.7
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
...++|+|||+|||||||+||||+++|+++.+. ......+++.++|++++..|++|..+...++.++..|+++++.+.
T Consensus 603 ~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~ 681 (1304)
T 2vsq_A 603 AIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEH 681 (1304)
T ss_dssp CCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGG
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChh
Confidence 457899999999999999999999999999754 444456678899999999999999998899999999999999874
Q ss_pred --CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 140 --FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 140 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
.++..+++.|+++++|+++++|+++..+.+.... ..+++|.+++|||++++++.+.+.+.+++++++|.||+|
T Consensus 682 ~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~-----~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 756 (1304)
T 2vsq_A 682 TLLDTERLTDLILQENVNVMFATTALFNLLTDAGED-----WMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPT 756 (1304)
T ss_dssp GTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH-----HHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCG
T ss_pred hcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh-----cCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChh
Confidence 7899999999999999999999999998764211 135799999999999999999999988778999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++..++.......... ....++|+|++++++.|+|++ .|++|||+|+|+++++||
T Consensus 757 E~~~~~~~~~~~~~~~~-------------------~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY 817 (1304)
T 2vsq_A 757 EGTVFATAHVVHDLPDS-------------------ISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGY 817 (1304)
T ss_dssp GGSSCSEEEECCCCCSS-------------------CSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCB
T ss_pred HHhHHheeeeccCcccc-------------------CCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCccc
Confidence 99876655432211000 012259999999999999976 588999999999999999
Q ss_pred hcCcCCCCccc------CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCC
Q 012673 293 WDQFLAKPSVS------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 366 (458)
Q Consensus 293 ~~~~~~~~~~~------~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 366 (458)
+++++.|.+.| .+++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.++.
T Consensus 818 ~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~ 897 (1304)
T 2vsq_A 818 VNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHE 897 (1304)
T ss_dssp TTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred cCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecC
Confidence 99998887766 346799999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHH
Q 012673 367 RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446 (458)
Q Consensus 367 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~ 446 (458)
..++.++|+++.... .+.+++++++++ .||.||+|..++++ ++||+|++||++|++|++.
T Consensus 898 ~~~~~l~a~vv~~~~------------------~~~~~l~~~l~~-~Lp~ymvP~~~~~l-~~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 898 SGDASINAYLVNRTQ------------------LSAEDVKAHLKK-QLPAYMVPQTFTFL-DELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp SSCCEEEEEEECSSS------------------SCHHHHHHHHHH-HSCGGGSCSEEEEE-SCCCCCSSCSSCCSCCCCC
T ss_pred CCCEEEEEEEeCCCC------------------CCHHHHHHHHHH-hChHhhhccEEEEe-cccCCCCCcccCHhhcCCc
Confidence 888999999987643 456889999998 69999999998876 7899999999999998765
Q ss_pred HHH
Q 012673 447 VMS 449 (458)
Q Consensus 447 ~~~ 449 (458)
...
T Consensus 958 ~~~ 960 (1304)
T 2vsq_A 958 DQD 960 (1304)
T ss_dssp CGG
T ss_pred chh
Confidence 443
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-57 Score=468.03 Aligned_cols=372 Identities=21% Similarity=0.250 Sum_probs=296.7
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHH-HHHHHhcCceEEecC
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS-AMAMLMVGACHVFIP 138 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~ 138 (458)
....++|+++|+|||||||.||||+++|+++..+.......+++.++|++++++|++|.+|+.. ++.+++.|+++++.+
T Consensus 162 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 162 TSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 3457899999999999999999999999999999988888999999999999999999999865 788999999999988
Q ss_pred CC----ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhc-cccCCCCceEEEeCCCCCCHHHHHHHHhhCC-----CC
Q 012673 139 KF----ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK-TWKGRDSVKKILNGGGGLPSELMKEATNSFP-----KA 208 (458)
Q Consensus 139 ~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-----~~ 208 (458)
.+ ++..+++.|+++++|++.++|.++..+++.+.... ....++++|.+++||+++++++.+.+.+.|+ ++
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~ 321 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKE 321 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGG
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 65 89999999999999999999999999887643322 2234579999999999999999999998873 45
Q ss_pred ceeeccccccCccceeeeeecCCCCC----CCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCc
Q 012673 209 KLISAYGMTETSSSLTFMTLYDPTLE----TPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHV 278 (458)
Q Consensus 209 ~i~~~YG~tE~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~ 278 (458)
++++.||+||++..++.......... ..............+........++|+|+++ ++|+|++ .|++
T Consensus 322 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~ 399 (590)
T 3kxw_A 322 AFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQV 399 (590)
T ss_dssp GEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBC
T ss_pred ccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCE
Confidence 79999999999986654332111000 0000000000000011112234578999998 7778765 5778
Q ss_pred cEEEEeccccchhhhcCcCCCCcccCC--------CceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHH-
Q 012673 279 GRILTRGAHVMLRYWDQFLAKPSVSTG--------EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL- 349 (458)
Q Consensus 279 Gel~v~g~~~~~gy~~~~~~~~~~~~~--------~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l- 349 (458)
|||+|+|++++.|||++++.|...|.. .+||+|||+|+++ +|+++++||+||+||++|++|+|.|||++|
T Consensus 400 GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~ 478 (590)
T 3kxw_A 400 GEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLM 478 (590)
T ss_dssp EEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHH
T ss_pred EEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHH
Confidence 999999999999999999888777643 3399999999999 999999999999999999999999999999
Q ss_pred hcCcCcc--eEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhccccc-ccCCe-EEEE
Q 012673 350 LQHPGII--GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG-FKAPR-LFVL 425 (458)
Q Consensus 350 ~~~~~v~--~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~-~~~p~-~~~~ 425 (458)
..+|.|. +++|++++++. ++.+++++++.++.. ...+.+++.+++++ .++. +++|. .+++
T Consensus 479 ~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~--------------~~~~~~~l~~~l~~-~l~~~~~~p~~~i~~ 542 (590)
T 3kxw_A 479 HSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFM--------------DDVAQDNLFNEIFE-LVYENHQLEVHTIVL 542 (590)
T ss_dssp HSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTC--------------CHHHHHHHHHHHHH-HHHHHHSCCCCEEEE
T ss_pred hcCccccCccEEEEEecCCC-CceEEEEEEeccccc--------------cchhHHHHHHHHHH-HHHHHcCCceeEEEE
Confidence 7889998 89999998876 778888888876421 12456778888887 5764 88885 4444
Q ss_pred e-eCCCCCCCcccchHHHHHHHHHHH
Q 012673 426 W-RKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 426 ~-~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
+ .++||+|++||++|+.|++++.+.
T Consensus 543 v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 543 IPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp EETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred ECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 3 278999999999999999999764
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-57 Score=463.77 Aligned_cols=356 Identities=19% Similarity=0.254 Sum_probs=197.5
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHh--------hcCCCCceEEeccchhhHhhhHHHHHHHhcCc
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI--------VGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGA 132 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~--------~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~ 132 (458)
...++++++|+|||||||.||||+++|+++.+........ +.+...+++++..|++|..++..++.++..|+
T Consensus 171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 250 (562)
T 3ite_A 171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGL 250 (562)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhccc
Confidence 4467899999999999999999999999998776554443 34678899999999999998888899999999
Q ss_pred eEEecCCCC-hHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCcee
Q 012673 133 CHVFIPKFE-SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLI 211 (458)
Q Consensus 133 ~~v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~ 211 (458)
++++.+.+. +..+++.++++++|++.++|+++..+... ....+++|.+++||+++++++.+.+.+.+ +++++
T Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~ 323 (562)
T 3ite_A 251 CAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALV 323 (562)
T ss_dssp EEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEE
T ss_pred EEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEE
Confidence 999877543 46788999999999999999987765322 12357899999999999999999999877 89999
Q ss_pred eccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEec
Q 012673 212 SAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRG 285 (458)
Q Consensus 212 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g 285 (458)
+.||+||++..++........ ...++|+|+++++++++|++ .|+.|||+++|
T Consensus 324 ~~YG~TE~~~~~~~~~~~~~~----------------------~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g 381 (562)
T 3ite_A 324 NVYGPTEVTIGCSAGRILPDS----------------------DTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEG 381 (562)
T ss_dssp EEECCGGGCSCSEEEECCTTS----------------------CTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEES
T ss_pred EeeccchheeeeeeeeecCCC----------------------CCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEec
Confidence 999999998765543322111 12369999999999999865 57789999999
Q ss_pred cccchhhhcCcCCCCccc-CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcC-cCcceEEEEee
Q 012673 286 AHVMLRYWDQFLAKPSVS-TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH-PGIIGIVVVGI 363 (458)
Q Consensus 286 ~~~~~gy~~~~~~~~~~~-~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~ 363 (458)
++++.|||++++.+...+ ++++||+|||+|++++||+++++||+||+||++|+||+|.|||++|.+| +.+.+++|++.
T Consensus 382 ~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~ 461 (562)
T 3ite_A 382 SLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLL 461 (562)
T ss_dssp TTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC-----------------------------------
T ss_pred cccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEe
Confidence 999999999999887654 3345999999999999999999999999999999999999999999998 88889999998
Q ss_pred cCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCC-CcccchHHH
Q 012673 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLT-STGKIRRDE 442 (458)
Q Consensus 364 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t-~~GKv~r~~ 442 (458)
+++..++..+++++...+.....+... .........++|+++|++ .|+.||+|+.++++ ++||+| ++||++|+.
T Consensus 462 ~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~-~L~~y~~P~~i~~v-~~lP~t~~~GKi~r~~ 536 (562)
T 3ite_A 462 NHPGTSKQFLVSFVASSGAAVRGELRW---INENYKEINNSLRQACEQ-TLPAYMVPDFIIPI-SFIPLRDTSAKTDAKA 536 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCcceEEEEEEecccccccccccc---cccchhhHHHHHHHHHHh-hCCcccCCcEEEEe-ccCCCCCCCCcchHHH
Confidence 888877776666665443211100000 000111234689999998 69999999988775 789998 999999999
Q ss_pred HHHHHHHH
Q 012673 443 VRREVMSH 450 (458)
Q Consensus 443 l~~~~~~~ 450 (458)
|++.+.+.
T Consensus 537 L~~~~~~~ 544 (562)
T 3ite_A 537 LEHMFHTL 544 (562)
T ss_dssp --------
T ss_pred HHHHHhcc
Confidence 99998754
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-52 Score=414.21 Aligned_cols=333 Identities=16% Similarity=0.173 Sum_probs=270.6
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHH---HhhcCCCCceEEeccch-hhHhhhHHHHHHHhcCceEEe
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPL-CHIGGLSSAMAMLMVGACHVF 136 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~l~~G~~~v~ 136 (458)
..+++++++++|||||||.||+|+++|+++........ ..+++.++|++++.+|+ +|..++...+.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34678999999999999999999999999876544332 35788999999999998 577777778889999999999
Q ss_pred cCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 137 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
.+.+++..+++.|+++++|+++++|+++..|++.++........+++|.+++||+++++++.+.+.+.| ++++++.||+
T Consensus 168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 246 (443)
T 2y4o_A 168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL 246 (443)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence 888899999999999999999999999999998776544332346899999999999999999999998 8999999999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccch
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVML 290 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~ 290 (458)
||+++.+......... .+ .+.+.+++.++++|++ .|+.|||+++|.
T Consensus 247 TE~~g~~~~~~~~~~~----------------------~g--~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~---- 298 (443)
T 2y4o_A 247 SEVMGPGVACECVETK----------------------DG--PVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL---- 298 (443)
T ss_dssp TTTTEEEEEEECTTTC----------------------CS--EEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES----
T ss_pred hhhcCCeEEeccCCCC----------------------Cc--eEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC----
Confidence 9974321211111000 00 4556788999999854 578899999973
Q ss_pred hhhcCcCCCCcccCCCceEecCceEEEeCC-CcE-----EEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeec
Q 012673 291 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDG-GNV-----WLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 364 (458)
Q Consensus 291 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 364 (458)
+...+ ..+||+|||+|+++++ |++ +++||+||+||++|++|+|.+||++|.+||+|.++++++++
T Consensus 299 --------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~ 369 (443)
T 2y4o_A 299 --------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLS 369 (443)
T ss_dssp --------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred --------CcccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEe
Confidence 22223 5689999999999999 987 89999999999999999999999999999999999999988
Q ss_pred CCCCcceEEEEEEecc--ccccccccccccchhhhhhhhHHHHHHHhhhcccccc-cCCeEEEEee-CCCCCCCcccchH
Q 012673 365 NARLTEMVVACVRLRE--SWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWR-KPFPLTSTGKIRR 440 (458)
Q Consensus 365 ~~~~~~~~~a~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~-~~lP~t~~GKv~r 440 (458)
++..++.++++|++.+ +.. ....+.+++++++++ .|+.| ++|..+.++. ++||+|++||++|
T Consensus 370 ~~~~~~~~~a~v~~~~~~~~~-------------~~~~~~~~l~~~l~~-~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r 435 (443)
T 2y4o_A 370 RDGHMDRLDLAVELRSEAAAS-------------VTDGERAALARELQH-RIKTMVGVSSGVTVLAAGGIPATATGKARR 435 (443)
T ss_dssp EETTEEEEEEEEEECHHHHTT-------------CCHHHHHHHHHHHHH-HHHHHTCCCCEEEEECTTCSCCCTTSCCCS
T ss_pred cCCCCceEEEEEEECCccccc-------------chhhHHHHHHHHHHH-HHHHHhCCceEEEEeCCCcccCccCCcceE
Confidence 7777888999999865 210 011346788899988 68877 5888766653 5899999999999
Q ss_pred HHHHH
Q 012673 441 DEVRR 445 (458)
Q Consensus 441 ~~l~~ 445 (458)
+..++
T Consensus 436 ~~~~r 440 (443)
T 2y4o_A 436 VIDRR 440 (443)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 75443
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-51 Score=406.62 Aligned_cols=326 Identities=18% Similarity=0.214 Sum_probs=263.0
Q ss_pred CCC-CceEEEEeccCCCCCccceecccHHHHHHHHHH---HHhhcCCCCceEEeccchhhHhh-hHHHHHHHhcCceEEe
Q 012673 62 WAP-EGAVIICFTSGTTGSPKGVVISHSALIVQSLAK---IAIVGYGEDDVYLHTAPLCHIGG-LSSAMAMLMVGACHVF 136 (458)
Q Consensus 62 ~~~-~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g-~~~~~~~l~~G~~~v~ 136 (458)
.++ +|+++++|||||||.||+|+++|+++....... ...+++.++|++++.+|+.|..+ +...+.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 456 899999999999999999999999997655444 33458899999999999865544 4667888999999999
Q ss_pred cCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 137 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
.+.+++..+++.|+++++|+++++|+++..|++.++.......++++|.+++||+++++++.+.+.+.| ++++++.||+
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 240 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGM 240 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCcc
Confidence 988999999999999999999999999999999877666544467999999999999999999999999 8999999999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccch
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVML 290 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~ 290 (458)
||+++.++....... . ..+.|.+++.++++|++ .|+.|||+++|..
T Consensus 241 TE~~~~~~~~~~~~~-----------------------~--g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~--- 292 (436)
T 3qov_A 241 TEMNGPGVAFECQEQ-----------------------N--GMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD--- 292 (436)
T ss_dssp GGGTEEEEEEECTTC-----------------------S--SEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS---
T ss_pred hhhcCCeeEEecCCC-----------------------C--eeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC---
Confidence 999644222221100 0 15677889999999943 5788999999832
Q ss_pred hhhcCcCCCCcccCCCceEecCceEEEeCCC------c---EEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEE
Q 012673 291 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGG------N---VWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361 (458)
Q Consensus 291 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 361 (458)
...+ ..+||+|||+|+++++| + ++++||+||+||++|++|+|.+||++|.+||+|.+++|+
T Consensus 293 ---------~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv 362 (436)
T 3qov_A 293 ---------REMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLI 362 (436)
T ss_dssp ---------CCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEE
T ss_pred ---------cCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEE
Confidence 2222 57899999999999998 5 699999999999999999999999999999999999999
Q ss_pred eecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccc-cCCeEEEEeeC--CCCCCCcccc
Q 012673 362 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWRK--PFPLTSTGKI 438 (458)
Q Consensus 362 ~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~~--~lP~t~~GKv 438 (458)
+++++..++.++++|++. +.... ...+.+++++++++ .|+.+ ++|..+.++ + +||+|+ ||+
T Consensus 363 ~~~~~~~~~~l~a~v~~~-~~~~~------------~~~~~~~l~~~l~~-~l~~~~~~p~~i~~v-~~~~lP~t~-GKi 426 (436)
T 3qov_A 363 TLETVNNQDEMIVEVELS-DLSTD------------NYIELEKIRRDIIR-QLKDEILVTPKVKLV-KKGSLPQSE-GKA 426 (436)
T ss_dssp EEEEETTEEEEEEEEEEC-TTCCC------------CHHHHHHHHHHHHH-HHHHHHSSCCEEEEE-CTTCCC-------
T ss_pred EEEcCCCCcEEEEEEEEc-Ccccc------------chhhHHHHHHHHHH-HHHHhcCCceEEEEe-CCCcccCcC-Ccc
Confidence 999888889999999987 42110 01235678888887 68888 899887765 6 899999 999
Q ss_pred hHHH
Q 012673 439 RRDE 442 (458)
Q Consensus 439 ~r~~ 442 (458)
+|..
T Consensus 427 ~R~~ 430 (436)
T 3qov_A 427 VRVK 430 (436)
T ss_dssp -CEE
T ss_pred eEEE
Confidence 9864
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-51 Score=405.44 Aligned_cols=328 Identities=13% Similarity=0.134 Sum_probs=268.5
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHH---HhhcCCCCceEEeccch-hhHhhhHHHHHHHhcCceEEe
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPL-CHIGGLSSAMAMLMVGACHVF 136 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~l~~G~~~v~ 136 (458)
..+++++++++|||||||.||+|+++|+++........ ..+++.++|++++.+|+ +|..++...+.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34678999999999999999999999999876544332 35788999999999998 788888778899999999998
Q ss_pred cCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 137 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
.+.+++..+++.|+++++|+++++|+++..|++.....+.....+++|.+++||+++++++.+.+.+.| ++++++.||+
T Consensus 166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 244 (437)
T 2y27_A 166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGL 244 (437)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCc
Confidence 888899999999999999999999999999998776544322246899999999999999999999988 8999999999
Q ss_pred ccCccc-eeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccc
Q 012673 217 TETSSS-LTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVM 289 (458)
Q Consensus 217 tE~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~ 289 (458)
||+++. ++... .... . ..+.+.+++.++++|++ .|+.|||+++|.
T Consensus 245 TE~~g~~~~~~~-~~~~----------------------~--g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~--- 296 (437)
T 2y27_A 245 SEVMGPGVASEC-VETK----------------------D--GPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL--- 296 (437)
T ss_dssp TTTTEEEEEECC-TTTC----------------------S--SCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES---
T ss_pred hhhcCCeeEEec-CCCC----------------------C--ceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC---
Confidence 998432 22211 1000 0 14557788999999854 578899999982
Q ss_pred hhhhcCcCCCCcccCCCceEecCceEEEeC-CCcE-----EEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEee
Q 012673 290 LRYWDQFLAKPSVSTGEVWLDTGDIGSIDD-GGNV-----WLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 363 (458)
Q Consensus 290 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 363 (458)
+...+ .++||+|||+|++++ +|++ +++||+||+||++|++|+|.+||++|.+||+|.+++++++
T Consensus 297 ---------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~ 366 (437)
T 2y27_A 297 ---------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVL 366 (437)
T ss_dssp ---------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEE
T ss_pred ---------CcCCc-hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEE
Confidence 22223 578999999999999 6986 8999999999999999999999999999999999999998
Q ss_pred cCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccc-cCCeEEEEee-CCCCCCCcccchHH
Q 012673 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWR-KPFPLTSTGKIRRD 441 (458)
Q Consensus 364 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~-~~lP~t~~GKv~r~ 441 (458)
+++..++.++++|++.++.. ....+.+++++++++ .|+.| ++|..+.++. ++||+|+ ||++|+
T Consensus 367 ~~~~~~~~l~a~v~~~~~~~-------------~~~~~~~~l~~~l~~-~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~ 431 (437)
T 2y27_A 367 TKEGPLDVLTLNVEPCPETA-------------PDTAAIQVAKQALAY-DIKSLIGVTAVINVLPVNGIERSV-GKARRV 431 (437)
T ss_dssp EEETTEEEEEEEECBCTTTT-------------TCHHHHHHHHHHHHH-HHHHHHCCCEEEEECCTTCSCCCS-SSCCCE
T ss_pred eecCCCceEEEEEEECCCcc-------------chhhhHHHHHHHHHH-HHHHhcCCceEEEEeCCCCccCCC-CcceEE
Confidence 88777889999998876421 001345778889988 68888 5888766653 5899999 999996
Q ss_pred H
Q 012673 442 E 442 (458)
Q Consensus 442 ~ 442 (458)
.
T Consensus 432 ~ 432 (437)
T 2y27_A 432 V 432 (437)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=341.25 Aligned_cols=264 Identities=18% Similarity=0.260 Sum_probs=202.1
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCC------CceEEeccchhhHhhh-HHHHHHHhcCce
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGE------DDVYLHTAPLCHIGGL-SSAMAMLMVGAC 133 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~------~d~~~~~~p~~~~~g~-~~~~~~l~~G~~ 133 (458)
...++|+++|+|||||||.||||+++|+++..+.......+++.. +|++++.+|++|.+|+ ..++.+++.|++
T Consensus 179 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~ 258 (480)
T 3t5a_A 179 EDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYP 258 (480)
T ss_dssp CSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCC
T ss_pred CCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCc
Confidence 456889999999999999999999999999988888888888877 9999999999999997 567899999999
Q ss_pred EEecCCC----ChHHHHHHHHHhcceEEeechHHHHHHHHHHHh--hccccCCCCceEEEeCCCCCCHHHHHHHHhhC--
Q 012673 134 HVFIPKF----ESKSALEAVEQHCVTSLITVPAIMADLATLIRV--KKTWKGRDSVKKILNGGGGLPSELMKEATNSF-- 205 (458)
Q Consensus 134 ~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-- 205 (458)
+++.++. ++..+++.|+++++| +.++|+++..++..... ......+++||.+++||+++++++.+++.+.|
T Consensus 259 ~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~ 337 (480)
T 3t5a_A 259 AVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFAR 337 (480)
T ss_dssp EEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGG
T ss_pred eEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhh
Confidence 9998753 899999999999999 88999998888765321 11223467999999999999999999999988
Q ss_pred ---CCCceeeccccccCccceeeeeecCCCCCCCCCCCcc--ccccCC-CCCCCCCceEecccCCCceEEEecCC-----
Q 012673 206 ---PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA--FGNVTP-NSVHQPQGVCVGKPAPHVELKVCSDG----- 274 (458)
Q Consensus 206 ---~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~G~p~~~~~~~i~d~~----- 274 (458)
+++++++.||+||++..++........... ...... .+...+ .........++|+|++ ++++|+|++
T Consensus 338 ~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~ 415 (480)
T 3t5a_A 338 FNLQERVIRPSYWLAEATVYVATSKPGQPPETV-DFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIEC 415 (480)
T ss_dssp GTCCGGGEEEEEEETTTTEEEEECCTTSSCCEE-EECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEEC
T ss_pred cCCChhhccccccccccceeEeecccCCCcceE-EecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCC
Confidence 346899999999998766543322110000 000000 000000 0000123457999999 999999975
Q ss_pred -CCCccEEEEeccccchhhhcCcCCCCcccC-----------CCceEecCceEEEeCCCcEEEEee
Q 012673 275 -SSHVGRILTRGAHVMLRYWDQFLAKPSVST-----------GEVWLDTGDIGSIDDGGNVWLVGR 328 (458)
Q Consensus 275 -~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~g~l~~~GR 328 (458)
.|++|||+|+|++++.|||++++.|.+.|. +++||+|||+|+++ ||+|+++||
T Consensus 416 ~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 416 PDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 578999999999999999999988887774 57899999999997 999999998
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-32 Score=261.79 Aligned_cols=233 Identities=17% Similarity=0.190 Sum_probs=174.7
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHH---HhhcCCCCceEEeccch-hhHhhhHHHHHHHhcCceEEe
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPL-CHIGGLSSAMAMLMVGACHVF 136 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~l~~G~~~v~ 136 (458)
.+.++++++++|||||||.||+|+++|+++........ ..+++.++|++++.+|+ +|.+|+...+.++..|+ +++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFF 165 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEE
Confidence 34789999999999999999999999999987766433 45577899999999999 99999987777788998 666
Q ss_pred cCCCChH-----------------------HHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCC
Q 012673 137 IPKFESK-----------------------SALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGL 193 (458)
Q Consensus 137 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l 193 (458)
...+++. .+++.|+++++|++.++|+++..|++....... ..+++|.+++||+++
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~--~~~~lr~i~~gGe~l 243 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQ--MKQSLAQITLGGTEL 243 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHH--HHHHCSEEEEESSCC
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhcc--ccCCeeEEEECCccC
Confidence 6677877 888899999999999999999999877442222 246899999999999
Q ss_pred CHHHHHHHH-hhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEeccc------CCCc
Q 012673 194 PSELMKEAT-NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKP------APHV 266 (458)
Q Consensus 194 ~~~~~~~~~-~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p------~~~~ 266 (458)
++++++.+. +.||++++++.||+||+++++..+... ++|.| .+++
T Consensus 244 ~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~~----------------------------~~G~~~~~~~~~~~~ 295 (369)
T 3hgu_A 244 NLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLIT----------------------------SESQQVIYDSFSPFI 295 (369)
T ss_dssp CHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCBC----------------------------TTCSSCEEECCTTTE
T ss_pred CHHHHHHHHHHhCCCcEEEcccCchhhhcceeccccc----------------------------cCCCcccccCCCCCe
Confidence 999999999 999889999999999988655332110 26777 9999
Q ss_pred eEEEecCC------CCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCC--C-------cEEEEeeccc
Q 012673 267 ELKVCSDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG--G-------NVWLVGRRNG 331 (458)
Q Consensus 267 ~~~i~d~~------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~l~~~GR~~d 331 (458)
+++|+|++ .|+.|||++++.... .+ -.+|+|||++++.+. | .+..++|.++
T Consensus 296 ~v~ivD~~~g~~vp~G~~GEl~vt~l~~~------------~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~ 361 (369)
T 3hgu_A 296 TYDVVDSITAQTVEYGERGNVIVTHLSPW------------AF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEG 361 (369)
T ss_dssp EEEEECTTTCSBCCTTCEEEEEEEEEETT------------EE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC----
T ss_pred EEEEECCCCCcCCCCCCceEEEEEEcCcc------------cc--cccccCCceEEEecCCCCCcCcccccceeccccCC
Confidence 99999973 688999999973211 11 135789999988653 2 2445667777
Q ss_pred eeeeCce
Q 012673 332 RIKSGGE 338 (458)
Q Consensus 332 ~i~~~G~ 338 (458)
..++.|.
T Consensus 362 ~~~i~gv 368 (369)
T 3hgu_A 362 RKVIEGV 368 (369)
T ss_dssp -------
T ss_pred Cceeeec
Confidence 7777664
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-16 Score=120.91 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=70.5
Q ss_pred eeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHH
Q 012673 327 GRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 406 (458)
Q Consensus 327 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 406 (458)
.|.||||+++|.||+|.+||++|.+||+|.++++++++++.+++.+.++++..++..... ...+++.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~-------------~~~~~l~ 67 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDY-------------GRLQALT 67 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCH-------------HHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccccc-------------chhhhhH
Confidence 489999999999999999999999999999999999999999999999999877632111 1123333
Q ss_pred HHhhhcccc-cccCCeEEEEe-eCCCCCCCcccchHH
Q 012673 407 QHCREKNLT-GFKAPRLFVLW-RKPFPLTSTGKIRRD 441 (458)
Q Consensus 407 ~~~~~~~l~-~~~~p~~~~~~-~~~lP~t~~GKv~r~ 441 (458)
+.+++ .+. .+.++..+.++ .++||+| +||++|-
T Consensus 68 ~~i~~-~l~~~~gv~~~v~~v~~~~lPrt-sGKi~Rv 102 (109)
T 3lax_A 68 REITR-QLKDEILVTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHH-HHHHHHSSCCEEEEECTTCSCCC----CCCE
T ss_pred HHHHH-HHHHHhCCccceEEEcCCeecCC-CCCcchh
Confidence 33333 121 22344444444 2579999 7999883
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5e-09 Score=104.49 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=52.3
Q ss_pred CCCCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeC----CCcEEEEeeccceeeeCceeeCcHHHHHH
Q 012673 273 DGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAV 348 (458)
Q Consensus 273 ~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~ 348 (458)
-+.|+.+||+++... |.| .|++||+++++. ..++.|+||.++++++.|+++...+||++
T Consensus 381 Ve~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~a 443 (581)
T 4eql_A 381 VKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKA 443 (581)
T ss_dssp CCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHH
T ss_pred cCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHH
Confidence 347888999998643 221 389999999986 46899999999999999999999999999
Q ss_pred HhcC
Q 012673 349 LLQH 352 (458)
Q Consensus 349 l~~~ 352 (458)
|.+.
T Consensus 444 l~~a 447 (581)
T 4eql_A 444 VSQA 447 (581)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9854
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-08 Score=98.32 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=56.8
Q ss_pred CCCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCC----CcEEEEeeccceeeeCceeeCcHHHHHHH
Q 012673 274 GSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG----GNVWLVGRRNGRIKSGGENVYPEEVEAVL 349 (458)
Q Consensus 274 ~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~----g~l~~~GR~~d~i~~~G~~v~~~~iE~~l 349 (458)
..|+.+||+++... |.| .|++||+++++.- .++.|+||.++++++.|+++++.+||+++
T Consensus 389 e~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al 451 (581)
T 4epl_A 389 KIGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSV 451 (581)
T ss_dssp CTTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHH
T ss_pred CCCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHH
Confidence 36888999998643 221 3899999998752 57999999999999999999999999988
Q ss_pred hcC------c--CcceEEEEe
Q 012673 350 LQH------P--GIIGIVVVG 362 (458)
Q Consensus 350 ~~~------~--~v~~~~v~~ 362 (458)
.+. . .|.|..++.
T Consensus 452 ~~a~~~l~~~~~~l~eft~~~ 472 (581)
T 4epl_A 452 ESAAKRLSEEKIEVIDFSSYI 472 (581)
T ss_dssp HHHHHHHHTTTCCEEEEEEEE
T ss_pred HHHHHhhcccCCeEEEEEEec
Confidence 752 2 366776655
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=101.83 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=51.6
Q ss_pred CCCCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeC----CCcEEEEeeccceeeeCceeeCcHHHHHH
Q 012673 273 DGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAV 348 (458)
Q Consensus 273 ~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~ 348 (458)
-+.|+.+||+++... |+| .|++||+++++. ..++.|+||.++++++.|+++++.+||++
T Consensus 393 Ve~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~a 455 (609)
T 4b2g_A 393 VEVGKEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKA 455 (609)
T ss_dssp CCTTCEEEEEEECTT---SCC--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHH
T ss_pred cCCCCeEEEehhhhh---hhh--------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHH
Confidence 346788999998642 332 289999999984 46899999999999999999999999998
Q ss_pred Hhc
Q 012673 349 LLQ 351 (458)
Q Consensus 349 l~~ 351 (458)
+.+
T Consensus 456 v~~ 458 (609)
T 4b2g_A 456 VDN 458 (609)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=80.73 E-value=22 Score=35.13 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=71.6
Q ss_pred CCceEEEEeccCC-CCCccceecccHHHHHHHHH---HHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 64 PEGAVIICFTSGT-TGSPKGVVISHSALIVQSLA---KIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 64 ~~d~a~i~~TSGT-TG~PK~v~~sh~~~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
|+.+|++....+. .+. .-.+|.+.+...... .....|+.++|++..+++-+..+ +..+++++..|+..+.++.
T Consensus 33 p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 109 (549)
T 3g7s_A 33 GEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPINP 109 (549)
T ss_dssp TTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccCC
Confidence 5677766543221 222 235677777544433 33445889999998888765433 3456788999999888765
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHHHH
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLATL 170 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 170 (458)
.....+...++..++..++..+.....+...
T Consensus 110 ~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~ 141 (549)
T 3g7s_A 110 MYKSFELEHILNDSEATTLVVHSMLYENFKPV 141 (549)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEChHHHHHHHHH
Confidence 6778888899999999999988776665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 458 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-75 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 3e-62 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 2e-59 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 3e-55 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 8e-43 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 2e-40 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 2e-40 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 246 bits (630), Expect = 1e-75
Identities = 92/451 (20%), Positives = 164/451 (36%), Gaps = 59/451 (13%)
Query: 15 LQHTAIPSLRWHVSLGSSSS--DFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICF 72
L++ + S+ + L + S D+ RD+ D+++ S P + E + I +
Sbjct: 202 LKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP--EAMNAEDPLFILY 259
Query: 73 TSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSAM-AMLMV 130
TSG+TG PKGV+ + +V + V Y D+Y TA + + G S + L
Sbjct: 260 TSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLAC 319
Query: 131 GACHVFIPKFES----KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 186
GA + + + V++H V L T P + L R S++ +
Sbjct: 320 GATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRIL 379
Query: 187 LNGGGGLPSELMKEATNSF--PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 244
+ G + E + K ++ + TET + PG + G
Sbjct: 380 GSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT--------PLPGAIELKAG 431
Query: 245 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRG-----AHVMLRYWD 294
+P V+ + + G ++ A + +
Sbjct: 432 -------------SATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHE 478
Query: 295 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 354
+F ST + +GD D+ G W+ GR + + G + E+E+ L+ HP
Sbjct: 479 RFEQTY-FSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPK 537
Query: 355 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 414
I VVGI +A + + A V L + S + +R R++ +
Sbjct: 538 IAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAE-------------VRNWVRKE-I 583
Query: 415 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445
P + W P T +GKI R +R+
Sbjct: 584 GPLATPDVLH-WTDSLPKTRSGKIMRRILRK 613
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 211 bits (537), Expect = 3e-62
Identities = 83/454 (18%), Positives = 164/454 (36%), Gaps = 50/454 (11%)
Query: 13 LELQHTAIPSLRWHVSLGSSSSDFVN-KRDMLTADILKGYSLRSLPFTHSWAPEGAVIIC 71
++ P +R + +++ V + ++ E + +
Sbjct: 186 VDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLL 245
Query: 72 FTSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSAM-AMLM 129
+TSG+TG+PKGV S + ++ +L + ++DV+ + I G + + L+
Sbjct: 246 YTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLL 305
Query: 130 VGACHVFIPKFES----KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKK 185
G + + + +++H VT P + L S++
Sbjct: 306 YGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRC 365
Query: 186 ILNGGGGLPSELMKEATNSFPKAK--LISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 243
+ + G + +E+ + + K + ++ Y TE+ S L T PG
Sbjct: 366 LGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPG------ 419
Query: 244 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-------GRILTRGA--HVMLRYW- 293
P ++ V + G + + A W
Sbjct: 420 --------------SASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK 465
Query: 294 --DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 351
D++L ++ + TGD + D G +W++GR + + G + E+EA +++
Sbjct: 466 NHDRYLDTY-LNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIE 524
Query: 352 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 411
P + VVG + + V A V L+ WS + D EL + L R+
Sbjct: 525 DPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDD------ELQDIKKHLVFTVRK 578
Query: 412 KNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445
+ F AP+L + P T +GKI R +R+
Sbjct: 579 D-IGPFAAPKLII-LVDDLPKTRSGKIMRRILRK 610
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 201 bits (512), Expect = 2e-59
Identities = 98/400 (24%), Positives = 159/400 (39%), Gaps = 44/400 (11%)
Query: 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLA--KIAIVGYGEDDVYLHTAPLCHIG 119
A + +T+GTTG PKGVV SH AL++ SLA + E DV L P+ H+
Sbjct: 166 VPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVN 225
Query: 120 GLSSAMAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWK 178
A +VGA V P+ + S +E + VT VP + LA +
Sbjct: 226 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR- 284
Query: 179 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 238
++++++ GG P L+ + + YG+TETS + LE+ +
Sbjct: 285 -LKTLRRLVVGGSAAPRSLIARFERMGVE--VRQGYGLTETSPVVV-QNFVKSHLESLSE 340
Query: 239 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-------GSSHVGRILTRGAHVMLR 291
+ G P P V L+V + +G + +G +
Sbjct: 341 EEKLTLKAK-----------TGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG 389
Query: 292 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 351
Y+ A S T + + TGDI D+ G V + R IKSGGE + ++E L+
Sbjct: 390 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMG 449
Query: 352 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 411
HP + VV I + + E +A V R + E L +H +
Sbjct: 450 HPKVKEAAVVAIPHPKWQERPLAVVVPRGE-----------------KPTPEELNEHLLK 492
Query: 412 KNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451
++ P +V + + P TS GK + +R + ++
Sbjct: 493 AGFAKWQLPDAYV-FAEEIPRTSAGKFLKRALREQYKNYY 531
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 190 bits (482), Expect = 3e-55
Identities = 96/449 (21%), Positives = 177/449 (39%), Gaps = 53/449 (11%)
Query: 11 WYLELQHTAIPSLRWHVSLGSSS--SDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAV 68
+ +P ++ + + S + F + +T+ + G++ +
Sbjct: 131 QKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIA 190
Query: 69 IICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGE---DDVYLHTAPLCHIGGLSSAM 125
+I +SG+TG PKGV + H V+ + + D L P H G+ + +
Sbjct: 191 LIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL 250
Query: 126 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKK 185
L+ G V + +FE + L +++ + + S + VP + + A + K ++ +
Sbjct: 251 GYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD--LSNLHE 308
Query: 186 ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 245
I +GG L E+ + F + YG+TET+S + + + PG
Sbjct: 309 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTS---AILITPEGDDKPG-------- 357
Query: 246 VTPNSVHQPQGVCVGKPAPHVELKVCSD------GSSHVGRILTRGAHVMLRYWDQFLAK 299
VGK P E KV G + G + RG +M Y + A
Sbjct: 358 ------------AVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEAT 405
Query: 300 PSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 359
++ + WL +GDI D+ + ++V R IK G V P E+E++LLQHP I
Sbjct: 406 NALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAG 465
Query: 360 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKA 419
V G+ + E+ A V L ++ + + + + +T K
Sbjct: 466 VAGLPDDDAGELPAAVVVLEHGKT----------------MTEKEIVDYVASQ-VTTAKK 508
Query: 420 PRLFVLWRKPFPLTSTGKIRRDEVRREVM 448
R V++ P TGK+ ++R ++
Sbjct: 509 LRGGVVFVDEVPKGLTGKLDARKIREILI 537
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 156 bits (394), Expect = 8e-43
Identities = 82/395 (20%), Positives = 133/395 (33%), Gaps = 65/395 (16%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS 123
+ +TSGTTG+PKG ++ H + + + E D A + +
Sbjct: 165 STDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE 224
Query: 124 AMAMLMVGACHVFIPK--FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 181
L+ GA I K E ++IT+P +
Sbjct: 225 MFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV-------HLDPERIL 277
Query: 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 241
S++ ++ G L+ + K I+AYG TET+ T
Sbjct: 278 SIQTLITAGSATSPSLVNK---WKEKVTYINAYGPTETTICATTWV-------------- 320
Query: 242 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQ- 295
V +G P + ++ + + G + G + YW +
Sbjct: 321 ------ATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRP 374
Query: 296 ------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 349
F+ P V GE TGD GN+ +GR + ++K G V EEVE++L
Sbjct: 375 ELTSQKFVDNPFV-PGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESIL 433
Query: 350 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHC 409
L+H I V + + + A + + E LRQ
Sbjct: 434 LKHMYISETAVSVHKDHQEQPYLCAYFVSEKH------------------IPLEQLRQFS 475
Query: 410 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
E+ L + P F+ PLTS GKI R ++
Sbjct: 476 SEE-LPTYMIPSYFI-QLDKMPLTSNGKIDRKQLP 508
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 149 bits (376), Expect = 2e-40
Identities = 95/388 (24%), Positives = 156/388 (40%), Gaps = 39/388 (10%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHIGG 120
P I +TSGTTG PK +I A + L VG +G +V L PL H+ G
Sbjct: 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210
Query: 121 LSSAMAM-LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKG 179
+ + L + +V + +F AL+ V+Q VTSL P + LA +
Sbjct: 211 FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK 270
Query: 180 RDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 239
DS++ + G +P +++ P ++ YG TE +SL T
Sbjct: 271 LDSLRHVTFAGATMPDAVLETVHQHLPGE-KVNIYGTTEAMNSLYMRQPKTGT------- 322
Query: 240 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 299
+ V + + V+ ++ ++G + + +
Sbjct: 323 --------EMAPGFFSEVRIVRIGGGVD-EIVANGEEGELIVAASDSAFVGYLNQPQATA 373
Query: 300 PSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 359
+ G W T D+ G V ++GR + I SGGEN++P E+E VL PG+ +V
Sbjct: 374 EKLQDG--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVV 431
Query: 360 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKA 419
V+G+A+ R + V ACV R LS++ L CR L FK
Sbjct: 432 VIGLADQRWGQSVTACVVPRLGET----------------LSADALDTFCRSSELADFKR 475
Query: 420 PRLFVLWRKPFPLTSTGKIRRDEVRREV 447
P+ + P + K+ R ++ ++V
Sbjct: 476 PKRYF-ILDQLPKNALNKVLRRQLVQQV 502
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 149 bits (377), Expect = 2e-40
Identities = 83/397 (20%), Positives = 134/397 (33%), Gaps = 51/397 (12%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS 122
+ + G+TG K + +H I + + VYL P+ H LS
Sbjct: 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLS 239
Query: 123 SAMAMLM--VGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
S + + G V P A +E+ VT VP + ++
Sbjct: 240 SPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD--L 297
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 240
S++ + GG +E + F + L DP
Sbjct: 298 SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLV---NYTRLDDPEEIIVN--- 351
Query: 241 QAFGNVTPNSVHQPQGVCVGKP-APHVELKVCSDGSSHV-----GRILTRGAHVMLRYWD 294
GKP +P+ E +V D V G +LTRG + + Y+
Sbjct: 352 -----------------TQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYK 394
Query: 295 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 354
+ T + + TGDI + G + + GR +I GGE V EEVE LL HP
Sbjct: 395 AEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA 454
Query: 355 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 414
+ +V + + L E + R+ + L+ RE+ L
Sbjct: 455 VHDAAMVSMPDQFLGERSCVFIIPRDE-----------------APKAAELKAFLRERGL 497
Query: 415 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451
+K P + + FP T GK+ + +R + L
Sbjct: 498 AAYKIPDRVE-FVESFPQTGVGKVSKKALREAISEKL 533
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 87.09 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 86.57 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 82.39 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 81.87 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 80.32 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=4.6e-63 Score=510.76 Aligned_cols=358 Identities=21% Similarity=0.251 Sum_probs=300.8
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHH-HHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEec
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQS-LAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFI 137 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~-~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~ 137 (458)
..++++|+++|+|||||||.||||+++|++++.+. ......++++++|++++.+|++|++++. .++.+|++|++++++
T Consensus 247 ~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~ 326 (643)
T d1pg4a_ 247 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 326 (643)
T ss_dssp CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEe
Confidence 34578999999999999999999999999976554 4455567899999999999999999975 567889999999987
Q ss_pred CC----CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCC--CCcee
Q 012673 138 PK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP--KAKLI 211 (458)
Q Consensus 138 ~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~--~~~i~ 211 (458)
+. +++..+++.|+++++|++.++|+++..|++.........++++||.++++|+++++++++++.+.++ +++++
T Consensus 327 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~ 406 (643)
T d1pg4a_ 327 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 406 (643)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE
T ss_pred cCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEE
Confidence 53 5889999999999999999999999999877554433345689999999999999999999999984 57899
Q ss_pred eccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEec-
Q 012673 212 SAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRG- 285 (458)
Q Consensus 212 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g- 285 (458)
+.||+||+++.++....... ..+.+++|+|+++++++++|++ .++.|||+++|
T Consensus 407 ~~yG~TE~g~~~~~~~~~~~---------------------~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~Gel~v~~~ 465 (643)
T d1pg4a_ 407 DTWWQTETGGFMITPLPGAI---------------------ELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDS 465 (643)
T ss_dssp EEBCCGGGSSCSBCCCTTTC---------------------CBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSC
T ss_pred EeechhhccceEEecCCCcc---------------------CCCCCccccccCCCEEEEECCCCCCCCCCceEEEEEecC
Confidence 99999999865543211100 0123369999999999999986 56789999999
Q ss_pred -cccchhhhcCcCCCCccc--CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEe
Q 012673 286 -AHVMLRYWDQFLAKPSVS--TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVG 362 (458)
Q Consensus 286 -~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 362 (458)
|+++.|||++++.+...+ ..+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++
T Consensus 466 ~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg 545 (643)
T d1pg4a_ 466 WPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVG 545 (643)
T ss_dssp CTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEE
T ss_pred CCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence 568899999877555432 45899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHH
Q 012673 363 IANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDE 442 (458)
Q Consensus 363 ~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~ 442 (458)
++++..|+.++|+|+++++....+ ...++|+++|++ .|++|++|+.|+++ ++||+|++||++|+.
T Consensus 546 ~~d~~~ge~~~a~Vv~~~~~~~~~-------------~~~~~i~~~~~~-~L~~~~vP~~i~~v-~~lP~T~sGKi~R~~ 610 (643)
T d1pg4a_ 546 IPHAIKGQAIYAYVTLNHGEEPSP-------------ELYAEVRNWVRK-EIGPLATPDVLHWT-DSLPKTRSGKIMRRI 610 (643)
T ss_dssp EEETTTEEEEEEEEEECTTCCCCH-------------HHHHHHHHHHHH-HTCGGGCCSEEEEC-SCCCBCTTSCBCHHH
T ss_pred EECCCCCeEEEEEEEECCCCCCCH-------------HHHHHHHHHHHh-hCCcccCccEEEEE-CCCCCCCCcCccHHH
Confidence 999999999999999987632111 124579999998 69999999987765 789999999999999
Q ss_pred HHHHHHHHhhc
Q 012673 443 VRREVMSHLKS 453 (458)
Q Consensus 443 l~~~~~~~~~~ 453 (458)
||++++.+.+.
T Consensus 611 Lr~~~~~~~~~ 621 (643)
T d1pg4a_ 611 LRKIAAGDTSN 621 (643)
T ss_dssp HHHHHHTC---
T ss_pred HHHHhcCCccc
Confidence 99999875443
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-60 Score=494.88 Aligned_cols=367 Identities=20% Similarity=0.286 Sum_probs=296.6
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHH-HhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI-AIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~ 138 (458)
...++|+++|+|||||||.||||+++|++++.+..... ..+++.++|++++.+|++|++|+ ..++.++..|+++++.+
T Consensus 235 ~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 314 (640)
T d1ry2a_ 235 PVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFE 314 (640)
T ss_dssp CEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEEC
T ss_pred CcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEec
Confidence 45678999999999999999999999999876654444 46688999999999999999987 46778899999988876
Q ss_pred C----CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCC--CCceee
Q 012673 139 K----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP--KAKLIS 212 (458)
Q Consensus 139 ~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~--~~~i~~ 212 (458)
. +++..+++.|+++++|++.++|+++..|.+..........+++||.+++||+++++++.+++.+.++ .+.+++
T Consensus 315 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~ 394 (640)
T d1ry2a_ 315 GTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVD 394 (640)
T ss_dssp SCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEE
T ss_pred CCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEe
Confidence 4 4889999999999999999999999988776544333345689999999999999999999999985 357999
Q ss_pred ccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCC-------CCccEEEEec
Q 012673 213 AYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS-------SHVGRILTRG 285 (458)
Q Consensus 213 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~-------~~~Gel~v~g 285 (458)
.||+||++...+......... .+.+++|.|+++++++++|++. +..|||+++|
T Consensus 395 ~yg~te~~~~~~~~~~~~~~~--------------------~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~ 454 (640)
T d1ry2a_ 395 TYWQTESGSHLVTPLAGGVTP--------------------MKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKA 454 (640)
T ss_dssp CBCCTTTCSCSEECCTTTCCC--------------------CCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESS
T ss_pred eecccccccccccccCCCcCC--------------------CCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEe
Confidence 999999987554322211110 1233699999999999999763 3469999998
Q ss_pred --cccchhhhcCcCCCCccc--CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEE
Q 012673 286 --AHVMLRYWDQFLAKPSVS--TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361 (458)
Q Consensus 286 --~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 361 (458)
|+++.|||++++.+.+.+ +.+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|+
T Consensus 455 ~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vv 534 (640)
T d1ry2a_ 455 AWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVV 534 (640)
T ss_dssp CCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEE
T ss_pred cCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEE
Confidence 689999999988776654 4569999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHH
Q 012673 362 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD 441 (458)
Q Consensus 362 ~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~ 441 (458)
+++++..|+.++|+|+++++........ .....-.++|.+++++ .|++|++|+.++++ ++||+|++|||+|+
T Consensus 535 g~~d~~~ge~~~a~Vv~~~~~~~~~~~~------~~~~~l~~~l~~~~~~-~L~~~~~P~~i~~v-~~lP~T~sGKi~R~ 606 (640)
T d1ry2a_ 535 GFNDDLTGQAVAAFVVLKNKSSWSTATD------DELQDIKKHLVFTVRK-DIGPFAAPKLIILV-DDLPKTRSGKIMRR 606 (640)
T ss_dssp CCCCCTTSCCCEEEEEEC------------------CCSHHHHHHHHHHH-HTCTTTSCSEEEEC-SCCCBCTTSCBCHH
T ss_pred EEECCCCCeEEEEEEEEcCCCCccccch------HHHHHHHHHHHHHHHh-hCCCCCCceEEEEe-CCCCCCCCcCccHH
Confidence 9999999999999999988743221100 0001124678888988 69999999988775 78999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 012673 442 EVRREVMSHLKSLP 455 (458)
Q Consensus 442 ~l~~~~~~~~~~~~ 455 (458)
.||++++++..++.
T Consensus 607 ~Lr~~~~~~~~~~~ 620 (640)
T d1ry2a_ 607 ILRKILAGESDQLG 620 (640)
T ss_dssp HHHHSCC-------
T ss_pred HHHHHHhCCccccC
Confidence 99999887665543
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1e-59 Score=478.31 Aligned_cols=405 Identities=23% Similarity=0.323 Sum_probs=313.1
Q ss_pred cccccccchhhhhhccccCCCcceEEeeCCCCcchh--hhhhhhhhcccccCcccccCCCCCCCCCceEEEEeccCCCCC
Q 012673 2 LVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFV--NKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGS 79 (458)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~ 79 (458)
+|+++...+.+.++ ..++|.++.+++++....... ..........................++++++++|||||||.
T Consensus 123 vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 201 (541)
T d1lcia_ 123 VFVSKKGLQKILNV-QKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGL 201 (541)
T ss_dssp EEECGGGHHHHHHH-HHHCTTCCEEEETTCSSCBTTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----C
T ss_pred Eeeeccccccchhc-cccccccceeeeecCCccccccchhhhhhhhhccccccccccCccccCCCCceEEEEeecccccc
Confidence 45666766666666 567888888888765432211 111111111111111111112233457899999999999999
Q ss_pred ccceecccHHHHHHHHHHHHhh---cCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCChHHHHHHHHHhcceE
Q 012673 80 PKGVVISHSALIVQSLAKIAIV---GYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTS 156 (458)
Q Consensus 80 PK~v~~sh~~~~~~~~~~~~~~---~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~ 156 (458)
||+|+++|++++.........+ .+.+++++++.+|++|..++...+..+..++..+.....+....+.++..+++|.
T Consensus 202 PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 281 (541)
T d1lcia_ 202 PKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQS 281 (541)
T ss_dssp CCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSE
T ss_pred ccccccccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccccccccccccccchhHHHHhhhhccc
Confidence 9999999999987666554433 4667899999999999999988888899999999988899999999999999999
Q ss_pred EeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCC
Q 012673 157 LITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 236 (458)
Q Consensus 157 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~ 236 (458)
+..+|.++..++........ ..+++|.+++||+++++...+.+.+.++...+++.||+||++..++.......
T Consensus 282 ~~~~p~~~~~~~~~~~~~~~--~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~----- 354 (541)
T d1lcia_ 282 ALLVPTLFSFFAKSTLIDKY--DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDD----- 354 (541)
T ss_dssp EECCHHHHHHHHHCSCGGGS--CCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC-------
T ss_pred cccCcccccccccccccccc--ccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccC-----
Confidence 99999999998876544433 45789999999999999999999999966789999999999887665332211
Q ss_pred CCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhhhcCcCCCCcccCCCceEe
Q 012673 237 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLD 310 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~ 310 (458)
..+++|+|+|+++++|+|++ .|+.|||+|+|++++.||++++..+...+..++||+
T Consensus 355 ------------------~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~ 416 (541)
T d1lcia_ 355 ------------------KPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLH 416 (541)
T ss_dssp -------------------CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEE
T ss_pred ------------------CCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCcccc
Confidence 22369999999999999865 478999999999999999999888777788899999
Q ss_pred cCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecccccccccccc
Q 012673 311 TGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCD 390 (458)
Q Consensus 311 TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~ 390 (458)
|||+|+++++|+++++||++|+||++|++|+|.+||++|.+||+|.+++|++++++..+++++|+|+++++.
T Consensus 417 TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~-------- 488 (541)
T d1lcia_ 417 SGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK-------- 488 (541)
T ss_dssp EEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------
T ss_pred CCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999997652
Q ss_pred ccchhhhhhhhHHHHHHHhhhcccccc-cCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 391 QSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 391 ~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
..+.++|++++++ .++++ ++|+.++++ ++||+|++||++|++||+++.+.
T Consensus 489 --------~~~~~~l~~~~~~-~l~~~~~~p~~i~~v-~~lP~t~~GKi~r~~l~~~~~~~ 539 (541)
T d1lcia_ 489 --------TMTEKEIVDYVAS-QVTTAKKLRGGVVFV-DEVPKGLTGKLDARKIREILIKA 539 (541)
T ss_dssp --------CCCHHHHHHHHHH-HSCGGGSCTTEEEEE-SSCCC-----CCHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHH-hCCccccCCcEEEEe-CCCCcCCCcCccHHHHHHHHHHh
Confidence 2456789999998 57666 478877765 78999999999999999998875
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8.7e-59 Score=470.82 Aligned_cols=356 Identities=26% Similarity=0.372 Sum_probs=264.6
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHH--HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEec
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI--AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFI 137 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~--~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~ 137 (458)
....++++++++|||||||.||||+++|.++..+..... ..+.+..+|++++.+|++|.+++...+..+..|+++++.
T Consensus 164 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~ 243 (534)
T d1v25a_ 164 VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLP 243 (534)
T ss_dssp CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEEC
T ss_pred cccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeeec
Confidence 345688999999999999999999999999976544333 333456889999999999999998777777888877776
Q ss_pred C-CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 138 P-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 138 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
+ .+++..++.++.++++|++.++|.++..++........ ..+++|.+++||++++++..+.+++. +.++++.||+
T Consensus 244 ~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~--~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~yG~ 319 (534)
T d1v25a_ 244 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH--RLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGL 319 (534)
T ss_dssp TTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC--CCSSCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEEC
T ss_pred cccccccccchhhhhccccccccCchhhhhhhhhhccccc--cccceeEEEEecCCCCHHHHHHHHHh--CCeeeeeccc
Confidence 5 58999999999999999999999999999988665554 46899999999999999999998865 6899999999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-------CCCccEEEEeccccc
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-------SSHVGRILTRGAHVM 289 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-------~~~~Gel~v~g~~~~ 289 (458)
||++..++............. ........++|.|+++++++|+|++ .++.|||+++|++++
T Consensus 320 te~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~ 387 (534)
T d1v25a_ 320 TETSPVVVQNFVKSHLESLSE------------EEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWIT 387 (534)
T ss_dssp GGGSSEEEECCCCGGGTTSCH------------HHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSB
T ss_pred cccccceeecccCccccccCc------------cccccccccceeccCCcEEEEECCCCCCCCCCCCeeEEEEEcCCccc
Confidence 999987664332211100000 0000112358999999999999986 267899999999999
Q ss_pred hhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCc
Q 012673 290 LRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLT 369 (458)
Q Consensus 290 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 369 (458)
.|||++++.+...+..+|||+|||+|++++||+++++||++|+||++|++|+|.+||++|.+||+|.+++|++++++.++
T Consensus 388 ~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~ 467 (534)
T d1v25a_ 388 GGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQ 467 (534)
T ss_dssp SSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSS
T ss_pred ceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCC
Confidence 99999999888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 370 EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 370 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
+.++|+|+++.+.. ...+.++.++++ .|++|++|+.|+++ ++||+|++|||+|++||++|++
T Consensus 468 ~~l~a~vv~~~~~~----------------~~~~~~~~~~~~-~l~~~~~P~~i~~~-~~lP~t~~GKi~R~~lr~~~~~ 529 (534)
T d1v25a_ 468 ERPLAVVVPRGEKP----------------TPEELNEHLLKA-GFAKWQLPDAYVFA-EEIPRTSAGKFLKRALREQYKN 529 (534)
T ss_dssp EEEEECC------------------------------------CCCTTTSCSBC---------------CCTTHHHHSTT
T ss_pred eEEEEEEEeCCCCC----------------CHHHHHHHHHHh-cCCcCCCccEEEEE-CCCCCCCCccccHHHHHHHHHh
Confidence 99999998875421 122333444665 79999999998775 7899999999999999988754
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=7.1e-54 Score=434.49 Aligned_cols=349 Identities=24% Similarity=0.351 Sum_probs=301.0
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH--HHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS--SAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~--~~~~~l~~G~~~v~~~ 138 (458)
...++|+++|+|||||||.||||++||.++..+.......+++.++|++++.+|++|.+++. ..+..+..|.+++..+
T Consensus 178 ~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~ 257 (536)
T d1mdba_ 178 EVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP 257 (536)
T ss_dssp CCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred ccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeeccccccccccccccccC
Confidence 45789999999999999999999999999999999889999999999999999999998874 3445556677888888
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..++..+++++++.+..+|..+..+......... ..+++|.+++||+++++.+.+++.+.+ +......||.+|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 334 (536)
T d1mdba_ 258 SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD--DLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAE 334 (536)
T ss_dssp SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC--CCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTT
T ss_pred CCCHHHHHHHHhhhccccccccchhhhhhhhhcccccc--ccCcceeEEEeccccccccccchhhcc-Cceeeecccccc
Confidence 89999999999999999999999999988877655443 457899999999999999999999999 788888999888
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCc-eEEEecCC-----CCCccEEEEeccccchhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHV-ELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
.+..+........ ....++|.|+++. .+.+.+++ .++.|||+++|+.++.||
T Consensus 335 ~~~~~~~~~~~~~----------------------~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY 392 (536)
T d1mdba_ 335 GLVNYTRLDDPEE----------------------IIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGY 392 (536)
T ss_dssp SCEEECCTTSCHH----------------------HHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSC
T ss_pred ccccccccccccc----------------------cccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCcccccc
Confidence 7654432211100 0123589998655 44444443 678999999999999999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
++++..+...+..++||+|||++++++||+++++||++|+||++|++|+|.+||++|.+||+|.+++|++.+++..++.+
T Consensus 393 ~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~ 472 (536)
T d1mdba_ 393 YKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERS 472 (536)
T ss_dssp TTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred ccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEE
Confidence 99998888888899999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
+|+|+++++. .+.++|+++++++.|+.|++|+.++++ ++||+|++|||+|++|++.++++|.
T Consensus 473 ~a~v~~~~~~-----------------~~~~~l~~~l~~~~l~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~~~~~l~ 534 (536)
T d1mdba_ 473 CVFIIPRDEA-----------------PKAAELKAFLRERGLAAYKIPDRVEFV-ESFPQTGVGKVSKKALREAISEKLL 534 (536)
T ss_dssp EEEEEESSSC-----------------CCHHHHHHHHHHTTCCGGGSCSEEEEC-SSCCBCTTSCBCHHHHHHHHHHHHH
T ss_pred EEEEEECCCC-----------------CCHHHHHHHHHhcCCCcCcCccEEEEE-CCCCcCCCcCccHHHHHHHHHHHHh
Confidence 9999987652 456789999987569999999987765 7899999999999999999998875
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.6e-53 Score=429.82 Aligned_cols=333 Identities=24% Similarity=0.326 Sum_probs=283.6
Q ss_pred CCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC--
Q 012673 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-- 139 (458)
Q Consensus 62 ~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-- 139 (458)
..++|+++|+|||||||.||+|+++|.++..........++...+|++++.+|++|.+++..++.++..|+++++...
T Consensus 163 ~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 242 (514)
T d1amua_ 163 SKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDT 242 (514)
T ss_dssp CCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHH
T ss_pred CCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccc
Confidence 467899999999999999999999999999999999999999999999999999999999988999999999988764
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+....++.+..+.++.+...|...... ......+++.++++|+++++++.+++.+ ++.+++.||+||
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~~~yG~tE 311 (514)
T d1amua_ 243 INDFVKFEQYINQKEITVITLPPTYVVHL--------DPERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTE 311 (514)
T ss_dssp HTCHHHHHHHHHHTTCCEEEECHHHHTTS--------CTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGG
T ss_pred ccchhhhhhhhhhhhcccccceeeecccc--------cccccccccEEEEecccCCHHHhhhhcc---ceeEEEeecccc
Confidence 5677788999999999999988754321 1234578999999999999999887766 578999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~ 293 (458)
++.+++.......... ...+.|.+.++..+.+.|++ .|+.|||+|+|++++.|||
T Consensus 312 ~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~~~~~~gY~ 371 (514)
T d1amua_ 312 TTICATTWVATKETIG--------------------HSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYW 371 (514)
T ss_dssp GSSCSEEEECCSSCCC--------------------SSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEET
T ss_pred CceeeeeccccccccC--------------------cccccccceeeeeEeeecccceecCCCCeeEEEEccCccccccc
Confidence 9987654433221111 12247889999999999876 6889999999999999999
Q ss_pred cCcCCCCccc------CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCC
Q 012673 294 DQFLAKPSVS------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANAR 367 (458)
Q Consensus 294 ~~~~~~~~~~------~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 367 (458)
+++..+...+ ++++||+|||+|++++||+++++||++|+|+++|++|+|.+||++|.+||+|.+++|++.+++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~ 451 (514)
T d1amua_ 372 KRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQ 451 (514)
T ss_dssp TCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTT
T ss_pred ccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCC
Confidence 9887655443 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 368 LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 368 ~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
.++.++|+++++++ .+.++|++++++ .|++|++|+.++++ ++||+|++|||+|++||+
T Consensus 452 ~g~~~~a~v~~~~~------------------~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 452 EQPYLCAYFVSEKH------------------IPLEQLRQFSSE-ELPTYMIPSYFIQL-DKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp SCEEEEEEEEESSC------------------CCHHHHHHHHHH-HSCGGGSCSEEEEC-SSCCBCTTSSBCGGGSCC
T ss_pred CCEEEEEEEEcCCC------------------CCHHHHHHHHHh-hCCcccCceEEEEe-CCCCCCCCcChhHHhcCC
Confidence 99999999998765 457889999998 69999999988765 789999999999999987
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=2.4e-49 Score=397.17 Aligned_cols=346 Identities=28% Similarity=0.441 Sum_probs=282.4
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcC--CCCceEEeccchhhHhhh-HHHHHHHhcCceEEe
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGY--GEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVF 136 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~ 136 (458)
...+++++++++|||||||.||+|+++|.++..........+.. ...+++++.+|++|..+. ...+.+...++++++
T Consensus 148 ~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 227 (503)
T d3cw9a1 148 PQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV 227 (503)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEE
T ss_pred ccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccccccccc
Confidence 35678999999999999999999999999998887776665543 456889999999887776 455677788888898
Q ss_pred cCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 137 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
.+.+++..++..+.+++++++..+|..+..+.............++||.+++||++++++....+...+ +..+.+.||+
T Consensus 228 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~~~~~yg~ 306 (503)
T d3cw9a1 228 VEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGT 306 (503)
T ss_dssp CSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHC-CSEEEEEEEE
T ss_pred ccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccc-cccccccccc
Confidence 899999999999999999999999999998887766555444567899999999999999999999998 6789999999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecC-----CCCCccEEEEec-cccch
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRG-AHVML 290 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-----~~~~~Gel~v~g-~~~~~ 290 (458)
+|++..+......... ..+.+.+.+.....+.+. ..|+.|++++.+ +....
T Consensus 307 ~e~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~ 363 (503)
T d3cw9a1 307 TEAMNSLYMRQPKTGT-----------------------EMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFV 363 (503)
T ss_dssp TTTEEEEEEESCSSSS-----------------------EEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCC
T ss_pred cccceeeeeccccccc-----------------------cccccccccceeeeeecccCcccCCCccccccccccccccc
Confidence 9998655543322111 011222222222222111 156778777665 56667
Q ss_pred hhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcc
Q 012673 291 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 370 (458)
Q Consensus 291 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 370 (458)
+|++++..+.+.+ .+|||+|||+|++++||+++++||+||+||++|++|+|.+||++|.+||+|.+++|++.+++..++
T Consensus 364 ~~~~~~~~t~~~~-~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~ 442 (503)
T d3cw9a1 364 GYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQ 442 (503)
T ss_dssp CBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEE
T ss_pred cccCChhhhHHHh-cCCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCe
Confidence 7888877776655 579999999999999999999999999999999999999999999999999999999999998899
Q ss_pred eEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHH
Q 012673 371 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREV 447 (458)
Q Consensus 371 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~ 447 (458)
.++|+|+++++. ..+.+++++++++..|+.|++|+.|+++ ++||+|++|||+|++|++++
T Consensus 443 ~~~a~v~~~~~~----------------~~~~~~l~~~~~~~~l~~~~~P~~i~~v-~~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 443 SVTACVVPRLGE----------------TLSADALDTFCRSSELADFKRPKRYFIL-DQLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp EEEEEEEECTTC----------------CCCHHHHHHHHHHSSSCGGGSCSEEEEC-SCCCBCTTSCBCHHHHHHHH
T ss_pred EEEEEEEeCCCC----------------CCCHHHHHHHHHhcCCCCCCCccEEEEE-CCCCcCCCcCccHHHHHHhc
Confidence 999999987652 2557889999965579999999987765 78999999999999999986
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=87.09 E-value=1.9 Score=40.10 Aligned_cols=95 Identities=11% Similarity=0.126 Sum_probs=68.9
Q ss_pred eccCCCCCccceecccHHHHHHHH---HHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-CChHHHHH
Q 012673 72 FTSGTTGSPKGVVISHSALIVQSL---AKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALE 147 (458)
Q Consensus 72 ~TSGTTG~PK~v~~sh~~~~~~~~---~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~ 147 (458)
++.+-++ ..+|.+.+..... ......|+++||++..+++-...+ ...+++++..|+..+.++. ....++..
T Consensus 39 ~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~-~v~~lA~~~~G~i~vpl~~~~~~~~l~~ 113 (541)
T d1lcia_ 39 FTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNERELLN 113 (541)
T ss_dssp EEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSST-HHHHHHHHHHTCEEEECCTTCCHHHHHH
T ss_pred EEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCeEEEecCCCCCHHHHHH
Confidence 4454444 3468877754443 334455899999998877654322 3556788899998888764 77889999
Q ss_pred HHHHhcceEEeechHHHHHHHHHH
Q 012673 148 AVEQHCVTSLITVPAIMADLATLI 171 (458)
Q Consensus 148 ~i~~~~~t~~~~~P~~~~~l~~~~ 171 (458)
.++..++.+++.....+..+.+..
T Consensus 114 ~l~~~~~~~vi~~~~~~~~~~~~~ 137 (541)
T d1lcia_ 114 SMNISQPTVVFVSKKGLQKILNVQ 137 (541)
T ss_dssp HHHHHCCSEEEECGGGHHHHHHHH
T ss_pred HHHhccceEEeeeccccccchhcc
Confidence 999999999999998887776654
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=86.57 E-value=2.1 Score=41.14 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=67.7
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHH---HHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC-
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQ---SLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP- 138 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~---~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~- 138 (458)
.++.+|++ |-+-.+|..+ .+|.+.+... +.......|+++||++..++|-...+ ...+++++..|+..+.+.
T Consensus 85 ~~d~~Ali-~~~~~~~~~~--~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~-iv~~lA~~~~Gav~v~l~~ 160 (643)
T d1pg4a_ 85 NGDRTAII-WEGDDTSQSK--HISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFG 160 (643)
T ss_dssp HTTSEEEE-EECSSTTCEE--EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEE-EEecCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHH-HHHHHHHHHhCeEEEecCC
Confidence 36777765 4444555444 4566666443 34444556899999999999875554 345678899999887765
Q ss_pred CCChHHHHHHHHHhcceEEeech
Q 012673 139 KFESKSALEAVEQHCVTSLITVP 161 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P 161 (458)
.+.+..+...+++.++.+++...
T Consensus 161 ~~~~~~l~~~l~~~~~~~li~~~ 183 (643)
T d1pg4a_ 161 GFSPEAVAGCIIDSSSRLVITAD 183 (643)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcc
Confidence 48899999999999999888643
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=82.39 E-value=5.3 Score=36.55 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=71.0
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHH---HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
.|+.+|++. - +-.+|...+...+.... ...|++++|++..+++-...+ +...++++..|+..+.++.
T Consensus 36 ~Pd~~Al~~-~--------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~-v~~~la~~~~G~v~v~l~~ 105 (514)
T d1amua_ 36 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 105 (514)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEE-C--------CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHH-HHHHHHHHHhCcEEEEeCC
Confidence 478888763 1 12478877765544433 456899999998888775544 3566788999999887764
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHHH
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLAT 169 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 169 (458)
+.+.++...++..++..++..+.....+..
T Consensus 106 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~ 136 (514)
T d1amua_ 106 EYPKERIQYILDDSQARMLLTQKHLVHLIHN 136 (514)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHHTT
T ss_pred CCCHHHHHHHHhccCCcEEEEehhhhhhhhh
Confidence 788889999999999999998877665543
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=81.87 E-value=6.9 Score=35.95 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=73.0
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHH---HHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQS---LAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~---~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
.|+.+|++...+|.. -.+|...+.... .......|++++|++..+++-...+ +..+++++..|+..+.++.
T Consensus 24 ~pd~~av~~~~~g~~-----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 97 (534)
T d1v25a_ 24 FGRKEVVSRLHTGEV-----HRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANP 97 (534)
T ss_dssp STTCEEEEECTTSCE-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred cCCCeEEEEecCCce-----EEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 466777666665432 236777765443 3444456899999998888765443 3566889999998888764
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHHHH
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLATL 170 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 170 (458)
.....+...++..++..++........+...
T Consensus 98 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~ 129 (534)
T d1v25a_ 98 RLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI 129 (534)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHHHHH
T ss_pred CCCHHHHHHHHHhhccccccccchhhhhHHHH
Confidence 7788899999999999999887777665543
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=80.32 E-value=3.8 Score=37.18 Aligned_cols=92 Identities=16% Similarity=0.228 Sum_probs=64.2
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHH---HHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC-
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQS---LAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP- 138 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~---~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~- 138 (458)
.|+.+|++.-.+|. -+|...+.... .......|++++|++..+++-...+ +..+++++..|+..+.++
T Consensus 15 ~pd~~al~~~~~~~-------~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~v~vpi~~ 86 (503)
T d3cw9a1 15 APDHCALAVPARGL-------RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNP 86 (503)
T ss_dssp STTSEEEEEGGGTE-------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECCCCc-------EEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCcEEEEeCC
Confidence 35777766544442 36777765443 3344455889999988887754332 345678889999888776
Q ss_pred CCChHHHHHHHHHhcceEEeechH
Q 012673 139 KFESKSALEAVEQHCVTSLITVPA 162 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~ 162 (458)
...+..+...+++.++..++....
T Consensus 87 ~~~~~~i~~~l~~~~~~~~i~~~~ 110 (503)
T d3cw9a1 87 RLKSAELAELIKRGEMTAAVIAVG 110 (503)
T ss_dssp TSCHHHHHHHHHHTTCSEEEESSC
T ss_pred CCCHHHHHHHHHhcCCcEEEeecc
Confidence 477888899999999998876554
|